Citrus Sinensis ID: 014007

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
Protein Sequence
MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKPEAAF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEccccEEEEEccEEEEEEccccEEEEEEEEEcccccEEEEEEccccEEEEcccccccEEEEEEcccccEEEEEccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEcccccEEEEEEccccEEEEEEEEccccEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccccccccHccHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEcccHHHHHEccccccccEEHHHHHHcccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEEcEEEEEEcccccEEEEEccccccccEEEEEcccccEEEEEccccccEEEEEEcccccccEEEccccHHHEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEEEccccEEEEEEccccEEEEEEEEcccccccccccccccccccccHHccccccccHcccccccEEEEEccccccEEEEEEccccEEEEEEcccEEEEEEEcccccccEEEHHHHHHccccHcc
Coil and Loop (DISEMBL)
maalsaysspwpeptpdpnpnpnpnsntscgvssedqtDQLQSlesfssmpqdepdsfspsipesnpnyqmplpspaestsssppptllhisfnqdhgcfaagtdhgfriyncdpfrEIFRRDFERGGGIGVVEMLFRCNILalvgggpdpqyplnkvmiwddhqsrcigeLSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIanpkglcavsqgVGSLVLvcpglqkgqvRVEHYASKRTKFIMAHDSRIACFAltqdgqllatsstkGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLavssdkgtVHVFNLkvnsgsarseprstsdptlptsslsfikgvlpkyfssewSVAQFRLVegspyivafghqKNTVVILgmdgsfyrcqfdpvnggemtqleynnflkpeaaf
Flexible Loop (DISEMBL)
MAAlsaysspwpeptpdpnpnpnPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGElsfrsevrsvklrrdriivvlEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLatsstkgtlVRIFNtldgtllqEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKvnsgsarseprstsdptlptsslSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLeynnflkpeaaf
Low Complexity Region (SEG)
MAALSAYsspwpeptpdpnpnpnpnsntsCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMplpspaestsssppptllHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRstsdptlptsslsFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKPEAAF
Disordered region (IsUnstruct)
***************************************************************************************LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK**********************LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNF*******
Disordered Region (DISOPRED)
********S******************************************************************************LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN************************LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKP****
Disordered Region (DISEMBL)
******************NPNPNPNSN**************QSLE***************SIPESNPNYQMP************PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV*****************PTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKPEAAF
Disordered Region (DISPRO)
*AALSAYSSPWPEPTPD*******************************************************************PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN*********************SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKPE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKPEAAF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	432	2.2.26 [Sep-21-2011]
Q640T2	344	WD repeat domain phosphoi	yes	no	0.747	0.938	0.466	3e-82
Q68F45	344	WD repeat domain phosphoi	N/A	no	0.747	0.938	0.466	1e-81
Q5MNZ6	344	WD repeat domain phosphoi	yes	no	0.747	0.938	0.463	2e-80
Q5ZL16	344	WD repeat domain phosphoi	yes	no	0.747	0.938	0.457	2e-79
Q9CR39	344	WD repeat domain phosphoi	yes	no	0.715	0.898	0.470	2e-79
Q5R7W0	344	WD repeat domain phosphoi	yes	no	0.747	0.938	0.460	2e-79
Q7ZUW6	344	WD repeat domain phosphoi	yes	no	0.747	0.938	0.451	5e-79
Q9Y484	360	WD repeat domain phosphoi	no	no	0.719	0.863	0.375	3e-57
Q91VM3	360	WD repeat domain phosphoi	no	no	0.724	0.869	0.374	7e-57
Q6DCV0	355	WD repeat domain phosphoi	N/A	no	0.719	0.876	0.367	7e-56

>sp|Q640T2|WIPI3_XENTR WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45b PE=2 SV=1

 Score =  306 bits (783), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 160/343 (46%), Positives = 221/343 (64%), Gaps = 20/343 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGYVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLK 427
           + AFG + N+V+ +  DGS+Y+ QF+P   GE T+  Y  FL+
Sbjct: 298 VCAFGTEPNSVIAICADGSYYKFQFNP--KGECTRDVYAQFLE 338

Xenopus tropicalis (taxid: 8364)

>sp|Q68F45|WIPI3_XENLA WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45b PE=2 SV=1

 Score =  303 bits (777), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 160/343 (46%), Positives = 220/343 (64%), Gaps = 20/343 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +  VEMLFRCN LALVGG
Sbjct: 13  LLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VSYVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLK 427
           I AFG + N+V+ +  DGS+Y+ QF+P   GE T+  Y  FL+
Sbjct: 298 ICAFGTEPNSVIAICADGSYYKFQFNP--KGECTRDVYAQFLE 338

Xenopus laevis (taxid: 8355)

>sp|Q5MNZ6|WIPI3_HUMAN WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45B PE=2 SV=2

 Score =  300 bits (767), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/343 (46%), Positives = 218/343 (63%), Gaps = 20/343 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLK 427
           I AFG + N V+ +  DGS+Y+  F+P   GE  +  Y  FL+
Sbjct: 298 ICAFGTEPNAVIAICADGSYYKFLFNP--KGECIRDVYAQFLE 338

Homo sapiens (taxid: 9606)

>sp|Q5ZL16|WIPI3_CHICK WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45B PE=2 SV=1

 Score =  296 bits (759), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/343 (45%), Positives = 218/343 (63%), Gaps = 20/343 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   A+  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLANTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLK 427
           I AFG + N V+ +  DGS+Y+  F+    GE ++  Y  FL+
Sbjct: 298 ICAFGTEPNAVLAICADGSYYKFLFN--QKGECSRDVYAQFLE 338

Gallus gallus (taxid: 9031)

>sp|Q9CR39|WIPI3_MOUSE WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45b PE=2 SV=2

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/327 (47%), Positives = 210/327 (64%), Gaps = 18/327 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDGSFYRCQFDP 411
           I AFG + N V+ +  DGS+Y+  F P
Sbjct: 298 ICAFGTEPNAVIAICADGSYYKFLFSP 324

Mus musculus (taxid: 10090)

>sp|Q5R7W0|WIPI3_PONAB WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45B PE=2 SV=1

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/343 (46%), Positives = 217/343 (63%), Gaps = 20/343 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY +  + +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINSNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLK 427
           I AFG + N V+ +  DGS+Y+  F+P   GE  +  Y  FL+
Sbjct: 298 ICAFGTEPNAVIAICADGSYYKFLFNP--KGECIRDVYAQFLE 338

Pongo abelii (taxid: 9601)

>sp|Q7ZUW6|WIPI3_DANRE WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45b PE=2 SV=1

 Score =  295 bits (755), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 155/343 (45%), Positives = 215/343 (62%), Gaps = 20/343 (5%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  + +F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  P    G V++   A+  K    I AH+  + C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLANTEKPPVDIPAHEGVLCCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
            L   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 TLNLQGTRIATASEKGTLIRIFDTSAGQLIQELRRGSQTANIYCINFNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384
           GTVH+F        A  +P+     +L ++S       LPKYFSS+WS ++F++  GSP 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPC 297

Query: 385 IVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLK 427
           + AFG + N V+ +  DGS+Y+  F+P   GE ++  Y  FL+
Sbjct: 298 VCAFGTEPNAVIAICADGSYYKFLFNP--KGECSRDVYAQFLE 338

Danio rerio (taxid: 7955)

>sp|Q9Y484|WIPI4_HUMAN WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1

 Score =  223 bits (567), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 193/338 (57%), Gaps = 27/338 (7%)

Query: 91  ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
           + FNQD  CF    + G RIYN +P  E    D E+ G +G+VEML R N+LALVGGG  
Sbjct: 12  LRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGGGSS 71

Query: 151 PQYPLNKVMIWDD------HQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL 204
           P++    V+IWDD       + + + E +F   V SV++R D+I++VL+ +I+VY+F D 
Sbjct: 72  PKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDN 131

Query: 205 -KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF------IMAH 257
            + L + +T  NPKGLC +   +   +LV PG + G +++   AS +         I AH
Sbjct: 132 PRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAH 191

Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW 317
            S IAC +L Q G ++A++S KGTL+R+F+T     L E+RRG D A +Y + FS ++ +
Sbjct: 192 QSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSF 251

Query: 318 LAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR 377
           L  SSDKGTVH+F LK    + RS            + +  +  ++ +Y  S+WS+A F 
Sbjct: 252 LCASSDKGTVHIFALKDTRLNRRS----------ALARVGKVGPMIGQYVDSQWSLASFT 301

Query: 378 LVEGSPYIVAFGHQK----NTVVILGMDGSFYRCQFDP 411
           +   S  I AFG       N+V+ + +DG+F++  F P
Sbjct: 302 VPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTP 339

Homo sapiens (taxid: 9606)

>sp|Q91VM3|WIPI4_MOUSE WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1

 Score =  221 bits (564), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 194/342 (56%), Gaps = 29/342 (8%)

Query: 87  TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG 146
           T LH  FNQD  CF    + G RIYN +P  E    D E+ G +G+VEML R N+LALVG
Sbjct: 10  TSLH--FNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVG 67

Query: 147 GGPDPQYPLNKVMIWDD------HQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYN 200
           GG  P++    V+IWDD       + + + E +F   V +V++R D+I++VL  +I+VY+
Sbjct: 68  GGSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYS 127

Query: 201 FADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF------ 253
           F D  + L + +T  NPKGLC +   +   +LV PG + G +++   AS +         
Sbjct: 128 FPDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFT 187

Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313
           I AH S +AC +L Q G ++A++S KGTL+R+F+T     L E+RRG D A +Y + FS 
Sbjct: 188 INAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSH 247

Query: 314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSV 373
           ++ +L  SSDKGTVH+F LK    + RS            + +  +  ++ +Y  S+WS+
Sbjct: 248 DSSFLCASSDKGTVHIFALKDTRLNRRS----------ALARVGKVGPMIGQYVDSQWSL 297

Query: 374 AQFRLVEGSPYIVAFGHQK----NTVVILGMDGSFYRCQFDP 411
           A F +   S  I AFG       N+V+ + +DG+F++  F P
Sbjct: 298 ASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTP 339

Mus musculus (taxid: 10090)

>sp|Q6DCV0|WIPI4_XENLA WD repeat domain phosphoinositide-interacting protein 4 OS=Xenopus laevis GN=wdr45 PE=2 SV=1

 Score =  218 bits (555), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 190/335 (56%), Gaps = 24/335 (7%)

Query: 91  ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
           + FNQD  CF    + G RI+N +P  E    D E+ G +G VEML RCN+LALVGGG +
Sbjct: 10  LRFNQDQSCFCCAMETGVRIFNIEPLMEKGHLDQEQVGSVGQVEMLHRCNLLALVGGGSN 69

Query: 151 PQYPLNKVMIWDDH---QSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL-KL 206
           P++    V+IWDD    + + + E +F   V SV+LR D+I++ L+ +I+VY+F D    
Sbjct: 70  PKFSDISVLIWDDSRDGKDKLVLEFTFTKPVLSVRLRSDKIVIALKNRIYVYSFPDNPTK 129

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAHDSR 260
           L + +T  NPKGLC +   +   +L+ PG + G +++    + +         I AH S 
Sbjct: 130 LFEFDTRDNPKGLCDLCPSLEKQLLIFPGHKCGSLQLVDLCNAKPGSSSAPFTINAHQSE 189

Query: 261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320
           + C A+ Q G L+A++S KGTL+R+F+T     L E+RRG D A +Y + FS ++ +L  
Sbjct: 190 LGCLAINQQGTLVASASRKGTLIRLFDTQTREQLVELRRGTDPATLYCINFSHDSSFLCS 249

Query: 321 SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE 380
           SSDKGTVH+F LK    + RS            + +  +  ++ +Y  S+WS+A F +  
Sbjct: 250 SSDKGTVHIFALKDTKLNRRS----------ALARVGKVGPMIGQYVDSQWSLASFTVPA 299

Query: 381 GSPYIVAFGHQK----NTVVILGMDGSFYRCQFDP 411
            S  I AFG       N+V+ + +DG+F++  F P
Sbjct: 300 ESACICAFGKNTSKNVNSVIAVCVDGTFHKYVFTP 334

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
225436703	439	PREDICTED: WD repeat domain phosphoinosi	0.979	0.963	0.752	0.0
240255690	425	transducin/WD40 domain-containing protei	0.960	0.976	0.753	0.0
255582144	447	WD-repeat protein, putative [Ricinus com	0.898	0.868	0.818	0.0
147775635	428	hypothetical protein VITISV_032850 [Viti	0.953	0.962	0.734	1e-179
297821186	432	AT3g62770/F26K9_200 [Arabidopsis lyrata	0.909	0.909	0.763	1e-177
7362757	432	putative protein [Arabidopsis thaliana]	0.960	0.960	0.723	1e-177
225450815	425	PREDICTED: WD repeat domain phosphoinosi	0.854	0.868	0.818	1e-176
224132364	352	predicted protein [Populus trichocarpa]	0.793	0.974	0.872	1e-176
449436529	420	PREDICTED: WD repeat domain phosphoinosi	0.962	0.990	0.729	1e-176
224131184	395	predicted protein [Populus trichocarpa]	0.844	0.924	0.824	1e-174

>gi|225436703|ref|XP_002263976.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3 [Vitis vinifera]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/448 (75%), Positives = 367/448 (81%), Gaps = 25/448 (5%)

Query: 1   MAALSAYSSP-WPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFS 59
           MA L+A SS  WP      NPNP+PNS     +S +   +Q  +++  ++M Q +    S
Sbjct: 1   MATLTAVSSASWP------NPNPSPNSTF---LSQQSHPEQYPAVQDPTAMRQHQGTGLS 51

Query: 60  PSIPE-----SNPNY---QMPLPSPAE--STSSSPPPTLLHISFNQDHGCFAAGTDHGFR 109
               E     S+PN+   Q P  +  E  S S+S  P+LLHISFNQDHGCFAAGTD+GFR
Sbjct: 52  GDGGEDESFSSSPNHHTVQSPNSNLREVVSYSTSSIPSLLHISFNQDHGCFAAGTDNGFR 111

Query: 110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169
           IYNCDPFREIFRRDF+RGGGIGVVEMLFRCNILALVGGGP+PQYPLNKVMIWDDHQSRCI
Sbjct: 112 IYNCDPFREIFRRDFDRGGGIGVVEMLFRCNILALVGGGPEPQYPLNKVMIWDDHQSRCI 171

Query: 170 GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229
           GELSFRSEVR+VKLRRDRIIVVLEQKIF+YNFADLKLLHQIETIANP+GLCAVSQ   SL
Sbjct: 172 GELSFRSEVRAVKLRRDRIIVVLEQKIFLYNFADLKLLHQIETIANPRGLCAVSQLTASL 231

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           VLVCPGLQKGQVRVEHYAS+RTKF  AHDSR+ACFALT DGQLLAT+STKGTLVRIFNT 
Sbjct: 232 VLVCPGLQKGQVRVEHYASRRTKFFAAHDSRLACFALTTDGQLLATASTKGTLVRIFNTS 291

Query: 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPRSTSD 348
           DGT LQEVRRGADRAE+YS+AFSS AQWLAVSSDKGTVHVF LKVNSGS    +    SD
Sbjct: 292 DGTRLQEVRRGADRAEVYSMAFSSTAQWLAVSSDKGTVHVFGLKVNSGSLGNDKSHGASD 351

Query: 349 PTLPTS----SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSF 404
             L  +    SLSFIKGVLPKYFSSEWSVAQFRL EGS YIVAFGHQKNTVVILGMDGSF
Sbjct: 352 ANLAVASSGLSLSFIKGVLPKYFSSEWSVAQFRLHEGSQYIVAFGHQKNTVVILGMDGSF 411

Query: 405 YRCQFDPVNGGEMTQLEYNNFLKPEAAF 432
           YRCQFDPV GGEMTQLEY+NFLKPE AF
Sbjct: 412 YRCQFDPVTGGEMTQLEYHNFLKPEEAF 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255690|ref|NP_567132.4| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|14517420|gb|AAK62600.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] gi|16323362|gb|AAL15394.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] gi|332646868|gb|AEE80389.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/442 (75%), Positives = 365/442 (82%), Gaps = 27/442 (6%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPRSTSDPT-- 350
            QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF LKVNSGS  +   R   D T  
Sbjct: 284 RQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFGLKVNSGSQVKDSSRIAPDATPS 343

Query: 351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410
            P+SSLS  KGVLP+YFSSEWSVAQFRLVEG+ YI AFGHQKNTVVILGMDGSFYRCQFD
Sbjct: 344 SPSSSLSLFKGVLPRYFSSEWSVAQFRLVEGTQYIAAFGHQKNTVVILGMDGSFYRCQFD 403

Query: 411 PVNGGEMTQLEYNNFLKPEAAF 432
           PVNGGEM+QLEY+N LKP + F
Sbjct: 404 PVNGGEMSQLEYHNCLKPPSVF 425

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582144|ref|XP_002531866.1| WD-repeat protein, putative [Ricinus communis] gi|223528474|gb|EEF30503.1| WD-repeat protein, putative [Ricinus communis]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/407 (81%), Positives = 356/407 (87%), Gaps = 19/407 (4%)

Query: 40  QLQSLESFSS-MPQDE--PDSFSPSIPESNPNYQMPLPSPAESTSSSPPP----TLLHIS 92
           Q QS ++ SS MPQD   PD   P     NPNY       A+S+++SPP     +LLH+S
Sbjct: 46  QSQSYDTLSSIMPQDHCIPDHSDP-----NPNYHHHARPAADSSTTSPPSSPPISLLHLS 100

Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIG--VVEMLFRCNILALVGGGPD 150
           FNQD GCFAAGTDHGFRIYNCDPFREIFRRDF+RGGG G  VVEMLFRCNILALVGGG D
Sbjct: 101 FNQDFGCFAAGTDHGFRIYNCDPFREIFRRDFDRGGGGGIGVVEMLFRCNILALVGGGSD 160

Query: 151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
           PQYP NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI
Sbjct: 161 PQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 220

Query: 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
           ETIANPKGLCAVS G GSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG
Sbjct: 221 ETIANPKGLCAVSHGAGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 280

Query: 271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
           QLLAT+STKGTLVR+FNT DG+LLQEVRRGADRAEIYS+AFSS AQWLAVSSDKGTVHVF
Sbjct: 281 QLLATASTKGTLVRVFNTADGSLLQEVRRGADRAEIYSVAFSSTAQWLAVSSDKGTVHVF 340

Query: 331 NLKVNSGSARSE-PRSTSDPTL----PTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI 385
           +LK   GS  ++  R+T+DP +    PTSSLSF KGVLPKYFSSEWSVAQFRLVEGS YI
Sbjct: 341 SLKTTPGSLGTDRSRNTTDPNVGVSSPTSSLSFFKGVLPKYFSSEWSVAQFRLVEGSHYI 400

Query: 386 VAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKPEAAF 432
           VAFGHQKNTVVILG+DGSFYRCQFDPVNGGEM+QLE++NFLKPEAAF
Sbjct: 401 VAFGHQKNTVVILGLDGSFYRCQFDPVNGGEMSQLEFHNFLKPEAAF 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775635|emb|CAN67189.1| hypothetical protein VITISV_032850 [Vitis vinifera]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 329/448 (73%), Positives = 357/448 (79%), Gaps = 36/448 (8%)

Query: 1   MAALSAYSSP-WPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFS 59
           MA L+A SS  WP      NPNP+PNS     +S +   +Q  +++  ++M Q +    S
Sbjct: 1   MATLTAVSSASWP------NPNPSPNSTF---LSQQSHPEQYPAVQDPTAMRQHQGTGLS 51

Query: 60  PSIPE-----SNPNY---QMPLPSPAE--STSSSPPPTLLHISFNQDHGCFAAGTDHGFR 109
               E     S+PN+   Q P  +  E  S S+S  P+LLHISFNQDHGCFAAGTD+GFR
Sbjct: 52  GDGGEDESFSSSPNHHTVQSPNSNLREVVSYSTSSIPSLLHISFNQDHGCFAAGTDNGFR 111

Query: 110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169
           IYNCDPFREIFRRDF+RGGGIGVVEMLFRCNILALVGGGP+PQYPLNKVMIWDDHQSRCI
Sbjct: 112 IYNCDPFREIFRRDFDRGGGIGVVEMLFRCNILALVGGGPEPQYPLNKVMIWDDHQSRCI 171

Query: 170 GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229
           GELSFRSEVR+VKLRRDRIIVVLEQKIF+YNFADLKLLHQIETIANP+GLCAVSQ   SL
Sbjct: 172 GELSFRSEVRAVKLRRDRIIVVLEQKIFLYNFADLKLLHQIETIANPRGLCAVSQLTASL 231

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           VLVCPGLQKGQVRVEHYAS+RTKF  AHDSR+ACFALT DGQLLAT+STKGTLVRIFNT 
Sbjct: 232 VLVCPGLQKGQVRVEHYASRRTKFFAAHDSRLACFALTTDGQLLATASTKGTLVRIFNTS 291

Query: 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPRSTSD 348
           DGT LQEVRRGADRAE           WLAVSSDKGTVHVF LKVNSGS    +    SD
Sbjct: 292 DGTRLQEVRRGADRAE-----------WLAVSSDKGTVHVFGLKVNSGSLGNDKSHGASD 340

Query: 349 PTLPTS----SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSF 404
             L  +    SLSFIKGVLPKYFSSEWSVAQFRL EGS YIVAFGHQKNTVVILGMDGSF
Sbjct: 341 ANLAVASSGLSLSFIKGVLPKYFSSEWSVAQFRLHEGSQYIVAFGHQKNTVVILGMDGSF 400

Query: 405 YRCQFDPVNGGEMTQLEYNNFLKPEAAF 432
           YRCQFDPV GGEMTQLEY+NFLKPE AF
Sbjct: 401 YRCQFDPVTGGEMTQLEYHNFLKPEEAF 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821186|ref|XP_002878476.1| AT3g62770/F26K9_200 [Arabidopsis lyrata subsp. lyrata] gi|297324314|gb|EFH54735.1| AT3g62770/F26K9_200 [Arabidopsis lyrata subsp. lyrata]

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 313/410 (76%), Positives = 342/410 (83%), Gaps = 17/410 (4%)

Query: 33  SSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHIS 92
           S  D+ D+  SL+SFSSM      S +   P  N N Q P+  P  +   +PPP++LH+S
Sbjct: 30  SHRDRGDETDSLDSFSSM------SLNSDEPNQNSN-QSPISPPTPNLPVTPPPSVLHLS 82

Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQDH CFA GTD GFRI NCDPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQ
Sbjct: 83  FNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQ 142

Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
           YP NKVMIWDDHQ RCIGELSFRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIET
Sbjct: 143 YPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIET 202

Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQL 272
           IANPKGLCAVSQGVGS+VLVCPGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG L
Sbjct: 203 IANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHL 262

Query: 273 LATSSTKGTLVRIFNTLDGTLLQE--------VRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           LAT+S+KGTLVR+FNT+DGTL QE        VRRGADRAEIYSLAFSSNAQWLAVSSDK
Sbjct: 263 LATASSKGTLVRVFNTVDGTLRQESHRDVTLQVRRGADRAEIYSLAFSSNAQWLAVSSDK 322

Query: 325 GTVHVFNLKVNSGS-ARSEPRSTSDPTLPTSSLSFIK-GVLPKYFSSEWSVAQFRLVEGS 382
           GTVHVF LKVNSGS  +   R   D T  + S S     VLPKYFSSEWSVAQFRLVEG+
Sbjct: 323 GTVHVFGLKVNSGSQVKDSSRIAPDATPSSPSSSLSLFKVLPKYFSSEWSVAQFRLVEGT 382

Query: 383 PYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKPEAAF 432
            YI AFGHQKNTVVILGMDGSFYRCQFDPVNGGEM+QLEY+N LKP + F
Sbjct: 383 QYIAAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMSQLEYHNCLKPPSVF 432

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7362757|emb|CAB83127.1| putative protein [Arabidopsis thaliana]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 325/449 (72%), Positives = 358/449 (79%), Gaps = 34/449 (7%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQEV--------RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPR 344
            QE         + GADRAEIYSLAFSSNAQWLAVSSDKGTVHVF LKVNSGS  +   R
Sbjct: 284 RQESGTSEDEIGKEGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFGLKVNSGSQVKDSSR 343

Query: 345 STSDPTLPTSSLSFIK-GVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS 403
              D T  + S S     VLP+YFSSEWSVAQFRLVEG+ YI AFGHQKNTVVILGMDGS
Sbjct: 344 IAPDATPSSPSSSLSLFKVLPRYFSSEWSVAQFRLVEGTQYIAAFGHQKNTVVILGMDGS 403

Query: 404 FYRCQFDPVNGGEMTQLEYNNFLKPEAAF 432
           FYRCQFDPVNGGEM+QLEY+N LKP + F
Sbjct: 404 FYRCQFDPVNGGEMSQLEYHNCLKPPSVF 432

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450815|ref|XP_002283982.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like isoform 1 [Vitis vinifera]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 312/381 (81%), Positives = 334/381 (87%), Gaps = 12/381 (3%)

Query: 62  IPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR 121
           +PES  N    +P P+   +  P PTLLH+SFNQDHGCF+AGTDHGFRIYNCDPFREIFR
Sbjct: 47  LPESEYN-DDSVP-PSADPTRFPAPTLLHLSFNQDHGCFSAGTDHGFRIYNCDPFREIFR 104

Query: 122 RDF-----ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS 176
           RDF       G GIGVVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ+RCIGELSFRS
Sbjct: 105 RDFCGDDGGSGTGIGVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQTRCIGELSFRS 164

Query: 177 EVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236
           EV+SV+LRRDRI+ +L QKIFVYNFADLKLLHQIETIANPKGLC VSQ  GS+VLVCPGL
Sbjct: 165 EVKSVRLRRDRIVAILLQKIFVYNFADLKLLHQIETIANPKGLCEVSQLSGSMVLVCPGL 224

Query: 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
            KGQVRVEHY SKRTKFIMAHDSRIACFALTQDG+LLATSS+KGTLVRIFNTLDGTLLQE
Sbjct: 225 LKGQVRVEHYNSKRTKFIMAHDSRIACFALTQDGRLLATSSSKGTLVRIFNTLDGTLLQE 284

Query: 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE-PRSTSDPTL---- 351
           VRRGADRAEIYS+AFSS+AQWLAVSSDKGTVHVF+LKV SGS  S+  RS+S+P L    
Sbjct: 285 VRRGADRAEIYSVAFSSSAQWLAVSSDKGTVHVFSLKVESGSLGSDRSRSSSEPNLSVPS 344

Query: 352 PTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411
             SSLSF+KGVLP+YFSSEWSVAQFRL EGS YIVAFGHQKNTVVILGMDGSFYRCQFDP
Sbjct: 345 AVSSLSFMKGVLPRYFSSEWSVAQFRLHEGSQYIVAFGHQKNTVVILGMDGSFYRCQFDP 404

Query: 412 VNGGEMTQLEYNNFLKPEAAF 432
           V GGEMTQLEY NFLKPE  F
Sbjct: 405 VAGGEMTQLEYYNFLKPEETF 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132364|ref|XP_002321321.1| predicted protein [Populus trichocarpa] gi|222862094|gb|EEE99636.1| predicted protein [Populus trichocarpa]

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 307/352 (87%), Positives = 319/352 (90%), Gaps = 9/352 (2%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIG----VVEMLFRCNILA 143
           LLH+SFNQD GCFAAGTDHGFRIYNCDPFREIFRRDF+  G  G     VEMLFRCN+LA
Sbjct: 1   LLHVSFNQDSGCFAAGTDHGFRIYNCDPFREIFRRDFDGSGNSGGGIGAVEMLFRCNVLA 60

Query: 144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD 203
           LVGGGPDPQYP NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD
Sbjct: 61  LVGGGPDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD 120

Query: 204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIAC 263
           LKLLHQIETIANPKGLCAVS G GSLVLVCPGLQKGQVRVEHYASKRTKFIM HDSR AC
Sbjct: 121 LKLLHQIETIANPKGLCAVSHGAGSLVLVCPGLQKGQVRVEHYASKRTKFIMVHDSRTAC 180

Query: 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323
           FALTQDGQLLAT+STKGTLVRIFNT DGTLLQEVRRGADRAE+YSLAFSS AQWLAVSSD
Sbjct: 181 FALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEVYSLAFSSTAQWLAVSSD 240

Query: 324 KGTVHVFNLKVNSGS-ARSEPRSTSDPTL----PTSSLSFIKGVLPKYFSSEWSVAQFRL 378
           KGTVHVF+LK+N GS      +ST++P L    P SSLSF KGVLPKYFSSEWSVAQF L
Sbjct: 241 KGTVHVFSLKINPGSPVIDRSQSTNEPNLALTSPASSLSFFKGVLPKYFSSEWSVAQFHL 300

Query: 379 VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKPEA 430
           VEGS YIVAFGHQKNTVVILG+DGSFYRCQFDPVNGGEMTQLEY+NFLKPEA
Sbjct: 301 VEGSQYIVAFGHQKNTVVILGLDGSFYRCQFDPVNGGEMTQLEYHNFLKPEA 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436529|ref|XP_004136045.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Cucumis sativus] gi|449533312|ref|XP_004173620.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Cucumis sativus]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/436 (72%), Positives = 341/436 (78%), Gaps = 20/436 (4%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSP 60
           M  LSA+ SP        +      +            D   S E F           S 
Sbjct: 1   METLSAFPSPPWPNPNPNSNPSPNPNPNPNPNPPSAVADS-SSSERFD----------SD 49

Query: 61  SIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIF 120
           S+   +P    P   P  S      P+LLH+SFNQDHGCFAAGTD GFRIYNCDPFREIF
Sbjct: 50  SVSSVDPTGLSPAVEPPASQ-----PSLLHLSFNQDHGCFAAGTDRGFRIYNCDPFREIF 104

Query: 121 RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS 180
           RRDF+RGGG+GVVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQSRCIGELSFRS VR 
Sbjct: 105 RRDFDRGGGVGVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQSRCIGELSFRSAVRG 164

Query: 181 VKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240
           V+L+RDRIIV+LEQK+FVYNFADLKLLHQIETIANPKGLCAVSQ   SLVLVCPGLQKGQ
Sbjct: 165 VRLQRDRIIVILEQKVFVYNFADLKLLHQIETIANPKGLCAVSQLSTSLVLVCPGLQKGQ 224

Query: 241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300
           VRVEHYAS+RTKFIMAHDSRIACFALT +GQLLAT+STKGTLVRIFNT DG LLQEVRRG
Sbjct: 225 VRVEHYASRRTKFIMAHDSRIACFALTTNGQLLATASTKGTLVRIFNTFDGNLLQEVRRG 284

Query: 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT----SSL 356
           ADRAEIYSLAFSS AQWLAVSSDKGTVHVF+LKVNSGS  ++    +D +L      SS 
Sbjct: 285 ADRAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKVNSGSLGNDMSHQNDSSLSVAPSGSSF 344

Query: 357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGE 416
           SFIKGVLPKYF SEWSVAQFRL EGS Y+VAFGHQKNTVVILGMDGSFYRCQFD VNGGE
Sbjct: 345 SFIKGVLPKYFKSEWSVAQFRLHEGSQYVVAFGHQKNTVVILGMDGSFYRCQFDSVNGGE 404

Query: 417 MTQLEYNNFLKPEAAF 432
           MTQLEY+NFL PE AF
Sbjct: 405 MTQLEYHNFLMPEEAF 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131184|ref|XP_002321021.1| predicted protein [Populus trichocarpa] gi|222861794|gb|EEE99336.1| predicted protein [Populus trichocarpa]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 309/375 (82%), Positives = 327/375 (87%), Gaps = 10/375 (2%)

Query: 68  NYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERG 127
           N+   + SP +STS+ P  +LLH+SFNQD GCFAAGTDHGFRIYNCDP REIFRRDF+  
Sbjct: 20  NHNTSISSPPQSTSTPPLISLLHLSFNQDFGCFAAGTDHGFRIYNCDPLREIFRRDFDGD 79

Query: 128 GGIG-----VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVK 182
           G  G     VVEMLFRCNILA+VGGGPDPQY  NKVMIWDDHQSRCIGELSFRSEVRSVK
Sbjct: 80  GNSGGGGIGVVEMLFRCNILAIVGGGPDPQYSPNKVMIWDDHQSRCIGELSFRSEVRSVK 139

Query: 183 LRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242
           LRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVS G GSLVLVCPGLQKGQVR
Sbjct: 140 LRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSHGAGSLVLVCPGLQKGQVR 199

Query: 243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD 302
           VEHYASKRTKFIMAHDSRIACF+LTQDGQLL T+STKGTLVR+FNT DGTLLQEVRRGAD
Sbjct: 200 VEHYASKRTKFIMAHDSRIACFSLTQDGQLLVTASTKGTLVRVFNTADGTLLQEVRRGAD 259

Query: 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPRSTSDPTL----PTSSLS 357
           RAEIYSLAFSS AQWLAVSSDKGTVHVF+LK+N GS      +ST +P L    P SSLS
Sbjct: 260 RAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKINPGSPGIDRSQSTDEPNLAVTSPASSLS 319

Query: 358 FIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEM 417
           F KGVLPKYFSSEWSVAQF L EGS YIVAFGHQKNTVVILG+DGSFYRCQ+DPVNGGEM
Sbjct: 320 FFKGVLPKYFSSEWSVAQFHLPEGSQYIVAFGHQKNTVVILGLDGSFYRCQYDPVNGGEM 379

Query: 418 TQLEYNNFLKPEAAF 432
           TQLEY+NFL P  A 
Sbjct: 380 TQLEYHNFLNPPEAI 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
TAIR|locus:2081705	425	AtATG18a "autophagy 18a" [Arab	0.905	0.92	0.758	7.5e-160
UNIPROTKB|Q8LR61	457	P0423A12.30 "Putative WD repea	0.789	0.746	0.753	2.7e-139
UNIPROTKB|Q5VQF8	417	OJ1276_B06.19 "Putative unchar	0.585	0.606	0.675	2.6e-117
TAIR|locus:2102614	391	ATG18D "homolog of yeast autop	0.782	0.864	0.623	3e-117
TAIR|locus:2058450	393	ATG18C "AT2G40810" [Arabidopsi	0.562	0.618	0.692	3.3e-117
UNIPROTKB|Q0DKE9	382	Os05g0169200 "Os05g0169200 pro	0.564	0.638	0.540	6.9e-96
DICTYBASE|DDB_G0282581	350	wdr45l "WD repeat domain phosp	0.763	0.942	0.497	1.3e-84
TAIR|locus:2156779	374	G18E "AT5G05150" [Arabidopsis	0.743	0.858	0.492	4.7e-80
UNIPROTKB|Q22UW9	351	TTHERM_00577340 "WD repeat dom	0.763	0.940	0.463	5.4e-79
UNIPROTKB|Q640T2	344	wdr45b "WD repeat domain phosp	0.743	0.933	0.457	6.5e-74

TAIR|locus:2081705 AtATG18a "autophagy 18a" [Arabidopsis thaliana (taxid:3702)]

 Score = 1557 (553.2 bits), Expect = 7.5e-160, P = 7.5e-160
 Identities = 307/405 (75%), Positives = 331/405 (81%)

Query:    33 SSEDQTDQLQSLESFSSMP--QDEPDSFSPSIPESNPNYQMXXXXXXXXXXXXXXXXXXH 90
             S  D+ D+  SL+SFSSM    DEP+  S   P S P   +                  H
Sbjct:    30 SHRDRVDEPDSLDSFSSMSLNSDEPNQTSNQSPLSPPTPNLPVMPPPSVL---------H 80

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +SFNQDH CFA GTD GFRI NCDPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPD
Sbjct:    81 LSFNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPD 140

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
             PQYP NKVMIWDDHQ RCIGELSFRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQI
Sbjct:   141 PQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQI 200

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ETIANPKGLCAVSQGVGS+VLVCPGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG
Sbjct:   201 ETIANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDG 260

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+S+KGTLVRIFNT+DGTL QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF
Sbjct:   261 HLLATASSKGTLVRIFNTVDGTLRQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 320

Query:   331 NLKVNSGS-ARSEPRXX--XXXXXXXXXXXFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387
              LKVNSGS  +   R                 KGVLP+YFSSEWSVAQFRLVEG+ YI A
Sbjct:   321 GLKVNSGSQVKDSSRIAPDATPSSPSSSLSLFKGVLPRYFSSEWSVAQFRLVEGTQYIAA 380

Query:   388 FGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKPEAAF 432
             FGHQKNTVVILGMDGSFYRCQFDPVNGGEM+QLEY+N LKP + F
Sbjct:   381 FGHQKNTVVILGMDGSFYRCQFDPVNGGEMSQLEYHNCLKPPSVF 425

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0031090 "organelle membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006914 "autophagy" evidence=RCA;IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0042594 "response to starvation" evidence=IEP;IMP

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0048102 "autophagic cell death" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

UNIPROTKB|Q8LR61 P0423A12.30 "Putative WD repeat domain 45" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1363 (484.9 bits), Expect = 2.7e-139, P = 2.7e-139
 Identities = 266/353 (75%), Positives = 290/353 (82%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER---------GGGIGVVEMLFRCN 140
             HISFNQD+GCFAAGT  GFRIYNCDPFREIFRRD            GGGIGVVEMLFRCN
Sbjct:   101 HISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGVVEMLFRCN 160

Query:   141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYN 200
             ILALVGGG  P YP NKVMIWDDHQSRCIGELSFRS VR V+LRRDRIIVVLE KIFVYN
Sbjct:   161 ILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVLENKIFVYN 220

Query:   201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR 260
             FADLKL+HQIET  NPKGLCAVSQ  GS+VLVCPG QKGQVRVEHY +++TKFI AH SR
Sbjct:   221 FADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTKFINAHTSR 280

Query:   261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320
             +ACFAL+QDG+L+AT+STKGTLVRI+N  +G LLQEVRRGADRAEIYSLAFS+N Q+LAV
Sbjct:   281 VACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFSNNLQYLAV 340

Query:   321 SSDKGTVHVFNLKVNSGSARSE---PRXXXXXXXXXXXXXFIKGVLPKYFSSEWSVAQFR 377
             SSDKGT+HVFNLK+N G   ++   P              FIKGVLPKYF SEWSVAQFR
Sbjct:   341 SSDKGTIHVFNLKINVGLTTNDKPLPAPDPDVPHISPSLSFIKGVLPKYFHSEWSVAQFR 400

Query:   378 LVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKPEA 430
             L EG  YIVAFGH+KNTV ++GMDGSFYRCQFDPVNGGEM QLE  NFLKP +
Sbjct:   401 LHEGEQYIVAFGHEKNTVAVVGMDGSFYRCQFDPVNGGEMLQLECYNFLKPSS 453

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q5VQF8 OJ1276_B06.19 "Putative uncharacterized protein OJ1276_B06.19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 922 (329.6 bits), Expect = 2.6e-117, Sum P(2) = 2.6e-117
 Identities = 173/256 (67%), Positives = 209/256 (81%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD GCFAAGT +GFRI+NCDPF+E FRRD  + GG G+VEMLFRCNILALVGGG +
Sbjct:    50 VSWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDL-KSGGFGIVEMLFRCNILALVGGGSN 108

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
               YP NKVMIWDDH+S CIGE +FRS+VR+VKL +D I++VLE+KI+VYNF DLKLLHQI
Sbjct:   109 AHYPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQI 168

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ET +NPKGLC +S    + VL CPG+ +G VRVEH+  K T+ I AHDS I+C ALT DG
Sbjct:   169 ETQSNPKGLCCLSHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISCMALTMDG 228

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+S KGTL+RIFNT+DGT LQEVRRG D+A+IYS+A S N QWLAVSSDKGTVH+F
Sbjct:   229 LLLATASMKGTLIRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQWLAVSSDKGTVHIF 288

Query:   331 NLKVN-SGS-ARSEPR 344
             +L+V  +G  A +E R
Sbjct:   289 SLRVRVAGEDASNEQR 304

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2102614 ATG18D "homolog of yeast autophagy 18 (ATG18) D" [Arabidopsis thaliana (taxid:3702)]

 Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
 Identities = 220/353 (62%), Positives = 270/353 (76%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD+ CFAAGT HGFRIYNC+PF+E FRR+  + GG  +VEMLFR NILALVGGGP+
Sbjct:    39 VSWNQDYSCFAAGTSHGFRIYNCEPFKETFRREL-KDGGFKIVEMLFRSNILALVGGGPN 97

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              QYP NKV+IWDDHQ RCI E +FRSE+R+VKLRRDRI+VVLE KI+VYNF DL+LLHQI
Sbjct:    98 SQYPSNKVLIWDDHQGRCISEFTFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQI 157

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             E +ANP+GLC +S  + + VL CPG+++G+VRVEH+     + I AHDS IAC  LT DG
Sbjct:   158 ENMANPRGLCCLSHHMNTSVLACPGIRRGEVRVEHFGLNMVQIINAHDSNIACMTLTLDG 217

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+STKGTL+RIFNT+DGT LQEVRRG DRA+IYS+A S N QWLAVSSDKGTVH+F
Sbjct:   218 LLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIF 277

Query:   331 NLKV-----------NSGSARS-EPRXXXXXXXX-XXXXXFIKGVLPKYFSSEWSVAQFR 377
             +L+V           +  S+ S +P               F++GVLPKYFSSEWS +QF 
Sbjct:   278 SLRVRVIGEDAYSTEHETSSNSLQPLVSPASGANPGSSLSFLRGVLPKYFSSEWSFSQFH 337

Query:   378 LVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKPEA 430
             + E + Y  AFG Q NT+ I+G+DGSFYRC FDPVNGGEMTQLE+ +FLK ++
Sbjct:   338 VPEVTQYFAAFGAQ-NTIAIIGLDGSFYRCNFDPVNGGEMTQLEHFHFLKQDS 389

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2058450 ATG18C "AT2G40810" [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
 Identities = 169/244 (69%), Positives = 201/244 (82%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             + +NQD  CFAAGT HGFRIYNC+PF+E FRR+  + GG  +VEMLFR NILALVGGGP+
Sbjct:    35 VCWNQDSSCFAAGTSHGFRIYNCEPFKETFRREL-KDGGFKIVEMLFRSNILALVGGGPN 93

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              QYP +KV+IWDDHQSRCI E +FRSE+R+VKLRRDRI+VVLE KI+VYNF DL+LLHQI
Sbjct:    94 SQYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQI 153

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ET ANP+GLC +S    + VL CPGL +G++RVEH+     + I AHDS IAC  LT DG
Sbjct:   154 ETQANPRGLCCLSHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDG 213

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+STKGTL+RIFNT+DGT LQEVRRG DRA+IYS+A S N QWLAVSSDKGTVH+F
Sbjct:   214 LLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIF 273

Query:   331 NLKV 334
             +L+V
Sbjct:   274 SLRV 277

GO:0003674 "molecular_function" evidence=ND

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q0DKE9 Os05g0169200 "Os05g0169200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 726 (260.6 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
 Identities = 132/244 (54%), Positives = 174/244 (71%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD+ CF A T +GFR+++C PF E  RR F   GGIG+ EMLFR +I  L G   +
Sbjct:    20 VSWNQDNSCFIAATTNGFRVFSCKPFHETMRRMFGPNGGIGIAEMLFRTSIFGLAGAESN 79

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              ++P   + +WDD+  R I + +F SE+R+V+L +D  +VVLE+ I VY F DL+L +Q 
Sbjct:    80 TEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEKTINVYRFKDLRLFYQA 139

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
              T++NP GLC +S    + V  CPG  KGQV +EH+  K T+FI AHDS ++C  +  DG
Sbjct:   140 RTVSNPNGLCCLSHHANASVFACPGTSKGQVLIEHFGLKETRFIAAHDSPLSCMTMALDG 199

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+S +GTL+RIFNT DGT +QEVRRG DRAEIYS+A S N QWLAVSSDKGTVHVF
Sbjct:   200 TLLATASVRGTLIRIFNTRDGTCVQEVRRGLDRAEIYSIALSPNVQWLAVSSDKGTVHVF 259

Query:   331 NLKV 334
             +L+V
Sbjct:   260 SLRV 263

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

DICTYBASE|DDB_G0282581 wdr45l "WD repeat domain phosphoinositide-interacting protein 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 169/340 (49%), Positives = 237/340 (69%)

Query:    92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP 151
             +FNQD+ CFA GT+ GF I++CDPF+E F R F+  GG+G+VEMLFRCNILA+VGGG  P
Sbjct:    17 NFNQDYSCFACGTEKGFLIFSCDPFKERFGRVFD--GGVGIVEMLFRCNILAIVGGGKKP 74

Query:   152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIE 211
             +Y  N+VMIWDD+Q++CI +L F+SEV++VKLRRDRI+VVLE K+++YNF+DL+L+HQ+E
Sbjct:    75 RYTPNQVMIWDDYQNKCIAKLEFKSEVKAVKLRRDRIVVVLENKVYLYNFSDLQLVHQLE 134

Query:   212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ 271
             T  NPKG+CA+  G  + VL CPGL+ G V VE Y  K+T+ I AH+  ++  AL +DG 
Sbjct:   135 TTNNPKGICAICPGTVN-VLACPGLKPGYVHVELYDLKQTQIIPAHEGALSQIALNKDGT 193

Query:   272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331
             LLAT+S KGTL+RIF+T  G  ++E+RRG +RAEIYS+AF++++  L VSSDK T H+F+
Sbjct:   194 LLATASEKGTLIRIFDTATGEKVKELRRGTNRAEIYSIAFNNDSTALCVSSDKNTGHIFD 253

Query:   332 LKVNSGSARSEPRXXXXXXXXXXXXXFIKGVLP-KYFSSEWSVAQFRLVEGSPYIVAFGH 390
             L +   S + E               F+  +LP  YF SEWS  QF++ E S  I AFG 
Sbjct:   254 LSMAKPSPKEED---TQQKNRQSTFSFMGDILPTNYFKSEWSAVQFQIPE-SRSICAFGS 309

Query:   391 QKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY-NNFLKPE 429
               N++ ++   G  Y+  +D  + GE  + E  + F++ E
Sbjct:   310 TPNSINVICASGICYKYTYD-FSKGECKREENPHQFIENE 348

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2156779 G18E "AT5G05150" [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 167/339 (49%), Positives = 224/339 (66%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGG 148
             +++NQ    F  GT+HGF +Y+C P   + I R   E   G  V EMLF  N+ A VG G
Sbjct:    36 VAWNQVCSGFIVGTNHGFNVYSCKPMIKKSISRAPHE--SGFKVAEMLFLSNLFAFVGNG 93

Query:   149 -PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLL 207
               + +YP NKV +WDD+++ C+ EL+F+SEV +VKL R+ ++VVL+Q I+VY F +LK+ 
Sbjct:    94 YNNSEYPPNKVFVWDDYRNCCLSELTFKSEVIAVKLAREHVVVVLKQNIYVYTFNNLKVD 153

Query:   208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT 267
               IET+ NPKGLC V+      VL CPG   GQV+V        KFI AHDS IAC  LT
Sbjct:   154 RVIETLMNPKGLCCVTHVESKAVLACPGFHPGQVQVHDLRWNVIKFIKAHDSAIACMTLT 213

Query:   268 QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 327
              DG LLAT+STKGTL+RIFN +DGTLLQE RRG +RAEIY++A SSN +W+A SS+KGT+
Sbjct:   214 LDGSLLATASTKGTLIRIFNAVDGTLLQEFRRGVERAEIYNVAISSNLKWVAASSEKGTL 273

Query:   328 HVFNLKVNSGSARSEPRXXXXXXXXXXXXXFIKGVLPKY-FSSEWSVAQFRLVEGSPYIV 386
             HVF L+ +  S   +P              FI+ +LPKY + +E S AQF L   + +IV
Sbjct:   274 HVFRLRPDILSF--DP---------ASSSSFIRVILPKYLYENERSFAQFSLPASTKFIV 322

Query:   387 AFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNF 425
              FG + NTV+++G+DGSF RC+FD  +GG+M +LE+  F
Sbjct:   323 GFGSE-NTVLLVGIDGSFRRCKFDHADGGQMVELEHKYF 360

GO:0006914 "autophagy" evidence=IBA

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006863 "purine nucleobase transport" evidence=RCA

UNIPROTKB|Q22UW9 TTHERM_00577340 "WD repeat domain phosphoinositide-interacting protein 3" [Tetrahymena thermophila SB210 (taxid:312017)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 157/339 (46%), Positives = 220/339 (64%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
             ++SFNQD+GCF+ GT+ GF IYN +PF++I+ R    GGGIG+VEML+RCNI+ALVGGG 
Sbjct:     9 YLSFNQDYGCFSCGTEDGFNIYNTEPFKQIYSRSV--GGGIGIVEMLYRCNIIALVGGGK 66

Query:   150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQ 209
              P++P  KV +WDD Q + I E++FRSEV++VKL+ DR+IVVLE +I+V+NFADLKL+  
Sbjct:    67 SPKFPPTKVQLWDDSQLKRIAEMNFRSEVKAVKLKADRVIVVLETRIYVHNFADLKLIDT 126

Query:   210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQD 269
             I+T  NP GLC+V+     ++L  P  + G+V V  Y+  +T  I AH S + C      
Sbjct:   127 IDTCPNPLGLCSVNTEGDEIILATPHKEVGEVNVHLYSDNKTISIRAHQSALNCLQTNPR 186

Query:   270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329
             G  LAT+S KGT++RI+NT  G LLQE+RRG++ A+IYS+AF     ++A SSD GT+H+
Sbjct:   187 GTKLATASQKGTIIRIYNTKKGELLQELRRGSEYAQIYSIAFHPKGTFVACSSDSGTIHI 246

Query:   330 FNLK----VNSGSARSEPRXXXXXXXXXXXXXFIKGVLPKYFSSEWSVAQFRLVEGSPYI 385
             F LK    +                       F+K ++P YF SEWS AQ R +  +   
Sbjct:   247 FALKQTEDLEPQGNNGNSSNGGTKSNPKSALKFLKFIVP-YFDSEWSFAQCR-INDTKAK 304

Query:   386 VAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNN 424
             VAFG   NT+V +  +G+ Y+  FD +NGGE  ++E  N
Sbjct:   305 VAFGPDDNTIVAVTYEGTIYKATFDNINGGEC-KIESTN 342

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q640T2 wdr45b "WD repeat domain phosphoinositide-interacting protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 156/341 (45%), Positives = 214/341 (62%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
             +  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGGG 
Sbjct:    15 YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGYVEMLFRCNYLALVGGGK 73

Query:   150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLH 208
              P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   LH
Sbjct:    74 KPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLH 133

Query:   209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFAL 266
               ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C AL
Sbjct:   134 VFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIAL 193

Query:   267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT 326
                G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD GT
Sbjct:   194 NLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDHGT 253

Query:   327 VHVFNLKVNSGSARSEPRXXXXXXXXXXXXXFIKGVLPKYFSSEWSVAQFRLVEGSPYIV 386
             VH+F        A  +P+                  LPKYFSS+WS ++F++  GSP + 
Sbjct:   254 VHIF--------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVPSGSPCVC 299

Query:   387 AFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLK 427
             AFG + N+V+ +  DGS+Y+ QF+P   GE T+  Y  FL+
Sbjct:   300 AFGTEPNSVIAICADGSYYKFQFNPK--GECTRDVYAQFLE 338

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023544001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (439 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	432
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 49/249 (19%), Positives = 100/249 (40%), Gaps = 20/249 (8%)

Query: 91  ISFNQDHG-CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
           ++F+ D         D   ++++ +    +      +G    V ++    +   L  G  
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTL---KGHTGPVRDVAASADGTYLASGSS 71

Query: 150 DPQYPLNKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK 205
           D       + +WD     C+  L    S V SV    D  I+     ++ I V++    K
Sbjct: 72  D-----KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126

Query: 206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACF 264
            L  +    +   + +V+       +     Q G +++ +    K    +  H   +   
Sbjct: 127 CLTTLRGHTDW--VNSVAFSPDGTFVAS-SSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           A + DG+ L +SS+ GT +++++   G  L  +R       + S+AFS +   LA  S+ 
Sbjct: 184 AFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLR--GHENGVNSVAFSPDGYLLASGSED 240

Query: 325 GTVHVFNLK 333
           GT+ V++L+
Sbjct: 241 GTIRVWDLR 249

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 18/194 (9%)

Query: 144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSE-VRSVKLRRDRIIVV---LEQKIFVY 199
           L     D       + +WD    +C+  L   ++ V SV    D   V     +  I ++
Sbjct: 108 LSSSSRD-----KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 200 NFADLKLLHQIETIANPKGLCAVSQ-GVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAH 257
           +    K +  +    +   + +V+    G  +L       G +++ +    K    +  H
Sbjct: 163 DLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKCLGTLRGH 218

Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW 317
           ++ +   A + DG LLA+ S  GT +R+++   G  +Q +        + SLA+S + + 
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKR 275

Query: 318 LAVSSDKGTVHVFN 331
           LA  S  GT+ +++
Sbjct: 276 LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.2 bits (126), Expect = 2e-07
 Identities = 47/239 (19%), Positives = 93/239 (38%), Gaps = 24/239 (10%)

Query: 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELSF--RSEVRSVKLR--- 184
            +  + F  +   L+ G  D       + +WD       I  L     S V  + L    
Sbjct: 67  SITSIAFSPDGELLLSGSSD-----GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD 121

Query: 185 RDRIIVVLE---QKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240
            + I++        + +++ +   KL+  +E  +      A S      +L       G 
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGT 179

Query: 241 VRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299
           +++ +    K    +  H   ++  A + DG LL  S +    +R+++   G LL+    
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358
           G   + + S  FS +   LA  S  GT+ +++L+    S+ S  R+ S  +    S++F
Sbjct: 240 GHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLR----SSSSLLRTLSGHSSSVLSVAF 292

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 56/262 (21%), Positives = 110/262 (41%), Gaps = 18/262 (6%)

Query: 79  STSSSPPPTLLHISFNQDHGCFAA--GTDHGFRIYNCDPFREIFRRDFERGGGIGVVEML 136
           ST +     +  ++F+ D G   A   +D   R+++    + +        G    V   
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS---GHSDSVVSS 248

Query: 137 FRCNILALVGGGPDPQYPLNKVMIWD-DHQSRCIGELSFRSE-VRSVKLRRDRIIVV--- 191
           F  +   L  G  D       + +WD    S  +  LS  S  V SV    D  ++    
Sbjct: 249 FSPDGSLLASGSSD-----GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303

Query: 192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251
            +  + +++    KLL  +    +   + ++S      +LV  G   G +R+    + + 
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
              +   S +   + + DG+++++ ST GT VR+++   G+LL+ +     R  + SL F
Sbjct: 364 LKTLEGHSNVLSVSFSPDGRVVSSGSTDGT-VRLWDLSTGSLLRNLDGHTSR--VTSLDF 420

Query: 312 SSNAQWLAVSSDKGTVHVFNLK 333
           S + + LA  S   T+ +++LK
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.5 bits (119), Expect = 9e-07
 Identities = 69/397 (17%), Positives = 140/397 (35%), Gaps = 24/397 (6%)

Query: 21  NPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAEST 80
             + +S +S   S   +  +L    +  S+           +     +  + LP  +   
Sbjct: 1   LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL 60

Query: 81  SSSPPPTLLHISFNQDHG-CFAAGTDHGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFR 138
                 ++  I+F+ D     +  +D   ++++ D   ++ +  +      +  + +   
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 139 C-NILALVGGGPDPQYPLNKVMIWD-DHQSRCIGELSF-RSEVRSVKLRRDRIIVVLE-- 193
             N + L     D       V +WD     + I  L      V S+    D  ++     
Sbjct: 121 DGNSILLASSSLD-----GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175

Query: 194 --QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-- 249
               I +++    K L  +                G L++       G +R+   ++   
Sbjct: 176 LDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLLIASGS-SDGTIRLWDLSTGKL 233

Query: 250 -RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
            R+      DS ++ F  + DG LLA+ S+ GT +R+++    + L     G     + S
Sbjct: 234 LRSTLSGHSDSVVSSF--SPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSGHSS-SVLS 289

Query: 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS 368
           +AFS + + LA  S  GTV +++L+       S      +  + + S S    +L    S
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLE-TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Query: 369 SEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFY 405
            + ++  + L  G P     GH     V    DG   
Sbjct: 349 DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVV 385

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313
           +  H   + C A + DG+LLAT S  GT +++++   G LL+          +  +A S+
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGT-IKVWDLETGELLR--TLKGHTGPVRDVAASA 61

Query: 314 NAQWLAVSSDKGTVHVFNLK 333
           +  +LA  S   T+ +++L+
Sbjct: 62  DGTYLASGSSDKTIRLWDLE 81

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.5 bits (93), Expect = 0.001
 Identities = 45/250 (18%), Positives = 95/250 (38%), Gaps = 21/250 (8%)

Query: 156 NKVMIWDDHQSRCIGELSF---RSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIE 211
             + +WD    + +         S V S       +     +  I +++      L +  
Sbjct: 221 GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT- 279

Query: 212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV---EHYASKRTKFIMAHDSRIACFALTQ 268
              +   + +V+      +L   G   G VR+   E      +  +  H+  ++  + + 
Sbjct: 280 LSGHSSSVLSVAFSPDGKLLAS-GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338

Query: 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH 328
           DG LL +  +    +R+++   G  L+ +   ++   + S++FS + + ++  S  GTV 
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN---VLSVSFSPDGRVVSSGSTDGTVR 395

Query: 329 VFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL--VEGSPYIV 386
           +++L     S  S  R+    T   +SL F      K  +S  S    RL  ++ S   V
Sbjct: 396 LWDL-----STGSLLRNLDGHTSRVTSLDFSPD--GKSLASGSSDNTIRLWDLKTSLKSV 448

Query: 387 AFGHQKNTVV 396
           +F      + 
Sbjct: 449 SFSPDGKVLA 458

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	432
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG2111	346	consensus Uncharacterized conserved protein, conta	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG2110	391	consensus Uncharacterized conserved protein, conta	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.98
KOG0296	399	consensus Angio-associated migratory cell protein	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.78
PRK03629	429	tolB translocation protein TolB; Provisional	99.78
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.77
PRK04922	433	tolB translocation protein TolB; Provisional	99.76
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.76
PRK05137	435	tolB translocation protein TolB; Provisional	99.76
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
KOG2321	703	consensus WD40 repeat protein [General function pr	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
KOG0649	325	consensus WD40 repeat protein [General function pr	99.72
KOG2315	566	consensus Predicted translation initiation factor	99.71
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.71
PRK02889	427	tolB translocation protein TolB; Provisional	99.7
KOG1334	559	consensus WD40 repeat protein [General function pr	99.7
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.7
PRK04922	433	tolB translocation protein TolB; Provisional	99.7
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.7
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.69
KOG4227	609	consensus WD40 repeat protein [General function pr	99.69
KOG1188	376	consensus WD40 repeat protein [General function pr	99.69
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.69
KOG0649	325	consensus WD40 repeat protein [General function pr	99.68
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.68
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.67
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.66
KOG2139	445	consensus WD40 repeat protein [General function pr	99.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.66
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.65
PRK00178	430	tolB translocation protein TolB; Provisional	99.65
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.63
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.63
KOG2139	445	consensus WD40 repeat protein [General function pr	99.62
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.61
PRK04792	448	tolB translocation protein TolB; Provisional	99.6
KOG1310	758	consensus WD40 repeat protein [General function pr	99.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.59
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.58
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.57
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.57
PRK00178	430	tolB translocation protein TolB; Provisional	99.57
PRK04792	448	tolB translocation protein TolB; Provisional	99.55
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.55
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.55
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.53
KOG2315	566	consensus Predicted translation initiation factor	99.53
PRK01029	428	tolB translocation protein TolB; Provisional	99.53
KOG2314	698	consensus Translation initiation factor 3, subunit	99.52
KOG1310	758	consensus WD40 repeat protein [General function pr	99.52
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.52
PRK01029	428	tolB translocation protein TolB; Provisional	99.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.51
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.5
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.48
KOG1334	559	consensus WD40 repeat protein [General function pr	99.48
PRK04043	419	tolB translocation protein TolB; Provisional	99.48
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.47
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.46
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.44
KOG2321	703	consensus WD40 repeat protein [General function pr	99.43
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.42
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.37
KOG4547	541	consensus WD40 repeat-containing protein [General	99.35
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.35
PRK04043	419	tolB translocation protein TolB; Provisional	99.32
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.31
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.3
COG4946	668	Uncharacterized protein related to the periplasmic	99.3
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.29
KOG4547	541	consensus WD40 repeat-containing protein [General	99.29
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.26
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.25
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.24
KOG2314	698	consensus Translation initiation factor 3, subunit	99.22
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.22
COG4946	668	Uncharacterized protein related to the periplasmic	99.22
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.21
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.21
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.19
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.16
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.14
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.13
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.13
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.11
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.06
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.03
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.01
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.01
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.0
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.0
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.99
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.97
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.97
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.96
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.95
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.94
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.93
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.92
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.9
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.87
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.87
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.85
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.81
KOG2695	425	consensus WD40 repeat protein [General function pr	98.79
PRK02888	635	nitrous-oxide reductase; Validated	98.79
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.79
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.77
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.75
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.74
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.73
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.71
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.7
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.67
KOG2695	425	consensus WD40 repeat protein [General function pr	98.67
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.67
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.66
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.63
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.63
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.58
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.49
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.47
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.46
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.45
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.43
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.42
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.39
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.39
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.39
PRK02888	635	nitrous-oxide reductase; Validated	98.38
KOG3621	726	consensus WD40 repeat-containing protein [General	98.38
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.36
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.36
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.34
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.34
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.34
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.32
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.32
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.31
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.3
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.29
COG3391	381	Uncharacterized conserved protein [Function unknow	98.29
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.19
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.18
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.12
COG3391	381	Uncharacterized conserved protein [Function unknow	98.11
KOG3621	726	consensus WD40 repeat-containing protein [General	98.09
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.09
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.07
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.04
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.01
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.98
PRK13616	591	lipoprotein LpqB; Provisional	97.92
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.91
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.9
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.86
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.86
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.85
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.83
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.83
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.8
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.73
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.73
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.73
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.72
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.71
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.63
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.59
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.57
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.55
KOG2395	644	consensus Protein involved in vacuole import and d	97.54
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.51
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.46
PRK13616	591	lipoprotein LpqB; Provisional	97.44
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.43
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.43
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.4
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.39
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.37
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.35
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.35
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.34
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.28
PRK10115	686	protease 2; Provisional	97.27
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.18
KOG2395	644	consensus Protein involved in vacuole import and d	97.08
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.06
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.01
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.0
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.91
PHA02713	557	hypothetical protein; Provisional	96.9
PRK10115	686	protease 2; Provisional	96.73
KOG2444	238	consensus WD40 repeat protein [General function pr	96.7
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.66
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.64
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.4
COG5167	776	VID27 Protein involved in vacuole import and degra	96.34
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.11
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.08
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.07
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.99
PHA02713	557	hypothetical protein; Provisional	95.94
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.84
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.74
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.71
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.63
KOG2444	238	consensus WD40 repeat protein [General function pr	95.53
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.42
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.4
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.28
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.16
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.16
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.14
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.13
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.09
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.09
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.04
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.04
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.92
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.84
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.78
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.67
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.49
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	94.43
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.29
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.24
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.15
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.07
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.01
COG5276	370	Uncharacterized conserved protein [Function unknow	93.94
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.91
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.82
COG5276	370	Uncharacterized conserved protein [Function unknow	93.79
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.76
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.74
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	93.53
PHA03098	534	kelch-like protein; Provisional	93.49
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.44
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.35
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.34
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.02
COG5167	776	VID27 Protein involved in vacuole import and degra	92.99
PHA03098	534	kelch-like protein; Provisional	92.99
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.91
COG4880	603	Secreted protein containing C-terminal beta-propel	92.89
KOG2247	615	consensus WD40 repeat-containing protein [General	92.51
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.43
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.85
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.8
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.72
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.71
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.56
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.26
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.25
COG4590	733	ABC-type uncharacterized transport system, permeas	91.2
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.08
PHA02790	480	Kelch-like protein; Provisional	90.84
COG4590	733	ABC-type uncharacterized transport system, permeas	90.79
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	90.73
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	90.17
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	90.14
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.06
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	90.04
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.52
KOG0783	1267	consensus Uncharacterized conserved protein, conta	89.36
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	89.18
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.81
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	88.48
KOG2247	615	consensus WD40 repeat-containing protein [General	88.3
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	88.26
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	88.24
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.17
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.97
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.5
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.41
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.26
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	87.23
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.86
COG1770	682	PtrB Protease II [Amino acid transport and metabol	86.75
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	86.51
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.45
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	86.39
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.35
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	84.99
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.86
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.72
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	83.61
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	83.46
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.6
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	82.48
PLN02153	341	epithiospecifier protein	82.04
KOG3616	1636	consensus Selective LIM binding factor [Transcript	81.84
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	81.68
PF14157	63	YmzC: YmzC-like protein; PDB: 3KVP_E.	81.3
COG3292	671	Predicted periplasmic ligand-binding sensor domain	81.18
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	80.87
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	80.2

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-47  Score=318.91  Aligned_cols=281  Identities=14%  Similarity=0.244  Sum_probs=246.1

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .....+|.++|.|++|+|+|+.|++|+ |.++|+||+++....  .+++ +|...|.+++|+||+..+++|+.|     |
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--~t~K-gH~~WVlcvawsPDgk~iASG~~d-----g  179 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--FTCK-GHKNWVLCVAWSPDGKKIASGSKD-----G  179 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc--eeec-CCccEEEEEEECCCcchhhccccC-----C
Confidence            367889999999999999999999998 666999999987766  5665 899999999999999999999999     9


Q ss_pred             eEEEEeCCCCceeE-Eee-cCCceEEEEEec-----CccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCC
Q 014007          157 KVMIWDDHQSRCIG-ELS-FRSEVRSVKLRR-----DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (432)
Q Consensus       157 ~v~iwd~~~~~~~~-~~~-~~~~v~~~~~~~-----~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (432)
                      .|++||.++|+++. .+. |...|++++|.|     ..+++++   ||.|+|||+..++++..+.+|..+|+++.|--+|
T Consensus       180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g  259 (480)
T KOG0271|consen  180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG  259 (480)
T ss_pred             eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc
Confidence            99999999997664 455 999999999976     4566774   9999999999999999999999999998886554


Q ss_pred             CcEEEEeecCCCCcEEEEEccCCc--------------------------------------------------------
Q 014007          227 GSLVLVCPGLQKGQVRVEHYASKR--------------------------------------------------------  250 (432)
Q Consensus       227 ~~~~~~~~g~~d~~i~i~d~~~~~--------------------------------------------------------  250 (432)
                         ++. +|+.|++|++|+...+.                                                        
T Consensus       260 ---liy-SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~  335 (480)
T KOG0271|consen  260 ---LIY-SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS  335 (480)
T ss_pred             ---eEE-ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence               333 57789999999865311                                                        


Q ss_pred             ------------------------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCce
Q 014007          251 ------------------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (432)
Q Consensus       251 ------------------------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i  306 (432)
                                              +..+.+|..-|+.+.||||++++|+++.|.. |++||.++|+.+..|++  |-..|
T Consensus       336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRG--Hv~~V  412 (480)
T KOG0271|consen  336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRG--HVAAV  412 (480)
T ss_pred             cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhh--cccee
Confidence                                    0133568888999999999999999999999 99999999999999997  55899


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE
Q 014007          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV  386 (432)
Q Consensus       307 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  386 (432)
                      +.++|+.|.++|++|+.|.++++||+++.+..                                   ..+.+|.+.|.++
T Consensus       413 YqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~-----------------------------------~DLpGh~DEVf~v  457 (480)
T KOG0271|consen  413 YQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK-----------------------------------QDLPGHADEVFAV  457 (480)
T ss_pred             EEEEeccCccEEEEcCCCceEEEEEeeeeeec-----------------------------------ccCCCCCceEEEE
Confidence            99999999999999999999999999998732                                   2366899999999


Q ss_pred             EEccCCCEEEEEecCCeEEEEE
Q 014007          387 AFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       387 ~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      .|+|||+.+++|+.|..+++|.
T Consensus       458 DwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  458 DWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EecCCCceeecCCCceEEEeec
Confidence            9999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6e-45  Score=308.58  Aligned_cols=278  Identities=16%  Similarity=0.182  Sum_probs=253.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC--eEEEecCCCCCCCCCCeE
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~~~v  158 (432)
                      .+-..+|..+.|+.|++.|++|+ ++.+++|+.......  ..|. +|...+.++.|+|.  ...+++++.|     |++
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--~~l~-gH~~~v~~~~fhP~~~~~~lat~s~D-----gtv  243 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--QTLR-GHTSRVGAAVFHPVDSDLNLATASAD-----GTV  243 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee--EEEe-ccccceeeEEEccCCCccceeeeccC-----Cce
Confidence            34577899999999999999999 777999998877444  6776 89999999999997  6799999999     999


Q ss_pred             EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      ++|++.+..++..+. |...|..++|+|+|+++++   |.+-++||++++..+...++|...+..++|.+||.   ++++
T Consensus       244 klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS---L~~t  320 (459)
T KOG0272|consen  244 KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS---LAAT  320 (459)
T ss_pred             eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc---eeec
Confidence            999999989999999 9999999999999999994   99999999999998888899999999999999996   3445


Q ss_pred             cCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007          235 GLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       235 g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~  313 (432)
                      |+.|..-+|||++++ .+..+.+|...|.+|+|+|+|..||||+.|++ ++|||++..+++.++..  |..-|+.+.|+|
T Consensus       321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipA--H~nlVS~Vk~~p  397 (459)
T KOG0272|consen  321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPA--HSNLVSQVKYSP  397 (459)
T ss_pred             cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceeccc--ccchhhheEecc
Confidence            779999999999995 56678899999999999999999999999999 99999999999988885  678999999998


Q ss_pred             -CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007          314 -NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (432)
Q Consensus       314 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  392 (432)
                       .|.+|++++.|++++||..++..++                                   .++.+|++.|.+++.++|+
T Consensus       398 ~~g~fL~TasyD~t~kiWs~~~~~~~-----------------------------------ksLaGHe~kV~s~Dis~d~  442 (459)
T KOG0272|consen  398 QEGYFLVTASYDNTVKIWSTRTWSPL-----------------------------------KSLAGHEGKVISLDISPDS  442 (459)
T ss_pred             cCCeEEEEcccCcceeeecCCCcccc-----------------------------------hhhcCCccceEEEEeccCC
Confidence             7889999999999999999988753                                   3577999999999999999


Q ss_pred             CEEEEEecCCeEEEEE
Q 014007          393 NTVVILGMDGSFYRCQ  408 (432)
Q Consensus       393 ~~l~~~~~dg~v~iw~  408 (432)
                      +++++++.|.++++|.
T Consensus       443 ~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  443 QAIATSSFDRTIKLWR  458 (459)
T ss_pred             ceEEEeccCceeeecc
Confidence            9999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.5e-43  Score=281.97  Aligned_cols=284  Identities=15%  Similarity=0.129  Sum_probs=252.6

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ..++.+|.+.|+++.|++|+++|++++ |+.+.|||.-+..+.....+   ....|..++|+|.+.++++|+-|     +
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---~s~WVMtCA~sPSg~~VAcGGLd-----N  119 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---PSSWVMTCAYSPSGNFVACGGLD-----N  119 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec---CceeEEEEEECCCCCeEEecCcC-----c
Confidence            478999999999999999999999999 55599999877666644444   78899999999999999999999     9


Q ss_pred             eEEEEeCCCC------ceeEEee-cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEec-CC
Q 014007          157 KVMIWDDHQS------RCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GV  226 (432)
Q Consensus       157 ~v~iwd~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~  226 (432)
                      ...||++.+.      ...+++. |.+.+.+..|-+|+.++..  |.+..+||+++++.+..+.+|...|..+.++| ++
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence            9999999855      3445566 9999999999999998884  78999999999999999999999999999999 55


Q ss_pred             CcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007          227 GSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (432)
Q Consensus       227 ~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~  305 (432)
                      +. + + +|+-|+..++||++. ...+.+.+|+..|+++.|.|+|.-+++|+.|++ .|+||++..+.+..+.......+
T Consensus       200 nt-F-v-Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~g  275 (343)
T KOG0286|consen  200 NT-F-V-SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICG  275 (343)
T ss_pred             Ce-E-E-ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCC
Confidence            43 3 3 356899999999998 456789999999999999999999999999999 99999999999999986555578


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI  385 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  385 (432)
                      |++++||..|++|.+|..|.++.+||.-.++.                                   ...+.+|++.|++
T Consensus       276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~-----------------------------------vg~L~GHeNRvSc  320 (343)
T KOG0286|consen  276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER-----------------------------------VGVLAGHENRVSC  320 (343)
T ss_pred             ceeEEEcccccEEEeeecCCceeEeeccccce-----------------------------------EEEeeccCCeeEE
Confidence            99999999999999999999999999988762                                   4467899999999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEE
Q 014007          386 VAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       386 ~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      +..+|||.-|++|+.|..++||.
T Consensus       321 l~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  321 LGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999994

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=8e-40  Score=268.35  Aligned_cols=333  Identities=59%  Similarity=1.001  Sum_probs=299.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~  166 (432)
                      ...+++|+.|...+++|.+.|.+||++++.++.....+. ..+..++.|.|..+..++++|+..|+|++++|.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~-~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFI-DGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccc-cCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            345599999999999999999999999998776556655 3448889999999999999999999999999999998888


Q ss_pred             ceeEEeecCCceEEEEEecCccEEEeCCeEEEEEcC-CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEE
Q 014007          167 RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (432)
Q Consensus       167 ~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d  245 (432)
                      +++.++....+|.++.+.++...++..+.|++|... +.+.++.+....++-..+++.|..+..++++.|..-|.|+|-|
T Consensus        86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d  165 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD  165 (346)
T ss_pred             cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence            899999999999999999999999999999999998 5688888888888888999999999999999999999999999


Q ss_pred             ccCCce---eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007          246 YASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       246 ~~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      +.....   ..+.+|...|.|++++.+|..+||++..|+.|||||..+|+++.+++.+.....|.+|+|||++.+||+++
T Consensus       166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS  245 (346)
T KOG2111|consen  166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS  245 (346)
T ss_pred             hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence            988554   78899999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCC
Q 014007          323 DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (432)
Q Consensus       323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  402 (432)
                      +.|+|+||.++.......           ..++..+.+.++|+|+...|.+..+...++....++|..+.+.++..+.||
T Consensus       246 dKgTlHiF~l~~~~~~~~-----------~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dg  314 (346)
T KOG2111|consen  246 DKGTLHIFSLRDTENTED-----------ESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADG  314 (346)
T ss_pred             CCCeEEEEEeecCCCCcc-----------ccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCC
Confidence            999999999987553221           114555556789999999999999999999999999999888899999999


Q ss_pred             eEEEEEecCCCCCcceEeeecccCCCccC
Q 014007          403 SFYRCQFDPVNGGEMTQLEYNNFLKPEAA  431 (432)
Q Consensus       403 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  431 (432)
                      ..+-+.+++.+++++.+.....+++.+.+
T Consensus       315 sy~k~~f~~~~~g~~~~~~~~~~~~~~~~  343 (346)
T KOG2111|consen  315 SYYKFKFDPKNGGESSRHEYSYFLSLQDD  343 (346)
T ss_pred             cEEEEEeccccccchhhhhhhheeecccC
Confidence            99999999999999999998888877654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=9e-40  Score=263.13  Aligned_cols=296  Identities=14%  Similarity=0.172  Sum_probs=242.4

Q ss_pred             CcccCCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEE---EeecccCcceeEEEEeeeCCeEEEecCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIF---RRDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  151 (432)
                      ....+.+|++.|+.++..+.+. .|..++ |..+.+|++......+   .+.+. +|...|..+..++++.+.++++.| 
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD-   84 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWD-   84 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEecccc-
Confidence            3457889999999999998854 566666 6669999996554333   56776 799999999999999999999999 


Q ss_pred             CCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeec-cCCcceEEEecCC
Q 014007          152 QYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGV  226 (432)
Q Consensus       152 ~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~  226 (432)
                          +++++||+.+++..+.|. |...|.+++|++|.+.+++   |.+|++|++............ .+.|.++.|+|+.
T Consensus        85 ----~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   85 ----GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             ----ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence                999999999999999998 9999999999999999985   899999998654433333333 6789999999998


Q ss_pred             CcEEEEeecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007          227 GSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (432)
Q Consensus       227 ~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~  305 (432)
                      ...+++++ +.|+.|++||+++-++ ..+.+|.+.++.+++||||.++++|+.||. +.+||++.++.++.+.   +...
T Consensus       161 ~~p~Ivs~-s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~---a~~~  235 (315)
T KOG0279|consen  161 SNPIIVSA-SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLE---AFDI  235 (315)
T ss_pred             CCcEEEEc-cCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEecc---CCCe
Confidence            77777764 5999999999999554 567899999999999999999999999999 9999999999998887   6689


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI  385 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  385 (432)
                      |.+++|+|+.-.|+.+. +..|+|||+.++..+........                     ..     ..+..+-....
T Consensus       236 v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~---------------------g~-----s~~~~~~~cls  288 (315)
T KOG0279|consen  236 VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGI---------------------GP-----SSKAGDPICLS  288 (315)
T ss_pred             EeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccc---------------------cc-----ccccCCcEEEE
Confidence            99999999977776665 55699999999886543311000                     00     11122234567


Q ss_pred             EEEccCCCEEEEEecCCeEEEEEec
Q 014007          386 VAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       386 ~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                      ++|++||..|++|-.|+.|++|.+.
T Consensus       289 laws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  289 LAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEcCCCcEEEeeecCCcEEEEEee
Confidence            8999999999999999999999873

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-38  Score=265.51  Aligned_cols=274  Identities=19%  Similarity=0.188  Sum_probs=208.6

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~  197 (432)
                      ..+. +|...|.++.|+|++..+++|+.|     .++++||+.+..+..+.+ |...|.+++|+|||..+++   ||.|+
T Consensus       109 sS~~-GH~e~Vl~~~fsp~g~~l~tGsGD-----~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~  182 (480)
T KOG0271|consen  109 SSIA-GHGEAVLSVQFSPTGSRLVTGSGD-----TTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR  182 (480)
T ss_pred             cccC-CCCCcEEEEEecCCCceEEecCCC-----ceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence            4454 899999999999999999999999     999999999999999999 9999999999999999995   99999


Q ss_pred             EEEcCCCee-eEEEeeccCCcceEEEecCC---CcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCE
Q 014007          198 VYNFADLKL-LHQIETIANPKGLCAVSQGV---GSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQL  272 (432)
Q Consensus       198 i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~  272 (432)
                      +||.+++++ ...+.+|...|++++|.|-.   ....+++ ++.||.|+|||+..+ .+..+.+|..+|+|+.|--+| +
T Consensus       183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las-~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-l  260 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS-SSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-L  260 (480)
T ss_pred             EecCCCCCcccccccCcccceeEEeecccccCCCccceec-ccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-e
Confidence            999998765 46788999999999997632   2224554 558999999999985 556788999999999997665 8


Q ss_pred             EEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC-----------CCCC-------------------------
Q 014007          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS-----------SNAQ-------------------------  316 (432)
Q Consensus       273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s-----------~~~~-------------------------  316 (432)
                      |++|+.|++ |++|+...|++.+++++|  ...|+.++.+           |.++                         
T Consensus       261 iySgS~Drt-Ikvw~a~dG~~~r~lkGH--ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e  337 (480)
T KOG0271|consen  261 IYSGSQDRT-IKVWRALDGKLCRELKGH--AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE  337 (480)
T ss_pred             EEecCCCce-EEEEEccchhHHHhhccc--chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence            999999999 999999887777666653  3455555544           2222                         


Q ss_pred             EEEEEeCCCeEEEEEecCCC-CCCCCCCCCCCCC---CCCCC----------CceeEeecccceeecceeeEEEEecCCC
Q 014007          317 WLAVSSDKGTVHVFNLKVNS-GSARSEPRSTSDP---TLPTS----------SLSFIKGVLPKYFSSEWSVAQFRLVEGS  382 (432)
Q Consensus       317 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (432)
                      .|++|++|+++.+|+-...+ ++....+|...+.   ++++.          +..++.+.-      ..-++++++|-+.
T Consensus       338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t------Gk~lasfRGHv~~  411 (480)
T KOG0271|consen  338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT------GKFLASFRGHVAA  411 (480)
T ss_pred             eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC------cchhhhhhhccce
Confidence            36666666666666554332 4444433322222   22222          222221111      1125679999999


Q ss_pred             ceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          383 PYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       383 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      |..++|+.|.++|++|+.|.++++|++..+
T Consensus       412 VYqvawsaDsRLlVS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  412 VYQVAWSADSRLLVSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             eEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence            999999999999999999999999998653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.1e-37  Score=251.01  Aligned_cols=283  Identities=17%  Similarity=0.210  Sum_probs=243.2

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ...+.+|.+.|+.+.|+|+|.+||+|+ |..|.+|++......+ ..++ +|...|+.+.|..++..+++++.|     .
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-~~lk-gHsgAVM~l~~~~d~s~i~S~gtD-----k  112 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-WVLK-GHSGAVMELHGMRDGSHILSCGTD-----K  112 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-eeec-cccceeEeeeeccCCCEEEEecCC-----c
Confidence            356788999999999999999999998 7779999976544433 3444 899999999999999999999999     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      +|+.||.++|+.++.++ |..-|+.+.-..-|..++ +   |+++++||+++...++++.. .-.++.+.|...+...+ 
T Consensus       113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~-  190 (338)
T KOG0265|consen  113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVI-  190 (338)
T ss_pred             eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEeccccccee-
Confidence            99999999999999999 999999998666666666 2   89999999998888777642 44567889988888765 


Q ss_pred             EeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC----CceEEEEEeCCCcC--
Q 014007          232 VCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----GTLLQEVRRGADRA--  304 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~----~~~~~~~~~~~~~~--  304 (432)
                        +|+-|+.|++||++. .....+.+|...|+.+..+|+|.++.+-+.|.+ +++||++.    .+++..+.++.|.-  
T Consensus       191 --sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfek  267 (338)
T KOG0265|consen  191 --SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEK  267 (338)
T ss_pred             --eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhh
Confidence              355899999999987 456778999999999999999999999999999 99999975    45688888766553  


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  384 (432)
                      ....++|+|+++.+.+|+.|..+++||....+.                                   +..+.+|.+.|+
T Consensus       268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~-----------------------------------lyklpGh~gsvn  312 (338)
T KOG0265|consen  268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI-----------------------------------LYKLPGHYGSVN  312 (338)
T ss_pred             hcceeeccCCCCccccccccceEEEeecccccE-----------------------------------EEEcCCcceeEE
Confidence            456789999999999999999999999987552                                   556789999999


Q ss_pred             EEEEccCCCEEEEEecCCeEEEE
Q 014007          385 IVAFGHQKNTVVILGMDGSFYRC  407 (432)
Q Consensus       385 ~~~~s~~~~~l~~~~~dg~v~iw  407 (432)
                      .++|+|...+|.+++.|.+|++=
T Consensus       313 ~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  313 EVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             EeeecCCCcEEEEeccCceeEee
Confidence            99999999999999999999973

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-38  Score=270.85  Aligned_cols=242  Identities=17%  Similarity=0.152  Sum_probs=221.6

Q ss_pred             CCcccCCCCCCCeEEEEEcCC--CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC
Q 014007           76 PAESTSSSPPPTLLHISFNQD--HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (432)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (432)
                      ...+.+.+|...|.++.|+|.  +..||+|+ |+.+++|++++...+  ..+. +|...|..++|+|+|.+|++++.|  
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l--~~l~-gH~~RVs~VafHPsG~~L~TasfD--  282 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL--QDLE-GHLARVSRVAFHPSGKFLGTASFD--  282 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--hhhh-cchhhheeeeecCCCceeeecccc--
Confidence            556889999999999999997  55789888 777999999876555  6776 899999999999999999999999  


Q ss_pred             CCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       153 ~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                         .+-++||+.++..+...+ |...|.+++|.+||.++++   |..-+|||+++|+++..+.+|..+|..++|+|+|..
T Consensus       283 ---~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~  359 (459)
T KOG0272|consen  283 ---STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYH  359 (459)
T ss_pred             ---cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceE
Confidence               999999999998877777 9999999999999999995   778999999999999999999999999999999864


Q ss_pred             EEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCce
Q 014007          229 LVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i  306 (432)
                      +  + +|+.|++++|||++. ..+.++.+|..-|+.|.|+| .|.+|+|++.|++ ++||..+++.+++.+.+  |++.|
T Consensus       360 l--A-Tgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He~kV  433 (459)
T KOG0272|consen  360 L--A-TGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HEGKV  433 (459)
T ss_pred             E--e-ecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--Cccce
Confidence            3  4 466899999999998 56778899999999999999 8899999999999 99999999999999996  77999


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEE
Q 014007          307 YSLAFSSNAQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       307 ~~~~~s~~~~~l~~~~~dg~i~iwd  331 (432)
                      .++.+++|++++++++.|+++++|.
T Consensus       434 ~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  434 ISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=241.29  Aligned_cols=272  Identities=17%  Similarity=0.232  Sum_probs=228.0

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc--eeEEee-
Q 014007           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-  173 (432)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~--~~~~~~-  173 (432)
                      -+|++++ |.+||+|...++.+.  .+++ +....|..+...|+...|+.++.      ..|++||+.+++  ++.++. 
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~--rTiq-h~dsqVNrLeiTpdk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~   81 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICS--RTIQ-HPDSQVNRLEITPDKKDLAAAGN------QHVRLYDLNSNNPNPVATFEG   81 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEE--EEEe-cCccceeeEEEcCCcchhhhccC------CeeEEEEccCCCCCceeEEec
Confidence            3677777 888999999999877  6665 67788999999999999999887      699999999875  588888 


Q ss_pred             cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc
Q 014007          174 FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (432)
Q Consensus       174 ~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~  250 (432)
                      |...|.++.|..+|+.+++   ||+++|||++...+.+.++ +..+|+.+.++|+...++   +|..+|.|++||+....
T Consensus        82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLi---s~dqsg~irvWDl~~~~  157 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELI---SGDQSGNIRVWDLGENS  157 (311)
T ss_pred             cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEE---eecCCCcEEEEEccCCc
Confidence            8899999999999999995   8999999999976666664 568999999999987665   35689999999999853


Q ss_pred             e-e-eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC------ceEEEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007          251 T-K-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       251 ~-~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      . . .+......|.++...|||.+|+.+...|+ .++|++-+.      +++.+++.  |..-+..+.+|||+++||+++
T Consensus       158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~s  234 (311)
T KOG0315|consen  158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQA--HNGHILRCLLSPDVKYLATCS  234 (311)
T ss_pred             cccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccccceEhhheec--ccceEEEEEECCCCcEEEeec
Confidence            3 2 23445678999999999999999999999 999998764      34455553  678999999999999999999


Q ss_pred             CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCC
Q 014007          323 DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (432)
Q Consensus       323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  402 (432)
                      .|.+++||++++.-.+                                  -.++++|+..++.++||.||++|++|+.|+
T Consensus       235 sdktv~iwn~~~~~kl----------------------------------e~~l~gh~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  235 SDKTVKIWNTDDFFKL----------------------------------ELVLTGHQRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             CCceEEEEecCCceee----------------------------------EEEeecCCceEEeeeeccCccEEEecCCCC
Confidence            9999999999886110                                  125788999999999999999999999999


Q ss_pred             eEEEEEecCCCCCcceEee
Q 014007          403 SFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       403 ~v~iw~~~~~~~~~~~~~~  421 (432)
                      .+++|++..  ++++.+-.
T Consensus       281 ~~rlW~~~~--~k~v~qy~  297 (311)
T KOG0315|consen  281 TARLWDLSA--GKEVRQYQ  297 (311)
T ss_pred             ceeeccccc--CceeeecC
Confidence            999998744  55555444

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.3e-37  Score=255.29  Aligned_cols=284  Identities=17%  Similarity=0.217  Sum_probs=250.6

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ..+.+.+|..+|+.+-|+|+-.++++++++. |++||..+++..  ..++ +|...+.+++|+..|..+++++.|     
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e--~~Lr-GHt~sv~di~~~a~Gk~l~tcSsD-----  171 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE--RSLR-GHTDSVFDISFDASGKYLATCSSD-----  171 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh--hhhh-ccccceeEEEEecCccEEEecCCc-----
Confidence            3456677999999999999999999998554 999999988874  7787 888889999999999999999998     


Q ss_pred             CeEEEEeCCC-CceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007          156 NKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       156 ~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      -.+++||..+ .++++.+. |...|.++.|-|.|.++++   |.+|+.|++.++-++.++.+|...+..++...||.  +
T Consensus       172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt--i  249 (406)
T KOG0295|consen  172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT--I  249 (406)
T ss_pred             cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee--E
Confidence            7799999877 45666655 8999999999999999885   89999999999999999999999998888888874  5


Q ss_pred             EEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCC---------------CCEEEEEcCCCceEEEEECCCCceE
Q 014007          231 LVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD---------------GQLLATSSTKGTLVRIFNTLDGTLL  294 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~---------------~~~l~~~~~dg~~i~vwd~~~~~~~  294 (432)
                      +++ ++.|.+|++|-+.++. ...+..|+.+|.|++|.|.               +.++.+++.|++ |++||+.++.++
T Consensus       250 ~As-~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL  327 (406)
T KOG0295|consen  250 IAS-CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCL  327 (406)
T ss_pred             EEe-cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEE
Confidence            554 5689999999999864 4567899999999999873               359999999999 999999999999


Q ss_pred             EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeE
Q 014007          295 QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA  374 (432)
Q Consensus       295 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (432)
                      .++.+  |...|..++|+|.|+||+++.+|+++++||+++.++.+                                   
T Consensus       328 ~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk-----------------------------------  370 (406)
T KOG0295|consen  328 FTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK-----------------------------------  370 (406)
T ss_pred             EEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee-----------------------------------
Confidence            99996  66999999999999999999999999999999998643                                   


Q ss_pred             EEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          375 QFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       375 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      .+..|+.-|+++.|..+..++++|+-|-.+++|..
T Consensus       371 ~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  371 TLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            45578888999999999999999999999999963

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.2e-37  Score=265.12  Aligned_cols=284  Identities=17%  Similarity=0.258  Sum_probs=239.6

Q ss_pred             ccCCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCC--C----eeEEEeecc-----cCcceeEEEEeeeCCeEEEe
Q 014007           79 STSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDP--F----REIFRRDFE-----RGGGIGVVEMLFRCNILALV  145 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~--~----~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~  145 (432)
                      .+.. |...|.+.+|+|-.. +|++|+ +-+.++|++..  .    ...++..+.     ...+..|++++|+.+|..|+
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            3444 999999999999776 888887 66699999863  1    111111111     12446899999999999999


Q ss_pred             cCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEE
Q 014007          146 GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCA  221 (432)
Q Consensus       146 s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  221 (432)
                      +|..|     |.+++|+ ..|..+.++. |+++|.++.|+.+|.++++   |+++.+||..++...+.+..|..+.-.+.
T Consensus       252 tG~~~-----G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVd  325 (524)
T KOG0273|consen  252 TGSED-----GEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVD  325 (524)
T ss_pred             EeecC-----cEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceE
Confidence            99999     9999999 5677788887 9999999999999999984   99999999999999999988877744566


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~  300 (432)
                      |-.+..   ++++ +.|+.|+|+.+.. .+..++.+|.+.|.++.|+|.|.+|++++.|++ ++||......+...+.. 
T Consensus       326 W~~~~~---F~ts-~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~~~~~~~~~l~~-  399 (524)
T KOG0273|consen  326 WQSNDE---FATS-STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSMGQSNSVHDLQA-  399 (524)
T ss_pred             EecCce---Eeec-CCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeecCCCcchhhhhh-
Confidence            655543   3443 4899999999987 567788999999999999999999999999999 99999999999888885 


Q ss_pred             CCcCceEEEEECCCCC---------EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007          301 ADRAEIYSLAFSSNAQ---------WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW  371 (432)
Q Consensus       301 ~~~~~i~~~~~s~~~~---------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (432)
                       |...|..+.|+|+|.         .|++++.|++|++||+..+.+                                  
T Consensus       400 -Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~----------------------------------  444 (524)
T KOG0273|consen  400 -HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP----------------------------------  444 (524)
T ss_pred             -hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce----------------------------------
Confidence             668999999999753         789999999999999999874                                  


Q ss_pred             eeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          372 SVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       372 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                       ++.+..|..+|.+|+|+|+|++||+|+.||.|.||+...
T Consensus       445 -i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  445 -IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             -eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence             556778999999999999999999999999999998744

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.4e-38  Score=285.94  Aligned_cols=270  Identities=17%  Similarity=0.247  Sum_probs=226.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      ...++|..|++|+++||.|..+. |++|.+.+.+..   .++  +...+..         +-+.+.|     -.+.+.|-
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~---~lk--~~~~l~~---------~d~~sad-----~~~~~~D~  438 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK---KLK--DASDLSN---------IDTESAD-----VDVDMLDD  438 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhc---ccc--chhhhcc---------ccccccc-----hhhhhccc
Confidence            56899999999999999998555 999998765432   232  2211111         1122222     34666666


Q ss_pred             CCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007          164 HQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (432)
Q Consensus       164 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (432)
                      ......+++. |.++|.+..|+|+.+++++   |+++++|.+.+..++-.+++|..+|..+.|+|.|-  ++++ ++.|+
T Consensus       439 ~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy--YFat-as~D~  515 (707)
T KOG0263|consen  439 DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY--YFAT-ASHDQ  515 (707)
T ss_pred             cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce--EEEe-cCCCc
Confidence            6665555555 9999999999999999994   89999999999999999999999999999998864  5565 45899


Q ss_pred             cEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE
Q 014007          240 QVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (432)
Q Consensus       240 ~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  318 (432)
                      +.++|..+. ...+.+.+|-+.|.|+.|+|+..|+++|+.|.+ ||+||+.+|..++.|.+  |.++|.+++|||+|++|
T Consensus       516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~L  592 (707)
T KOG0263|consen  516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYL  592 (707)
T ss_pred             eeeeeecccCCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceE
Confidence            999999887 667788999999999999999999999999999 99999999999999986  77999999999999999


Q ss_pred             EEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE
Q 014007          319 AVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL  398 (432)
Q Consensus       319 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  398 (432)
                      ++|+.||.|++||+.+++.+                                   ..+++|.+.|.++.||.||..||+|
T Consensus       593 aSg~ed~~I~iWDl~~~~~v-----------------------------------~~l~~Ht~ti~SlsFS~dg~vLasg  637 (707)
T KOG0263|consen  593 ASGDEDGLIKIWDLANGSLV-----------------------------------KQLKGHTGTIYSLSFSRDGNVLASG  637 (707)
T ss_pred             eecccCCcEEEEEcCCCcch-----------------------------------hhhhcccCceeEEEEecCCCEEEec
Confidence            99999999999999998743                                   3577899999999999999999999


Q ss_pred             ecCCeEEEEEecCCCC
Q 014007          399 GMDGSFYRCQFDPVNG  414 (432)
Q Consensus       399 ~~dg~v~iw~~~~~~~  414 (432)
                      +.|.+|++|++....+
T Consensus       638 g~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  638 GADNSVRLWDLTKVIE  653 (707)
T ss_pred             CCCCeEEEEEchhhcc
Confidence            9999999999865433

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=4.8e-35  Score=244.93  Aligned_cols=336  Identities=32%  Similarity=0.570  Sum_probs=276.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      ....+..+.|+.+...|..|+.+|.++|+.++..... ...  .....|+.+.|+....++++....     ..++++++
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~-~~~--~~~~~IvEmLFSSSLvaiV~~~qp-----r~Lkv~~~   75 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCF-SKD--TEGVSIVEMLFSSSLVAIVSIKQP-----RKLKVVHF   75 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCceeEEecCchHHhh-ccc--CCCeEEEEeecccceeEEEecCCC-----ceEEEEEc
Confidence            3456788889999999999999999999998776632 222  367889999999999999998654     78999999


Q ss_pred             CCCceeEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeec-cCCcceEEEecCCCcEEEEeecC-CCCcE
Q 014007          164 HQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGL-QKGQV  241 (432)
Q Consensus       164 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~-~d~~i  241 (432)
                      +.+..+.++....+|.++.++.+..+++....|+|||+++.++++++... .++...++++++..+.+++..++ ..|.|
T Consensus        76 Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   76 KKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             ccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence            99999999999999999999999999999888999999999999999766 56777899999988888887664 56999


Q ss_pred             EEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEE
Q 014007          242 RVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV  320 (432)
Q Consensus       242 ~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  320 (432)
                      .+||..+ ..+..+..|++.+.+++|+++|.+|||++..|++||||.+.+|+.+.+|+.+.....|.+++|+|++++|++
T Consensus       156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            9999988 667788999999999999999999999999999999999999999999998877778999999999999999


Q ss_pred             EeCCCeEEEEEecCCCCCCCCCCCCCCCC---CCCCCCceeEeecccceeecceeeEEEEecCCCc-eEEEEcc--CCCE
Q 014007          321 SSDKGTVHVFNLKVNSGSARSEPRSTSDP---TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP-YIVAFGH--QKNT  394 (432)
Q Consensus       321 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~--~~~~  394 (432)
                      .++.++|+||.++.....+... ......   ........++...+.......+.++..+.+.... ..+.+.+  ...+
T Consensus       236 sS~TeTVHiFKL~~~~~~~~~~-p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~  314 (391)
T KOG2110|consen  236 SSNTETVHIFKLEKVSNNPPES-PTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPR  314 (391)
T ss_pred             ecCCCeEEEEEecccccCCCCC-CCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCE
Confidence            9999999999998766322221 111111   0000111122223334456677888888887654 5566664  7789


Q ss_pred             EEEEecCCeEEEEEecCCCCCcceEeeecccCCC
Q 014007          395 VVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKP  428 (432)
Q Consensus       395 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  428 (432)
                      +.+++.||.++.|.+++++|++|..++.|.+...
T Consensus       315 v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~  348 (391)
T KOG2110|consen  315 VLVASYDGHLYSYRLPPKEGGECALIKRHFLDGS  348 (391)
T ss_pred             EEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCc
Confidence            9999999999999999999999999998887654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.1e-37  Score=258.54  Aligned_cols=290  Identities=13%  Similarity=0.157  Sum_probs=245.2

Q ss_pred             CCcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe-eEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007           76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (432)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (432)
                      ...+++..|.+.|..+.||++|++||+++ |.+.-||.+.... ....+++. +|...|..+.|+||..++++++.+   
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~---  290 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFD---  290 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCch---
Confidence            34578899999999999999999999999 5568889875433 33446665 899999999999999999999988   


Q ss_pred             CCCeEEEEeCCCCceeEEeec--CCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc-CCcceEEEecCCC
Q 014007          154 PLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVG  227 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~  227 (432)
                        ..+.+||+.+|.....+.+  ...+.+.+|.|||..+++   |+++..||+. |..+..+++.. ..+..+++.+||+
T Consensus       291 --e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk  367 (519)
T KOG0293|consen  291 --EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGK  367 (519)
T ss_pred             --HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCc
Confidence              8899999999999998884  588999999999988774   8999999985 55555554432 3577899999999


Q ss_pred             cEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      .+++++   .|..|++|+......+.+.....+|+++.+|.+|+++++.-.+.. |++||++..+.+..+.++.....+.
T Consensus       368 ~vl~v~---~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiI  443 (519)
T KOG0293|consen  368 YVLLVT---VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFII  443 (519)
T ss_pred             EEEEEe---cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEE
Confidence            988765   799999999988666655566788999999999999999999999 9999999999999998764444566


Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE
Q 014007          308 SLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV  386 (432)
Q Consensus       308 ~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  386 (432)
                      .-+|.- +..++++|++|+.|+||+..+++.                                   ++.+.+|...|++|
T Consensus       444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkl-----------------------------------l~~LsGHs~~vNcV  488 (519)
T KOG0293|consen  444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKL-----------------------------------LAVLSGHSKTVNCV  488 (519)
T ss_pred             EeccCCCCcceEEecCCCceEEEEEccCCce-----------------------------------eEeecCCcceeeEE
Confidence            666754 558999999999999999999884                                   56788999999999


Q ss_pred             EEcc-CCCEEEEEecCCeEEEEEecC
Q 014007          387 AFGH-QKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       387 ~~s~-~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +|+| +..++|+++.||+|+||....
T Consensus       489 swNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  489 SWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ecCCCCHHHhhccCCCCeEEEecCCc
Confidence            9999 667899999999999998754

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.8e-37  Score=262.06  Aligned_cols=277  Identities=12%  Similarity=0.185  Sum_probs=235.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      .-.|..+.|.|+|+.|++|++.| +.+|+.....  +...++ .|...|.++.|+.++..+++|+.+     |.|++|+.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--FEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~g-----G~iKyWqp  167 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--FETILQ-AHDSPVRTMKWSHNGTWMISGDKG-----GMIKYWQP  167 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceee--HHHHhh-hhcccceeEEEccCCCEEEEcCCC-----ceEEeccc
Confidence            45789999999999999999777 9999974433  223343 799999999999999999999999     99999996


Q ss_pred             CCCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC
Q 014007          164 HQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (432)
Q Consensus       164 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (432)
                      .-. .++.+.  |...|++++|+|+...+++   ||+|+|||....+.-..+.+|.-.+.++.|+|...  +++ +|+.|
T Consensus       168 nmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg--Lia-sgskD  243 (464)
T KOG0284|consen  168 NMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG--LIA-SGSKD  243 (464)
T ss_pred             chh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc--eeE-EccCC
Confidence            544 444444  5699999999996655552   89999999998888888899999999999999865  344 35689


Q ss_pred             CcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC-CC
Q 014007          239 GQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-AQ  316 (432)
Q Consensus       239 ~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~  316 (432)
                      ..|++||.++ .++.++.+|...|..+.|+|++++|++++.|.. ++++|+++.+.++.+++  |+..++++.|+|- ..
T Consensus       244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~~  320 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNES  320 (464)
T ss_pred             ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhc--chhhheeecccccccc
Confidence            9999999998 567788999999999999999999999999999 99999999999999986  7789999999994 45


Q ss_pred             EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEE
Q 014007          317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV  396 (432)
Q Consensus       317 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  396 (432)
                      +|.+|+.||.|..|.+...+.+..+                                  -..|++.|++++|+|-|..|+
T Consensus       321 lftsgg~Dgsvvh~~v~~~~p~~~i----------------------------------~~AHd~~iwsl~~hPlGhil~  366 (464)
T KOG0284|consen  321 LFTSGGSDGSVVHWVVGLEEPLGEI----------------------------------PPAHDGEIWSLAYHPLGHILA  366 (464)
T ss_pred             ceeeccCCCceEEEeccccccccCC----------------------------------CcccccceeeeeccccceeEe
Confidence            7888999999999999865544332                                  235888999999999999999


Q ss_pred             EEecCCeEEEEEec
Q 014007          397 ILGMDGSFYRCQFD  410 (432)
Q Consensus       397 ~~~~dg~v~iw~~~  410 (432)
                      +|+.|.++++|.-.
T Consensus       367 tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  367 TGSNDRTVRFWTRN  380 (464)
T ss_pred             ecCCCcceeeeccC
Confidence            99999999999753

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.5e-35  Score=253.58  Aligned_cols=274  Identities=18%  Similarity=0.271  Sum_probs=240.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      ...|++++|+.+|.+||+|..+| ++||+.+... .  ..+. .|..+|.++.|+..+.++++++-|     +++.+||.
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~--~tl~-~HkgPI~slKWnk~G~yilS~~vD-----~ttilwd~  305 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-I--STLG-QHKGPIFSLKWNKKGTYILSGGVD-----GTTILWDA  305 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCchh-h--hhhh-ccCCceEEEEEcCCCCEEEeccCC-----ccEEEEec
Confidence            46899999999999999999666 9999976443 2  3443 699999999999999999999999     99999999


Q ss_pred             CCCceeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCc
Q 014007          164 HQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (432)
Q Consensus       164 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (432)
                      .+++..+.+. |..+-..+.|-.+..++.  .|+.|+++.+....++.++.+|.+.|.++.|.|.+..  +++ .+.|++
T Consensus       306 ~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~L--LaS-~SdD~T  382 (524)
T KOG0273|consen  306 HTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSL--LAS-CSDDGT  382 (524)
T ss_pred             cCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCce--EEE-ecCCCe
Confidence            9999999999 666668899999888888  4999999999999999999999999999999999863  343 358999


Q ss_pred             EEEEEccC-CceeeeeccCCceeEEEEcCCC---------CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007          241 VRVEHYAS-KRTKFIMAHDSRIACFALTQDG---------QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (432)
Q Consensus       241 i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~---------~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~  310 (432)
                      ++||.... .....+.+|...|..+.|+|.|         ..|++++.|++ |++||+..+.++.+|..  |..+|++++
T Consensus       383 lkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVysva  459 (524)
T KOG0273|consen  383 LKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYSVA  459 (524)
T ss_pred             eEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEEEE
Confidence            99999665 6677899999999999999964         47899999999 99999999999999975  679999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (432)
Q Consensus       311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  390 (432)
                      |+|+|+++|+|+.||.|.+|++++++..+                                    -....+.|..++|+.
T Consensus       460 fS~~g~ylAsGs~dg~V~iws~~~~~l~~------------------------------------s~~~~~~Ifel~Wn~  503 (524)
T KOG0273|consen  460 FSPNGRYLASGSLDGCVHIWSTKTGKLVK------------------------------------SYQGTGGIFELCWNA  503 (524)
T ss_pred             ecCCCcEEEecCCCCeeEeccccchheeE------------------------------------eecCCCeEEEEEEcC
Confidence            99999999999999999999999998322                                    222345689999999


Q ss_pred             CCCEEEEEecCCeEEEEEe
Q 014007          391 QKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       391 ~~~~l~~~~~dg~v~iw~~  409 (432)
                      +|+.|..+-.||.+.+.++
T Consensus       504 ~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  504 AGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             CCCEEEEEecCCCceEEEe
Confidence            9999999999999999765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.6e-36  Score=236.67  Aligned_cols=251  Identities=22%  Similarity=0.289  Sum_probs=215.7

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ...........|+.+...||++.||+++...||+||+.+........+. +|...|..+.|..++..+++|++|     |
T Consensus        32 C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgseD-----g  105 (311)
T KOG0315|consen   32 CSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGRWMYTGSED-----G  105 (311)
T ss_pred             EEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEe-ccCCceEEEEEeecCeEEEecCCC-----c
Confidence            3344555677899999999999999999999999999988876667886 899999999999999999999999     9


Q ss_pred             eEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEE-eeccCCcceEEEecCCCcEEEE
Q 014007          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      +++|||++...+-+.+++..+|+++..+|+..-+++   +|.|++||+.+..+.+.+ ......+..+.+.|+|..++- 
T Consensus       106 t~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a-  184 (311)
T KOG0315|consen  106 TVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAA-  184 (311)
T ss_pred             eEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEE-
Confidence            999999999888888999999999999998766664   789999999987665554 334457888999999986643 


Q ss_pred             eecCCCCcEEEEEccC-------CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcC
Q 014007          233 CPGLQKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRA  304 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~-------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~  304 (432)
                        ....|.+++|++-.       .++..++.|++.+..+.+|||+++||+++.|.+ ++||+..+. +....+.+  |..
T Consensus       185 --~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~g--h~r  259 (311)
T KOG0315|consen  185 --ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLTG--HQR  259 (311)
T ss_pred             --ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEeec--CCc
Confidence              34789999999876       234567899999999999999999999999999 999999887 44445553  668


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      .++.++||.||+||++|+.|+.+++||+..++.+.
T Consensus       260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             eEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence            99999999999999999999999999999998543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-34  Score=261.53  Aligned_cols=324  Identities=19%  Similarity=0.255  Sum_probs=263.9

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      -....+|-+.|.++.|+.|.++|++|+ |-.++||.++..+......+. +|...|+.+-|..+...+.+-+.|     |
T Consensus       138 ~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~-gHkd~VvacfF~~~~~~l~tvskd-----G  211 (893)
T KOG0291|consen  138 HRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALN-GHKDYVVACFFGANSLDLYTVSKD-----G  211 (893)
T ss_pred             eeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEecc-CCCcceEEEEeccCcceEEEEecC-----c
Confidence            356778999999999999999999998 555999999887776556675 899999999999999999999999     9


Q ss_pred             eEEEEeCCC-----------------------Cce-----eE----E--ee-cCCceEEEEEecCccEEEe---CCeEEE
Q 014007          157 KVMIWDDHQ-----------------------SRC-----IG----E--LS-FRSEVRSVKLRRDRIIVVL---EQKIFV  198 (432)
Q Consensus       157 ~v~iwd~~~-----------------------~~~-----~~----~--~~-~~~~v~~~~~~~~~~~~~~---d~~i~i  198 (432)
                      .+.+|....                       ++.     ..    .  +. ....+++.+|++...+++.   .|...+
T Consensus       212 ~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~L  291 (893)
T KOG0291|consen  212 ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGL  291 (893)
T ss_pred             eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEE
Confidence            999997651                       111     00    0  11 2367999999998888873   789999


Q ss_pred             EEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEc
Q 014007          199 YNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSS  277 (432)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (432)
                      |++....+++.+.....++..++|+..|+.+++.+  +.-|.+.||++.+.. +...++|...+++++++|||+++|+|+
T Consensus       292 yelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~--~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~  369 (893)
T KOG0291|consen  292 YELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC--SKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA  369 (893)
T ss_pred             EecCCceEEEEeecccceeeEEEecccCCEEEEcC--CccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc
Confidence            99999999999998889999999999999887765  457999999999854 456779999999999999999999999


Q ss_pred             CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCC-CCC-CCCCCC
Q 014007          278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRST-SDP-TLPTSS  355 (432)
Q Consensus       278 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~-~~~~~~  355 (432)
                      .||. |+|||..++-|..+|..  |...|+.+.|+..|+.|++.+.||+|+.||+...++.+++..... +++ ...+.+
T Consensus       370 eDgK-VKvWn~~SgfC~vTFte--Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s  446 (893)
T KOG0291|consen  370 EDGK-VKVWNTQSGFCFVTFTE--HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS  446 (893)
T ss_pred             CCCc-EEEEeccCceEEEEecc--CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence            9999 99999999999999996  679999999999999999999999999999999998877763322 222 122211


Q ss_pred             ce-eEeecccceeeccee------eEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          356 LS-FIKGVLPKYFSSEWS------VAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       356 ~~-~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      .. ...+....+.--.|.      +-.+.+|+++|.+++|+|+++.|++++.|.+|++|++=.+
T Consensus       447 GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  447 GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence            11 112222222222333      4468899999999999999999999999999999998554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.1e-35  Score=245.67  Aligned_cols=304  Identities=17%  Similarity=0.236  Sum_probs=258.2

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ...++.+|.+.|.|+++.|-+.+|++|+ |++|+|||+.+++..  .++. +|...|..+++++...++++++.|     
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--ltlt-Ghi~~vr~vavS~rHpYlFs~ged-----  214 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--LTLT-GHIETVRGVAVSKRHPYLFSAGED-----  214 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--Eeec-chhheeeeeeecccCceEEEecCC-----
Confidence            3578999999999999999999999998 677999999998876  5676 899999999999999999999999     


Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      +.|+.||++..+.++.+. |-+.|.+++.+|.-..+++   |.++++||+++...+..+.+|.++|..+.+.|-...++ 
T Consensus       215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi-  293 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI-  293 (460)
T ss_pred             CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE-
Confidence            999999999999999988 9999999999998888874   88999999999999999999999999999988766654 


Q ss_pred             EeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~  310 (432)
                        +|+.|++|++||++.++ ...+..|...|.+++.+|....+|+++.|.  |+-|++..|..+..+.+  |...|.+++
T Consensus       294 --t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~  367 (460)
T KOG0285|consen  294 --TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLS  367 (460)
T ss_pred             --EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeee
Confidence              45699999999999854 567889999999999999999999999986  89999999999988775  668999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (432)
Q Consensus       311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  390 (432)
                      ...|| ++++|+++|.+.+||.+++-..+.....                 ..|..         + ..+..|.+.+|..
T Consensus       368 ~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~-----------------vqpGS---------l-~sEagI~as~fDk  419 (460)
T KOG0285|consen  368 VNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI-----------------VQPGS---------L-ESEAGIFASCFDK  419 (460)
T ss_pred             eccCc-eEEEcCCceEEEEEecCcCccccccccc-----------------ccCCc---------c-ccccceeEEeecc
Confidence            98876 6779999999999999998643321100                 01100         0 1234588999999


Q ss_pred             CCCEEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007          391 QKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYN  423 (432)
Q Consensus       391 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  423 (432)
                      .|..|++|..|.+|.+|.=|...-+|-..+.|.
T Consensus       420 tg~rlit~eadKtIk~~keDe~aT~EthPl~w~  452 (460)
T KOG0285|consen  420 TGSRLITGEADKTIKMYKEDEHATEETHPLNWK  452 (460)
T ss_pred             cCceEEeccCCcceEEEecccccCcccCCcCCC
Confidence            999999999999999999877655555555443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.7e-35  Score=263.88  Aligned_cols=303  Identities=15%  Similarity=0.251  Sum_probs=240.0

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCC--cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGTDH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      +.-...+|..++|+..|.+||.|+.+  .+.||+......++  ..+ +|...+.+++++|||..+++|+.|     |+|
T Consensus       303 LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl--KQQ-gH~~~i~~l~YSpDgq~iaTG~eD-----gKV  374 (893)
T KOG0291|consen  303 LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL--KQQ-GHSDRITSLAYSPDGQLIATGAED-----GKV  374 (893)
T ss_pred             eecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee--ecc-ccccceeeEEECCCCcEEEeccCC-----CcE
Confidence            33445789999999999999999965  49999988766554  333 799999999999999999999999     999


Q ss_pred             EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCc--ceEEEecCCCcEEEE
Q 014007          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPK--GLCAVSQGVGSLVLV  232 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  232 (432)
                      +|||..++-|..++. |...|+.+.|+..++.+++   ||+|+.||+...+..+++.. ..++  .+++..|.|.  ++.
T Consensus       375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGe--lV~  451 (893)
T KOG0291|consen  375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGE--LVC  451 (893)
T ss_pred             EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCC--EEE
Confidence            999999999999999 9999999999999998883   99999999999998888864 3344  4566666665  333


Q ss_pred             eecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEE
Q 014007          233 CPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLA  310 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~  310 (432)
                      +++-..-.|.+|++.++.+ ..+.+|+++|.+++|+|+|..|++++.|.+ ||+||+-.. ..+.++.   +...+..++
T Consensus       452 AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vs  527 (893)
T KOG0291|consen  452 AGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVS  527 (893)
T ss_pred             eeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEE
Confidence            3333446799999999665 467899999999999999999999999999 999998654 3455666   557899999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (432)
Q Consensus       311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  390 (432)
                      |+|||+.||+++.||.|.+||+..+.+...+++...               ..+.......-.+.-.......+.+++|+
T Consensus       528 frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD---------------~~~gR~~~D~~ta~~sa~~K~Ftti~ySa  592 (893)
T KOG0291|consen  528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKD---------------LSGGRKETDRITAENSAKGKTFTTICYSA  592 (893)
T ss_pred             EcCCCCeEEEEEecceEEEEEhhhceeeccccchhh---------------ccccccccceeehhhcccCCceEEEEEcC
Confidence            999999999999999999999998876544431100               00000000100111122235688999999


Q ss_pred             CCCEEEEEecCCeEEEEEecCCC
Q 014007          391 QKNTVVILGMDGSFYRCQFDPVN  413 (432)
Q Consensus       391 ~~~~l~~~~~dg~v~iw~~~~~~  413 (432)
                      ||+.|++||....|.||+++.+.
T Consensus       593 DG~~IlAgG~sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  593 DGKCILAGGESNSICIYDVPEGV  615 (893)
T ss_pred             CCCEEEecCCcccEEEEECchhh
Confidence            99999999999999999997653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.7e-34  Score=251.64  Aligned_cols=290  Identities=16%  Similarity=0.215  Sum_probs=237.3

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      .....|..-|+|++|+|||.++|+++ |+.|.|||-.+++.+....-..+|...|.++.|+||+..+++.+.|     .+
T Consensus       184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD-----kt  258 (603)
T KOG0318|consen  184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD-----KT  258 (603)
T ss_pred             ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC-----ce
Confidence            56777999999999999999999877 6669999998888775444335799999999999999999999999     99


Q ss_pred             EEEEeCCCCceeEEeecCCc----eEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          158 VMIWDDHQSRCIGELSFRSE----VRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      ++|||+.+.++++++.....    -..+-|..+..+.+ ++|+|.+++......++.+.+|...|+++.+++++.+++  
T Consensus       259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~--  336 (603)
T KOG0318|consen  259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY--  336 (603)
T ss_pred             EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE--
Confidence            99999999999999884333    33445654444433 499999999999999999999999999999999997654  


Q ss_pred             eecCCCCcEEEEEccCCce--------------------------------eee--------------------------
Q 014007          233 CPGLQKGQVRVEHYASKRT--------------------------------KFI--------------------------  254 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~--------------------------------~~~--------------------------  254 (432)
                       +|+.||.|.-|+...+..                                +.+                          
T Consensus       337 -SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~  415 (603)
T KOG0318|consen  337 -SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS  415 (603)
T ss_pred             -eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence             456999999999765210                                000                          


Q ss_pred             ----------------ecc--------CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007          255 ----------------MAH--------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (432)
Q Consensus       255 ----------------~~~--------~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~  310 (432)
                                      ..+        .-...+++++|++..++.|+.|+. |+||.+....+..+.....|.++|+.++
T Consensus       416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~iT~va  494 (603)
T KOG0318|consen  416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAAITDVA  494 (603)
T ss_pred             CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce-EEEEEecCCcccceeeeecccCCceEEE
Confidence                            000        013467889999999999999999 9999998766544433334889999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (432)
Q Consensus       311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  390 (432)
                      ||||+.|||++...+.+.+||+.+.+..                                  ......|...|++++|+|
T Consensus       495 ySpd~~yla~~Da~rkvv~yd~~s~~~~----------------------------------~~~w~FHtakI~~~aWsP  540 (603)
T KOG0318|consen  495 YSPDGAYLAAGDASRKVVLYDVASREVK----------------------------------TNRWAFHTAKINCVAWSP  540 (603)
T ss_pred             ECCCCcEEEEeccCCcEEEEEcccCcee----------------------------------cceeeeeeeeEEEEEeCC
Confidence            9999999999999999999999987631                                  223556888999999999


Q ss_pred             CCCEEEEEecCCeEEEEEecC
Q 014007          391 QKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       391 ~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +..+||+|+-|-.|.||+++.
T Consensus       541 ~n~~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  541 NNKLVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             CceEEEeccccceEEEEEccC
Confidence            999999999999999999865

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.5e-34  Score=230.90  Aligned_cols=288  Identities=14%  Similarity=0.227  Sum_probs=236.4

Q ss_pred             CcccCCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcC-CCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~-~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (432)
                      ..+.+.+|.+.|..++|+|- |.+||+++ |+.|+||+.. .........+.++|...|.+++|+|.+++|++++.|   
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD---   82 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD---   82 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc---
Confidence            34667889999999999998 88999988 6669999987 334445566767899999999999999999999999   


Q ss_pred             CCCeEEEEeCCCC--ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC---CeeeEEEeeccCCcceEEEec
Q 014007          154 PLNKVMIWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD---LKLLHQIETIANPKGLCAVSQ  224 (432)
Q Consensus       154 ~~~~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~  224 (432)
                        .++.||.-..+  +++..++ |...|.+++|+++|.+|++   |..|-||.+..   .++...++.|...|..+.|+|
T Consensus        83 --~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP  160 (312)
T KOG0645|consen   83 --ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP  160 (312)
T ss_pred             --ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence              99999986554  6788888 9999999999999999995   89999999874   357788899999999999999


Q ss_pred             CCCcEEEEeecCCCCcEEEEEccC----CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC
Q 014007          225 GVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~  300 (432)
                      ...  +|++ ++.|.+|++|+-..    ..++++.+|...|.+++|++.|..|++++.|++ |+||-..+     .+. +
T Consensus       161 t~d--lL~S-~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~-----~~~-~  230 (312)
T KOG0645|consen  161 TED--LLFS-CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYT-----DLS-G  230 (312)
T ss_pred             Ccc--eeEE-eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeecc-----Ccc-h
Confidence            765  3343 45999999998763    457889999999999999999999999999999 99998652     222 2


Q ss_pred             CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC
Q 014007          301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE  380 (432)
Q Consensus       301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (432)
                      .|...++.+.|.  ...|++++.|+.|++|.-...-..+               .+..+             ...-..|+
T Consensus       231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p---------------~~~l~-------------~~~~~aHe  280 (312)
T KOG0645|consen  231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEP---------------SWNLL-------------AKKEGAHE  280 (312)
T ss_pred             hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCc---------------hHHHH-------------Hhhhcccc
Confidence            266789999998  4579999999999999877432111               01100             11244688


Q ss_pred             CCceEEEEccC-CCEEEEEecCCeEEEEEe
Q 014007          381 GSPYIVAFGHQ-KNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       381 ~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~  409 (432)
                      ..|++++|.|. .++|++|+.||.|++|.+
T Consensus       281 ~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  281 VDVNSVQWNPKVSNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             cccceEEEcCCCCCceeecCCCceEEEEEe
Confidence            88999999994 789999999999999987

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.6e-34  Score=253.08  Aligned_cols=280  Identities=21%  Similarity=0.316  Sum_probs=238.6

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      ...+|.+.|++++|+|++++|++++ ++.|++|++.+.+..  ..+. .|...+..+.|.+++..+++++.+     +.|
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~i   75 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLK-GHTGPVRDVAASADGTYLASGSSD-----KTI   75 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--EEEe-cCCcceeEEEECCCCCEEEEEcCC-----CeE
Confidence            3458999999999999999999998 555999999876643  3333 577788899999999888888888     999


Q ss_pred             EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      ++||+.+++.+..+. |...+.++.|++++.+++.   ++.|++||+++++....+..+...+..+.+++++..  +++ 
T Consensus        76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~-  152 (289)
T cd00200          76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF--VAS-  152 (289)
T ss_pred             EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCE--EEE-
Confidence            999999888888877 7889999999999877773   889999999988888888888888999999998553  332 


Q ss_pred             cCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007          235 GLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       235 g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~  313 (432)
                      +..++.|++||++. .....+..|...+.++.|+|+++.|++++.++. |++||+++++.+..+..  |...+.++.|++
T Consensus       153 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~  229 (289)
T cd00200         153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSP  229 (289)
T ss_pred             EcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcC
Confidence            33699999999986 445667788889999999999999999999999 99999999988888853  557999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC
Q 014007          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN  393 (432)
Q Consensus       314 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  393 (432)
                      ++.++++++.||.|++||+.+++.                                   ...+..|...|.+++|+++++
T Consensus       230 ~~~~~~~~~~~~~i~i~~~~~~~~-----------------------------------~~~~~~~~~~i~~~~~~~~~~  274 (289)
T cd00200         230 DGYLLASGSEDGTIRVWDLRTGEC-----------------------------------VQTLSGHTNSVTSLAWSPDGK  274 (289)
T ss_pred             CCcEEEEEcCCCcEEEEEcCCcee-----------------------------------EEEccccCCcEEEEEECCCCC
Confidence            999998888899999999987652                                   334557778899999999999


Q ss_pred             EEEEEecCCeEEEEE
Q 014007          394 TVVILGMDGSFYRCQ  408 (432)
Q Consensus       394 ~l~~~~~dg~v~iw~  408 (432)
                      .|++++.||.+++|+
T Consensus       275 ~l~~~~~d~~i~iw~  289 (289)
T cd00200         275 RLASGSADGTIRIWD  289 (289)
T ss_pred             EEEEecCCCeEEecC
Confidence            999999999999985

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=270.87  Aligned_cols=284  Identities=18%  Similarity=0.273  Sum_probs=243.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      ..+...|.++.|+++|++|++++ ++.+++|+....+......+. +|...|.+++|++++.++++++.|     ++|+|
T Consensus       156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D-----~tiri  229 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDD-----KTLRI  229 (456)
T ss_pred             ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCC-----ceEEE
Confidence            44488999999999999999887 666999998655522234453 799999999999999999999999     99999


Q ss_pred             EeC-CCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007          161 WDD-HQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       161 wd~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      ||+ ..+..++++. |...|++++|+|++.++++   |++|+|||+++++++..+..|...+..++|++++..++.   +
T Consensus       230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s---~  306 (456)
T KOG0266|consen  230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS---A  306 (456)
T ss_pred             eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE---c
Confidence            999 5558889998 9999999999999988774   999999999999999999999999999999999986543   3


Q ss_pred             CCCCcEEEEEccCCc---eeeeeccCCc--eeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-CceEEE
Q 014007          236 LQKGQVRVEHYASKR---TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSL  309 (432)
Q Consensus       236 ~~d~~i~i~d~~~~~---~~~~~~~~~~--i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~~  309 (432)
                      +.|+.|++||+.++.   ...+..+...  ++++.|+|++.+|++++.|+. +++||+..++++..+..+... ..+.+.
T Consensus       307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~  385 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSP  385 (456)
T ss_pred             CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecc
Confidence            579999999999977   3456666555  999999999999999999999 999999999999999875322 245566


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEec-CCCceEEEE
Q 014007          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIVAF  388 (432)
Q Consensus       310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~  388 (432)
                      ..++.++++++|+.|+.|++||+.++..                                   +..+.+| ...+..+++
T Consensus       386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~~-----------------------------------~~~l~~h~~~~~~~~~~  430 (456)
T KOG0266|consen  386 TLSTGGKLIYSGSEDGSVYVWDSSSGGI-----------------------------------LQRLEGHSKAAVSDLSS  430 (456)
T ss_pred             cccCCCCeEEEEeCCceEEEEeCCccch-----------------------------------hhhhcCCCCCceecccc
Confidence            6788999999999999999999998663                                   2345667 778899999


Q ss_pred             ccCCCEEEEEe--cCCeEEEEEec
Q 014007          389 GHQKNTVVILG--MDGSFYRCQFD  410 (432)
Q Consensus       389 s~~~~~l~~~~--~dg~v~iw~~~  410 (432)
                      +|..+++++++  .|+.+++|..+
T Consensus       431 ~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  431 HPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCCcCeeeecCcCCCceEEEecCC
Confidence            99999999998  68999999864

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-34  Score=229.99  Aligned_cols=244  Identities=13%  Similarity=0.154  Sum_probs=212.5

Q ss_pred             EEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCC-----CceeEEee-cCCceEEEEEecCccEEEe
Q 014007          120 FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ-----SRCIGELS-FRSEVRSVKLRRDRIIVVL  192 (432)
Q Consensus       120 ~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~~  192 (432)
                      ....++ +|...|..++..+. ...++++++|     .++.+|++..     |..++.+. |...|..+..++||.++++
T Consensus         7 l~~tl~-gh~d~Vt~la~~~~~~~~l~sasrD-----k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS   80 (315)
T KOG0279|consen    7 LRGTLE-GHTDWVTALAIKIKNSDILVSASRD-----KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS   80 (315)
T ss_pred             eeeeec-CCCceEEEEEeecCCCceEEEcccc-----eEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence            335565 89999999997765 6788999999     9999998754     56788888 9999999999999999884


Q ss_pred             ---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeecc--CCceeEEEEc
Q 014007          193 ---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH--DSRIACFALT  267 (432)
Q Consensus       193 ---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~i~~~~~s  267 (432)
                         |+++++||+.+++..+.+.+|...+.+++|++|.+.++   +|+.|.+|++|+..+....++..+  .+.|.|+.|+
T Consensus        81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qiv---SGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs  157 (315)
T KOG0279|consen   81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIV---SGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS  157 (315)
T ss_pred             ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceee---cCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence               99999999999999999999999999999999988653   577999999999999877776654  7899999999


Q ss_pred             CC--CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCC
Q 014007          268 QD--GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS  345 (432)
Q Consensus       268 p~--~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  345 (432)
                      |+  ..+|++++.|++ |++||+++.+....+.+  |.+.++.+++||||...++|+.||.+.+||++.++.+.      
T Consensus       158 P~~~~p~Ivs~s~Dkt-vKvWnl~~~~l~~~~~g--h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly------  228 (315)
T KOG0279|consen  158 PNESNPIIVSASWDKT-VKVWNLRNCQLRTTFIG--HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY------  228 (315)
T ss_pred             CCCCCcEEEEccCCce-EEEEccCCcchhhcccc--ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE------
Confidence            97  689999999999 99999999999988886  66899999999999999999999999999999988432      


Q ss_pred             CCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                                                    ...|...|.+++|+|+.-+|+.+... .|+||+++.+
T Consensus       229 ------------------------------sl~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~  264 (315)
T KOG0279|consen  229 ------------------------------SLEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESK  264 (315)
T ss_pred             ------------------------------eccCCCeEeeEEecCCceeEeeccCC-ceEEEeccch
Confidence                                          23466789999999998788766655 5999999774

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-34  Score=228.47  Aligned_cols=297  Identities=14%  Similarity=0.167  Sum_probs=242.3

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      .+.+|..+++.|.|+.+|.+|.+++ |....+|-..+++.+  .++. +|...|+++..+.+...+++|+.|     .++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--Gty~-GHtGavW~~Did~~s~~liTGSAD-----~t~   76 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--GTYD-GHTGAVWCCDIDWDSKHLITGSAD-----QTA   76 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--eeec-CCCceEEEEEecCCcceeeecccc-----cee
Confidence            4678999999999999999999888 666999987666655  6665 899999999999999999999999     999


Q ss_pred             EEEeCCCCceeEEeecCCceEEEEEecCccEEEe--------CCeEEEEEcCC-------CeeeEEEeeccCCcceEEEe
Q 014007          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--------EQKIFVYNFAD-------LKLLHQIETIANPKGLCAVS  223 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~  223 (432)
                      ++||+++|+++..++.+.+|..+.|+.+|.+++.        .+.|.++|++.       .++...+..+...++..-|.
T Consensus        77 kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   77 KLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             EEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence            9999999999999999999999999999988772        35799999983       45577777778888899999


Q ss_pred             cCCCcEEEEeecCCCCcEEEEEccCCc--eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC
Q 014007          224 QGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (432)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~  301 (432)
                      |-++.+  + +|.+||.|.+||.+++.  +.....|...|+.+++++|..++++++.|.+ -++||+.+.++++++.   
T Consensus       157 ~l~~~i--i-~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~---  229 (327)
T KOG0643|consen  157 PLGETI--I-AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYT---  229 (327)
T ss_pred             ccCCEE--E-EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEee---
Confidence            998854  3 35699999999999853  3345689999999999999999999999999 9999999999999998   


Q ss_pred             CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG  381 (432)
Q Consensus       302 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (432)
                      ...+|++.+++|....++.|+.-...   |+.+-...                ...|-..+....+  ..++..+++|-+
T Consensus       230 te~PvN~aaisP~~d~VilgGGqeA~---dVTTT~~r----------------~GKFEArFyh~i~--eEEigrvkGHFG  288 (327)
T KOG0643|consen  230 TERPVNTAAISPLLDHVILGGGQEAM---DVTTTSTR----------------AGKFEARFYHLIF--EEEIGRVKGHFG  288 (327)
T ss_pred             ecccccceecccccceEEecCCceee---eeeeeccc----------------ccchhhhHHHHHH--HHHhcccccccc
Confidence            45799999999987777776532222   33322100                0011111111111  123678999999


Q ss_pred             CceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      +|++|+|+|+|+..++|++||.|++..++..
T Consensus       289 PINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  289 PINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             CcceeEECCCCcccccCCCCceEEEEEeccc
Confidence            9999999999999999999999999988653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.9e-36  Score=257.88  Aligned_cols=284  Identities=15%  Similarity=0.181  Sum_probs=241.5

Q ss_pred             ccCCCCCCCeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ....+|...|+++.|.| .+.+|++++ |+.|+||++-... ...+++. +|...|.++.|+.++..+++++.|     +
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD-----~  280 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-RCLRTFK-GHRKPVRDASFNNCGTSFLSASFD-----R  280 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-ceehhhh-cchhhhhhhhccccCCeeeeeecc-----e
Confidence            57889999999999999 788888888 6669999996632 2337776 899999999999999999999999     9


Q ss_pred             eEEEEeCCCCceeEEeecCCceEEEEEecCc-cEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      .|++||+++|+++..+.....++++.|+|++ ..++   +|+.|+.||+++++.++++..|-+.+..+.|-+++..++..
T Consensus       281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            9999999999999999999999999999987 3333   49999999999999999999999999999999999877543


Q ss_pred             eecCCCCcEEEEEccCCceeee--eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC---ceEEEEEeCCCcCceE
Q 014007          233 CPGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG---TLLQEVRRGADRAEIY  307 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~---~~~~~~~~~~~~~~i~  307 (432)
                         +.|+.++||+.+......+  ..+.-...++..+|++++++.-+.|+. |.+|.+...   ...+.|.++.-.+.-.
T Consensus       361 ---SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaGys~  436 (503)
T KOG0282|consen  361 ---SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAGYSC  436 (503)
T ss_pred             ---ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccCcee
Confidence               4899999999998554332  233445678999999999999999999 999986542   2334566655556778


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  387 (432)
                      .+.|||||++|++|+.||.+.+||.++-+.                                   +..++.|++.+..+.
T Consensus       437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl-----------------------------------~~~lkah~~~ci~v~  481 (503)
T KOG0282|consen  437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKL-----------------------------------VSKLKAHDQPCIGVD  481 (503)
T ss_pred             eEEEcCCCCeEEeecCCccEEEeechhhhh-----------------------------------hhccccCCcceEEEE
Confidence            899999999999999999999999998774                                   345788999999999


Q ss_pred             Ecc-CCCEEEEEecCCeEEEEE
Q 014007          388 FGH-QKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       388 ~s~-~~~~l~~~~~dg~v~iw~  408 (432)
                      |+| ....||+++.||.|++|+
T Consensus       482 wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  482 WHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ecCCCcceeEecccCceeEecC
Confidence            999 456899999999999995

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-33  Score=222.32  Aligned_cols=280  Identities=15%  Similarity=0.237  Sum_probs=234.0

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEE-EcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAA-GTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ....+..|.++|..+.|+-||+|.++ |+|++|++|+...+.++  +++. +|...|.+.+.+.+...+++++.|     
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--ktYs-ghG~EVlD~~~s~Dnskf~s~GgD-----   80 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--KTYS-GHGHEVLDAALSSDNSKFASCGGD-----   80 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--eeec-CCCceeeeccccccccccccCCCC-----
Confidence            34567889999999999999998655 45888999997766555  7776 899999999999999999999999     


Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC--CeeeEEEeeccCCcceEEEecCCCcE
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD--LKLLHQIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (432)
                      ..|.+||+.+|+.++.+. |...|+.++|+.+...+++   |..+++||.+.  .++++.+....+.+..+.++..   .
T Consensus        81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---e  157 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---E  157 (307)
T ss_pred             ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---E
Confidence            999999999999999999 9999999999999998884   89999999986  4678888877788877777654   2


Q ss_pred             EEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~  309 (432)
                      + + +|+.||+++.||++.+.+..- -...+|+|+.|+++++.+++++.|++ |++.|-.+|+++..++++.....-..+
T Consensus       158 I-v-aGS~DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc  233 (307)
T KOG0316|consen  158 I-V-AGSVDGTVRTYDIRKGTLSSD-YFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDC  233 (307)
T ss_pred             E-E-eeccCCcEEEEEeecceeehh-hcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeee
Confidence            3 3 477999999999998765431 23568999999999999999999999 999999999999999987655566777


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCC-ceEEEE
Q 014007          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS-PYIVAF  388 (432)
Q Consensus       310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~  388 (432)
                      +++.....+++|++||.|++||+.....+                                   ..+..+... |..+.+
T Consensus       234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~-----------------------------------sk~~~~~~v~v~dl~~  278 (307)
T KOG0316|consen  234 CLNQSDTHVFSGSEDGKVYFWDLVDETQI-----------------------------------SKLSVVSTVIVTDLSC  278 (307)
T ss_pred             eecccceeEEeccCCceEEEEEeccceee-----------------------------------eeeccCCceeEEeeec
Confidence            88888889999999999999999987742                                   234455554 788999


Q ss_pred             ccCCCEEEEEecCCeEEE
Q 014007          389 GHQKNTVVILGMDGSFYR  406 (432)
Q Consensus       389 s~~~~~l~~~~~dg~v~i  406 (432)
                      +|.-..++++...+.+..
T Consensus       279 hp~~~~f~~A~~~~~~~~  296 (307)
T KOG0316|consen  279 HPTMDDFITATGHGDLFW  296 (307)
T ss_pred             ccCccceeEecCCceece
Confidence            998887887775554433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=9.4e-34  Score=226.36  Aligned_cols=274  Identities=18%  Similarity=0.260  Sum_probs=227.8

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN  156 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~  156 (432)
                      ....+|...|.+++|+.+|..|++|+ ++.+++|+++..+........ +|...|..++|++. ...+++++.|     .
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~-gh~~svdql~w~~~~~d~~atas~d-----k   87 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYR-GHTDSVDQLCWDPKHPDLFATASGD-----K   87 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhccc-CCCcchhhheeCCCCCcceEEecCC-----c
Confidence            44667899999999999999999999 666999999877555444444 78888888888653 3455666666     8


Q ss_pred             eEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      +|++||+..+++...+.....-.-+.|+|+|.+++.   |..|.+.|.++.+.....+. ...+..++|+ ..+.+++++
T Consensus        88 ~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~-~~nd~Fflt  165 (313)
T KOG1407|consen   88 TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWN-NSNDLFFLT  165 (313)
T ss_pred             eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeec-CCCCEEEEe
Confidence            999999999999999996666677899999998885   77899999998877766543 3445678888 445566666


Q ss_pred             ecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007          234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s  312 (432)
                      .|  .|.|.|..... +++..+.+|.....||.|+|+|++||+|+.|.. +.+||+...-|++.+..  +.-+|..+.||
T Consensus       166 ~G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isR--ldwpVRTlSFS  240 (313)
T KOG1407|consen  166 NG--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISR--LDWPVRTLSFS  240 (313)
T ss_pred             cC--CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeecc--ccCceEEEEec
Confidence            44  69999988877 778889999999999999999999999999999 99999999999999986  56899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  392 (432)
                      .||++||+|++|..|-|=++++|..+.                                .+    .++++...|+|+|..
T Consensus       241 ~dg~~lASaSEDh~IDIA~vetGd~~~--------------------------------eI----~~~~~t~tVAWHPk~  284 (313)
T KOG1407|consen  241 HDGRMLASASEDHFIDIAEVETGDRVW--------------------------------EI----PCEGPTFTVAWHPKR  284 (313)
T ss_pred             cCcceeeccCccceEEeEecccCCeEE--------------------------------Ee----eccCCceeEEecCCC
Confidence            999999999999999999999998432                                12    256778899999999


Q ss_pred             CEEEEEecC
Q 014007          393 NTVVILGMD  401 (432)
Q Consensus       393 ~~l~~~~~d  401 (432)
                      .+||-++.|
T Consensus       285 ~LLAyA~dd  293 (313)
T KOG1407|consen  285 PLLAYACDD  293 (313)
T ss_pred             ceeeEEecC
Confidence            999988875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.8e-33  Score=226.37  Aligned_cols=254  Identities=15%  Similarity=0.230  Sum_probs=216.6

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~  197 (432)
                      +.++ +|...|.++.|+++.+.+++++.|     |.+.|||.-+...+..++ ....|...+|+|.|.+++   .|+...
T Consensus        49 r~Lk-GH~~Ki~~~~ws~Dsr~ivSaSqD-----GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   49 RTLK-GHLNKIYAMDWSTDSRRIVSASQD-----GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS  122 (343)
T ss_pred             EEec-ccccceeeeEecCCcCeEEeeccC-----CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence            5666 899999999999999999999999     999999999988888888 678899999999999999   488999


Q ss_pred             EEEcCCC------eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcC-C
Q 014007          198 VYNFADL------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQ-D  269 (432)
Q Consensus       198 i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp-~  269 (432)
                      ||++.+.      +..+.+.+|.+-+.++.|-.|+.  ++.  |+.|.++.+||++++ .+..+.+|.+.|.+++++| +
T Consensus       123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT--~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~  198 (343)
T KOG0286|consen  123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILT--GSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD  198 (343)
T ss_pred             EEecccccccccceeeeeecCccceeEEEEEcCCCc--eEe--cCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence            9999854      34567888999999999988653  332  446999999999995 5667899999999999999 9


Q ss_pred             CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 014007          270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP  349 (432)
Q Consensus       270 ~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  349 (432)
                      ++.+++|+-|+. .++||++.+.+++.|.+  |+..|++++|.|+|.-+++|++|++.++||++..+++..+.       
T Consensus       199 ~ntFvSg~cD~~-aklWD~R~~~c~qtF~g--hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-------  268 (343)
T KOG0286|consen  199 GNTFVSGGCDKS-AKLWDVRSGQCVQTFEG--HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-------  268 (343)
T ss_pred             CCeEEecccccc-eeeeeccCcceeEeecc--cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-------
Confidence            999999999999 99999999999999996  67999999999999999999999999999999987543221       


Q ss_pred             CCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007          350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYN  423 (432)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  423 (432)
                                                -..-...|++++||..|++|++|..|.++.+|+.  -+++....+..|
T Consensus       269 --------------------------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt--lk~e~vg~L~GH  314 (343)
T KOG0286|consen  269 --------------------------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT--LKGERVGVLAGH  314 (343)
T ss_pred             --------------------------cCcccCCceeEEEcccccEEEeeecCCceeEeec--cccceEEEeecc
Confidence                                      1111246999999999999999999999999986  334444444443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=9.8e-33  Score=230.49  Aligned_cols=282  Identities=13%  Similarity=0.138  Sum_probs=239.5

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      .......|.+.|.+++.+|+.+++++|+ |+.-.||++.++...  ..+. +|...|+++.|+.++.++++|+.+     
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~--~elt-gHKDSVt~~~FshdgtlLATGdms-----  127 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA--GELT-GHKDSVTCCSFSHDGTLLATGDMS-----  127 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce--eEec-CCCCceEEEEEccCceEEEecCCC-----
Confidence            3456778999999999999999999998 666999999888854  5565 899999999999999999999999     


Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      |.|+||...++.....+. ....+.-+.|+|.+.++++   ||.+.+|.+..+...+.+.+|..++++=.|.|+|++++.
T Consensus       128 G~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  128 GKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             ccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence            999999999998888886 6677888999999888874   999999999998888999999999999999999998765


Q ss_pred             EeecCCCCcEEEEEccCCce-eeee---------------------------------------------------ccCC
Q 014007          232 VCPGLQKGQVRVEHYASKRT-KFIM---------------------------------------------------AHDS  259 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~-~~~~---------------------------------------------------~~~~  259 (432)
                      +   ..||+|++|+..+... ..+.                                                   .+..
T Consensus       208 g---y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~  284 (399)
T KOG0296|consen  208 G---YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEE  284 (399)
T ss_pred             E---ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchh
Confidence            4   4799999999987321 0000                                                   1122


Q ss_pred             ceeEEEEc---CCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          260 RIACFALT---QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       260 ~i~~~~~s---p~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      .+.|+.+.   ..-.+.|+|+.||+ |.|||+...++.+.+.   |+..|..+.|-+ ..+|++++.+|.|+.||.++++
T Consensus       285 ~~esve~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~  359 (399)
T KOG0296|consen  285 LDESVESIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ  359 (399)
T ss_pred             hhhhhhhcccccccchhhcccccce-EEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence            23333333   34467889999999 9999999988888887   888999999988 7899999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      .                                   ...+.+|...|.+++.+|+.+++++++.|++.+||.+
T Consensus       360 l-----------------------------------~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  360 L-----------------------------------KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             e-----------------------------------EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            4                                   4568899999999999999999999999999999876

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=4.6e-34  Score=226.73  Aligned_cols=286  Identities=14%  Similarity=0.158  Sum_probs=244.8

Q ss_pred             cccCCCCCCCeEEEEEcC---CCCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQ---DHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (432)
                      ..+..+|..+|..++|||   +|-+|++++.+ .-.+-+-+++.-+  .+|. +|...|+....+.+-...+++..|   
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi--gtfe-ghkgavw~~~l~~na~~aasaaad---   80 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI--GTFE-GHKGAVWSATLNKNATRAASAAAD---   80 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE--Eeee-ccCcceeeeecCchhhhhhhhccc---
Confidence            456789999999999985   78889999844 4666676777666  7776 899999999999999889999998   


Q ss_pred             CCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCC-eeeEEEeeccCCcceEEEecCCCcE
Q 014007          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  229 (432)
                        -+-++||.-+|..+..++|..-|.+++|+.|..++++   +.-++|||++.. .+..++.+|...|+.+.|....+.+
T Consensus        81 --ftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~i  158 (334)
T KOG0278|consen   81 --FTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCI  158 (334)
T ss_pred             --chhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceE
Confidence              8999999999999999999999999999999999886   457999998874 4567888999999999998876654


Q ss_pred             EEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~  309 (432)
                      + .+  ..|+.|++||.+++..........+|+++.++++|++|.++.. +. |.+||..+..+++.++   .+..|.+.
T Consensus       159 L-SS--add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g-ss-V~Fwdaksf~~lKs~k---~P~nV~SA  230 (334)
T KOG0278|consen  159 L-SS--ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG-SS-VKFWDAKSFGLLKSYK---MPCNVESA  230 (334)
T ss_pred             E-ee--ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC-ce-eEEeccccccceeecc---Cccccccc
Confidence            3 32  5899999999999776655566788999999999998866654 45 9999999999999988   45789999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEc
Q 014007          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG  389 (432)
Q Consensus       310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  389 (432)
                      .++|+...+++|++|+.++.||..+++.+..                                  ..++|-++|.+|.|+
T Consensus       231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~----------------------------------~nkgh~gpVhcVrFS  276 (334)
T KOG0278|consen  231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS----------------------------------YNKGHFGPVHCVRFS  276 (334)
T ss_pred             cccCCCceEEecCcceEEEEEeccCCceeee----------------------------------cccCCCCceEEEEEC
Confidence            9999999999999999999999999984311                                  147899999999999


Q ss_pred             cCCCEEEEEecCCeEEEEEecCCC
Q 014007          390 HQKNTVVILGMDGSFYRCQFDPVN  413 (432)
Q Consensus       390 ~~~~~l~~~~~dg~v~iw~~~~~~  413 (432)
                      |||..-++|++||+|+||...+.+
T Consensus       277 PdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  277 PDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             CCCceeeccCCCceEEEEEecCCC
Confidence            999999999999999999998753

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.1e-32  Score=272.00  Aligned_cols=291  Identities=14%  Similarity=0.193  Sum_probs=225.0

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe----e--EEEeecccCcceeEEEEeeeC-CeEEEecCCCCCC
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR----E--IFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQ  152 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~----~--~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~  152 (432)
                      ...|.+.|++++|+|+|++||+|+ |+.|+||++....    .  .....+.  +...+.+++|++ .+..+++++.|  
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~D--  554 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNFE--  554 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeCC--
Confidence            344899999999999999999998 4559999975321    0  0112232  445788889876 46788999988  


Q ss_pred             CCCCeEEEEeCCCCceeEEee-cCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007          153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       153 ~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                         ++|++||+.+++.+..+. |...|++++|+| ++.++++   |+.|++||++++..+..+..+ ..+.++.|.+...
T Consensus       555 ---g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g  630 (793)
T PLN00181        555 ---GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESG  630 (793)
T ss_pred             ---CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCC
Confidence               999999999999888887 999999999997 6777763   899999999999888887654 5677788865433


Q ss_pred             cEEEEeecCCCCcEEEEEccCC--ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC------ceEEEEEe
Q 014007          228 SLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG------TLLQEVRR  299 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~------~~~~~~~~  299 (432)
                      .. +++ |+.|+.|++||++..  ....+.+|...|.++.|. ++.+|++++.|+. |++||++.+      +++..+.+
T Consensus       631 ~~-lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g  706 (793)
T PLN00181        631 RS-LAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG  706 (793)
T ss_pred             CE-EEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC
Confidence            32 333 458999999999874  356678999999999997 7789999999999 999999743      56777775


Q ss_pred             CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceee--EEEE
Q 014007          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSV--AQFR  377 (432)
Q Consensus       300 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  377 (432)
                        |...+..++|++++.+|++|+.|+.|++|+......+....                        +...+..  ....
T Consensus       707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~------------------------~~~~~~~~~~~~~  760 (793)
T PLN00181        707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYK------------------------FKTIDPVSGLEVD  760 (793)
T ss_pred             --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEe------------------------cccCCcccccccC
Confidence              66789999999999999999999999999987654221100                        0000000  0122


Q ss_pred             ecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          378 LVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       378 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      .+...|.+++|+|++..|++|+.||.|+||++
T Consensus       761 ~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        761 DASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            34567999999999999999999999999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=7.8e-35  Score=241.55  Aligned_cols=280  Identities=14%  Similarity=0.274  Sum_probs=229.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      .......|+|+.+..  ..+++|. |++|+|||.++..+.  +.+. +|.+.|.++.|...  .+++|+.|     .+|+
T Consensus       193 ~Se~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~--~~L~-GHtGSVLCLqyd~r--viisGSSD-----sTvr  260 (499)
T KOG0281|consen  193 RSENSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECL--KILT-GHTGSVLCLQYDER--VIVSGSSD-----STVR  260 (499)
T ss_pred             CcccCCceEEEEecc--hhhhcccccCceEEeccccHHHH--Hhhh-cCCCcEEeeeccce--EEEecCCC-----ceEE
Confidence            344678999999964  4677777 888999998877665  5665 89999999998765  89999999     9999


Q ss_pred             EEeCCCCceeEEee-cCCceEEEEEecCccEEEe-CCeEEEEEcCCCe---eeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLK---LLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       160 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      +||+++|+++.++- |...|..+.|+..-..-++ |.++.+||+....   +.+.+.+|...++.+.|+..    ++++ 
T Consensus       261 vWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k----yIVs-  335 (499)
T KOG0281|consen  261 VWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YIVS-  335 (499)
T ss_pred             EEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc----eEEE-
Confidence            99999999999988 8999999999865444444 8999999987643   34456788888888877654    3443 


Q ss_pred             cCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007          235 GLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       235 g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~  313 (432)
                      .+.|.+|++|++.+ ..++++.+|...|.|+.+  .|+++++|+.|.+ |++||+..|.+++.+++  |+.-|.++.|  
T Consensus       336 ASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeG--HEeLvRciRF--  408 (499)
T KOG0281|consen  336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF--  408 (499)
T ss_pred             ecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhc--hHHhhhheee--
Confidence            34699999999998 456788999999999988  7899999999999 99999999999999996  6789999999  


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC
Q 014007          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN  393 (432)
Q Consensus       314 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  393 (432)
                      |.+.+++|+.||+|+|||+..+.....                          .....++.++..|.+.|..+.|  |..
T Consensus       409 d~krIVSGaYDGkikvWdl~aaldpra--------------------------~~~~~Cl~~lv~hsgRVFrLQF--D~f  460 (499)
T KOG0281|consen  409 DNKRIVSGAYDGKIKVWDLQAALDPRA--------------------------PASTLCLRTLVEHSGRVFRLQF--DEF  460 (499)
T ss_pred             cCceeeeccccceEEEEecccccCCcc--------------------------cccchHHHhhhhccceeEEEee--cce
Confidence            668899999999999999998763321                          1222234566778899999998  567


Q ss_pred             EEEEEecCCeEEEEEecCC
Q 014007          394 TVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       394 ~l~~~~~dg~v~iw~~~~~  412 (432)
                      .+++++.|.+|.||++...
T Consensus       461 qIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  461 QIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             EEEeccCCCeEEEEEcCCC
Confidence            8999999999999999664

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.4e-32  Score=222.59  Aligned_cols=245  Identities=13%  Similarity=0.169  Sum_probs=212.1

Q ss_pred             cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC-CceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEE
Q 014007          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYN  200 (432)
Q Consensus       126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d  200 (432)
                      .+|...|..+.|+|++.++++++.|     ..|.+|++.. -+....++ |.+.|..+.|.+|+..+++   |.+|+.||
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~D-----r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSD-----RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCc-----ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            4899999999999999999999999     9999999543 34455666 9999999999999998884   89999999


Q ss_pred             cCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCC
Q 014007          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (432)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg  280 (432)
                      .++|+.++.++.|...++.+.  |......++++|+.|+++++||++.+...........++++.|..++..+.+|+.|+
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             cccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence            999999999999999888777  666666778889999999999999877666666678899999999999999999999


Q ss_pred             ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEe
Q 014007          281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK  360 (432)
Q Consensus       281 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (432)
                      . |++||++.+..++.+.+  |..+|+.+..+++|.++.+-+.|.++++||++-...                       
T Consensus       197 ~-ikvWd~r~~d~~~~lsG--h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p-----------------------  250 (338)
T KOG0265|consen  197 D-IKVWDLRKNDGLYTLSG--HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP-----------------------  250 (338)
T ss_pred             c-eeeeccccCcceEEeec--ccCceeeEEeccCCCccccccccceEEEEEecccCC-----------------------
Confidence            9 99999999999999996  668999999999999999999999999999987542                       


Q ss_pred             ecccceeecceeeEEEEecC----CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          361 GVLPKYFSSEWSVAQFRLVE----GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                              ..+++..+.+|.    .....++|+|+++.+.+|+.|..+++|+...
T Consensus       251 --------~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  251 --------SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             --------CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence                    223344444443    2456789999999999999999999998644

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-32  Score=244.14  Aligned_cols=278  Identities=13%  Similarity=0.174  Sum_probs=237.0

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      ...+++.|.++.|+|...+++++- .+.|.|||.++...+  +.+. -...+|.+..|-.....+++|++|     ..|+
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV--ksfe-V~~~PvRa~kfiaRknWiv~GsDD-----~~Ir   80 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV--KSFE-VSEVPVRAAKFIARKNWIVTGSDD-----MQIR   80 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceee--eeee-ecccchhhheeeeccceEEEecCC-----ceEE
Confidence            344889999999999999888887 555999998877665  5564 577888999999999999999999     9999


Q ss_pred             EEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC-eeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       160 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      +|+..+++.+..|+ |..-|++++.+|...++.+   |-+|++||.+.. .+.+++++|.+-|..++|.|.....+ ++ 
T Consensus        81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntF-aS-  158 (794)
T KOG0276|consen   81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTF-AS-  158 (794)
T ss_pred             EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccce-ee-
Confidence            99999999999999 9999999999999988884   568999999864 67889999999999999999887765 33 


Q ss_pred             cCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCC--CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007          235 GLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (432)
Q Consensus       235 g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~  311 (432)
                      ++-|++|++|.+.+ .+..++.+|...|+|+.|-+.|  .+|++|+.|.+ |+|||..+..|++++.+  |...|..+.|
T Consensus       159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v~f  235 (794)
T KOG0276|consen  159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFVFF  235 (794)
T ss_pred             eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEEEe
Confidence            45899999999988 4567889999999999998744  69999999999 99999999999999997  5578999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccC
Q 014007          312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ  391 (432)
Q Consensus       312 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  391 (432)
                      +|.-..+++|++||+++||+..+.+..+.                                   +...-++|++++-.+.
T Consensus       236 hp~lpiiisgsEDGTvriWhs~Ty~lE~t-----------------------------------Ln~gleRvW~I~~~k~  280 (794)
T KOG0276|consen  236 HPELPIIISGSEDGTVRIWNSKTYKLEKT-----------------------------------LNYGLERVWCIAAHKG  280 (794)
T ss_pred             cCCCcEEEEecCCccEEEecCcceehhhh-----------------------------------hhcCCceEEEEeecCC
Confidence            99999999999999999999998875432                                   2223345777777777


Q ss_pred             CCEEEEEecCCeEEE
Q 014007          392 KNTVVILGMDGSFYR  406 (432)
Q Consensus       392 ~~~l~~~~~dg~v~i  406 (432)
                      ++.+++|...|.|.+
T Consensus       281 ~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  281 DGKIAVGFDEGSVTV  295 (794)
T ss_pred             CCeEEEeccCCcEEE
Confidence            777777777776654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.5e-33  Score=231.87  Aligned_cols=257  Identities=12%  Similarity=0.168  Sum_probs=225.3

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~  197 (432)
                      ..+. ++...|+.+.|+|+...++++++|     ++|++||..++++...++ |...+.+++|+..|+++++   |-.++
T Consensus       102 ~~l~-g~r~~vt~v~~hp~~~~v~~as~d-----~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen  102 QKLA-GHRSSVTRVIFHPSEALVVSASED-----ATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK  175 (406)
T ss_pred             hhhh-ccccceeeeeeccCceEEEEecCC-----ceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence            4454 689999999999999999999999     999999999999999998 9999999999999999994   55699


Q ss_pred             EEEcCC-CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEE
Q 014007          198 VYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLAT  275 (432)
Q Consensus       198 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~  275 (432)
                      +||..+ .++++.+.+|...+.+++|-|.|+++  ++ .+.|.+|+.|++.++ .++++.+|...|..++.+.||.++|+
T Consensus       176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~i--lS-~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As  252 (406)
T KOG0295|consen  176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHI--LS-CSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS  252 (406)
T ss_pred             heeHHHHHHHHHHhcCcccceeeEEEEecCCee--ee-cccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence            999987 57778888999999999999999754  33 348999999999995 67789999999999999999999999


Q ss_pred             EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC---------------CCEEEEEeCCCeEEEEEecCCCCCCC
Q 014007          276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN---------------AQWLAVSSDKGTVHVFNLKVNSGSAR  340 (432)
Q Consensus       276 ~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~  340 (432)
                      ++.|.+ |++|-+.++++...+..  |+-+|-+++|-|.               ++++.+++.|++|++||+.++.+   
T Consensus       253 ~s~dqt-l~vW~~~t~~~k~~lR~--hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c---  326 (406)
T KOG0295|consen  253 CSNDQT-LRVWVVATKQCKAELRE--HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC---  326 (406)
T ss_pred             cCCCce-EEEEEeccchhhhhhhc--cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE---
Confidence            999999 99999999999888886  5578999998762               35899999999999999999873   


Q ss_pred             CCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEe
Q 014007          341 SEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQL  420 (432)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~  420 (432)
                                                      +.++.+|++.|..++|+|.|++|+++.+|+++++|++..  +..+..+
T Consensus       327 --------------------------------L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~--~~cmk~~  372 (406)
T KOG0295|consen  327 --------------------------------LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN--LQCMKTL  372 (406)
T ss_pred             --------------------------------EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc--ceeeecc
Confidence                                            668999999999999999999999999999999999844  4555566


Q ss_pred             eecccCC
Q 014007          421 EYNNFLK  427 (432)
Q Consensus       421 ~~~~~~~  427 (432)
                      +.++.+-
T Consensus       373 ~ah~hfv  379 (406)
T KOG0295|consen  373 EAHEHFV  379 (406)
T ss_pred             CCCccee
Confidence            6665543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-32  Score=247.56  Aligned_cols=282  Identities=16%  Similarity=0.230  Sum_probs=237.0

Q ss_pred             cccCCCCCCCeEEEEE-cCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISF-NQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~-s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ...+-+-.+.|..|+| .|+.++||++++.. +|+|++.+..+.   .+. +|...|.++....++.++++++.|     
T Consensus       316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~-GH~e~vlSL~~~~~g~llat~sKD-----  386 (775)
T KOG0319|consen  316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIP-GHTEAVLSLDVWSSGDLLATGSKD-----  386 (775)
T ss_pred             ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEe-CchhheeeeeecccCcEEEEecCC-----
Confidence            3455667788999988 56778999998666 999988776654   343 899999999966777999999999     


Q ss_pred             CeEEEEeCCCCc----eeEEee-cCCceEEEEEecCcc-EEE---eCCeEEEEEcCCCee-----e----EEEeeccCCc
Q 014007          156 NKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKL-----L----HQIETIANPK  217 (432)
Q Consensus       156 ~~v~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~-----~----~~~~~~~~~~  217 (432)
                      .++++|.++++.    ++.... |.+.|.+++++..+. +++   .|.++++|++...+.     .    .....|...|
T Consensus       387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI  466 (775)
T KOG0319|consen  387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI  466 (775)
T ss_pred             ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence            999999875442    334444 999999999987654 333   289999999986221     1    1234688899


Q ss_pred             ceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~  296 (432)
                      ++++++|+..  +++ +|+.|.+.+||++.... ..++.+|...|.|+.|+|..+.|+|+|.|.+ |+||.+.+..|+++
T Consensus       467 N~Vaia~ndk--LiA-T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT  542 (775)
T KOG0319|consen  467 NCVAIAPNDK--LIA-TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKT  542 (775)
T ss_pred             cceEecCCCc--eEE-ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeee
Confidence            9999999976  445 46799999999999744 4578999999999999999999999999999 99999999999999


Q ss_pred             EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE
Q 014007          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF  376 (432)
Q Consensus       297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (432)
                      |.+  |...|..+.|-.+|+.|++++.||-|++|++++.+++                                   .++
T Consensus       543 ~eG--H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~-----------------------------------~tl  585 (775)
T KOG0319|consen  543 FEG--HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE-----------------------------------MTL  585 (775)
T ss_pred             ecC--ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh-----------------------------------hhh
Confidence            996  6799999999999999999999999999999999864                                   467


Q ss_pred             EecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          377 RLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       377 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      ..|++.|++++.++...++++|+.||.|.+|.=
T Consensus       586 D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  586 DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             hhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence            789999999999999999999999999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.1e-32  Score=245.26  Aligned_cols=283  Identities=20%  Similarity=0.310  Sum_probs=221.4

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE--EEecCCCCCCCCCCe
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQYPLNK  157 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~~~~~~  157 (432)
                      ...|..+|.-++|+|.|.+|++|+ |+.+++||+....+.  ..|+ +|.+.|..+.|+|+..  .+++|..|     +.
T Consensus       101 Ka~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t--h~fk-G~gGvVssl~F~~~~~~~lL~sg~~D-----~~  172 (775)
T KOG0319|consen  101 KAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT--HSFK-GHGGVVSSLLFHPHWNRWLLASGATD-----GT  172 (775)
T ss_pred             hhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE--EEec-CCCceEEEEEeCCccchhheeecCCC-----ce
Confidence            344999999999999999999998 666999999877766  7787 8999999999988654  58888888     99


Q ss_pred             EEEEeCCCCce-eEEee-cCCceEEEEEecCcc-----------------------------------------------
Q 014007          158 VMIWDDHQSRC-IGELS-FRSEVRSVKLRRDRI-----------------------------------------------  188 (432)
Q Consensus       158 v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~-----------------------------------------------  188 (432)
                      |++||+.+... +..+. |.+.|+++++++|+.                                               
T Consensus       173 v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~  252 (775)
T KOG0319|consen  173 VRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEY  252 (775)
T ss_pred             EEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceE
Confidence            99999875432 44444 555555555555542                                               


Q ss_pred             --------------------------------------------------------------------------------
Q 014007          189 --------------------------------------------------------------------------------  188 (432)
Q Consensus       189 --------------------------------------------------------------------------------  188 (432)
                                                                                                      
T Consensus       253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l  332 (775)
T KOG0319|consen  253 IITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL  332 (775)
T ss_pred             EEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec
Confidence                                                                                            


Q ss_pred             ----------------------------------------------EEEe---CCeEEEEEcCCCe----eeEEEeeccC
Q 014007          189 ----------------------------------------------IVVL---EQKIFVYNFADLK----LLHQIETIAN  215 (432)
Q Consensus       189 ----------------------------------------------~~~~---d~~i~i~d~~~~~----~~~~~~~~~~  215 (432)
                                                                    ++++   |.++++|.++++.    ++....+|.+
T Consensus       333 G~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~  412 (775)
T KOG0319|consen  333 GPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN  412 (775)
T ss_pred             CCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc
Confidence                                                          2221   3444444442211    1223344555


Q ss_pred             CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----e------eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----T------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v  285 (432)
                      .+.+++++..+..+ +++ ++.|+++++|++...+    .      .....|...|+|++++|+.+++|||+.|.+ .+|
T Consensus       413 svgava~~~~~asf-fvs-vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt-aKi  489 (775)
T KOG0319|consen  413 SVGAVAGSKLGASF-FVS-VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT-AKI  489 (775)
T ss_pred             ccceeeecccCccE-EEE-ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc-eee
Confidence            55666665554444 343 4689999999998711    1      123579999999999999999999999999 999


Q ss_pred             EECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK  365 (432)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (432)
                      |++..++.+.++.+  |...|+++.|+|..+.++++|.|++|+||.+.+..+                            
T Consensus       490 W~le~~~l~~vLsG--H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC----------------------------  539 (775)
T KOG0319|consen  490 WDLEQLRLLGVLSG--HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC----------------------------  539 (775)
T ss_pred             ecccCceEEEEeeC--CccceEEEEeccccceeEeccCCceEEEEEecccee----------------------------
Confidence            99999999999996  678999999999999999999999999999999875                            


Q ss_pred             eeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                             +.++.+|...|..+.|-.+|+.|++++.||-+++|++..
T Consensus       540 -------lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  540 -------LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             -------eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence                   557889999999999999999999999999999999855

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.8e-30  Score=226.59  Aligned_cols=304  Identities=15%  Similarity=0.180  Sum_probs=240.1

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCcee
Q 014007           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~  169 (432)
                      -|.-.|.|..++....+.|.+-+++.....  ..+. .|...++-..|+|.|.++++|+..     |+|+|||....+.+
T Consensus        23 ~ig~dpkgd~ilY~nGksv~ir~i~~~~~~--~iYt-EH~~~vtVAkySPsG~yiASGD~s-----G~vRIWdtt~~~hi   94 (603)
T KOG0318|consen   23 IIGGDPKGDNILYTNGKSVIIRNIDNPASV--DIYT-EHAHQVTVAKYSPSGFYIASGDVS-----GKVRIWDTTQKEHI   94 (603)
T ss_pred             EeccCCCCCeEEEeCCCEEEEEECCCccce--eeec-cccceeEEEEeCCCceEEeecCCc-----CcEEEEeccCccee
Confidence            356678888888887777888888776654  3443 688888888999999999999998     99999998764433


Q ss_pred             --EEee-cCCceEEEEEecCccEEEe--CC-----eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007          170 --GELS-FRSEVRSVKLRRDRIIVVL--EQ-----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (432)
Q Consensus       170 --~~~~-~~~~v~~~~~~~~~~~~~~--d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (432)
                        .+++ ..++|..|+|+.+++.++.  +|     .+.+||  +|..+-++.+|...+..+.|-|.....+ + ++++|+
T Consensus        95 LKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi-~-T~sdDn  170 (603)
T KOG0318|consen   95 LKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRI-A-TGSDDN  170 (603)
T ss_pred             eeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEE-E-eccCCC
Confidence              3444 7899999999999988884  32     466666  6778888999999999999999877654 3 356999


Q ss_pred             cEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEE-eCCCcCceEEEEECCCCCE
Q 014007          240 QVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSSNAQW  317 (432)
Q Consensus       240 ~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~  317 (432)
                      .|.+|+-.- +-...+..|..-|+|+.|+|||.++++.+.||+ |.+||-.+++.+..+. ...|.+.|..++|+||++.
T Consensus       171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~  249 (603)
T KOG0318|consen  171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ  249 (603)
T ss_pred             eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCCCccEEEEecCCCCccccEEEEEECCCCce
Confidence            999997544 223456789999999999999999999999999 9999999999999998 3458899999999999999


Q ss_pred             EEEEeCCCeEEEEEecCCCCCCCCCCCCC-------CCC-------CCCCCCceeEeecccceeecceeeEEEEecCCCc
Q 014007          318 LAVSSDKGTVHVFNLKVNSGSARSEPRST-------SDP-------TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP  383 (432)
Q Consensus       318 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  383 (432)
                      |++++.|.+++|||+.+.+.+++......       ..+       .+....+.|+...      .......+.+|...|
T Consensus       250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~------d~~~~~~i~GHnK~I  323 (603)
T KOG0318|consen  250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPS------DPSVLKVISGHNKSI  323 (603)
T ss_pred             EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEeccc------CCChhheecccccce
Confidence            99999999999999999987776652222       000       1111111111100      011255788999999


Q ss_pred             eEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          384 YIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       384 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      +++..++|+++|++|+.||.|.-|+....
T Consensus       324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g  352 (603)
T KOG0318|consen  324 TALTVSPDGKTIYSGSYDGHINSWDSGSG  352 (603)
T ss_pred             eEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence            99999999999999999999999998654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.6e-32  Score=246.81  Aligned_cols=266  Identities=16%  Similarity=0.219  Sum_probs=214.1

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecC
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD  186 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~  186 (432)
                      +.+.|-+.....  +.+. +|..+|....|+|+..+|++++.|     ++|++|.+.+..++-.++ |..+|+.+.|+|-
T Consensus       433 ~~~~D~~~~~~~--~~L~-GH~GPVyg~sFsPd~rfLlScSED-----~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~  504 (707)
T KOG0263|consen  433 VDMLDDDSSGTS--RTLY-GHSGPVYGCSFSPDRRFLLSCSED-----SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR  504 (707)
T ss_pred             hhhccccCCcee--EEee-cCCCceeeeeecccccceeeccCC-----cceeeeecccceeEEEecCCCcceeeEEecCC
Confidence            445554333332  4455 899999999999999999999999     999999999999999998 9999999999999


Q ss_pred             ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCcee
Q 014007          187 RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIA  262 (432)
Q Consensus       187 ~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~  262 (432)
                      |.++++   |++-++|.....++++.+.+|...+.++.|+|+..+  ++ +|+.|.+|++||+.++ .++.+.+|.++|.
T Consensus       505 GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y--~a-TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~  581 (707)
T KOG0263|consen  505 GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNY--VA-TGSSDRTVRLWDVSTGNSVRIFTGHKGPVT  581 (707)
T ss_pred             ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccc--cc-cCCCCceEEEEEcCCCcEEEEecCCCCceE
Confidence            999995   889999999999999999999999999999999874  44 4679999999999884 5677889999999


Q ss_pred             EEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCC
Q 014007          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (432)
Q Consensus       263 ~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  342 (432)
                      +++|||+|++|++|+.|+. |.+||+.+++.+..+.+  |.+.|.++.||.||..||+|+.|++|++||+..........
T Consensus       582 al~~Sp~Gr~LaSg~ed~~-I~iWDl~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~  658 (707)
T KOG0263|consen  582 ALAFSPCGRYLASGDEDGL-IKIWDLANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLG  658 (707)
T ss_pred             EEEEcCCCceEeecccCCc-EEEEEcCCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccc
Confidence            9999999999999999999 99999999999999986  57999999999999999999999999999998765431000


Q ss_pred             CCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE
Q 014007          343 PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL  398 (432)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  398 (432)
                      ..+....           ............+..+.....+|..+.|.-.+-.|++|
T Consensus       659 ~~~~~~~-----------~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  659 HISTSNS-----------AITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             ccccccc-----------cccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence            0000000           00000001112244555556678889998766555554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.5e-31  Score=241.10  Aligned_cols=281  Identities=14%  Similarity=0.166  Sum_probs=244.4

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      -...+|...|.++++|.+...+++|+.+.++||+.++.++.  +++.   ...+.+..|-|...+++.|...     |.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kci--RTi~---~~y~l~~~Fvpgd~~Iv~G~k~-----Gel  436 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCI--RTIT---CGYILASKFVPGDRYIVLGTKN-----GEL  436 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCccee--EEec---cccEEEEEecCCCceEEEeccC-----Cce
Confidence            45678999999999999999999998888999999988887  5553   2388899999999999999998     999


Q ss_pred             EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC-----Ceee--------EEEeeccCCcceEE
Q 014007          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD-----LKLL--------HQIETIANPKGLCA  221 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~-----~~~~--------~~~~~~~~~~~~~~  221 (432)
                      .+||+.+...+.+++ |.+.|+.++.+||+..+++   |.+|++||..-     +...        +++ ...+.+.++.
T Consensus       437 ~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~  515 (888)
T KOG0306|consen  437 QVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVS  515 (888)
T ss_pred             EEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEE
Confidence            999999999888888 9999999999999987773   89999999742     1111        122 2356788999


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~  300 (432)
                      ++||++.+++.   --|.+|+||-+++-+ ...+.+|.-+|.||.++||++.++||+.|.+ |++|-+.=|.|-+.+-. 
T Consensus       516 ~Spdgk~LaVs---LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fA-  590 (888)
T KOG0306|consen  516 VSPDGKLLAVS---LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFA-  590 (888)
T ss_pred             EcCCCcEEEEE---eccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhc-
Confidence            99999866543   489999999999844 4568899999999999999999999999999 99999999999988875 


Q ss_pred             CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC
Q 014007          301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE  380 (432)
Q Consensus       301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (432)
                       |...|.++.|-|+...+.+++.|+.|+-||-...+.                                   +..+.+|.
T Consensus       591 -HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~-----------------------------------iq~L~~H~  634 (888)
T KOG0306|consen  591 -HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE-----------------------------------IQKLDGHH  634 (888)
T ss_pred             -ccCceeEEEEcccceeEEEecCcceEEeechhhhhh-----------------------------------heeeccch
Confidence             778999999999999999999999999999988774                                   45678899


Q ss_pred             CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          381 GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       381 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      ..|++++.+|+|.++++++.|.+|++|.-..
T Consensus       635 ~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  635 SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            9999999999999999999999999998644

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.3e-33  Score=233.70  Aligned_cols=243  Identities=14%  Similarity=0.190  Sum_probs=213.6

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      .+...|...|+++.|+++|.++++|+.++ |++|+.+-.. +  +.+..+|...|.+++|+|+...++++++|     |+
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-V--k~~~ahh~eaIRdlafSpnDskF~t~SdD-----g~  203 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-V--KIIQAHHAEAIRDLAFSPNDSKFLTCSDD-----GT  203 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-h--HHhhHhhhhhhheeccCCCCceeEEecCC-----Ce
Confidence            56788999999999999999999999777 9999864322 2  33443566999999999999999999999     99


Q ss_pred             EEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      |+|||....+....+. |.-.|.+++|+|..-++++   |+.|++||.++++++.++..|++.|..+.|.++++.+  ++
T Consensus       204 ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~L--lt  281 (464)
T KOG0284|consen  204 IKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWL--LT  281 (464)
T ss_pred             EEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCee--EE
Confidence            9999999888888888 9999999999998877775   7799999999999999999999999999999999643  43


Q ss_pred             ecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007          234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~  311 (432)
                       ++.|..++++|+++ +++..+++|...++++.|+| ...+|.+|+.||. |..|.+...+.+..+.. +|...|++++|
T Consensus       282 -~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~-AHd~~iwsl~~  358 (464)
T KOG0284|consen  282 -GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPP-AHDGEIWSLAY  358 (464)
T ss_pred             -ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCc-ccccceeeeec
Confidence             45999999999995 77888999999999999999 5678899999999 99999886777766664 48899999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecC
Q 014007          312 SSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       312 s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      +|-|..|++|+.|.++++|....
T Consensus       359 hPlGhil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  359 HPLGHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             cccceeEeecCCCcceeeeccCC
Confidence            99999999999999999997654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.3e-30  Score=242.32  Aligned_cols=255  Identities=21%  Similarity=0.309  Sum_probs=212.3

Q ss_pred             ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc--eeEEee-cCCceEEEEEecCccEEEe---CCeE
Q 014007          123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRDRIIVVL---EQKI  196 (432)
Q Consensus       123 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i  196 (432)
                      .+...+...+.++.|++++..+++++.+     +.+++|+...++  ....+. |...|.+++|+|++.++++   |++|
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti  227 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSD-----GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL  227 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCC-----CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceE
Confidence            3333457888999999999999999998     999999997777  666665 9999999999999998884   8999


Q ss_pred             EEEEc-CCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEE
Q 014007          197 FVYNF-ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLA  274 (432)
Q Consensus       197 ~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~  274 (432)
                      +|||+ ..+..++++.+|...+.+++|+|+++ + ++ +|+.|+.|++||+++ .....+.+|...|.+++|++++++|+
T Consensus       228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-~-i~-Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~  304 (456)
T KOG0266|consen  228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-L-LV-SGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV  304 (456)
T ss_pred             EEeeccCCCeEEEEecCCCCceEEEEecCCCC-E-EE-EecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence            99999 45689999999999999999999994 3 33 356899999999998 56678999999999999999999999


Q ss_pred             EEcCCCceEEEEECCCCc--eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007          275 TSSTKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (432)
Q Consensus       275 ~~~~dg~~i~vwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (432)
                      +++.|+. |++||+.++.  ++..+........++++.|+|++.+|++++.|+.+++||+..+..+.             
T Consensus       305 s~s~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~-------------  370 (456)
T KOG0266|consen  305 SASYDGT-IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG-------------  370 (456)
T ss_pred             EcCCCcc-EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee-------------
Confidence            9999999 9999999999  56777654322269999999999999999999999999999887543             


Q ss_pred             CCCceeEeecccceeecceeeEEEEecCC---CceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEG---SPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYN  423 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  423 (432)
                                            ...+|..   .+.....++.+.++++|+.|+.|++|++..  ++.+.+++.+
T Consensus       371 ----------------------~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s--~~~~~~l~~h  420 (456)
T KOG0266|consen  371 ----------------------TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS--GGILQRLEGH  420 (456)
T ss_pred             ----------------------eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc--cchhhhhcCC
Confidence                                  2334443   233445577999999999999999998854  4555555554

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.3e-28  Score=202.75  Aligned_cols=277  Identities=15%  Similarity=0.217  Sum_probs=213.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEee--eCCeEEEecCCCCCCCCCCeEEE
Q 014007           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      -...|+++.|+++|.+|++++ |+.++|||...++..  +.+. .+...+-.+.|  .++.....+...|     .+|+.
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~--~ti~-skkyG~~~~~Fth~~~~~i~sStk~d-----~tIry   84 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV--KTIN-SKKYGVDLACFTHHSNTVIHSSTKED-----DTIRY   84 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee--eEee-cccccccEEEEecCCceEEEccCCCC-----CceEE
Confidence            567899999999999998877 667999999888776  4443 34334444444  4444444444456     89999


Q ss_pred             EeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecC
Q 014007          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (432)
Q Consensus       161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (432)
                      .++.+.+.++.+. |...|.+++.+|-+..+++   |++|++||++..++...+.....  .+++|+|.|-.+++++   
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~---  159 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALAN---  159 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEec---
Confidence            9999999999999 9999999999997766663   99999999998877766654333  4688999875444332   


Q ss_pred             CCCcEEEEEccC---Cceeeee---ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC-ceEEE
Q 014007          237 QKGQVRVEHYAS---KRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA-EIYSL  309 (432)
Q Consensus       237 ~d~~i~i~d~~~---~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~-~i~~~  309 (432)
                      ....|++||++.   ++...+.   +.....+.|.|+|||++|+.+...+. +++.|.-+|..+..+....... --.+.
T Consensus       160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a  238 (311)
T KOG1446|consen  160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSA  238 (311)
T ss_pred             CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeE
Confidence            344999999987   4444443   34677899999999999999999999 9999999999999988754333 23578


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe-cCCCceEEEE
Q 014007          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAF  388 (432)
Q Consensus       310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  388 (432)
                      +|+||++++++|+.||+|++|+++++..                                   +..+++ +.+.+.++.|
T Consensus       239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~-----------------------------------v~~~~~~~~~~~~~~~f  283 (311)
T KOG1446|consen  239 TFTPDSKFVLSGSDDGTIHVWNLETGKK-----------------------------------VAVLRGPNGGPVSCVRF  283 (311)
T ss_pred             EECCCCcEEEEecCCCcEEEEEcCCCcE-----------------------------------eeEecCCCCCCcccccc
Confidence            8999999999999999999999998873                                   334555 4678999999


Q ss_pred             ccCCCEEEEEecCCeEEEEEecC
Q 014007          389 GHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       389 s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +|.-..++  +.+..+.+|-.+.
T Consensus       284 nP~~~mf~--sa~s~l~fw~p~~  304 (311)
T KOG1446|consen  284 NPRYAMFV--SASSNLVFWLPDE  304 (311)
T ss_pred             CCceeeee--ecCceEEEEeccc
Confidence            99755555  4455677776543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.98  E-value=2.4e-30  Score=216.31  Aligned_cols=244  Identities=17%  Similarity=0.231  Sum_probs=206.1

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .-.+.+|.+.|+|+.||.||.+||+|. ++.|+||+..++....  .+. .....+.-+.|+|....++.|+.|     |
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~--~~~-~e~~dieWl~WHp~a~illAG~~D-----G  170 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW--KLD-QEVEDIEWLKWHPRAHILLAGSTD-----G  170 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE--Eee-cccCceEEEEecccccEEEeecCC-----C
Confidence            356789999999999999999999999 6669999998887663  332 356678889999999999999999     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccC-----------------
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN-----------------  215 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~-----------------  215 (432)
                      .|.+|.+.++...+.+. |..++++-.|.|+|+.++.   ||+|++||+.++++++.+....+                 
T Consensus       171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~  250 (399)
T KOG0296|consen  171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK  250 (399)
T ss_pred             cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence            99999999987777787 9999999999999998883   99999999999988777651110                 


Q ss_pred             ----------------------------------CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCce
Q 014007          216 ----------------------------------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (432)
Q Consensus       216 ----------------------------------~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i  261 (432)
                                                        .+.++.+.|....+-+++.|+.||+|.|||+....++..-.|+..|
T Consensus       251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V  330 (399)
T KOG0296|consen  251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGV  330 (399)
T ss_pred             ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCce
Confidence                                              0011122222233334455779999999999999999999999999


Q ss_pred             eEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          262 ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       262 ~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      ..+.|-+ ..+|++++.+|. |+.||.++|+++.++.+  |...|.+++++|+++++++++.|++.+||++.
T Consensus       331 ~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  331 TKLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEEcC-cchheeeccCce-EEeeeccccceEEEEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999998 789999999999 99999999999999996  66899999999999999999999999999875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.6e-30  Score=239.73  Aligned_cols=279  Identities=16%  Similarity=0.239  Sum_probs=236.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007           83 SPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw  161 (432)
                      ..+..|..++|+|...++.++-- +.|++||..-+.++  ..|. .|.++|..++|++...++++|++|     .+|++|
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--~rFd-eHdGpVRgv~FH~~qplFVSGGDD-----ykIkVW   78 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--DRFD-EHDGPVRGVDFHPTQPLFVSGGDD-----YKIKVW   78 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhhhHH--hhhh-ccCCccceeeecCCCCeEEecCCc-----cEEEEE
Confidence            34678899999999999999884 44999998755544  5565 799999999999999999999999     999999


Q ss_pred             eCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCC
Q 014007          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (432)
Q Consensus       162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (432)
                      +.++.+++.++. |-..|..+.|++.--++++   |.+|+||+..+++++..+.+|.+-|.+..|+|..+.+  + +++-
T Consensus        79 nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI--V-SaSL  155 (1202)
T KOG0292|consen   79 NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI--V-SASL  155 (1202)
T ss_pred             ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceE--E-Eecc
Confidence            999999999988 9999999999999988884   7799999999999999999999999999999977643  3 3558


Q ss_pred             CCcEEEEEccCCc------------------------------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007          238 KGQVRVEHYASKR------------------------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       238 d~~i~i~d~~~~~------------------------------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd  287 (432)
                      |.+|++||+..-+                              ...+.+|...|+.++|+|.-.++++|+.|+. |++|.
T Consensus       156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWr  234 (1202)
T KOG0292|consen  156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWR  234 (1202)
T ss_pred             cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEE
Confidence            9999999987510                              1345789999999999999999999999999 99999


Q ss_pred             CCCCceE--EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007          288 TLDGTLL--QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK  365 (432)
Q Consensus       288 ~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (432)
                      +...+.-  .+..  +|...|.++-|+|...++++.++|++|+|||+...+.                            
T Consensus       235 mnetKaWEvDtcr--gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~----------------------------  284 (1202)
T KOG0292|consen  235 MNETKAWEVDTCR--GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS----------------------------  284 (1202)
T ss_pred             eccccceeehhhh--cccCCcceEEecCccceeEecCCCccEEEEecccccc----------------------------
Confidence            8765543  2334  3778999999999999999999999999999988764                            


Q ss_pred             eeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                             +.+++..++..+.++-+|..++++ ++.|+-+.+|.++.
T Consensus       285 -------v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VFkleR  322 (1202)
T KOG0292|consen  285 -------VQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVFKLER  322 (1202)
T ss_pred             -------eeeeeccCCeEEEEEecCCcceee-eecCCceEEEEEcc
Confidence                   335555667788999999888776 55566777888864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=8.7e-30  Score=220.66  Aligned_cols=275  Identities=16%  Similarity=0.196  Sum_probs=226.9

Q ss_pred             CCCCeEEEEEcCCCCE-EEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007           84 PPPTLLHISFNQDHGC-FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~-l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      ..+.|.+++|+|...+ +|+++.-.+.||+..+....  +.+. .-...+.++.|..||..++.|+..     |.|++||
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~--k~~s-rFk~~v~s~~fR~DG~LlaaGD~s-----G~V~vfD   96 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVR--KTFS-RFKDVVYSVDFRSDGRLLAAGDES-----GHVKVFD   96 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhhh--hhHH-hhccceeEEEeecCCeEEEccCCc-----CcEEEec
Confidence            3578999999997654 88888888999997655433  4343 456788999999999999999998     9999999


Q ss_pred             CCCCceeEEee-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCC
Q 014007          163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (432)
Q Consensus       163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (432)
                      ..+...++.+. |..++..+.|+|++..++ +   |+.+++||+.+......+.+|.+-|++.+++|..+++++  +|+.
T Consensus        97 ~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv--tGsY  174 (487)
T KOG0310|consen   97 MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV--TGSY  174 (487)
T ss_pred             cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE--ecCC
Confidence            77766777787 999999999999766555 2   668999999998876688999999999999999887654  5779


Q ss_pred             CCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC
Q 014007          238 KGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (432)
Q Consensus       238 d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  316 (432)
                      ||.|++||++.. ....-..|..+|..+.+-|.|..+++++.+.  |+|||+-+|..+-.... .|...|+|+++..++.
T Consensus       175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~--vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~  251 (487)
T KOG0310|consen  175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNS--VKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDST  251 (487)
T ss_pred             CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCe--EEEEEecCCceehhhhh-cccceEEEEEeecCCc
Confidence            999999999986 4444557999999999999999999988764  99999986654433332 2668999999999999


Q ss_pred             EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEE
Q 014007          317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV  396 (432)
Q Consensus       317 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  396 (432)
                      .|++++-|+.|++||+.+.+.+                                   ..++. .++|.+++.+||++.++
T Consensus       252 rLlS~sLD~~VKVfd~t~~Kvv-----------------------------------~s~~~-~~pvLsiavs~dd~t~v  295 (487)
T KOG0310|consen  252 RLLSGSLDRHVKVFDTTNYKVV-----------------------------------HSWKY-PGPVLSIAVSPDDQTVV  295 (487)
T ss_pred             eEeecccccceEEEEccceEEE-----------------------------------Eeeec-ccceeeEEecCCCceEE
Confidence            9999999999999998876621                                   12222 35799999999999999


Q ss_pred             EEecCCeEEEE
Q 014007          397 ILGMDGSFYRC  407 (432)
Q Consensus       397 ~~~~dg~v~iw  407 (432)
                      .|-.||.+.+=
T Consensus       296 iGmsnGlv~~r  306 (487)
T KOG0310|consen  296 IGMSNGLVSIR  306 (487)
T ss_pred             Eecccceeeee
Confidence            99999998874

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=9.5e-31  Score=208.44  Aligned_cols=274  Identities=17%  Similarity=0.188  Sum_probs=215.9

Q ss_pred             EEEEEcC--CCCEE-EEEc------CCcEEEEEcC-CCeeEEEeecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCe
Q 014007           89 LHISFNQ--DHGCF-AAGT------DHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNK  157 (432)
Q Consensus        89 ~~~~~s~--~~~~l-~~~~------~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~  157 (432)
                      +++.|||  ++++. |++.      .+.+.|.+++ .........+.  -...+.+++|+++. ..++++..|     |.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d--~~D~LfdV~Wse~~e~~~~~a~GD-----GS   84 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD--TEDGLFDVAWSENHENQVIAASGD-----GS   84 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee--cccceeEeeecCCCcceEEEEecC-----ce
Confidence            5679998  34432 2321      2338888885 33333334553  67788999998753 445555556     99


Q ss_pred             EEEEeCCC-CceeEEee-cCCceEEEEEecCccEEE--e--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          158 VMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV--L--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       158 v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~--~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      +++||+.. ..++..++ |...|.++.|++..+...  +  |++|++|+....+.++++.+|...|....|+|....++.
T Consensus        85 Lrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa  164 (311)
T KOG0277|consen   85 LRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFA  164 (311)
T ss_pred             EEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEE
Confidence            99999643 35778887 999999999998544333  2  999999999999999999999999999999999888765


Q ss_pred             EeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCc-eEEEEEeCCCcCceEE
Q 014007          232 VCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYS  308 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~  308 (432)
                      .+  +.|+.+++||++. ++...+..|...|.|+.|+. +.+.|+||+.|+. ||+||++..+ ++.++.+  |.-.|..
T Consensus       165 s~--Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~AVRk  239 (311)
T KOG0277|consen  165 SA--SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLAVRK  239 (311)
T ss_pred             Ec--cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceEEEE
Confidence            44  4699999999988 55566899999999999998 6678999999999 9999999754 5666654  6789999


Q ss_pred             EEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007          309 LAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (432)
Q Consensus       309 ~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  387 (432)
                      +.|||.. ..||+++.|-+++|||...+...                                  +.+...|.+-|..+.
T Consensus       240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~----------------------------------~e~~~~HtEFv~g~D  285 (311)
T KOG0277|consen  240 VKFSPHHASLLASASYDMTVRIWDPERQDSA----------------------------------IETVDHHTEFVCGLD  285 (311)
T ss_pred             EecCcchhhHhhhccccceEEecccccchhh----------------------------------hhhhhccceEEeccc
Confidence            9999964 57899999999999999876532                                  223456777888999


Q ss_pred             Ecc-CCCEEEEEecCCeEEEEE
Q 014007          388 FGH-QKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       388 ~s~-~~~~l~~~~~dg~v~iw~  408 (432)
                      ||+ ++.++|+++.|+.++||+
T Consensus       286 ws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  286 WSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             cccccCceeeecccccceeeec
Confidence            998 788999999999999997

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=5.1e-31  Score=217.12  Aligned_cols=284  Identities=14%  Similarity=0.216  Sum_probs=238.7

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecc-----cCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQY  153 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (432)
                      +.-+....+.|..|+|||++|++|+-+| |.+||..+++......++     --+...|.++.|+.+...+++|+.|   
T Consensus       208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD---  284 (508)
T KOG0275|consen  208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD---  284 (508)
T ss_pred             eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC---
Confidence            3344566788999999999999999555 999999877654211111     1366789999999999999999999   


Q ss_pred             CCCeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          154 PLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                        |.|++|.+.+|.+++.+.  |...|+++.|+.|+..+.+   |.++++.-++.|++++++++|..-++...|.++|.+
T Consensus       285 --GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~  362 (508)
T KOG0275|consen  285 --GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH  362 (508)
T ss_pred             --CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCe
Confidence              999999999999999998  9999999999999887773   889999999999999999999999999999999997


Q ss_pred             EEEEeecCCCCcEEEEEccCC-ceeeee--ccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC-c
Q 014007          229 LVLVCPGLQKGQVRVEHYASK-RTKFIM--AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-R  303 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~-~~~~~~--~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~-~  303 (432)
                      ++-+   +.||+|++|+..+. ++.++.  +.+.+|.++-.-| +...++++...++ |+|-++ .|+.++.+..+.. .
T Consensus       363 iisa---SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~-qGQvVrsfsSGkREg  437 (508)
T KOG0275|consen  363 IISA---SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNM-QGQVVRSFSSGKREG  437 (508)
T ss_pred             EEEe---cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEec-cceEEeeeccCCccC
Confidence            7544   37999999999884 344444  4566788888777 5578889999999 999986 7888888875432 2


Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCc
Q 014007          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP  383 (432)
Q Consensus       304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  383 (432)
                      +...+.+.||.|.++.+.++|+.++.|.+.+++..                                   .++..|+..|
T Consensus       438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE-----------------------------------~tl~VhEkdv  482 (508)
T KOG0275|consen  438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE-----------------------------------RTLPVHEKDV  482 (508)
T ss_pred             CceEEEEecCCCcEEEEEccCcEEEEEEeecCcee-----------------------------------eeeecccccc
Confidence            45677889999999999999999999999998732                                   2466788888


Q ss_pred             eEEEEccCCCEEEEEecCCeEEEEE
Q 014007          384 YIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       384 ~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      -.++-+|..+.||+-++||.+++|.
T Consensus       483 IGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  483 IGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccCcccchhhhhcccchhhhcC
Confidence            8999999999999999999999985

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.3e-30  Score=203.11  Aligned_cols=235  Identities=16%  Similarity=0.183  Sum_probs=204.6

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA  202 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~  202 (432)
                      .+...|..+.|+-+|++.++++.|     .+|++|+...|.+++++. |...|..++.+.|...+++   |..+.+||+.
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            688899999999999999999999     999999999999999999 9999999999999888885   7899999999


Q ss_pred             CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC---CceeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (432)
                      +|+.++.+.+|...++.+.|+.+..  +++ +|+.|..+++||-++   .+++.+......|.++..  .+..+++|+.|
T Consensus        90 TGkv~Rr~rgH~aqVNtV~fNeesS--Vv~-SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~D  164 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVNTVRFNEESS--VVA-SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVD  164 (307)
T ss_pred             cCeeeeecccccceeeEEEecCcce--EEE-eccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccC
Confidence            9999999999999999999988765  334 577999999999998   456667777888999988  46689999999


Q ss_pred             CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeE
Q 014007          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI  359 (432)
Q Consensus       280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (432)
                      |+ +|.||++.|+...-+.+    .+|++++|++|++..+.++.|+++++.|-.+++.++.                   
T Consensus       165 Gt-vRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s-------------------  220 (307)
T KOG0316|consen  165 GT-VRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS-------------------  220 (307)
T ss_pred             Cc-EEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHH-------------------
Confidence            99 99999999988766653    5799999999999999999999999999999986543                   


Q ss_pred             eecccceeecceeeEEEEecCCC--ceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          360 KGVLPKYFSSEWSVAQFRLVEGS--PYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                      .++|.+.  -..++++....++++|++||.|++|++-.
T Consensus       221 ----------------YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  221 ----------------YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             ----------------hcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence                            3444432  23466777788999999999999999844

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=4.1e-31  Score=224.16  Aligned_cols=283  Identities=14%  Similarity=0.166  Sum_probs=233.8

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ...+..|.+.|..+.|-++...|++|+ |..|++|++...+......+. +....+..+.|.+++..+++.+.|     +
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d-----~  241 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASND-----K  241 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCC-----C
Confidence            467889999999999999988888887 666999999887766667776 778899999999999999999998     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      .+++|++...+...++. |.+.|+++.|......++   .|.+|++||+....+.+++-... .+..++..+     ...
T Consensus       242 ~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-~cnDI~~~~-----~~~  315 (459)
T KOG0288|consen  242 NLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS-QCNDIVCSI-----SDV  315 (459)
T ss_pred             ceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc-cccceEecc-----eee
Confidence            99999999999999999 999999999988766555   38899999999988877764322 233444442     223


Q ss_pred             eecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC--cCceEEEE
Q 014007          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD--RAEIYSLA  310 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~--~~~i~~~~  310 (432)
                      .+|-.|+.|++||.++........-.+.|+++..+++|..|.+++.|.+ +.+.|+++.+....+.....  ....+.+.
T Consensus       316 ~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvv  394 (459)
T KOG0288|consen  316 ISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVV  394 (459)
T ss_pred             eecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeE
Confidence            3577899999999998665554445569999999999999999999999 99999999998888875321  23588999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC--CCceEEEE
Q 014007          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE--GSPYIVAF  388 (432)
Q Consensus       311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~  388 (432)
                      |||++.|+++|+.||.|+||++.+++..+.                                   ++...  ..|++++|
T Consensus       395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~-----------------------------------l~~s~s~~aI~s~~W  439 (459)
T KOG0288|consen  395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKV-----------------------------------LSLSTSNAAITSLSW  439 (459)
T ss_pred             ECCCCceeeeccCCCcEEEEEccCceEEEE-----------------------------------eccCCCCcceEEEEE
Confidence            999999999999999999999999984321                                   22222  25999999


Q ss_pred             ccCCCEEEEEecCCeEEEEE
Q 014007          389 GHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       389 s~~~~~l~~~~~dg~v~iw~  408 (432)
                      +|.|..|++++.++.+.+|.
T Consensus       440 ~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  440 NPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             cCCCchhhcccCCcceEecC
Confidence            99999999999999999983

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=1.8e-30  Score=216.44  Aligned_cols=241  Identities=14%  Similarity=0.178  Sum_probs=214.7

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~  197 (432)
                      +.+. +|...|.++++.|...+|++|+.|     ++|+|||+.+|+...++. |...|..+++++-..|+++   |+.|+
T Consensus       145 rVi~-gHlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  145 RVIS-GHLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             hhhh-hccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            3444 899999999999999999999999     999999999999999999 9999999999999988884   88999


Q ss_pred             EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEE
Q 014007          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATS  276 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~  276 (432)
                      .||++..+.++.+.+|-..|.++++.|.-+.  +++ |+.|..+++||+++ ..+..+.+|..+|..+.+.|-...+++|
T Consensus       219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldv--l~t-~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDV--LVT-GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             EEechhhhhHHHhccccceeEEEecccccee--EEe-cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence            9999999999999999999999999997663  343 55899999999999 4677889999999999999977789999


Q ss_pred             cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007          277 STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL  356 (432)
Q Consensus       277 ~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (432)
                      +.|++ |++||++.|+...++..  |+..+.+++.+|....+|+++.|+ |+-|++..+..                   
T Consensus       296 S~D~t-vrlWDl~agkt~~tlt~--hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f-------------------  352 (460)
T KOG0285|consen  296 SHDST-VRLWDLRAGKTMITLTH--HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF-------------------  352 (460)
T ss_pred             cCCce-EEEeeeccCceeEeeec--ccceeeEEecCCchhhhhccCCcc-ceeccCCccch-------------------
Confidence            99999 99999999999888874  678999999999999999998775 89999998873                   


Q ss_pred             eeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                      +..+.+|...|++++...| ..+++|+..|.+..|++..
T Consensus       353 ----------------~~nlsgh~~iintl~~nsD-~v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  353 ----------------LQNLSGHNAIINTLSVNSD-GVLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             ----------------hhccccccceeeeeeeccC-ceEEEcCCceEEEEEecCc
Confidence                            2346788899999998877 4677899999999999855

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.8e-30  Score=236.02  Aligned_cols=286  Identities=14%  Similarity=0.195  Sum_probs=211.2

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe----------------
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI----------------  141 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------  141 (432)
                      .....|.++|.++.||+||+|||+|+.++ |+||.+-..+.. ....   .......+....++                
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~-~~~~---~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM-RVAE---GDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh-cccc---cccchhhhhhhhccccCccccccccccccc
Confidence            34448999999999999999999999666 999998542221 0111   00000000001000                


Q ss_pred             EEEecCCCCCCCCCCeEEEEeCC----CCceeEEee-cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeecc
Q 014007          142 LALVGGGPDPQYPLNKVMIWDDH----QSRCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIA  214 (432)
Q Consensus       142 ~~~~s~~~d~~~~~~~v~iwd~~----~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~  214 (432)
                      ...-.+...     ..+ +.+..    ..++++.+. |.+.|.+|.|+.++.+|.+  |.+|++|++...+++..| .|.
T Consensus       337 s~~~~~~~s-----~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~Hn  409 (712)
T KOG0283|consen  337 SSSRKGSQS-----PCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHN  409 (712)
T ss_pred             cccccccCC-----ccc-cCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecC
Confidence            111111111     122 22211    235677777 9999999999999988884  999999999999999998 489


Q ss_pred             CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceE
Q 014007          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (432)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~  294 (432)
                      +-|++++|+|..+..++  +|+-||.|+||++...++.....-..-|++++|.|||++.++|+.+|. +++|+....+..
T Consensus       410 dfVTcVaFnPvDDryFi--SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~  486 (712)
T KOG0283|consen  410 DFVTCVAFNPVDDRYFI--SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLV  486 (712)
T ss_pred             CeeEEEEecccCCCcEe--ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEE
Confidence            99999999998887655  578999999999999988888777799999999999999999999999 999999988877


Q ss_pred             EEEEeCCC------cCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccccee
Q 014007          295 QEVRRGAD------RAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF  367 (432)
Q Consensus       295 ~~~~~~~~------~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (432)
                      ..+....+      ...|+.+.|.|.. ..+++.+.|..|+|||.++...+..                           
T Consensus       487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K---------------------------  539 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK---------------------------  539 (712)
T ss_pred             EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh---------------------------
Confidence            66554322      1379999999743 3577888999999999977664322                           


Q ss_pred             ecceeeEEEEecC--CCceEEEEccCCCEEEEEecCCeEEEEEecCCC
Q 014007          368 SSEWSVAQFRLVE--GSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVN  413 (432)
Q Consensus       368 ~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~  413 (432)
                              ++++.  +.=....|+.||++|+++++|..||||+++...
T Consensus       540 --------fKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  540 --------FKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             --------hcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence                    33322  122356899999999999999999999986644

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-30  Score=230.89  Aligned_cols=239  Identities=13%  Similarity=0.160  Sum_probs=216.1

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA  202 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~  202 (432)
                      .+...|-++.++|....++++-.+     |.|.|||.++...++.+. ...+|++..|-....+++.   |..|++|+..
T Consensus        11 ~rSdRVKsVd~HPtePw~la~Lyn-----G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPWILAALYN-----GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             ccCCceeeeecCCCCceEEEeeec-----CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            477889999999999999998888     999999999999999999 7889999999988777773   7799999999


Q ss_pred             CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcC-CCCEEEEEcCC
Q 014007          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQ-DGQLLATSSTK  279 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d  279 (432)
                      +++.++.+..|.+-+++++++|....++   +++.|-.|++||.+.  ...+++.+|...|.+++|.| |.+.+|+++.|
T Consensus        86 t~ekV~~FeAH~DyIR~iavHPt~P~vL---tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD  162 (794)
T KOG0276|consen   86 TGEKVKTFEAHSDYIRSIAVHPTLPYVL---TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD  162 (794)
T ss_pred             cceeeEEeeccccceeeeeecCCCCeEE---ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence            9999999999999999999999877543   345899999999998  56788999999999999999 67899999999


Q ss_pred             CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC--CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCce
Q 014007          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA--QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLS  357 (432)
Q Consensus       280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (432)
                      ++ |+||.+.+..+..++.+  |...|+++.|-+.|  .+|++|++|.+|+|||.++..+                    
T Consensus       163 rT-VKVWslgs~~~nfTl~g--HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C--------------------  219 (794)
T KOG0276|consen  163 RT-VKVWSLGSPHPNFTLEG--HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC--------------------  219 (794)
T ss_pred             cc-EEEEEcCCCCCceeeec--cccCcceEEeccCCCcceEEecCCCceEEEeecchHHH--------------------
Confidence            99 99999999999999995  77999999998744  6999999999999999999875                    


Q ss_pred             eEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          358 FIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                     +.++.+|...|+.+.|+|.=..+++|++||+|+||+-..
T Consensus       220 ---------------V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  220 ---------------VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             ---------------HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence                           446789999999999999999999999999999998544

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=9e-29  Score=199.02  Aligned_cols=236  Identities=18%  Similarity=0.240  Sum_probs=201.1

Q ss_pred             eecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCC---ceeEEee--cCCceEEEEEecCccEEEe---
Q 014007          122 RDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS--FRSEVRSVKLRRDRIIVVL---  192 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~---~~~~~~~--~~~~v~~~~~~~~~~~~~~---  192 (432)
                      +.++ +|...+..++|+|. |..|++++.|     +.|++|+...+   .+...+.  |+..|++++|+|.|+++++   
T Consensus         8 ~~~~-gh~~r~W~~awhp~~g~ilAscg~D-----k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen    8 QKLS-GHKDRVWSVAWHPGKGVILASCGTD-----KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             Eeec-CCCCcEEEEEeccCCceEEEeecCC-----ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence            4554 78889999999998 8999999999     99999998743   4555554  8999999999999999993   


Q ss_pred             CCeEEEEEcCC--CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC----CceeeeeccCCceeEEEE
Q 014007          193 EQKIFVYNFAD--LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFAL  266 (432)
Q Consensus       193 d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~  266 (432)
                      |.++.||.-..  .+++..+++|.+.|.+++|+.+|+.+  |++ +.|..|-||.+..    .....++.|...|..+.|
T Consensus        82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~L--ATC-SRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W  158 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYL--ATC-SRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW  158 (312)
T ss_pred             cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEE--EEe-eCCCeEEEEEecCCCcEEEEeeeccccccccEEEE
Confidence            99999998554  47889999999999999999999855  433 3899999999985    345678899999999999


Q ss_pred             cCCCCEEEEEcCCCceEEEEECC---CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCC
Q 014007          267 TQDGQLLATSSTKGTLVRIFNTL---DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEP  343 (432)
Q Consensus       267 sp~~~~l~~~~~dg~~i~vwd~~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  343 (432)
                      +|...+|++++.|.+ |++|+-.   +..+++++.+  |...|.+++|++.|..|+++++|++++||...+.-       
T Consensus       159 HPt~dlL~S~SYDnT-Ik~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~-------  228 (312)
T KOG0645|consen  159 HPTEDLLFSCSYDNT-IKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL-------  228 (312)
T ss_pred             cCCcceeEEeccCCe-EEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCceEEEecCCcceEeeeeccCc-------
Confidence            999999999999999 9999866   3478888886  55799999999999999999999999999876432       


Q ss_pred             CCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          344 RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                                                      -..|...+..++|.  ...|++++.|+.|++|.-.
T Consensus       229 --------------------------------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  229 --------------------------------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             --------------------------------chhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence                                            12356678899997  5789999999999999865

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.8e-30  Score=238.25  Aligned_cols=256  Identities=14%  Similarity=0.183  Sum_probs=223.3

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA  202 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~  202 (432)
                      .....+-.++|+|....++++-..     |.|++||.+-+.++..|. |.++|.+++|+|++.++++   |-.|++|+..
T Consensus         7 skSsRvKglsFHP~rPwILtslHs-----G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHS-----GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecC-----ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence            456788899999999999998887     999999999999999998 9999999999999999986   4589999999


Q ss_pred             CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCc
Q 014007          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGT  281 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~  281 (432)
                      +.+++.++.+|.+-|+.+.|++.-..++-   .+.|.+|+||+..+ +.+..+.+|...|.|.+|+|....++++|.|.+
T Consensus        82 ~rrclftL~GHlDYVRt~~FHheyPWIlS---ASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT  158 (1202)
T KOG0292|consen   82 TRRCLFTLLGHLDYVRTVFFHHEYPWILS---ASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT  158 (1202)
T ss_pred             cceehhhhccccceeEEeeccCCCceEEE---ccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence            99999999999999999999998776543   34899999999998 567789999999999999999999999999999


Q ss_pred             eEEEEECCCC---------------------------ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          282 LVRIFNTLDG---------------------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       282 ~i~vwd~~~~---------------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                       |||||+...                           ..+.++-..+|...|+-++|+|.-.+|++|++|+.|++|.+..
T Consensus       159 -VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  159 -VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             -EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence             999998521                           1111222224778999999999999999999999999999987


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCC
Q 014007          335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG  414 (432)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~  414 (432)
                      .+                                 .|++-+.++|.+.|+++-|+|..+++++.|+|++|++|+++..++
T Consensus       238 tK---------------------------------aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~  284 (1202)
T KOG0292|consen  238 TK---------------------------------AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS  284 (1202)
T ss_pred             cc---------------------------------ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence            54                                 577888999999999999999999999999999999999988887


Q ss_pred             CcceEeeecc
Q 014007          415 GEMTQLEYNN  424 (432)
Q Consensus       415 ~~~~~~~~~~  424 (432)
                      -++.+-+..+
T Consensus       285 v~tfrrendR  294 (1202)
T KOG0292|consen  285 VQTFRRENDR  294 (1202)
T ss_pred             eeeeeccCCe
Confidence            7776555444

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=3.9e-29  Score=210.05  Aligned_cols=285  Identities=13%  Similarity=0.178  Sum_probs=226.3

Q ss_pred             CCCCcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC---eEEEecCCC
Q 014007           74 PSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGP  149 (432)
Q Consensus        74 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~  149 (432)
                      .++.+.....|.+.|.++...  ++.+.+|+ |+.++||+... +..  +.+. +|...+.++++...   ...+++++.
T Consensus        94 ~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~--~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~  167 (423)
T KOG0313|consen   94 TAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSI--KTIV-GHTGPIKSVAWVIKNSSSCLFVSASM  167 (423)
T ss_pred             CCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceE--EEEe-cCCcceeeeEEEecCCccceEEEecC
Confidence            344455667799999999988  66777777 77799999754 333  4444 78888888776433   335899999


Q ss_pred             CCCCCCCeEEEEeCCCCcee----EEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC------------------
Q 014007          150 DPQYPLNKVMIWDDHQSRCI----GELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD------------------  203 (432)
Q Consensus       150 d~~~~~~~v~iwd~~~~~~~----~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~------------------  203 (432)
                      |     .++++|-++.++.+    .... |...|.+++..+++..+++   |.+|.||+..+                  
T Consensus       168 D-----qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~  242 (423)
T KOG0313|consen  168 D-----QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK  242 (423)
T ss_pred             C-----ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence            9     99999998877533    2222 8999999999999999884   99999999321                  


Q ss_pred             -------CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEE
Q 014007          204 -------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS  276 (432)
Q Consensus       204 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~  276 (432)
                             +.++..+.+|..+|..+.|++.+ .   +++++.|.+|+.||+.++....-......+.|+..+|..++|++|
T Consensus       243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~-v---~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~g  318 (423)
T KOG0313|consen  243 REKEGGTRTPLVTLEGHTEPVSSVVWSDAT-V---IYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASG  318 (423)
T ss_pred             hhhcccccCceEEecccccceeeEEEcCCC-c---eEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeec
Confidence                   12456778899999999999843 2   334569999999999997766655667889999999999999999


Q ss_pred             cCCCceEEEEECCCCc---eEEEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007          277 STKGTLVRIFNTLDGT---LLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (432)
Q Consensus       277 ~~dg~~i~vwd~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (432)
                      +.|.. |++||.+++.   ..+.|.+  |...|.++.|+|... .|++++.||++++||+++.+..              
T Consensus       319 ssdr~-irl~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p--------------  381 (423)
T KOG0313|consen  319 SSDRH-IRLWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP--------------  381 (423)
T ss_pred             CCCCc-eeecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc--------------
Confidence            99999 9999998763   2344543  778999999999655 6788999999999999987621              


Q ss_pred             CCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                          +..+.+|.+.|.++.|+ ++..|++||.|.+++|+.-.+
T Consensus       382 --------------------lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  382 --------------------LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             --------------------ceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence                                56788899999999997 567999999999999987543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.2e-28  Score=223.81  Aligned_cols=283  Identities=20%  Similarity=0.221  Sum_probs=225.9

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ..-...+|..+|+++.|...|.+|++|+.++ |.+||+-.....  ..+. +|...|+.+.|..+..++++.+.|     
T Consensus        99 ~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl--~rL~-GHkd~iT~~~F~~~~~~lvS~sKD-----  170 (888)
T KOG0306|consen   99 ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL--FRLR-GHKDSITQALFLNGDSFLVSVSKD-----  170 (888)
T ss_pred             eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceee--EEee-cchHHHhHHhccCCCeEEEEeccC-----
Confidence            3456788999999999999999999999555 999998655544  4455 789999999998888888888888     


Q ss_pred             CeEEEEeCCCCceeEEee--------------------------------------------------------------
Q 014007          156 NKVMIWDDHQSRCIGELS--------------------------------------------------------------  173 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~--------------------------------------------------------------  173 (432)
                      +.|++||+++..+..+.-                                                              
T Consensus       171 s~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l  250 (888)
T KOG0306|consen  171 SMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINL  250 (888)
T ss_pred             ceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEE
Confidence            888888886654433111                                                              


Q ss_pred             --------------------------------------------------------------------------------
Q 014007          174 --------------------------------------------------------------------------------  173 (432)
Q Consensus       174 --------------------------------------------------------------------------------  173 (432)
                                                                                                      
T Consensus       251 ~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~  330 (888)
T KOG0306|consen  251 VTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTP  330 (888)
T ss_pred             eecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEe
Confidence                                                                                            


Q ss_pred             -----------------------------------------cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEE
Q 014007          174 -----------------------------------------FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQI  210 (432)
Q Consensus       174 -----------------------------------------~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~  210 (432)
                                                               |...|.+++++.+...+++  ++.|++|+..+.++++++
T Consensus       331 ~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi  410 (888)
T KOG0306|consen  331 SGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI  410 (888)
T ss_pred             cCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe
Confidence                                                     3444666666666666664  578888888888888887


Q ss_pred             eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (432)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~  289 (432)
                      ...  -+-+..|.|.++++++   |...|.+.+||+.+. .+.++.+|++.|.+++.+||++.+++|+.|.+ |++||..
T Consensus       411 ~~~--y~l~~~Fvpgd~~Iv~---G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt-VkfWdf~  484 (888)
T KOG0306|consen  411 TCG--YILASKFVPGDRYIVL---GTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT-VKFWDFK  484 (888)
T ss_pred             ccc--cEEEEEecCCCceEEE---eccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE-EEEEeEE
Confidence            543  5556778887776554   448899999999884 45567799999999999999999999999999 9999974


Q ss_pred             C-----CceE--------EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007          290 D-----GTLL--------QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL  356 (432)
Q Consensus       290 ~-----~~~~--------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (432)
                      -     +...        +++.   -+..|.++.+||||++||++=-|++|+||-+++.+-                   
T Consensus       485 l~~~~~gt~~k~lsl~~~rtLe---l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF-------------------  542 (888)
T KOG0306|consen  485 LVVSVPGTQKKVLSLKHTRTLE---LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF-------------------  542 (888)
T ss_pred             EEeccCcccceeeeeccceEEe---ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee-------------------
Confidence            1     1111        2222   346899999999999999999999999999999771                   


Q ss_pred             eeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                      +-++-+|.=+|.++..|||++.+++|+.|.+|+||-+|.
T Consensus       543 ----------------flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF  581 (888)
T KOG0306|consen  543 ----------------FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF  581 (888)
T ss_pred             ----------------eeeecccccceeEEeccCCcCeEEeccCCCceEEecccc
Confidence                            346789999999999999999999999999999999977

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.6e-29  Score=222.54  Aligned_cols=274  Identities=15%  Similarity=0.129  Sum_probs=228.9

Q ss_pred             EEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007           89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (432)
Q Consensus        89 ~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~  168 (432)
                      +-+.|+ ....||+|....|.+|+..++.......+   +...|+++.|+++|.+|+.|..+     |.|.|||..+.+.
T Consensus       181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~---~~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~  251 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF---GEELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKK  251 (484)
T ss_pred             hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEec---CCCceEEEEECCCCCEEEEeecC-----CeEEEEehhhccc
Confidence            446777 45689999988999999887775433333   37899999999999999999999     9999999999888


Q ss_pred             eEEee--cCCceEEEEEecCccEEEe-CCeEEEEEcCCCeeeEE-EeeccCCcceEEEecCCCcEEEEeecCCCCcEEEE
Q 014007          169 IGELS--FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (432)
Q Consensus       169 ~~~~~--~~~~v~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~  244 (432)
                      +..+.  |...|.+++|+........ ++.|..+|++..+.... +.+|...|..+.|++++..  +++ |+.|+.+.||
T Consensus       252 ~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--lAS-GgnDN~~~Iw  328 (484)
T KOG0305|consen  252 TRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--LAS-GGNDNVVFIW  328 (484)
T ss_pred             cccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe--ecc-CCCccceEec
Confidence            88877  7899999999833222222 89999999998765544 7889999999999999884  454 6699999999


Q ss_pred             EccC-CceeeeeccCCceeEEEEcC-CCCEEEEEc--CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEE
Q 014007          245 HYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV  320 (432)
Q Consensus       245 d~~~-~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  320 (432)
                      |... .....+..|...|.+++|+| ...+||+|+  .|+. |++||..+++.+..+..   ...|.+|.|++..+-|++
T Consensus       329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~s  404 (484)
T KOG0305|consen  329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLS  404 (484)
T ss_pred             cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEE
Confidence            9965 56678889999999999999 567888865  5888 99999999999999884   478999999999876665


Q ss_pred             E--eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE
Q 014007          321 S--SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL  398 (432)
Q Consensus       321 ~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  398 (432)
                      +  ..++.|.||+..+.+.                                   ++.+.+|...|..++++|||..+++|
T Consensus       405 thG~s~n~i~lw~~ps~~~-----------------------------------~~~l~gH~~RVl~la~SPdg~~i~t~  449 (484)
T KOG0305|consen  405 THGYSENQITLWKYPSMKL-----------------------------------VAELLGHTSRVLYLALSPDGETIVTG  449 (484)
T ss_pred             ecCCCCCcEEEEeccccce-----------------------------------eeeecCCcceeEEEEECCCCCEEEEe
Confidence            4  3678999999988663                                   45688999999999999999999999


Q ss_pred             ecCCeEEEEEecCCC
Q 014007          399 GMDGSFYRCQFDPVN  413 (432)
Q Consensus       399 ~~dg~v~iw~~~~~~  413 (432)
                      +.|.++++|++-...
T Consensus       450 a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  450 AADETLRFWNLFDER  464 (484)
T ss_pred             cccCcEEeccccCCC
Confidence            999999999986643

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=7e-31  Score=218.16  Aligned_cols=227  Identities=15%  Similarity=0.281  Sum_probs=193.5

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCC
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD  203 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~  203 (432)
                      ....|.++.+..  ..+++|..|     ++|+|||..+..+++.+. |.+.|.|+.|...  +++   +|.+|++||.++
T Consensus       196 ~skgVYClQYDD--~kiVSGlrD-----nTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  196 NSKGVYCLQYDD--EKIVSGLRD-----NTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             cCCceEEEEecc--hhhhccccc-----CceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEecCCCceEEEEeccC
Confidence            445667776654  478899999     999999999999998888 9999999998544  555   489999999999


Q ss_pred             CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007          204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSSTK  279 (432)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (432)
                      ++++.++-.|...+-.+.|+..    ++++ .+.|..+.+||+....    .+.+.+|...|+.+.|  +.+++++++.|
T Consensus       267 ge~l~tlihHceaVLhlrf~ng----~mvt-cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgD  339 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFSNG----YMVT-CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD  339 (499)
T ss_pred             CchhhHHhhhcceeEEEEEeCC----EEEE-ecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCC
Confidence            9999999889888888887754    3443 3589999999998843    3457799999999999  55699999999


Q ss_pred             CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeE
Q 014007          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI  359 (432)
Q Consensus       280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (432)
                      .+ |++|++.++++++++.+  |...|.++.+  .|+++++|+.|++|++||+..+.++                     
T Consensus       340 RT-ikvW~~st~efvRtl~g--HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL---------------------  393 (499)
T KOG0281|consen  340 RT-IKVWSTSTCEFVRTLNG--HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL---------------------  393 (499)
T ss_pred             ce-EEEEeccceeeehhhhc--ccccceehhc--cCeEEEecCCCceEEEEeccccHHH---------------------
Confidence            99 99999999999999986  6688988887  7899999999999999999999853                     


Q ss_pred             eecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          360 KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                                    ..+.+|++-|.++.|  |.+.+++|+.||+|++|++...
T Consensus       394 --------------RvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  394 --------------RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             --------------HHHhchHHhhhheee--cCceeeeccccceEEEEecccc
Confidence                          357789999999999  6789999999999999999663

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=6.9e-30  Score=220.94  Aligned_cols=247  Identities=17%  Similarity=0.241  Sum_probs=208.5

Q ss_pred             eecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCC-CceeEEee-cCCceEEEEEecCccEEEe---CCe
Q 014007          122 RDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQK  195 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~  195 (432)
                      ..+. +|...|.++.|.| .+.++++++.|     +.|+||++.. +++++++. |..+|.+++|+++|..+.+   |+.
T Consensus       208 ~~~~-gH~kgvsai~~fp~~~hLlLS~gmD-----~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  208 HNLS-GHTKGVSAIQWFPKKGHLLLSGGMD-----GLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             eecc-CCccccchhhhccceeeEEEecCCC-----ceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence            4454 8999999999998 78899999999     9999999877 88999999 9999999999999987773   999


Q ss_pred             EEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEE
Q 014007          196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLA  274 (432)
Q Consensus       196 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~  274 (432)
                      |++||+++|+++..+.. .....++.|.|++.+++++  |+.|+.|+.||++++.+ +.+..|-+.|..+.|-++|++++
T Consensus       282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~--G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFi  358 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLV--GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFI  358 (503)
T ss_pred             eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEE--ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEe
Confidence            99999999999999864 4566799999999777664  56899999999999654 56778999999999999999999


Q ss_pred             EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (432)
Q Consensus       275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (432)
                      +.+.|++ ++||+.+..-.+..+... +.-...++..+|++.++++-+.|+.|.+|.+...-.+..              
T Consensus       359 ssSDdks-~riWe~~~~v~ik~i~~~-~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk--------------  422 (503)
T KOG0282|consen  359 SSSDDKS-VRIWENRIPVPIKNIADP-EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK--------------  422 (503)
T ss_pred             eeccCcc-EEEEEcCCCccchhhcch-hhccCcceecCCCCCeehhhccCceEEEEecccccccCH--------------
Confidence            9999999 999999888766544432 334678899999999999999999999999765432110              


Q ss_pred             CceeEeecccceeecceeeEEEEecC--CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          355 SLSFIKGVLPKYFSSEWSVAQFRLVE--GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                        -..+++|.  |.-..+.|||||.+|++|+.||.+++|++.+
T Consensus       423 ------------------kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  423 ------------------KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT  463 (503)
T ss_pred             ------------------hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence                              11345554  5567899999999999999999999999977

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.6e-30  Score=217.11  Aligned_cols=284  Identities=10%  Similarity=0.095  Sum_probs=229.1

Q ss_pred             ccCCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ..+.+|.++|.|++=+|.. ..+++|+ |+.|+|||+....+.  ..+. .|.+.|..+++..  ..+++++.|     .
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--~~f~-AH~G~V~Gi~v~~--~~~~tvgdD-----K  129 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--RTFK-AHEGLVRGICVTQ--TSFFTVGDD-----K  129 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--heee-cccCceeeEEecc--cceEEecCC-----c
Confidence            3458999999999999987 6788888 666999999877665  5665 7899999999887  667777777     9


Q ss_pred             eEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe-CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      +|+.|-+.- ..+.++-..+.+.++.-+..+..+++ ...|.|||.....+++.+.-..+.+.++.|+|....+ |++++
T Consensus       130 tvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI-Las~~  207 (433)
T KOG0268|consen  130 TVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI-LASCA  207 (433)
T ss_pred             ceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchh-eeeec
Confidence            999999654 57777777888888888777777776 4589999999889999998888889999999987665 45444


Q ss_pred             CCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCC
Q 014007          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSN  314 (432)
Q Consensus       236 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~  314 (432)
                       .|+.|.+||++......-......-+.|+|+|++-.+++|++|.. ++.||++.. +.+..+.+  |.+.|.++.|||.
T Consensus       208 -sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d--hvsAV~dVdfspt  283 (433)
T KOG0268|consen  208 -SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPT  283 (433)
T ss_pred             -cCCceEEEecccCCccceeeeeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc--cceeEEEeccCCC
Confidence             899999999998554333333455678999998888999999999 999999875 44555654  6689999999999


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCE
Q 014007          315 AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT  394 (432)
Q Consensus       315 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  394 (432)
                      |+-+++|+.|.+|+||.++.+......                         ...         --..|.+|.||.|.++
T Consensus       284 G~EfvsgsyDksIRIf~~~~~~SRdiY-------------------------htk---------RMq~V~~Vk~S~Dsky  329 (433)
T KOG0268|consen  284 GQEFVSGSYDKSIRIFPVNHGHSRDIY-------------------------HTK---------RMQHVFCVKYSMDSKY  329 (433)
T ss_pred             cchhccccccceEEEeecCCCcchhhh-------------------------hHh---------hhheeeEEEEeccccE
Confidence            999999999999999999887622110                         000         0124899999999999


Q ss_pred             EEEEecCCeEEEEEecCC
Q 014007          395 VVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       395 l~~~~~dg~v~iw~~~~~  412 (432)
                      +++|+.||.|++|.-...
T Consensus       330 i~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  330 IISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             EEecCCCcceeeeecchh
Confidence            999999999999997664

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.5e-28  Score=214.15  Aligned_cols=287  Identities=14%  Similarity=0.174  Sum_probs=212.6

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEE--EeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIF--RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      -.+..|...|.++++.|.|..|++|+ |..|++||+.......  .+.+.......|.++.|++.+..++..+..     
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~-----  235 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS-----  235 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC-----
Confidence            34667889999999999999999999 8889999997544322  233433455667788888766544433333     


Q ss_pred             CeEEEEeCCCCceeEEe-------------e-cCCceEEEEEecCcc--EEE--eCCeEEEEEcCCCe-eeEEEee----
Q 014007          156 NKVMIWDDHQSRCIGEL-------------S-FRSEVRSVKLRRDRI--IVV--LEQKIFVYNFADLK-LLHQIET----  212 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~-------------~-~~~~v~~~~~~~~~~--~~~--~d~~i~i~d~~~~~-~~~~~~~----  212 (432)
                      ...+|+| +.|..+.++             + |...+++.+|+|+.+  ++.  .||+++|||+...+ .++.++.    
T Consensus       236 aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  236 AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            6789998 444322221             2 667789999999754  443  39999999998743 3333322    


Q ss_pred             -ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeeccCC--ceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007          213 -IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVRI  285 (432)
Q Consensus       213 -~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~~i~v  285 (432)
                       ..-+++.|+|+++++.++   +|..||.|.+|+..+..    ...-.+|..  .|+||.||+||++|++-+.|++ +++
T Consensus       315 g~Rv~~tsC~~nrdg~~iA---agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKv  390 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIA---AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKV  390 (641)
T ss_pred             CcccCceeeecCCCcchhh---hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eee
Confidence             233567899999998643   35589999999987632    234457877  8999999999999999999999 999


Q ss_pred             EECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeC------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007          286 FNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF  358 (432)
Q Consensus       286 wd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (432)
                      ||++.. +++....+.....+-+.++|||+.++|++|+.      .|.+.+||..+...                     
T Consensus       391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~---------------------  449 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT---------------------  449 (641)
T ss_pred             eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee---------------------
Confidence            999975 45655555444456789999999999999863      56899999988763                     


Q ss_pred             EeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                    ++.+......|..+.|+|.=+.|+.|+.||.+++| +|+
T Consensus       450 --------------v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy-Ydp  487 (641)
T KOG0772|consen  450 --------------VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY-YDP  487 (641)
T ss_pred             --------------EEEecCCCceEEEEeecchhhheeeecCCCceEEE-ECc
Confidence                          23344445668899999999999999999999997 355

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=4.7e-28  Score=206.89  Aligned_cols=279  Identities=13%  Similarity=0.198  Sum_probs=232.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      ...|+++...|....+.+|+ |..+.++|....+..  ..++ ||...|..+.++++...+++++.|     ..|++|..
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l--~~~~-Gh~kki~~v~~~~~~~~v~~aSad-----~~i~vws~  290 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL--ATLK-GHTKKITSVKFHKDLDTVITASAD-----EIIRVWSV  290 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh--hhcc-CcceEEEEEEeccchhheeecCCc-----ceEEeecc
Confidence            46788999998867788888 557999998777655  6676 899999999999999999999999     99999998


Q ss_pred             CCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc--CCcceEEEecCCCcEEEEeecCC
Q 014007          164 HQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQ  237 (432)
Q Consensus       164 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~  237 (432)
                      .......... |.++|+.+..+|.|.|+++   |++..+.|++++..+.......  -.+++.+|+|||-  +++ .|..
T Consensus       291 ~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifg-tgt~  367 (506)
T KOG0289|consen  291 PLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFG-TGTP  367 (506)
T ss_pred             ccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEe-ccCC
Confidence            7776655555 9999999999999999984   8899999999998887765432  2467889999984  444 5779


Q ss_pred             CCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC
Q 014007          238 KGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (432)
Q Consensus       238 d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  316 (432)
                      |+.|+|||+.+ .....|.+|.++|..++|+.+|.+|++++.|+. |++||++..+...++... ....+.++.|.+.|.
T Consensus       368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt  445 (506)
T KOG0289|consen  368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGT  445 (506)
T ss_pred             CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecc-ccccceeEEEcCCCC
Confidence            99999999998 456678999999999999999999999999999 999999999988888854 334799999999999


Q ss_pred             EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEE
Q 014007          317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV  396 (432)
Q Consensus       317 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  396 (432)
                      +|+.++.|=.|++++-.+..-                                 .++..+..|.+..+.+.|....++++
T Consensus       446 ~L~~~g~~l~Vy~~~k~~k~W---------------------------------~~~~~~~~~sg~st~v~Fg~~aq~l~  492 (506)
T KOG0289|consen  446 YLGIAGSDLQVYICKKKTKSW---------------------------------TEIKELADHSGLSTGVRFGEHAQYLA  492 (506)
T ss_pred             eEEeecceeEEEEEecccccc---------------------------------eeeehhhhcccccceeeecccceEEe
Confidence            999997776666665444320                                 11445667778899999999999999


Q ss_pred             EEecCCeEEEEEe
Q 014007          397 ILGMDGSFYRCQF  409 (432)
Q Consensus       397 ~~~~dg~v~iw~~  409 (432)
                      +++.|..++++.+
T Consensus       493 s~smd~~l~~~a~  505 (506)
T KOG0289|consen  493 STSMDAILRLYAL  505 (506)
T ss_pred             eccchhheEEeec
Confidence            9999999998765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.9e-28  Score=197.56  Aligned_cols=288  Identities=18%  Similarity=0.183  Sum_probs=210.0

Q ss_pred             CCCcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecc-cCcceeEEEEeeeCCeEEEe-cCCCCC
Q 014007           75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALV-GGGPDP  151 (432)
Q Consensus        75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~-s~~~d~  151 (432)
                      +.....+.+|.+.|++++|+.||++||+++ |+.|+||++..+.....+.+. .-.-...+.+.|.||-..++ +.... 
T Consensus        76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g-  154 (420)
T KOG2096|consen   76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG-  154 (420)
T ss_pred             chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC-
Confidence            344578899999999999999999999998 555999999765543222221 01122446677888865443 33333 


Q ss_pred             CCCCCeEEEEeCCCCc---e------eE--Eee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccC
Q 014007          152 QYPLNKVMIWDDHQSR---C------IG--ELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN  215 (432)
Q Consensus       152 ~~~~~~v~iwd~~~~~---~------~~--~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~  215 (432)
                          .++++|-....+   .      +.  .+.  |.-.+..+-+..++.++++   |..|.+|+++ |+.+..+.....
T Consensus       155 ----~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~  229 (420)
T KOG2096|consen  155 ----NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS  229 (420)
T ss_pred             ----CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc
Confidence                689999764321   1      11  122  5566777777788888884   8899999997 899999887777


Q ss_pred             CcceEEEecCCCcEEEEeecCCCCcEEEEEccC---------CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEE
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vw  286 (432)
                      .....+++|+|+.+  +++| .-..|++|..--         .++..+.+|...|..++|+++...+++.+.||+ ++||
T Consensus       230 ~n~~aavSP~GRFi--a~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriw  305 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFI--AVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIW  305 (420)
T ss_pred             cccceeeCCCCcEE--EEec-CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEe
Confidence            77889999999844  4445 678899998642         234567899999999999999999999999999 9999


Q ss_pred             ECCC-------CceEEEEEeC--CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCce
Q 014007          287 NTLD-------GTLLQEVRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLS  357 (432)
Q Consensus       287 d~~~-------~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (432)
                      |+.-       .+.+++....  ...+....++.+|.|+.||... ...+++|..++++.....                
T Consensus       306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~----------------  368 (420)
T KOG2096|consen  306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL----------------  368 (420)
T ss_pred             eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH----------------
Confidence            9742       2333333211  1123455899999999987764 557999999998744322                


Q ss_pred             eEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          358 FIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                                        -+.|++.|.+++|+++|+++++++ |..++++.
T Consensus       369 ------------------e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  369 ------------------EDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             ------------------HHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence                              235888999999999999999887 77888865

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=6.6e-28  Score=228.15  Aligned_cols=290  Identities=18%  Similarity=0.201  Sum_probs=229.2

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc---CCcEEEEEcCCCe----------eEEEeecccCcceeEEEEeeeCCeEEEec
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFR----------EIFRRDFERGGGIGVVEMLFRCNILALVG  146 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~---~~~i~iw~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s  146 (432)
                      ....+...|.+|..+|||..+|+|+   |++++||+.+..-          .....+. ..|...|.++.|++||.+||+
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~dG~~lAs   86 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPDGSYLAS   86 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCCCCeEee
Confidence            3444566799999999999999998   6668899875321          1111222 368899999999999999999


Q ss_pred             CCCCCCCCCCeEEEEeCCC------------------CceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC
Q 014007          147 GGPDPQYPLNKVMIWDDHQ------------------SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL  204 (432)
Q Consensus       147 ~~~d~~~~~~~v~iwd~~~------------------~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~  204 (432)
                      |++|     +.|.||+...                  .+++..+. |...|..++|+|++.++++   |++|.||+..+.
T Consensus        87 GSDD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   87 GSDD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             ccCc-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence            9999     9999998662                  12455666 9999999999999999994   999999999999


Q ss_pred             eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cceeeeecc------CCceeEEEEcCCCCEEEEEc
Q 014007          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH------DSRIACFALTQDGQLLATSS  277 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~  277 (432)
                      +.+..+++|...|..+.|.|-|+++  ++- +.|++|++|++.. +..+.+.++      ......+.|||||++|++..
T Consensus       162 ~~~~vl~~H~s~VKGvs~DP~Gky~--ASq-sdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWDPIGKYF--ASQ-SDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             eeeeeeecccccccceEECCccCee--eee-cCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            9999999999999999999999854  443 3899999999766 333333332      34578999999999999864


Q ss_pred             C----CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC-----CC------------EEEEEeCCCeEEEEEecCCC
Q 014007          278 T----KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-----AQ------------WLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       278 ~----dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~  336 (432)
                      .    -.+ +.|.+-.+.+.-..|-+  |.+++.++.|+|.     .+            .+|+|+.|++|-||.....+
T Consensus       239 A~n~~~~~-~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R  315 (942)
T KOG0973|consen  239 AVNGGKST-IAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR  315 (942)
T ss_pred             hccCCcce-eEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence            3    224 88998877887777776  6689999999981     11            57889999999999997776


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCC
Q 014007          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGG  415 (432)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~  415 (432)
                      ++-..                                  ...-+..|..++|+|||-.|+.++.||+|.+..++...-+
T Consensus       316 Pl~vi----------------------------------~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG  360 (942)
T KOG0973|consen  316 PLFVI----------------------------------HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELG  360 (942)
T ss_pred             chhhh----------------------------------hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence            44211                                  1222356999999999999999999999999999775443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.2e-26  Score=179.09  Aligned_cols=283  Identities=14%  Similarity=0.203  Sum_probs=222.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcC------CCe-------eEEEeecccCcceeEEEEeeeCCeEEEecCCC
Q 014007           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCD------PFR-------EIFRRDFERGGGIGVVEMLFRCNILALVGGGP  149 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~------~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~  149 (432)
                      -...|.+++|+|.|.+.|+|+. ++++|....      ...       .+..+.- .+|...|.+.+|++.+..+++|+.
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~-khhkgsiyc~~ws~~geliatgsn  109 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRN-KHHKGSIYCTAWSPCGELIATGSN  109 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeec-cccCccEEEEEecCccCeEEecCC
Confidence            4568999999999999999984 447665431      100       0111222 378899999999999999999999


Q ss_pred             CCCCCCCeEEEEeCCCCce-----eEEee-cCCceEEEEEecC----ccEEEe----CCeEEEEEcCCCeeeEEEeeccC
Q 014007          150 DPQYPLNKVMIWDDHQSRC-----IGELS-FRSEVRSVKLRRD----RIIVVL----EQKIFVYNFADLKLLHQIETIAN  215 (432)
Q Consensus       150 d~~~~~~~v~iwd~~~~~~-----~~~~~-~~~~v~~~~~~~~----~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~  215 (432)
                      |     .+|++.-++...+     ..++. |.+.|..++|-.+    +.++++    |-.|++-|..+|+..+.+.+|.+
T Consensus       110 d-----k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg  184 (350)
T KOG0641|consen  110 D-----KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG  184 (350)
T ss_pred             C-----ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence            9     9999987654332     23455 9999999999754    556664    66899999999999999999888


Q ss_pred             CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeee--c-----cCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM--A-----HDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~--~-----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd  287 (432)
                      .+.. -+++++-  .++ +|+.|.+|++||++-... .++.  -     ..+.|.+++..|.|++|++|-.|.. ..+||
T Consensus       185 hila-lyswn~~--m~~-sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lyd  259 (350)
T KOG0641|consen  185 HILA-LYSWNGA--MFA-SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYD  259 (350)
T ss_pred             cEEE-EEEecCc--EEE-ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEE
Confidence            7633 3566653  334 588999999999987433 3322  1     2357999999999999999999999 99999


Q ss_pred             CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccccee
Q 014007          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF  367 (432)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (432)
                      ++.++.++.+..  |...|.++.|+|...||++++.|..|++-|++..- .+                            
T Consensus       260 irg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgdl-a~----------------------------  308 (350)
T KOG0641|consen  260 IRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL-AH----------------------------  308 (350)
T ss_pred             eeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccch-hh----------------------------
Confidence            999999999985  67899999999999999999999999999997542 11                            


Q ss_pred             ecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                        +..+.....|.+.+..+.|+|..-.+++.+.|.++.+|.++
T Consensus       309 --el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  309 --ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             --cCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence              11144566788889999999998889999999999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=4.3e-27  Score=209.10  Aligned_cols=239  Identities=21%  Similarity=0.342  Sum_probs=205.0

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      .....|...+..+.|+|++++|++++ ++.|++|++...+..  ..+. .+...+.++.|.+++.++++++.+     +.
T Consensus        45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~  116 (289)
T cd00200          45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV--RTLT-GHTSYVSSVAFSPDGRILSSSSRD-----KT  116 (289)
T ss_pred             EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce--EEEe-ccCCcEEEEEEcCCCCEEEEecCC-----Ce
Confidence            34566888899999999999888888 555999999876544  3343 577789999999998888888877     99


Q ss_pred             EEEEeCCCCceeEEee-cCCceEEEEEecCccEEE--e-CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      |++||+.+++.+..+. |...+.++.|++++.+++  . ++.|++||+++++.+..+..+...+..+.++++++.+++++
T Consensus       117 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  196 (289)
T cd00200         117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS  196 (289)
T ss_pred             EEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec
Confidence            9999999888888888 888999999999888777  3 89999999998888888888888899999999987665432


Q ss_pred             ecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007          234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s  312 (432)
                         .++.|++||++... ...+..|...+.++.|+|++.++++++.++. |++||+.+++.+..+..  |...+.+++|+
T Consensus       197 ---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~  270 (289)
T cd00200         197 ---SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWS  270 (289)
T ss_pred             ---CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEEC
Confidence               59999999998744 4455588899999999999999988888999 99999999988888874  66789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEE
Q 014007          313 SNAQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd  331 (432)
                      +++++|++++.||.|++|+
T Consensus       271 ~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         271 PDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCCEEEEecCCCeEEecC
Confidence            9999999999999999996

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1e-27  Score=223.71  Aligned_cols=272  Identities=19%  Similarity=0.294  Sum_probs=225.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw  161 (432)
                      .+...+.+..|.  ..++++++ +..|++|+..++.... ..+. +|...|.++.+...+..+++|+.|     .++++|
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~-GH~g~V~~l~~~~~~~~lvsgS~D-----~t~rvW  276 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-TRLV-GHFGGVWGLAFPSGGDKLVSGSTD-----KTERVW  276 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEE-eecc-CCCCCceeEEEecCCCEEEEEecC-----CcEEeE
Confidence            367788999998  34566666 5669999988776653 3365 899999999999888899999999     999999


Q ss_pred             eCCCCceeEEee-cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (432)
Q Consensus       162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (432)
                      |..+|++...+. |.+.|.++...+.-..-. .|.+|++|++.++..++.+.+|..+|.++.+.  ++  +++ +|+.|+
T Consensus       277 d~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~--~lv-sgs~d~  351 (537)
T KOG0274|consen  277 DCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP--LLV-SGSYDG  351 (537)
T ss_pred             ecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC--EEE-EEecCc
Confidence            999999999999 999999988765544433 49999999999999999999899999988888  33  333 466899


Q ss_pred             cEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCE
Q 014007          240 QVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQW  317 (432)
Q Consensus       240 ~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~  317 (432)
                      .|++||+.. +.++.+.+|...|+++.+.+. .++++|+.|++ |++||+++. +++.++..  |..-+..+.+  .+++
T Consensus       352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~~  425 (537)
T KOG0274|consen  352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDNF  425 (537)
T ss_pred             eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--ccce
Confidence            999999998 556788999999999988665 78999999999 999999999 99999985  5566766655  6789


Q ss_pred             EEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe-cCCCceEEEEccCCCEEE
Q 014007          318 LAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAFGHQKNTVV  396 (432)
Q Consensus       318 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~  396 (432)
                      |++++.|++|++||..+++++.                                   .+.+ |.+.|..+++.  ...++
T Consensus       426 Lvs~~aD~~Ik~WD~~~~~~~~-----------------------------------~~~~~~~~~v~~l~~~--~~~il  468 (537)
T KOG0274|consen  426 LVSSSADGTIKLWDAEEGECLR-----------------------------------TLEGRHVGGVSALALG--KEEIL  468 (537)
T ss_pred             eEeccccccEEEeecccCceee-----------------------------------eeccCCcccEEEeecC--cceEE
Confidence            9999999999999999988543                                   3444 45677778765  57889


Q ss_pred             EEecCCeEEEEEecC
Q 014007          397 ILGMDGSFYRCQFDP  411 (432)
Q Consensus       397 ~~~~dg~v~iw~~~~  411 (432)
                      +++.||.+++|++..
T Consensus       469 ~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  469 CSSDDGSVKLWDLRS  483 (537)
T ss_pred             EEecCCeeEEEeccc
Confidence            999999999998755

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=4.1e-28  Score=198.86  Aligned_cols=289  Identities=14%  Similarity=0.169  Sum_probs=230.1

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCC------------C----eeEEEeecccCcceeEEEEeeeCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP------------F----REIFRRDFERGGGIGVVEMLFRCN  140 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~------------~----~~~~~~~~~~~~~~~v~~~~~~~~  140 (432)
                      ...+..|...+.+.+|++||.++|+|+ |..|+|.|++.            +    .....+++. .|...|.++.|+|.
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPr  183 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPR  183 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecch
Confidence            355778999999999999999999999 55699999861            0    112234454 68889999999999


Q ss_pred             eEEEecCCCCCCCCCCeEEEEeCCCCceeE---EeecCCceEEEEEecCccEEEe--C-CeEEEEEcCCCeeeEEE---e
Q 014007          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRDRIIVVL--E-QKIFVYNFADLKLLHQI---E  211 (432)
Q Consensus       141 ~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~--d-~~i~i~d~~~~~~~~~~---~  211 (432)
                      ...|++++.|     ++|++||+.+....+   .+....+|.++.|+|.|.+++.  | ..+++||+++.++...-   .
T Consensus       184 e~ILiS~srD-----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~  258 (430)
T KOG0640|consen  184 ETILISGSRD-----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD  258 (430)
T ss_pred             hheEEeccCC-----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence            9999999999     999999998754433   4446789999999999999884  4 58999999998775443   3


Q ss_pred             eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cceeeee-ccC-CceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIM-AHD-SRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (432)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~-~~~-~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~  288 (432)
                      .|...|+.+.+++.++..  + .++.||.|++||--+ +++.++. +|. ..|.+..|..+|+|+++.+.|.. +++|.+
T Consensus       259 qht~ai~~V~Ys~t~~lY--v-TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi  334 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTGSLY--V-TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEI  334 (430)
T ss_pred             ccccceeEEEecCCccEE--E-EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeee
Confidence            567788899999998743  3 356999999999766 4445543 564 46899999999999999999999 999999


Q ss_pred             CCCceEEEEEeCCCcC---ceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007          289 LDGTLLQEVRRGADRA---EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (432)
Q Consensus       289 ~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (432)
                      .+++++.++.+.+..+   --+...|+....|++.-. ..+.+.-||.++...+.-                        
T Consensus       335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l------------------------  390 (430)
T KOG0640|consen  335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL------------------------  390 (430)
T ss_pred             cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh------------------------
Confidence            9999999998753222   234566877778887765 467899999998763211                        


Q ss_pred             ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                                --.+|++.+..+.-||.+.-+++|+.|-..++|.-.
T Consensus       391 ----------~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  391 ----------LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             ----------cccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence                      124799999999999999999999999999999754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-28  Score=208.99  Aligned_cols=243  Identities=18%  Similarity=0.279  Sum_probs=196.9

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ..++.+|..+|..+.||||.++|++++ +..+.+||++++...  ..+..++...+.+++|.||+..+++|+.|     +
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~--~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-----r  334 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR--HLYPSGLGFSVSSCAWCPDGFRFVTGSPD-----R  334 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh--hhcccCcCCCcceeEEccCCceeEecCCC-----C
Confidence            467889999999999999999887776 666999999998876  44544567899999999999999999999     9


Q ss_pred             eEEEEeCCCCceeEEee--cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      .+..||+. |..+...+  -...|.++++++||++++   .|..|++++.++......+ ....+++.++++.+++..++
T Consensus       335 ~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~Lv  412 (519)
T KOG0293|consen  335 TIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALV  412 (519)
T ss_pred             cEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEE
Confidence            99999965 44455444  346799999999999887   3899999998875544433 34568889999999876554


Q ss_pred             EeecCCCCcEEEEEccCC-ceeeeeccCCc--eeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          232 VCPGLQKGQVRVEHYASK-RTKFIMAHDSR--IACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~--i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      -   -.+..+++||+... .++.+.+|...  +-.-+|-- +..++++|++|+. |+||+..+++++.++.+  |...|+
T Consensus       413 n---L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsG--Hs~~vN  486 (519)
T KOG0293|consen  413 N---LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSG--HSKTVN  486 (519)
T ss_pred             E---cccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecC--Ccceee
Confidence            3   37899999999873 44567777654  32333433 5589999999999 99999999999999997  568999


Q ss_pred             EEEECCC-CCEEEEEeCCCeEEEEEecCC
Q 014007          308 SLAFSSN-AQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       308 ~~~~s~~-~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      +++|+|. -.++|++++||+|+||.....
T Consensus       487 cVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  487 CVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            9999995 468999999999999987654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=1.3e-27  Score=207.72  Aligned_cols=281  Identities=12%  Similarity=0.145  Sum_probs=226.9

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe-eEEEeecc-cCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR-EIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      ....|..-|.++.+|...+.+.+|+.++|+|||+.... ......+. ......+.++...+|+..|+.|+.-     .+
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-----st  488 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-----ST  488 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-----ce
Confidence            34558888899999999999999999999999995322 11112221 1356778889999999999999887     89


Q ss_pred             EEEEeCCCCceeE--Eee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          158 VMIWDDHQSRCIG--ELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       158 v~iwd~~~~~~~~--~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      +.|||+.......  ++. ..-.+.+++.+||.++.+   +||.|.|||+.+...++.+++|.+.+.++.++++|..++ 
T Consensus       489 lsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW-  567 (705)
T KOG0639|consen  489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW-  567 (705)
T ss_pred             eeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceee-
Confidence            9999998765433  333 345678899999998777   499999999999999999999999999999999998776 


Q ss_pred             EeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~  311 (432)
                        +|+-|.+|+.||++.++...-....+.|.++.++|++.+|+.|-+++. +.|......+. +.+  +.|+.-|.++.|
T Consensus       568 --TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~skp~k-yql--hlheScVLSlKF  641 (705)
T KOG0639|consen  568 --TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHTSKPEK-YQL--HLHESCVLSLKF  641 (705)
T ss_pred             --cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEecCCccc-eee--cccccEEEEEEe
Confidence              466999999999998665444455778999999999999999999999 88877543332 233  347899999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEec-CCCceEEEEcc
Q 014007          312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIVAFGH  390 (432)
Q Consensus       312 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~  390 (432)
                      .+.|+++++.+.|+.+-.|...-+..+                                     +... ...|.++..|.
T Consensus       642 a~cGkwfvStGkDnlLnawrtPyGasi-------------------------------------FqskE~SsVlsCDIS~  684 (705)
T KOG0639|consen  642 AYCGKWFVSTGKDNLLNAWRTPYGASI-------------------------------------FQSKESSSVLSCDISF  684 (705)
T ss_pred             cccCceeeecCchhhhhhccCccccce-------------------------------------eeccccCcceeeeecc
Confidence            999999999999999999998877632                                     1112 24699999999


Q ss_pred             CCCEEEEEecCCeEEEEEe
Q 014007          391 QKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       391 ~~~~l~~~~~dg~v~iw~~  409 (432)
                      |.++|++|+.|....+|.+
T Consensus       685 ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  685 DDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             CceEEEecCCCcceEEEEE
Confidence            9999999999998888875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=6.4e-27  Score=235.28  Aligned_cols=261  Identities=16%  Similarity=0.172  Sum_probs=203.6

Q ss_pred             EEEEEcCCCeeEEE---eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC----c----eeEEeecCC
Q 014007          108 FRIYNCDPFREIFR---RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----R----CIGELSFRS  176 (432)
Q Consensus       108 i~iw~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~----~----~~~~~~~~~  176 (432)
                      +++|+.........   ..+. .|...|.+++|++++.++++++.|     +.|+|||+...    .    .+..+.+..
T Consensus       460 ~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~i~fs~dg~~latgg~D-----~~I~iwd~~~~~~~~~~~~~~~~~~~~~~  533 (793)
T PLN00181        460 CKYLSFSKLRVKADLKQGDLL-NSSNLVCAIGFDRDGEFFATAGVN-----KKIKIFECESIIKDGRDIHYPVVELASRS  533 (793)
T ss_pred             hhhhcccceEEEEeecccccc-CCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEECCcccccccccccceEEecccC
Confidence            77787665443211   1122 478889999999999999999999     99999997542    1    223344567


Q ss_pred             ceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-
Q 014007          177 EVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-  251 (432)
Q Consensus       177 ~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-  251 (432)
                      .+.+++|++. +.++++   |++|++||+.+++.+..+..|...|..++|+|....+ +++ |+.|+.|++||++.+.. 
T Consensus       534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~-L~S-gs~Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTL-LAS-GSDDGSVKLWSINQGVSI  611 (793)
T ss_pred             ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCE-EEE-EcCCCEEEEEECCCCcEE
Confidence            8999999874 556663   9999999999999999999999999999999743333 343 45899999999987544 


Q ss_pred             eeeeccCCceeEEEEc-CCCCEEEEEcCCCceEEEEECCCCc-eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007          252 KFIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (432)
Q Consensus       252 ~~~~~~~~~i~~~~~s-p~~~~l~~~~~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  329 (432)
                      ..+. +...|.++.|+ ++|.+|++|+.|+. |++||+++.+ .+..+.+  |...|.++.|. ++.+|++++.|++|+|
T Consensus       612 ~~~~-~~~~v~~v~~~~~~g~~latgs~dg~-I~iwD~~~~~~~~~~~~~--h~~~V~~v~f~-~~~~lvs~s~D~~iki  686 (793)
T PLN00181        612 GTIK-TKANICCVQFPSESGRSLAFGSADHK-VYYYDLRNPKLPLCTMIG--HSKTVSYVRFV-DSSTLVSSSTDNTLKL  686 (793)
T ss_pred             EEEe-cCCCeEEEEEeCCCCCEEEEEeCCCe-EEEEECCCCCccceEecC--CCCCEEEEEEe-CCCEEEEEECCCEEEE
Confidence            3444 44689999995 57999999999999 9999998876 4555553  67899999997 7889999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      ||+.......                             ....+..+.+|...++.++|++++++|++|+.||.|++|+.
T Consensus       687 Wd~~~~~~~~-----------------------------~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        687 WDLSMSISGI-----------------------------NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             EeCCCCcccc-----------------------------CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence            9997642100                             00114567789999999999999999999999999999986


Q ss_pred             c
Q 014007          410 D  410 (432)
Q Consensus       410 ~  410 (432)
                      .
T Consensus       738 ~  738 (793)
T PLN00181        738 A  738 (793)
T ss_pred             C
Confidence            4

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.9e-27  Score=212.76  Aligned_cols=245  Identities=14%  Similarity=0.178  Sum_probs=211.2

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      ....+.+.|+++.|+++|.+||+|..++ |.|||....+..  ..+.++|...|-+++|.  ...+.+|+.+     +.|
T Consensus       212 l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--~~~~~~h~~rvg~laW~--~~~lssGsr~-----~~I  282 (484)
T KOG0305|consen  212 LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--RTLRGSHASRVGSLAWN--SSVLSSGSRD-----GKI  282 (484)
T ss_pred             eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--ccccCCcCceeEEEecc--CceEEEecCC-----CcE
Confidence            3344488999999999999999999666 999998876665  55553489999999998  5677788888     999


Q ss_pred             EEEeCCCCceeEE-ee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007          159 MIWDDHQSRCIGE-LS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       159 ~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      ..+|+...+.... +. |...|..+.|++|+.++++   |+.+.|||.....++..+..|...|..++|+|-...++...
T Consensus       283 ~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG  362 (484)
T KOG0305|consen  283 LNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATG  362 (484)
T ss_pred             EEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEc
Confidence            9999998765554 55 9999999999999999995   88999999988889999999999999999999988887666


Q ss_pred             ecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEE--cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS--STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~--~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~  311 (432)
                      +|+.|+.|++||..++...........|.++.|++..+-|+++  ..++. |.||+..+.+.+..+.+  |...|..+++
T Consensus       363 GGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la~  439 (484)
T KOG0305|consen  363 GGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLAL  439 (484)
T ss_pred             CCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEEE
Confidence            7789999999999987776666678899999999988766664  34556 99999999999988886  6688999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          312 SSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       312 s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +|||..+++|+.|.++++|++-...
T Consensus       440 SPdg~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  440 SPDGETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             CCCCCEEEEecccCcEEeccccCCC
Confidence            9999999999999999999997753

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=4.1e-28  Score=193.04  Aligned_cols=243  Identities=15%  Similarity=0.191  Sum_probs=207.5

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .-+..+|.+.|.+..++.+...-|+++ |-+-+|||.-++...  ..+.  |..-|..++|+.+...+++|+.+     .
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel--hsf~--hkhivk~~af~~ds~~lltgg~e-----k  122 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL--HSFE--HKHIVKAVAFSQDSNYLLTGGQE-----K  122 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh--hhhh--hhheeeeEEecccchhhhccchH-----H
Confidence            356789999999999999888888777 666999998888766  6775  88889999999999999999998     9


Q ss_pred             eEEEEeCCCCc-eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          157 KVMIWDDHQSR-CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       157 ~v~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      .++|||++..+ +..++. |.+.|..+.|....+.+++   |++||+||.++++.++.+. ...+++++.++++|+.+.+
T Consensus       123 llrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi  201 (334)
T KOG0278|consen  123 LLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI  201 (334)
T ss_pred             HhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE
Confidence            99999987653 445565 9999999999887666663   8999999999999999986 4678899999999997766


Q ss_pred             EeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~  311 (432)
                      +.    .+.|.+||..+-.+..-..-...|.+..++|+...+++|++|.. ++.||..+++.+..+..+ |.++|.++.|
T Consensus       202 a~----gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~-~~kfDy~TgeEi~~~nkg-h~gpVhcVrF  275 (334)
T KOG0278|consen  202 AY----GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFK-VYKFDYNTGEEIGSYNKG-HFGPVHCVRF  275 (334)
T ss_pred             ec----CceeEEeccccccceeeccCccccccccccCCCceEEecCcceE-EEEEeccCCceeeecccC-CCCceEEEEE
Confidence            53    47899999988444333445677999999999999999999999 999999999998887333 6799999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          312 SSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       312 s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +|||...++|++||+|+||.+..++
T Consensus       276 SPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  276 SPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             CCCCceeeccCCCceEEEEEecCCC
Confidence            9999999999999999999998776

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=9.2e-27  Score=186.50  Aligned_cols=246  Identities=13%  Similarity=0.164  Sum_probs=204.5

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee---cCCceEEEEEecCc-cEEE---eCCeEEEE
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDR-IIVV---LEQKIFVY  199 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~---~d~~i~i~  199 (432)
                      +|...+.+++|+.+|..+++++.|     +++.+|++...+......   |.+.|-.++|+|.. ..++   .|.+|++|
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~d-----ktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFD-----KTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccC-----CceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            688899999999999999999999     999999998886655544   78899999998743 3333   38899999


Q ss_pred             EcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007          200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (432)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (432)
                      |++.+++...+......+ .+.|+|+|+++++   |+.|..|.+.|.++.++..-......+..+.|+.++.+++.....
T Consensus        93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~---~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENI-NITWSPDGEYIAV---GNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             EeccCcEEEEeeccCcce-EEEEcCCCCEEEE---ecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence            999999999887655544 6899999997653   458999999999997776666667788899999888888877788


Q ss_pred             CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeE
Q 014007          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI  359 (432)
Q Consensus       280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (432)
                      |+ |.|......+.+..++.  |+....+|.|+|+|++||+|+.|-.+.+||++..-++.                    
T Consensus       169 G~-v~ILsypsLkpv~si~A--H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R--------------------  225 (313)
T KOG1407|consen  169 GC-VEILSYPSLKPVQSIKA--HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER--------------------  225 (313)
T ss_pred             ce-EEEEecccccccccccc--CCcceEEEEECCCCceEeeccccceeeccChhHhhhhe--------------------
Confidence            99 99999999999999996  66899999999999999999999999999999876543                    


Q ss_pred             eecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          360 KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                                     .+.-++=+|..+.||.||++||+|++|..|-|-.  .++|.++..++
T Consensus       226 ---------------~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~--vetGd~~~eI~  270 (313)
T KOG1407|consen  226 ---------------CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAE--VETGDRVWEIP  270 (313)
T ss_pred             ---------------eeccccCceEEEEeccCcceeeccCccceEEeEe--cccCCeEEEee
Confidence                           3334555699999999999999999999998844  35566555544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-25  Score=185.53  Aligned_cols=253  Identities=14%  Similarity=0.159  Sum_probs=201.5

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-e----CCe
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L----EQK  195 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~----d~~  195 (432)
                      +.+. .....+.++.|+.+|..+++++.|     ..++|||..+++.++++. ++-.+..++|......+. +    |.+
T Consensus         8 k~f~-~~~~~i~sl~fs~~G~~litss~d-----Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    8 KVFR-ETNGKINSLDFSDDGLLLITSSED-----DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             cccc-cCCCceeEEEecCCCCEEEEecCC-----CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence            3443 357789999999999999998888     899999999999999998 677888888877655444 2    779


Q ss_pred             EEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEE
Q 014007          196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT  275 (432)
Q Consensus       196 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~  275 (432)
                      |+..++.+.+.++.+.+|...|..++++|-++.++   +++.|++|++||++....+.+..- ..-..++|+|+|-++|+
T Consensus        82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~Fl---S~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~  157 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFL---SSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFAL  157 (311)
T ss_pred             eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEE---ecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEE
Confidence            99999999999999999999999999999986543   356899999999997655544322 23346789999999999


Q ss_pred             EcCCCceEEEEECCCC--ceEEEEEeC-CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007          276 SSTKGTLVRIFNTLDG--TLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (432)
Q Consensus       276 ~~~dg~~i~vwd~~~~--~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (432)
                      +..... |++||++..  .+..++... ......+.|.|||||++|+.++..+.+++.|.-+|..+.             
T Consensus       158 ~~~~~~-IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~-------------  223 (311)
T KOG1446|consen  158 ANGSEL-IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS-------------  223 (311)
T ss_pred             ecCCCe-EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-------------
Confidence            998887 999999864  344455432 234689999999999999999999999999998887322             


Q ss_pred             CCCceeEeecccceeecceeeEEEEecCC---CceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEG---SPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY  422 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~  422 (432)
                                            ++.++.+   .--...|+||++++++|+.||+|.+|++  ++|.+....+.
T Consensus       224 ----------------------tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~--~tg~~v~~~~~  272 (311)
T KOG1446|consen  224 ----------------------TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL--ETGKKVAVLRG  272 (311)
T ss_pred             ----------------------eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc--CCCcEeeEecC
Confidence                                  2333321   1246789999999999999999999998  55665555444

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.8e-25  Score=209.43  Aligned_cols=223  Identities=9%  Similarity=0.078  Sum_probs=170.2

Q ss_pred             cCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCe--------eeEEEee
Q 014007          146 GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLK--------LLHQIET  212 (432)
Q Consensus       146 s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~--------~~~~~~~  212 (432)
                      +|+.+     +.|++|+......+..+. |.+.|.+++|+|+ +.++++   |++|++||+.++.        ++..+.+
T Consensus        49 gGG~~-----gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g  123 (568)
T PTZ00420         49 GGGLI-----GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG  123 (568)
T ss_pred             CCCce-----eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec
Confidence            45556     899999988777777787 9999999999996 667763   9999999997642        3345678


Q ss_pred             ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc
Q 014007          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (432)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~  292 (432)
                      |...|..++|+|++..++ ++ ++.|+.|++||++++.......|...|.+++|+|+|.+|++++.|+. |+|||+++++
T Consensus       124 H~~~V~sVaf~P~g~~iL-aS-gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~  200 (568)
T PTZ00420        124 HKKKISIIDWNPMNYYIM-CS-SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQE  200 (568)
T ss_pred             CCCcEEEEEECCCCCeEE-EE-EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCc
Confidence            889999999999987553 33 34799999999998654433346788999999999999999999999 9999999999


Q ss_pred             eEEEEEeCCCcCce-----EEEEECCCCCEEEEEeCCC----eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007          293 LLQEVRRGADRAEI-----YSLAFSSNAQWLAVSSDKG----TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (432)
Q Consensus       293 ~~~~~~~~~~~~~i-----~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                      .+..+.+  |.+.+     ....|++++.+|++++.|+    .|+|||+++....                         
T Consensus       201 ~i~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p-------------------------  253 (568)
T PTZ00420        201 IASSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA-------------------------  253 (568)
T ss_pred             EEEEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc-------------------------
Confidence            9988876  43433     2334678999999988664    7999999864311                         


Q ss_pred             cceeecceeeEE--EEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          364 PKYFSSEWSVAQ--FRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       364 ~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                               +..  +..+.+.+.-.-..++|.++++|+.|+.|++|++...
T Consensus       254 ---------l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        254 ---------LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             ---------eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence                     111  2222233333334556889999999999999999653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-27  Score=205.87  Aligned_cols=235  Identities=14%  Similarity=0.196  Sum_probs=200.3

Q ss_pred             cceeEEEEeeeCCe--EEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEc
Q 014007          128 GGIGVVEMLFRCNI--LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNF  201 (432)
Q Consensus       128 ~~~~v~~~~~~~~~--~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~  201 (432)
                      ....|.+++|+|..  .+.++++       -.|.||+..+...++++. +...+.++.|-.||++++.   .|.|++||+
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-------~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~   97 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-------VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM   97 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-------cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence            55688899998853  3444554       689999988888888777 8999999999999999995   689999998


Q ss_pred             CCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-eeeccCCceeEEEEcC-CCCEEEEEcCC
Q 014007          202 ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQ-DGQLLATSSTK  279 (432)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~~~~~i~~~~~sp-~~~~l~~~~~d  279 (432)
                      .+...++.+..|..++..+.|+|+++.+++  +|+.|+.+++||+.+..+. .+.+|+..|.|.+|+| +++++++|+.|
T Consensus        98 k~r~iLR~~~ah~apv~~~~f~~~d~t~l~--s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD  175 (487)
T KOG0310|consen   98 KSRVILRQLYAHQAPVHVTKFSPQDNTMLV--SGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD  175 (487)
T ss_pred             ccHHHHHHHhhccCceeEEEecccCCeEEE--ecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence            776678888999999999999999987654  4568999999999997764 6789999999999999 56689999999


Q ss_pred             CceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007          280 GTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF  358 (432)
Q Consensus       280 g~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (432)
                      |. |++||++.. ..+.++.   |..+|-++.+-|.|..+++++ .+.|+|||+.++.++                    
T Consensus       176 g~-vrl~DtR~~~~~v~eln---hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~ql--------------------  230 (487)
T KOG0310|consen  176 GK-VRLWDTRSLTSRVVELN---HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQL--------------------  230 (487)
T ss_pred             ce-EEEEEeccCCceeEEec---CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCcee--------------------
Confidence            99 999999987 6777777   778999999999999999987 567999999977643                    


Q ss_pred             EeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                                    +.....|...|+|+++..++..|++|+-||.|++|++.
T Consensus       231 --------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  231 --------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             --------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence                          22233488889999999999999999999999999853

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.3e-26  Score=197.16  Aligned_cols=290  Identities=16%  Similarity=0.198  Sum_probs=229.6

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeE---EEe-----------ecc-cCcceeEEEEeeeCCe
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI---FRR-----------DFE-RGGGIGVVEMLFRCNI  141 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~---~~~-----------~~~-~~~~~~v~~~~~~~~~  141 (432)
                      ......|.-+|.|++++|++++..+++ ++.|.-|++.+++..   ...           ... .+|...+.+++.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            467788999999999999999999988 455988998766532   111           011 1678889999999999


Q ss_pred             EEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCcc--EEE-eCCeEEEEEcCCCeeeEEEeeccCCc
Q 014007          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI--IVV-LEQKIFVYNFADLKLLHQIETIANPK  217 (432)
Q Consensus       142 ~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~--~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~  217 (432)
                      .++++|+.|     ..|.||+..+.+.++.+. |.+.|.+++|-....  |.+ .|..|++|++.....+.++.+|.+.|
T Consensus       215 kylatgg~d-----~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v  289 (479)
T KOG0299|consen  215 KYLATGGRD-----RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV  289 (479)
T ss_pred             cEEEecCCC-----ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence            999999999     999999999999999988 999999999986544  333 49999999999988888888998888


Q ss_pred             ceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEE
Q 014007          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~  297 (432)
                      ..+....-.+  . ++.|+.|+++++|++.......+.+|.+.+.|++|-.+. .+++|+.+|. |.+|++...+++.+.
T Consensus       290 ~~IdaL~reR--~-vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~-IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  290 LGIDALSRER--C-VTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGS-IALWSLLKKKPLFTS  364 (479)
T ss_pred             eeechhcccc--e-EEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc-ceeeccCCce-EEEeeecccCceeEe
Confidence            7666555443  3 445669999999999777777788999999999998655 6789999999 999999999988877


Q ss_pred             EeCC----------CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccccee
Q 014007          298 RRGA----------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF  367 (432)
Q Consensus       298 ~~~~----------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (432)
                      ....          ++..|++++..|...++|+|+.+|.|++|.+..+-..                 +..         
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~-----------------i~~---------  418 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA-----------------INL---------  418 (479)
T ss_pred             eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc-----------------cce---------
Confidence            6431          1127999999999999999999999999999887310                 000         


Q ss_pred             ecceeeEEEEecCCCceEEEEccCCCEEEEE-ecCCeEEEEEe
Q 014007          368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL-GMDGSFYRCQF  409 (432)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~  409 (432)
                           +..+. -.+.|++++|+++|++|++| +....+--|-.
T Consensus       419 -----l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  419 -----LYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             -----eeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence                 12222 23579999999999966554 55666655654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=5.5e-26  Score=185.75  Aligned_cols=274  Identities=14%  Similarity=0.146  Sum_probs=209.5

Q ss_pred             CCcccCCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCC-eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC
Q 014007           76 PAESTSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (432)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (432)
                      ....+.....+.|.+|+|||... +|++|+ |++||+|+++.. .... +... .+...+.+++|+.++..+++++.|  
T Consensus        18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~-~~~~PvL~v~WsddgskVf~g~~D--   93 (347)
T KOG0647|consen   18 KDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQ-SHDGPVLDVCWSDDGSKVFSGGCD--   93 (347)
T ss_pred             cceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhh-ccCCCeEEEEEccCCceEEeeccC--
Confidence            44566777889999999999544 555666 999999999764 3333 3332 689999999999999999999999  


Q ss_pred             CCCCeEEEEeCCCCceeEEeecCCceEEEEEecCcc--EEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI--IVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       153 ~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                         +.+++||+.+++....-.|..+|..+.|-+...  .+++   |.+|+.||.+...++.++... ..  +.+.+-...
T Consensus        94 ---k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eR--vYa~Dv~~p  167 (347)
T KOG0647|consen   94 ---KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ER--VYAADVLYP  167 (347)
T ss_pred             ---CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ce--eeehhccCc
Confidence               999999999997766666999999999998766  4553   999999999998888887643 23  333333333


Q ss_pred             cEEEEeecCCCCcEEEEEccCCcee--ee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC--ceEEEEEeCCC
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTK--FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRGAD  302 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~--~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~--~~~~~~~~~~~  302 (432)
                      .+++++   .+..|.+|++++....  .. ....-.+.||+..+|....+.|+..|. +.|..+..+  +.-..|+.|..
T Consensus       168 m~vVat---a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~  243 (347)
T KOG0647|consen  168 MAVVAT---AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRS  243 (347)
T ss_pred             eeEEEe---cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEecc
Confidence            444443   6799999999874322  11 223456889999999888899999999 999988876  44445555421


Q ss_pred             -------cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEE
Q 014007          303 -------RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ  375 (432)
Q Consensus       303 -------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (432)
                             -..|.+|+|+|.-..|++++.||++.+||-+....++                                   .
T Consensus       244 ~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk-----------------------------------~  288 (347)
T KOG0647|consen  244 TNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK-----------------------------------T  288 (347)
T ss_pred             CCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh-----------------------------------c
Confidence                   1358889999999999999999999999988765433                                   2


Q ss_pred             EEecCCCceEEEEccCCCEEEEE
Q 014007          376 FRLVEGSPYIVAFGHQKNTVVIL  398 (432)
Q Consensus       376 ~~~~~~~v~~~~~s~~~~~l~~~  398 (432)
                      ...|..+|++.+|+.+|.++|-+
T Consensus       289 s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  289 SETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             cCcCCCccceeEecCCCCEEEEE
Confidence            34567789999999999987744

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.4e-25  Score=209.24  Aligned_cols=243  Identities=12%  Similarity=0.097  Sum_probs=180.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEE-----------eecccCcceeEEEEeeeC-CeEEEecCCCC
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFR-----------RDFERGGGIGVVEMLFRC-NILALVGGGPD  150 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d  150 (432)
                      +-..|.....++|+..+++++.+. ...|+...+.....           ..+. +|...|.++.|+| ++..+++++.|
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~D   97 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASED   97 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeCC
Confidence            334555566666755555554433 45565433322110           1233 7889999999999 78899999999


Q ss_pred             CCCCCCeEEEEeCCCC-------ceeEEee-cCCceEEEEEecCc-cEEEe---CCeEEEEEcCCCeeeEEEeeccCCcc
Q 014007          151 PQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDR-IIVVL---EQKIFVYNFADLKLLHQIETIANPKG  218 (432)
Q Consensus       151 ~~~~~~~v~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~-~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~  218 (432)
                           ++|++||+.++       +.+..+. |...|.+++|+|++ .++++   |++|+|||+++++.+..+..|...+.
T Consensus        98 -----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~  172 (493)
T PTZ00421         98 -----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT  172 (493)
T ss_pred             -----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence                 99999999765       2455666 89999999999975 45553   89999999999999989988999999


Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCc-eeEEEEcCCCCEEEEEc----CCCceEEEEECCCCc
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR-IACFALTQDGQLLATSS----TKGTLVRIFNTLDGT  292 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~-i~~~~~sp~~~~l~~~~----~dg~~i~vwd~~~~~  292 (432)
                      .++|+|++..+  ++ ++.|+.|++||++++. +..+.+|.+. +..+.|.+++..|++++    .|+. |++||+++..
T Consensus       173 sla~spdG~lL--at-gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~  248 (493)
T PTZ00421        173 SLEWNLDGSLL--CT-TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMA  248 (493)
T ss_pred             EEEEECCCCEE--EE-ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCC
Confidence            99999998744  33 4589999999999854 4567778764 45678999887777654    4788 9999998765


Q ss_pred             e-EEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCC
Q 014007          293 L-LQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSG  337 (432)
Q Consensus       293 ~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~  337 (432)
                      . +.....+ ....+....|++++.+|++++ .|+.|++||+.+++.
T Consensus       249 ~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        249 SPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             CceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence            3 3333322 334566778999999999887 599999999998763

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.5e-26  Score=187.33  Aligned_cols=239  Identities=15%  Similarity=0.257  Sum_probs=198.1

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE--EEecCCCCCCCCCC
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQYPLN  156 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~~~~~  156 (432)
                      ....|..+|++++.+  +.++|+|+ |.+|+|||+......  ..+. .|...|+++.|.++..  .|++|..|     |
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql--g~ll-~HagsitaL~F~~~~S~shLlS~sdD-----G  107 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL--GILL-SHAGSITALKFYPPLSKSHLLSGSDD-----G  107 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh--ccee-ccccceEEEEecCCcchhheeeecCC-----C
Confidence            456799999999986  78999998 777999999776554  3443 5899999999988775  89999999     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      .|.+|+....+++..++ |.+.|+.++++|.+++..+   |+.++.||+-+|+.-..+.. ......+.|+|.|+++++.
T Consensus       108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~  186 (362)
T KOG0294|consen  108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVS  186 (362)
T ss_pred             cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEE
Confidence            99999999999999999 9999999999999998874   89999999999876555543 2334469999999987765


Q ss_pred             eecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE-
Q 014007          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF-  311 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~-  311 (432)
                      .    ...|-+|.++...+.........+.|+.|. ++..|++|..|+. |++||..+..++..+..  |+..|.++.+ 
T Consensus       187 ~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~A--H~~RVK~i~~~  258 (362)
T KOG0294|consen  187 G----RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLA--HENRVKDIASY  258 (362)
T ss_pred             e----ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeec--chhheeeeEEE
Confidence            3    468899999886554444445678888886 5668999999999 99999999999988885  7789999984 


Q ss_pred             -CCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          312 -SSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       312 -s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                       .|++.+|++++.||.|+|||++....
T Consensus       259 ~~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  259 TNPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             ecCCceEEEEeccCceEEEEEcccccc
Confidence             56788999999999999999988753

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.9e-25  Score=183.32  Aligned_cols=270  Identities=14%  Similarity=0.189  Sum_probs=204.8

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      ++...+.+.|++|.|+|.+..|++++ |+.+++|++......  ..+.  |..++.+++|.++. .+++|+-|     |.
T Consensus         7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--~~~~--~~~plL~c~F~d~~-~~~~G~~d-----g~   76 (323)
T KOG1036|consen    7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--LKFK--HGAPLLDCAFADES-TIVTGGLD-----GQ   76 (323)
T ss_pred             ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--hhee--cCCceeeeeccCCc-eEEEeccC-----ce
Confidence            34455678999999999877666666 989999999877544  5564  88999999999854 45566666     99


Q ss_pred             EEEEeCCCCceeEEeecCCceEEEEEecC-ccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRD-RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      |+.+|+.+++....-.|..+|.++.+++- +.+++  .|++|++||.+.......+... +  ...+++-.++.+++++ 
T Consensus        77 vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-k--kVy~~~v~g~~LvVg~-  152 (323)
T KOG1036|consen   77 VRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-K--KVYCMDVSGNRLVVGT-  152 (323)
T ss_pred             EEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-c--eEEEEeccCCEEEEee-
Confidence            99999999988777779999999999975 44444  3999999999875444444332 2  3456666677776554 


Q ss_pred             cCCCCcEEEEEccCCceee---eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC----ceEEEEEeCCCc----
Q 014007          235 GLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----TLLQEVRRGADR----  303 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~~~~---~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~----~~~~~~~~~~~~----  303 (432)
                        .+..|.+||+++.....   -..-+-.+.|+++-|++.=.++++.||. |.+=.+...    +....|+.|...    
T Consensus       153 --~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~  229 (323)
T KOG1036|consen  153 --SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDT  229 (323)
T ss_pred             --cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCc
Confidence              78999999999843221   2234567899999998888999999998 877655544    334455543211    


Q ss_pred             ---CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC
Q 014007          304 ---AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE  380 (432)
Q Consensus       304 ---~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (432)
                         .+|.+|+|+|-...|++|+.||.|.+||+.+.+.+..                                   +..-+
T Consensus       230 ~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q-----------------------------------~~~~~  274 (323)
T KOG1036|consen  230 EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQ-----------------------------------LAKYE  274 (323)
T ss_pred             eEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhh-----------------------------------ccCCC
Confidence               3799999999999999999999999999999875432                                   22234


Q ss_pred             CCceEEEEccCCCEEEEEec
Q 014007          381 GSPYIVAFGHQKNTVVILGM  400 (432)
Q Consensus       381 ~~v~~~~~s~~~~~l~~~~~  400 (432)
                      ..|.+++|+.||..||+++.
T Consensus       275 ~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  275 TSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CceEEEEeccCCCeEEEEec
Confidence            56999999999999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9.1e-27  Score=185.83  Aligned_cols=238  Identities=15%  Similarity=0.172  Sum_probs=191.4

Q ss_pred             CCCCCeEEEEEcCCCC-E-EEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEE
Q 014007           83 SPPPTLLHISFNQDHG-C-FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~-~-l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~  159 (432)
                      .-.+.+..++|+++.. . +++.+|+.++|||+.... .....++ .|...|.++.|++ ++..+++++-|     ++|+
T Consensus        58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD-----~TiK  130 (311)
T KOG0277|consen   58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-KPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWD-----GTIK  130 (311)
T ss_pred             ecccceeEeeecCCCcceEEEEecCceEEEeccCCCC-cchhHHH-hhhhheEEeccccccceeEEeeccC-----CceE
Confidence            3467899999998654 3 444457779999964332 2335665 7999999999987 45667777999     9999


Q ss_pred             EEeCCCCceeEEee-cCCceEEEEEecC-ccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          160 IWDDHQSRCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       160 iwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      +|+...++.+.++. |...|...+|+|. ..+++   .|+++++||++.......+..|...+.++.|+.-...+ +++ 
T Consensus       131 LW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v-l~T-  208 (311)
T KOG0277|consen  131 LWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV-LAT-  208 (311)
T ss_pred             eecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcE-EEe-
Confidence            99999999999999 9999999999995 45555   39999999998744444488888888899998877655 444 


Q ss_pred             cCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCc-eEEEEEeCCCcCceEEEE
Q 014007          235 GLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLA  310 (432)
Q Consensus       235 g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~~~  310 (432)
                      |+.|+.|+.||++.  ..+..+.+|.-.|..++|||. ..+||+++.|=+ +||||...+. ++.+...  |...+..+.
T Consensus       209 g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~~--HtEFv~g~D  285 (311)
T KOG0277|consen  209 GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVDH--HTEFVCGLD  285 (311)
T ss_pred             cCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhhc--cceEEeccc
Confidence            56999999999998  456677899999999999994 568999999999 9999987543 4444542  778899999


Q ss_pred             ECC-CCCEEEEEeCCCeEEEEEe
Q 014007          311 FSS-NAQWLAVSSDKGTVHVFNL  332 (432)
Q Consensus       311 ~s~-~~~~l~~~~~dg~i~iwd~  332 (432)
                      ||+ ++.++|+++.|+.++||+-
T Consensus       286 ws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  286 WSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccccCceeeecccccceeeecc
Confidence            998 5679999999999999984

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=3.2e-25  Score=206.85  Aligned_cols=200  Identities=14%  Similarity=0.219  Sum_probs=159.0

Q ss_pred             cCCceEEEEEec-CccEEEe---CCeEEEEEcCCC-------eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007          174 FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADL-------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (432)
Q Consensus       174 ~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (432)
                      |.+.|.+++|+| ++.++++   |++|++||+.++       +.+..+.+|...|..++|+|++..++ ++ ++.|+.|+
T Consensus        74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iL-aS-gs~DgtVr  151 (493)
T PTZ00421         74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVL-AS-AGADMVVN  151 (493)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEE-EE-EeCCCEEE
Confidence            889999999999 7777763   899999999764       34667888999999999999876543 33 34899999


Q ss_pred             EEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007          243 VEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (432)
Q Consensus       243 i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  321 (432)
                      +||+..+. ...+..|...|.+++|+|+|.+|++++.|+. |++||+++++.+..+..+. ...+..+.|.+++..|+++
T Consensus       152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rsg~~v~tl~~H~-~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRDGTIVSSVEAHA-SAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCCCcEEEEEecCC-CCcceEEEEcCCCCeEEEE
Confidence            99998854 4567789999999999999999999999999 9999999999988887542 2235578899988887765


Q ss_pred             e----CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC-CCceEEEEccCCCEEE
Q 014007          322 S----DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGHQKNTVV  396 (432)
Q Consensus       322 ~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~  396 (432)
                      +    .|+.|++||+++....                                  +.....+. ..+....|++++++|+
T Consensus       230 G~s~s~Dr~VklWDlr~~~~p----------------------------------~~~~~~d~~~~~~~~~~d~d~~~L~  275 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKMASP----------------------------------YSTVDLDQSSALFIPFFDEDTNLLY  275 (493)
T ss_pred             ecCCCCCCeEEEEeCCCCCCc----------------------------------eeEeccCCCCceEEEEEcCCCCEEE
Confidence            4    4789999999875421                                  11112222 3455678999999999


Q ss_pred             EEec-CCeEEEEEecC
Q 014007          397 ILGM-DGSFYRCQFDP  411 (432)
Q Consensus       397 ~~~~-dg~v~iw~~~~  411 (432)
                      +++. ||.|++|++..
T Consensus       276 lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        276 IGSKGEGNIRCFELMN  291 (493)
T ss_pred             EEEeCCCeEEEEEeeC
Confidence            8884 99999999964

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=3e-26  Score=216.99  Aligned_cols=253  Identities=17%  Similarity=0.155  Sum_probs=204.8

Q ss_pred             CCcccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC------C----------eeEEEeecccCcceeEEEEeee
Q 014007           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP------F----------REIFRRDFERGGGIGVVEMLFR  138 (432)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~------~----------~~~~~~~~~~~~~~~v~~~~~~  138 (432)
                      ........|.+.|+|+.|+|||++||+|+|+. |.||....      +          .......+. +|...|.+++|+
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWS  138 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccC
Confidence            34456778999999999999999999999888 99998762      0          011224554 799999999999


Q ss_pred             CCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc
Q 014007          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA  214 (432)
Q Consensus       139 ~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~  214 (432)
                      |++.++++++.|     ++|.|||..+.+.+..+. |.+.|.++.|.|-|+|+++   |++|++|++.+....+.+..+.
T Consensus       139 p~~~~lvS~s~D-----nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  139 PDDSLLVSVSLD-----NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             CCccEEEEeccc-----ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence            999999999999     999999999999999999 9999999999999999995   8899999988877777665433


Q ss_pred             C------CcceEEEecCCCcEEEEeec-CCCCcEEEEEccC-CceeeeeccCCceeEEEEcCC-----CC----------
Q 014007          215 N------PKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQD-----GQ----------  271 (432)
Q Consensus       215 ~------~~~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~-----~~----------  271 (432)
                      .      .+..+.|+|||.++..+.+- +.-..+.|.+-.+ +.-..+.+|.+++.+++|+|.     .+          
T Consensus       214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence            2      34568999999976543210 1234566766655 335668899999999999981     11          


Q ss_pred             --EEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          272 --LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       272 --~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                        .+|+|+.|++ |.||.....+++..+..- ....|.+++|+|||..|++++.||+|.++.++..+
T Consensus       294 y~i~AvgSqDrS-lSVW~T~~~RPl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  294 YCIAAVGSQDRS-LSVWNTALPRPLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             eEEEEEecCCcc-EEEEecCCCCchhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence              6889999999 999998888877666532 34789999999999999999999999999987644

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=1.4e-26  Score=196.72  Aligned_cols=238  Identities=18%  Similarity=0.277  Sum_probs=201.0

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ..++.+..+.|+++.|.++++.+++++ |+.+++|+++..+..  .++. +|...|+++.|.-....+++++.|     .
T Consensus       212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~--~TLs-GHtdkVt~ak~~~~~~~vVsgs~D-----R  283 (459)
T KOG0288|consen  212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR--HTLS-GHTDKVTAAKFKLSHSRVVSGSAD-----R  283 (459)
T ss_pred             hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh--hhhc-ccccceeeehhhccccceeecccc-----c
Confidence            356777788999999999999776666 666999999877765  6777 799999999998877779999999     9


Q ss_pred             eEEEEeCCCCceeEEeecCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      +|++||+....+.+++-..+.+.+|..+  ...++   .|++|++||++...+...+..+. .++++.+++++..++ .+
T Consensus       284 tiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lL-ss  359 (459)
T KOG0288|consen  284 TIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELL-SS  359 (459)
T ss_pred             hhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEe-ee
Confidence            9999999999999888878888888877  33333   48899999999999988887655 899999999988764 33


Q ss_pred             ecCCCCcEEEEEccCCceeeee-c----cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007          234 PGLQKGQVRVEHYASKRTKFIM-A----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~~~~~~~~-~----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  308 (432)
                        +.|..+.++|+++..+.... +    .....+.+.|||++.|+++|+.||. |+||++.++++...+........|++
T Consensus       360 --sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s  436 (459)
T KOG0288|consen  360 --SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITS  436 (459)
T ss_pred             --cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEE
Confidence              48999999999997665432 1    2334889999999999999999999 99999999999999887543347999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEE
Q 014007          309 LAFSSNAQWLAVSSDKGTVHVF  330 (432)
Q Consensus       309 ~~~s~~~~~l~~~~~dg~i~iw  330 (432)
                      ++|+|.|..|++++.++.+.+|
T Consensus       437 ~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  437 LSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EEEcCCCchhhcccCCcceEec
Confidence            9999999999999999999999

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=5.4e-26  Score=205.67  Aligned_cols=242  Identities=12%  Similarity=0.191  Sum_probs=203.4

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecC---ccEEEe---CCeEEEEE
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD---RIIVVL---EQKIFVYN  200 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~---~~~~~~---d~~i~i~d  200 (432)
                      ....+.+++.+|++.+|++|+..     |++++|++...+....++ |...|.|+.|+..   .+++++   |.-|++||
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~-----GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D  532 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRG-----GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD  532 (1080)
T ss_pred             cccceEEEEECCCcceecccCcc-----CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence            34578899999999999999999     999999999988888888 9999999999863   455663   77899999


Q ss_pred             cCC-CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cceeeeecc-----CCceeEEEEcCCCCEE
Q 014007          201 FAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH-----DSRIACFALTQDGQLL  273 (432)
Q Consensus       201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~-----~~~i~~~~~sp~~~~l  273 (432)
                      ... ..+++++.+|...|+.+.|.-.|-+.-++++| .|..|.+--.+. .....+..|     ...++.|+..|..+++
T Consensus       533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscG-ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v  611 (1080)
T KOG1408|consen  533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG-ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV  611 (1080)
T ss_pred             cccccchhhhhcccccceeEEEEeecCCceEEEecc-CchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence            865 45678899999999999999988666566556 677765433222 222222222     3568999999999999


Q ss_pred             EEEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007          274 ATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (432)
Q Consensus       274 ~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (432)
                      ++++.|.. |+|||+.+++..+.|++. .|++....+...|.|-||++.+.|.++.++|.-++++               
T Consensus       612 ~t~cQDrn-irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc---------------  675 (1080)
T KOG1408|consen  612 VTVCQDRN-IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC---------------  675 (1080)
T ss_pred             EEEecccc-eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh---------------
Confidence            99999999 999999999999999974 3557888999999999999999999999999999985               


Q ss_pred             CCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                          +++..+|...|+.+.|.+|.++|++++.||.|+||.+..
T Consensus       676 --------------------vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  676 --------------------VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             --------------------hhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence                                456778999999999999999999999999999999966

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1e-26  Score=191.92  Aligned_cols=243  Identities=17%  Similarity=0.221  Sum_probs=204.3

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee---------cCCceEEEEEecCccEEEe---CC
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---------FRSEVRSVKLRRDRIIVVL---EQ  194 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~---d~  194 (432)
                      +....+-+..|+|++.++++|+-|     |-|.+||..+|+..+.++         +...|.|+.|+.|...+++   ||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvD-----GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG  285 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVD-----GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG  285 (508)
T ss_pred             ccccchhheeeCCCCceEeecccc-----ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence            456677788899999999999999     999999999997665443         5788999999999999984   99


Q ss_pred             eEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCE
Q 014007          195 KIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQL  272 (432)
Q Consensus       195 ~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~  272 (432)
                      .|++|.+++|.+++.+. .|...+.++.|+.|+..++   +++.|.++++.-+.+ +.++.+.+|.+.|+...|.+||++
T Consensus       286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL---S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~  362 (508)
T KOG0275|consen  286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL---SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH  362 (508)
T ss_pred             cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhh---cccccceEEEeccccchhHHHhcCccccccceEEcCCCCe
Confidence            99999999999999986 8999999999999998765   345899999999988 456789999999999999999999


Q ss_pred             EEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCC
Q 014007          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTL  351 (432)
Q Consensus       273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  351 (432)
                      +++++.||+ |++|+.++.+|+.+|+......+|.++-.-|. -..++++...++|+|.++...- ++.           
T Consensus       363 iisaSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-Vrs-----------  429 (508)
T KOG0275|consen  363 IISASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-VRS-----------  429 (508)
T ss_pred             EEEecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE-Eee-----------
Confidence            999999999 99999999999999998777778998887774 4578888889999999987543 110           


Q ss_pred             CCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          352 PTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                           +..-+...+..-+.+.||.|.++.+.++|+.+|-|.+-.
T Consensus       430 ---------------------fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s  468 (508)
T KOG0275|consen  430 ---------------------FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS  468 (508)
T ss_pred             ---------------------eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence                                 111112234455678899999999999999999877643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=6.3e-26  Score=195.44  Aligned_cols=284  Identities=15%  Similarity=0.182  Sum_probs=217.8

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCCeE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKV  158 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v  158 (432)
                      .....+.|++|.|+|...+|.+++ |+.++||.++.........+. -...+|.+..|.|+|. .+++++..     ..+
T Consensus       209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~  282 (514)
T KOG2055|consen  209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRR-----KYL  282 (514)
T ss_pred             CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccc-----eEE
Confidence            333467999999999999888777 777999999765544434442 3567888999999998 77788776     889


Q ss_pred             EEEeCCCCceeEEee----cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          159 MIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      +.||+.+.+..+.-.    ....+....+++++.+++.   .|.|.+....+++.+..++. .+.+..++|+.+++.++ 
T Consensus       283 ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~-  360 (514)
T KOG2055|consen  283 YSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELL-  360 (514)
T ss_pred             EEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEE-
Confidence            999998886544322    2345777889999999885   67999999999999988864 56788899999997655 


Q ss_pred             EeecCCCCcEEEEEccCCceeeeeccCCce--eEEEEcCCCCEEEEEcCCCceEEEEECCC------CceEEEEEeCCCc
Q 014007          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRI--ACFALTQDGQLLATSSTKGTLVRIFNTLD------GTLLQEVRRGADR  303 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i--~~~~~sp~~~~l~~~~~dg~~i~vwd~~~------~~~~~~~~~~~~~  303 (432)
                      ++ | .+|.|.+||++...+.....-++.|  ++++.+++|.+||+|+..|. |.|||..+      .+++..+..  ..
T Consensus       361 ~~-~-~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN--Lt  435 (514)
T KOG2055|consen  361 AS-G-GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN--LT  435 (514)
T ss_pred             EE-c-CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--hh
Confidence            43 2 5799999999996554433334444  56777899999999999999 99999653      355666553  34


Q ss_pred             CceEEEEECCCCCEEEEEe--CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007          304 AEIYSLAFSSNAQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG  381 (432)
Q Consensus       304 ~~i~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (432)
                      ..|++|+|++|++.||.++  .+..+++-.+.+......++                                .....-+
T Consensus       436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP--------------------------------~~n~~vg  483 (514)
T KOG2055|consen  436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP--------------------------------TSNTKVG  483 (514)
T ss_pred             eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC--------------------------------CCCCccc
Confidence            6899999999999999887  57789998887765221111                                0112225


Q ss_pred             CceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          382 SPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      .|++++|||.+.+||.|..+|.|.+|.+
T Consensus       484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  484 HVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             ceEEEEecCCCceEEeecCCCceeeEee
Confidence            6999999999999999999999999987

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.8e-26  Score=186.15  Aligned_cols=287  Identities=14%  Similarity=0.204  Sum_probs=235.2

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      ....+|.+.|..++......++.+++ |.+.+||.++++.+.  ..+. +|...|.++.|++.+.++++++.|     ++
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL--~~Y~-GH~GSVNsikfh~s~~L~lTaSGD-----~t  213 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL--ATYT-GHTGSVNSIKFHNSGLLLLTASGD-----ET  213 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeeccccce--eeec-ccccceeeEEeccccceEEEccCC-----cc
Confidence            56789999999999988778888887 777999999999887  5555 899999999999999999999999     89


Q ss_pred             EEEEeC------CC------------------------------C----ceeEEee-cCCceEEEEEecCccEEEe---C
Q 014007          158 VMIWDD------HQ------------------------------S----RCIGELS-FRSEVRSVKLRRDRIIVVL---E  193 (432)
Q Consensus       158 v~iwd~------~~------------------------------~----~~~~~~~-~~~~v~~~~~~~~~~~~~~---d  193 (432)
                      -.||..      ..                              +    .++..+. |...|.+..|-..|..++.   |
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD  293 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD  293 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence            999951      00                              0    0233455 7788888888888877773   9


Q ss_pred             CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCC
Q 014007          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ  271 (432)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~  271 (432)
                      .+..+||+++++.++.+.+|....+.++-+|..+  ++++ .+.|.+.++||++.  ..+..|++|...|+++.|.-+. 
T Consensus       294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr--LVvT-sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-  369 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQR--LVVT-SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-  369 (481)
T ss_pred             ccceeeeeccCceeccccCcchhccccccCCcce--EEEE-eccCceeEeccchhhcceeeeecccccceeEEEEecCC-
Confidence            9999999999999999999999998888888765  3333 45899999999996  4567899999999999998766 


Q ss_pred             EEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCC
Q 014007          272 LLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT  350 (432)
Q Consensus       272 ~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  350 (432)
                      .+++|+.|.+ |+|||+++. ..+.++.   ...+++.++.+..+..|+.--++..|++||+...+..            
T Consensus       370 ~vVSgSDDrT-vKvWdLrNMRsplATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla------------  433 (481)
T KOG0300|consen  370 RVVSGSDDRT-VKVWDLRNMRSPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA------------  433 (481)
T ss_pred             ceeecCCCce-EEEeeeccccCcceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCCccc------------
Confidence            4789999999 999999986 4677777   4478999999998889998888999999999876621            


Q ss_pred             CCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC--CEEEEEecCCeEEEEEecCC
Q 014007          351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK--NTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~v~iw~~~~~  412 (432)
                                 .+|        ...-.+|...|.+++|..+.  .-|++++.|..+.-|+++..
T Consensus       434 -----------RlP--------rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  434 -----------RLP--------RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             -----------cCC--------cccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence                       111        12345788899999998653  35889999999999998754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.6e-26  Score=206.99  Aligned_cols=275  Identities=16%  Similarity=0.287  Sum_probs=216.1

Q ss_pred             EEEEc-CCCCEEEEEcCCc-EEEEEcCCCeeE----EEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           90 HISFN-QDHGCFAAGTDHG-FRIYNCDPFREI----FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        90 ~~~~s-~~~~~l~~~~~~~-i~iw~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      .+..+ |.+++|.+|+.++ |++|++......    +...++ .|...|.++....++..+++++.|     .+|++|+.
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsD-----tTVK~W~~  102 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSD-----TTVKVWNA  102 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCC-----ceEEEeec
Confidence            44554 4567799988555 999998543332    345565 799999999999999999999999     99999999


Q ss_pred             CCC--ceeEEee-cCCceEEEEE-ecCccEEEe---CCeEEEEEcCCCe--eeEE--------Ee-eccCCcceEEEecC
Q 014007          164 HQS--RCIGELS-FRSEVRSVKL-RRDRIIVVL---EQKIFVYNFADLK--LLHQ--------IE-TIANPKGLCAVSQG  225 (432)
Q Consensus       164 ~~~--~~~~~~~-~~~~v~~~~~-~~~~~~~~~---d~~i~i~d~~~~~--~~~~--------~~-~~~~~~~~~~~~~~  225 (432)
                      ..+  -++.++. |...|.|+++ .++..++++   |+.|.+||++++.  .+..        +. ++...+.+++..+.
T Consensus       103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t  182 (735)
T KOG0308|consen  103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT  182 (735)
T ss_pred             ccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence            887  5777787 9999999999 667777774   8899999999762  2222        22 45567777888887


Q ss_pred             CCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC
Q 014007          226 VGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (432)
Q Consensus       226 ~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~  304 (432)
                      |  .+++ +|+..+.+++||-++ +++..+.+|...|.++..++||..+++++.||+ |++||+...+|+.++..  |..
T Consensus       183 ~--t~iv-sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~v--H~e  256 (735)
T KOG0308|consen  183 G--TIIV-SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYIV--HKE  256 (735)
T ss_pred             c--eEEE-ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEEe--ccC
Confidence            7  3444 567899999999998 567778899999999999999999999999999 99999999999999986  667


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  384 (432)
                      .|+++..+|+=..+++|+.||.|+.=|+++....                                   ..+-..+.+|.
T Consensus       257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~-----------------------------------tlick~daPv~  301 (735)
T KOG0308|consen  257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS-----------------------------------TLICKEDAPVL  301 (735)
T ss_pred             ceEEEeeCCCcceEEecCCCCcEEecccCCchhh-----------------------------------eEeecCCCchh
Confidence            8999999999999999999999999999886411                                   01112233455


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          385 IVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       385 ~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .+..+.+.+-+-+++.|+.|+-|...+
T Consensus       302 ~l~~~~~~~~~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  302 KLHLHEHDNSVWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             hhhhccccCCceeeeccccceecCCcc
Confidence            566555445556677788888877655

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.5e-25  Score=179.88  Aligned_cols=238  Identities=13%  Similarity=0.188  Sum_probs=197.9

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCc---cEEE--eCCeEEEEE
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDR---IIVV--LEQKIFVYN  200 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~---~~~~--~d~~i~i~d  200 (432)
                      .|...+.+++.+  +.++++|+.|     .+|+|||+.+...+..+- |.+.|+++.|.+..   .++.  .||.|.+|+
T Consensus        41 aH~~sitavAVs--~~~~aSGssD-----etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   41 AHAGSITALAVS--GPYVASGSSD-----ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             ccccceeEEEec--ceeEeccCCC-----CcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            688888888764  6899999999     999999999998888877 99999999999876   4444  399999999


Q ss_pred             cCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCC
Q 014007          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (432)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg  280 (432)
                      .....++..++.|.+.|+.++++|.++. ++..  +.|+.+++||+-.++......-....+.+.|+|.|.+++.+..++
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KL-ALsV--g~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~  190 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSGKL-ALSV--GGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK  190 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCCce-EEEE--cCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence            9999999999999999999999999863 4443  369999999998876655444444455699999999999988886


Q ss_pred             ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEe
Q 014007          281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK  360 (432)
Q Consensus       281 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (432)
                        |-+|.+.+.+....+.   .+..+.++.|- ++..|++|++|+.|.+||.....+                       
T Consensus       191 --i~i~q~d~A~v~~~i~---~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~-----------------------  241 (362)
T KOG0294|consen  191 --IDIYQLDNASVFREIE---NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP-----------------------  241 (362)
T ss_pred             --EEEEecccHhHhhhhh---ccccceeeeec-CCceEEEecCCceEEEeccCCCcc-----------------------
Confidence              8999998888877776   33567788885 567899999999999999998553                       


Q ss_pred             ecccceeecceeeEEEEecCCCceEEEE--ccCCCEEEEEecCCeEEEEEecCCCCC
Q 014007          361 GVLPKYFSSEWSVAQFRLVEGSPYIVAF--GHQKNTVVILGMDGSFYRCQFDPVNGG  415 (432)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~v~iw~~~~~~~~  415 (432)
                                  ...+.+|+.+|-.+.+  .|++.+|++++.||.|++|+++..+.+
T Consensus       242 ------------~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  242 ------------LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             ------------ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence                        3457789999999985  457889999999999999999887543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=2.7e-25  Score=200.61  Aligned_cols=276  Identities=16%  Similarity=0.241  Sum_probs=223.2

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEE-EeeeC-CeEEEecCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVE-MLFRC-NILALVGGGPDPQYPL  155 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~~~s~~~d~~~~~  155 (432)
                      ..+.+|...|..+++.+.. +++.++ |+++++|+-...+......+. ++...+.. ++|.+ +.-.++.|+.|     
T Consensus         8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D-----   80 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMD-----   80 (745)
T ss_pred             EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeeccc-----
Confidence            4678899999999887665 566666 666999996555544434554 45555544 66653 44457788888     


Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      +.|.+|......++..+. |...|.+++...++.++.  .|.++++|.+  +++...+++|...|..+..-|.+  .+ +
T Consensus        81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~--~~-v  155 (745)
T KOG0301|consen   81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN--TY-V  155 (745)
T ss_pred             ceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC--cE-E
Confidence            999999999999999999 999999999999998555  3999999985  55667789999999988888887  23 3


Q ss_pred             eecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s  312 (432)
                       +|+.|..|++|.- ...++++.+|..-|+.+++-+++. ++++++||. |++|++ +|+++.++.+  |..-+++++..
T Consensus       156 -TgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~  228 (745)
T KOG0301|consen  156 -TGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMA  228 (745)
T ss_pred             -eccCcceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEec
Confidence             4668999999986 566788999999999999998865 679999999 999998 8888888875  77899999988


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  392 (432)
                      .++..++++++|++++||+...-                                     .+.+..+...|+++.+-++|
T Consensus       229 ~~~~~Ivs~gEDrtlriW~~~e~-------------------------------------~q~I~lPttsiWsa~~L~Ng  271 (745)
T KOG0301|consen  229 LSDGLIVSTGEDRTLRIWKKDEC-------------------------------------VQVITLPTTSIWSAKVLLNG  271 (745)
T ss_pred             CCCCeEEEecCCceEEEeecCce-------------------------------------EEEEecCccceEEEEEeeCC
Confidence            88899999999999999998722                                     33455666689999988776


Q ss_pred             CEEEEEecCCeEEEEEecC
Q 014007          393 NTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       393 ~~l~~~~~dg~v~iw~~~~  411 (432)
                      . |++|+.||.||||..+.
T Consensus       272 D-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  272 D-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             C-EEEeccCceEEEEEecc
Confidence            6 56799999999999874

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=2.1e-25  Score=190.73  Aligned_cols=233  Identities=18%  Similarity=0.295  Sum_probs=199.1

Q ss_pred             eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCe
Q 014007          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLK  205 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~  205 (432)
                      ..+.++...+....+.+|+.|     ..+.++|...++.+..++ |...|+.+.++++...++.   |..|+||......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d-----~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGED-----KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCC-----CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence            456666666666788899998     999999999999999999 9999999999999877773   8899999998888


Q ss_pred             eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccC---CceeEEEEcCCCCEEEEEcCCCce
Q 014007          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTKGTL  282 (432)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~dg~~  282 (432)
                      .......|..+|+.+..+|.|++++-+   +.|+...+.|++++.......++   -.+++.+|+|||.+|.+|..|+. 
T Consensus       295 ~~~~~~~h~~~V~~ls~h~tgeYllsA---s~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~-  370 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHPTGEYLLSA---SNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV-  370 (506)
T ss_pred             CccccccccccceeeeeccCCcEEEEe---cCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce-
Confidence            888888999999999999999976543   48999999999997765554443   45899999999999999999999 


Q ss_pred             EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeec
Q 014007          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV  362 (432)
Q Consensus       283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (432)
                      |+|||+.++..+..|.+  |.++|..++|+.+|-||+++++|+.|++||++..+..+.+                     
T Consensus       371 vkiwdlks~~~~a~Fpg--ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~---------------------  427 (506)
T KOG0289|consen  371 VKIWDLKSQTNVAKFPG--HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI---------------------  427 (506)
T ss_pred             EEEEEcCCccccccCCC--CCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee---------------------
Confidence            99999999998888886  7799999999999999999999999999999998754432                     


Q ss_pred             ccceeecceeeEEEEecC-CCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          363 LPKYFSSEWSVAQFRLVE-GSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                                    ...+ ..|.++.|.+.|.+|+.++.|=.||+++
T Consensus       428 --------------~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  428 --------------QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             --------------eccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence                          2222 2588999999999999998887777655

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=1.8e-23  Score=187.88  Aligned_cols=273  Identities=14%  Similarity=0.133  Sum_probs=193.9

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (432)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~  175 (432)
                      .++++++ ++.|++||+.+++..  ..+.  ....+..+.|++++..+ +++..+     +.|++||..+++.+..+...
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~--~~~~--~~~~~~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~   72 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVT--RTFP--VGQRPRGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSG   72 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceE--EEEE--CCCCCCceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCC
Confidence            4667766 555999999877654  3444  22335678899998754 566666     89999999999887777644


Q ss_pred             CceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007          176 SEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (432)
Q Consensus       176 ~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~  251 (432)
                      ..+..++|+|++..++ .   ++.|++||+.+++.+..+... .....++++|++..+++..  .....+.+||..+...
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~--~~~~~~~~~d~~~~~~  149 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTS--ETTNMAHFIDTKTYEI  149 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEe--cCCCeEEEEeCCCCeE
Confidence            4467889999988665 2   689999999988877766532 3356799999998655432  2334577789887554


Q ss_pred             eeeeccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCC---C--cCceEEEEECCCCCEEEEE-eCC
Q 014007          252 KFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGA---D--RAEIYSLAFSSNAQWLAVS-SDK  324 (432)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~---~--~~~i~~~~~s~~~~~l~~~-~~d  324 (432)
                      .........+.+++|+|+|++|+++ ..++. |++||+.+++.+..+....   +  ......++|+|++++++++ +.+
T Consensus       150 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~  228 (300)
T TIGR03866       150 VDNVLVDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA  228 (300)
T ss_pred             EEEEEcCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence            3322334456789999999988655 46888 9999999998877765321   1  1124578999999986554 457


Q ss_pred             CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe-cCCe
Q 014007          325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG-MDGS  403 (432)
Q Consensus       325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~  403 (432)
                      +.+.+||+++++..                                    ....+.+.+.+++|+|+|++|++++ .+|.
T Consensus       229 ~~i~v~d~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  272 (300)
T TIGR03866       229 NRVAVVDAKTYEVL------------------------------------DYLLVGQRVWQLAFTPDEKYLLTTNGVSND  272 (300)
T ss_pred             CeEEEEECCCCcEE------------------------------------EEEEeCCCcceEEECCCCCEEEEEcCCCCe
Confidence            78999999876621                                    1112344688999999999998864 5999


Q ss_pred             EEEEEecCCCCCcceEee
Q 014007          404 FYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       404 v~iw~~~~~~~~~~~~~~  421 (432)
                      |++|+++.  ++.+..++
T Consensus       273 i~v~d~~~--~~~~~~~~  288 (300)
T TIGR03866       273 VSVIDVAA--LKVIKSIK  288 (300)
T ss_pred             EEEEECCC--CcEEEEEE
Confidence            99998754  44445444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.1e-25  Score=190.82  Aligned_cols=272  Identities=13%  Similarity=0.135  Sum_probs=208.5

Q ss_pred             CCc-EEEEEcCCCeeEEEeecccCcceeEEEEe-eeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE-EeecCCceEEE
Q 014007          105 DHG-FRIYNCDPFREIFRRDFERGGGIGVVEML-FRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG-ELSFRSEVRSV  181 (432)
Q Consensus       105 ~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~-~~~~~~~v~~~  181 (432)
                      |.. +.+||+.++...  .+++++......++. ..+  .+++++...    ...|.+|.+....... .+..+++|.++
T Consensus        16 d~~~~~~~dl~TGt~~--~~ykg~~~a~~~sl~~l~~--~yllsaq~~----rp~l~vw~i~k~~~~~q~~v~Pg~v~al   87 (476)
T KOG0646|consen   16 DPINCIVWDLRTGTSL--LQYKGSYLAQAASLTALNN--EYLLSAQLK----RPLLHVWEILKKDQVVQYIVLPGPVHAL   87 (476)
T ss_pred             CCcceeEEecCCCcee--EEecCcccccchhhhhhch--hheeeeccc----CccccccccCchhhhhhhcccccceeee
Confidence            444 899999988766  334322111111221 122  333333321    1689999987765544 33378999999


Q ss_pred             EEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC----------
Q 014007          182 KLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----------  248 (432)
Q Consensus       182 ~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~----------  248 (432)
                      +-+|+|.+++.   .+.|++|.+.+|.++..+..|...++++.|+-|+..++   +|+.||.|.+|++..          
T Consensus        88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~ii---TgskDg~V~vW~l~~lv~a~~~~~~  164 (476)
T KOG0646|consen   88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHII---TGSKDGAVLVWLLTDLVSADNDHSV  164 (476)
T ss_pred             ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEE---ecCCCccEEEEEEEeecccccCCCc
Confidence            99999999985   68999999999999999999999999999999998654   356999999998753          


Q ss_pred             CceeeeeccCCceeEEEEcCC--CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe
Q 014007          249 KRTKFIMAHDSRIACFALTQD--GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT  326 (432)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  326 (432)
                      .....+..|.-+|+.+...+.  ..+|++++.|.+ +++||+..+.++.++.   .+..+.+++.+|-++.+++|+.+|.
T Consensus       165 ~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~g~LLlti~---fp~si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  165 KPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSLGVLLLTIT---FPSSIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             cceeeeccCcceeEEEEecCCCccceEEEecCCce-EEEEEeccceeeEEEe---cCCcceeEEEcccccEEEecCCcce
Confidence            445678899999999988764  358999999999 9999999999999888   5588999999999999999999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc-eeecceeeEEEEecCC--CceEEEEccCCCEEEEEecCCe
Q 014007          327 VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK-YFSSEWSVAQFRLVEG--SPYIVAFGHQKNTVVILGMDGS  403 (432)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~  403 (432)
                      |.+.++........                    ++..+ +......+..+.+|.+  .|++++.+-||..|++|+.||.
T Consensus       241 I~~~~~~~~~~~~~--------------------~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~  300 (476)
T KOG0646|consen  241 IFQNLLFKLSGQSA--------------------GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK  300 (476)
T ss_pred             EEeeehhcCCcccc--------------------cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC
Confidence            99999876542110                    00000 0112223557888988  9999999999999999999999


Q ss_pred             EEEEEecC
Q 014007          404 FYRCQFDP  411 (432)
Q Consensus       404 v~iw~~~~  411 (432)
                      |.||++-.
T Consensus       301 VcvWdi~S  308 (476)
T KOG0646|consen  301 VCVWDIYS  308 (476)
T ss_pred             EEEEecch
Confidence            99999854

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=4.7e-24  Score=199.96  Aligned_cols=217  Identities=10%  Similarity=0.120  Sum_probs=166.1

Q ss_pred             cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCc--------eeEEee-cCC
Q 014007          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSR--------CIGELS-FRS  176 (432)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~--------~~~~~~-~~~  176 (432)
                      .|++|+......  ...+. +|...|.++.|+|+ +..+++++.|     ++|++||+.++.        ++..+. |..
T Consensus        55 vI~L~~~~r~~~--v~~L~-gH~~~V~~lafsP~~~~lLASgS~D-----gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         55 AIRLENQMRKPP--VIKLK-GHTSSILDLQFNPCFSEILASGSED-----LTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             EEEeeecCCCce--EEEEc-CCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCCccccccccceEEeecCCC
Confidence            389998765433  35565 78999999999996 7899999999     999999997642        233455 889


Q ss_pred             ceEEEEEecCccEE-E---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-e
Q 014007          177 EVRSVKLRRDRIIV-V---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-T  251 (432)
Q Consensus       177 ~v~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~  251 (432)
                      .|.+++|+|++..+ +   .|++|++||+++++.+..+. +...+.+++|+++|..+  ++ ++.|+.|+|||++++. +
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL--at-~s~D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL--SG-TCVGKHMHIIDPRKQEIA  202 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE--EE-EecCCEEEEEECCCCcEE
Confidence            99999999988654 3   28999999999988777775 45678899999998854  33 3479999999999854 4


Q ss_pred             eeeeccCCceeE-----EEEcCCCCEEEEEcCCC----ceEEEEECCC-CceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007          252 KFIMAHDSRIAC-----FALTQDGQLLATSSTKG----TLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (432)
Q Consensus       252 ~~~~~~~~~i~~-----~~~sp~~~~l~~~~~dg----~~i~vwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  321 (432)
                      ..+.+|.+.+.+     ..|++++.+|++++.|+    . |+|||+++ .+++..+....+.+.+......++|.++++|
T Consensus       203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~-VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG  281 (568)
T PTZ00420        203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE-MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG  281 (568)
T ss_pred             EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE-EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence            567788876543     33568989999988764    7 99999995 5667666543333344444445678999999


Q ss_pred             eCCCeEEEEEecCCC
Q 014007          322 SDKGTVHVFNLKVNS  336 (432)
Q Consensus       322 ~~dg~i~iwd~~~~~  336 (432)
                      +.|+.|++|++..+.
T Consensus       282 kGD~tIr~~e~~~~~  296 (568)
T PTZ00420        282 KGDGNCRYYQHSLGS  296 (568)
T ss_pred             ECCCeEEEEEccCCc
Confidence            999999999997653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1e-23  Score=183.84  Aligned_cols=288  Identities=11%  Similarity=0.114  Sum_probs=221.8

Q ss_pred             cccCCCCCCCeEEEEEcCC--CCEEEEEcCCc---EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe-EEEecCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQD--HGCFAAGTDHG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDP  151 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~---i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~  151 (432)
                      ..++..-...|.|++|++-  |.+|..-.++.   +.+||.......  ...+ ..+..+....|+|.. ..+++.+.  
T Consensus       147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~--~~vk-~sne~v~~a~FHPtd~nliit~Gk--  221 (626)
T KOG2106|consen  147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKL--GPVK-TSNEVVFLATFHPTDPNLIITCGK--  221 (626)
T ss_pred             eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhcc--Ccce-eccceEEEEEeccCCCcEEEEeCC--
Confidence            3455567889999999973  45666555332   899998765543  2222 355677888898854 56666665  


Q ss_pred             CCCCCeEEEEeCCCCceeEEe---e--cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEec
Q 014007          152 QYPLNKVMIWDDHQSRCIGEL---S--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (432)
Q Consensus       152 ~~~~~~v~iwd~~~~~~~~~~---~--~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (432)
                          +.+.+|+.+.+...+..   +  .+..|.+++|.++|..+.  ++|.|.||+..+.+..+....|.+.|.++++-.
T Consensus       222 ----~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr  297 (626)
T KOG2106|consen  222 ----GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR  297 (626)
T ss_pred             ----ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec
Confidence                89999999888655543   3  357799999999999998  589999999988887777779999999999998


Q ss_pred             CCCcEEEEeecCCCCcEEEEEccCCce-----------------------------------------eeeeccCCceeE
Q 014007          225 GVGSLVLVCPGLQKGQVRVEHYASKRT-----------------------------------------KFIMAHDSRIAC  263 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i~d~~~~~~-----------------------------------------~~~~~~~~~i~~  263 (432)
                      +|.   +.+ |+.|..|..||-.-++.                                         ....+|......
T Consensus       298 ~Gt---llS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg  373 (626)
T KOG2106|consen  298 DGT---LLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG  373 (626)
T ss_pred             Ccc---Eee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceee
Confidence            885   333 77999999998432110                                         223467778889


Q ss_pred             EEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCC
Q 014007          264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEP  343 (432)
Q Consensus       264 ~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  343 (432)
                      ++.+|+...+++++.|+. +++|+  ..+++....   ...+..++.|+|.| .+|.|...|...+.|.++..       
T Consensus       374 la~hps~~q~~T~gqdk~-v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~-------  439 (626)
T KOG2106|consen  374 LATHPSKNQLLTCGQDKH-VRLWN--DHKLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD-------  439 (626)
T ss_pred             EEcCCChhheeeccCcce-EEEcc--CCceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccce-------
Confidence            999999999999999999 99998  566665555   34788999999999 99999999999999999865       


Q ss_pred             CCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007          344 RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY  422 (432)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~  422 (432)
                                                   +-+++....++++++|+|+|.+||.|+.|+.|+||.++.. |....++..
T Consensus       440 -----------------------------lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~-g~~y~r~~k  488 (626)
T KOG2106|consen  440 -----------------------------LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN-GRKYSRVGK  488 (626)
T ss_pred             -----------------------------eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC-CcEEEEeee
Confidence                                         2234444678999999999999999999999999999764 444444433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=6.3e-25  Score=205.13  Aligned_cols=239  Identities=20%  Similarity=0.324  Sum_probs=203.6

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      .+.+|.+.|.+++|..-+.+|++|+ |.++++||+.++++.  ..+. +|...+.++...+  ..+++|+.|     .+|
T Consensus       244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~--~~l~-gh~stv~~~~~~~--~~~~sgs~D-----~tV  313 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT--HSLQ-GHTSSVRCLTIDP--FLLVSGSRD-----NTV  313 (537)
T ss_pred             eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE--EEec-CCCceEEEEEccC--ceEeeccCC-----ceE
Confidence            3889999999999998778899998 777999999999887  6665 7888888877654  466778888     999


Q ss_pred             EEEeCCCCceeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      ++|++.++.++..+. |.++|.++.++ ...++.  .|++|++||+.++++++.+.+|...|.++.+... +.  +. +|
T Consensus       314 kVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~--~~-Sg  388 (537)
T KOG0274|consen  314 KVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NR--LL-SG  388 (537)
T ss_pred             EEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ce--EE-ee
Confidence            999999999999999 99999999998 333333  3999999999999999999999999988877665 32  23 46


Q ss_pred             CCCCcEEEEEccCC--ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007          236 LQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       236 ~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~  313 (432)
                      +.|+.|++||+++.  .+..+.+|..-+..+.+  .+++|++++.|++ |++||..++++++++... |...|..+++. 
T Consensus       389 s~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~-  463 (537)
T KOG0274|consen  389 SLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG-  463 (537)
T ss_pred             eeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC-
Confidence            79999999999997  67788899998877665  6789999999999 999999999999999964 45788888886 


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          314 NAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       314 ~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                       ...+++++.||++++||+++++...
T Consensus       464 -~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  464 -KEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             -cceEEEEecCCeeEEEecccCchhh
Confidence             4678888999999999999988543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=205.05  Aligned_cols=280  Identities=14%  Similarity=0.215  Sum_probs=217.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEE--eecc--cCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEE
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR--RDFE--RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~--~~~~--~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~  159 (432)
                      .....+|..+++-..+++++...++||.+++......  ..+.  ......+.++.|.. ...++++++..     |.|.
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n-----G~i~  113 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN-----GVIS  113 (839)
T ss_pred             ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC-----CcEE
Confidence            3456778888998899999888899998865432211  1111  01223444566653 35678888888     9999


Q ss_pred             EEeCCC---CceeEEee-cCCceEEEEEecCccEE-Ee---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          160 IWDDHQ---SRCIGELS-FRSEVRSVKLRRDRIIV-VL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       160 iwd~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~-~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      +||+..   .+.+..|. |...+.++.|++..-.+ ++   ||+|++||++..+...++......++.+.|+|.....+.
T Consensus       114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~  193 (839)
T KOG0269|consen  114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFA  193 (839)
T ss_pred             EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEE
Confidence            999987   45566676 99999999999865444 43   999999999998888888888889999999998866554


Q ss_pred             EeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce--EEEEEeCCCcCceE
Q 014007          232 VCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIY  307 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~--~~~~~~~~~~~~i~  307 (432)
                      +  +.+.|.+++||++.  .....+.+|.++|.|+.|+|++.+||||+.|+. |+|||+.+++.  +.++.   ...++.
T Consensus       194 s--~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tiapv~  267 (839)
T KOG0269|consen  194 S--IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIAPVG  267 (839)
T ss_pred             E--ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---ecceee
Confidence            3  46889999999998  445667899999999999999999999999999 99999976543  44555   347899


Q ss_pred             EEEECCCCCE-EEEEe--CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007          308 SLAFSSNAQW-LAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (432)
Q Consensus       308 ~~~~s~~~~~-l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  384 (432)
                      .+.|-|..++ ||+++  .|-.|+|||++..-                          +|        .+++..|...++
T Consensus       268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY--------------------------IP--------~~t~~eH~~~vt  313 (839)
T KOG0269|consen  268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRPY--------------------------IP--------YATFLEHTDSVT  313 (839)
T ss_pred             eeeeccCccchhhhhhccccceEEEEeecccc--------------------------cc--------ceeeeccCcccc
Confidence            9999998765 55555  68899999998763                          33        667888999999


Q ss_pred             EEEEcc-CCCEEEEEecCCeEEEEEe
Q 014007          385 IVAFGH-QKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       385 ~~~~s~-~~~~l~~~~~dg~v~iw~~  409 (432)
                      .++|-. |-..|.+++.||.|..-.+
T Consensus       314 ~i~W~~~d~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  314 GIAWDSGDRINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             ceeccCCCceeeEeecCccHHHHhhh
Confidence            999976 5667889999998876444

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.9e-25  Score=177.38  Aligned_cols=245  Identities=16%  Similarity=0.211  Sum_probs=198.4

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC---ceeEEee-cCCceEEEEEec--CccEEEe---CCeEE
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS-FRSEVRSVKLRR--DRIIVVL---EQKIF  197 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~---~~~~~~~-~~~~v~~~~~~~--~~~~~~~---d~~i~  197 (432)
                      .|...|.+...+--+..|++++.|     ++|+|+.++..   +.+.++. |.++|..++|..  -|.++++   ||.|.
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD-----~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSD-----GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCC-----ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            577777777777778899999999     99999998765   4567777 999999999986  6888884   99999


Q ss_pred             EEEcCCCe--eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC----ceeeeeccCCceeEEEEcCC--
Q 014007          198 VYNFADLK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQD--  269 (432)
Q Consensus       198 i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~~~i~~~~~sp~--  269 (432)
                      ||.-..++  .......|...+++++|.|++-.+.|+| ++.||.|.|.+.+..    ..+....|.-.|++++|.|-  
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEE-eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence            99977763  3445567889999999999999998887 458999999998874    23456789999999999985  


Q ss_pred             -C-----------CEEEEEcCCCceEEEEECCCCc--eEEEEEeCCCcCceEEEEECCCC----CEEEEEeCCCeEEEEE
Q 014007          270 -G-----------QLLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNA----QWLAVSSDKGTVHVFN  331 (432)
Q Consensus       270 -~-----------~~l~~~~~dg~~i~vwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~iwd  331 (432)
                       |           +.|++|+.|.. |+||+..+++  .-.++.  .|...|+.++|.|.-    .+||+++.||+|.||-
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~--~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLE--GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             CccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhh--hcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence             4           57999999999 9999988763  233455  377999999999964    4899999999999998


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .+...                                +.|....++.....++.+.||..|+.|++++.|+.|.+|.=+.
T Consensus       240 ~~~e~--------------------------------e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  240 KDEEY--------------------------------EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             ecCcc--------------------------------CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            87322                                1222333444456799999999999999999999999998654


Q ss_pred             C
Q 014007          412 V  412 (432)
Q Consensus       412 ~  412 (432)
                      +
T Consensus       288 ~  288 (299)
T KOG1332|consen  288 D  288 (299)
T ss_pred             C
Confidence            3

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=1.6e-24  Score=176.64  Aligned_cols=294  Identities=13%  Similarity=0.168  Sum_probs=222.5

Q ss_pred             CCCcccCCCCCCCeEEEEEcC-CCCEEEEEcCC-cEEEEEcCCCee------------EEEeecccCcceeEEEEeeeC-
Q 014007           75 SPAESTSSSPPPTLLHISFNQ-DHGCFAAGTDH-GFRIYNCDPFRE------------IFRRDFERGGGIGVVEMLFRC-  139 (432)
Q Consensus        75 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~-~i~iw~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~-  139 (432)
                      .....+...|.+.|+++...+ .|+++++|+.+ .|.+||++....            ...+.-+.+|...|.++.|-| 
T Consensus        33 n~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~  112 (397)
T KOG4283|consen   33 NNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI  112 (397)
T ss_pred             cCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence            345567788999999999987 68899998844 499999964331            111222356788888888876 


Q ss_pred             CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc---cEEEe---CCeEEEEEcCCCeeeEEEeec
Q 014007          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR---IIVVL---EQKIFVYNFADLKLLHQIETI  213 (432)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~---d~~i~i~d~~~~~~~~~~~~~  213 (432)
                      |.-.+.+++-|     .++++||..+.+....|+.++.|++-+++|-.   .+++.   +-.|++.|+..|..-+.+.+|
T Consensus       113 DtGmFtssSFD-----htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH  187 (397)
T KOG4283|consen  113 DTGMFTSSSFD-----HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH  187 (397)
T ss_pred             cCceeeccccc-----ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc
Confidence            56677888888     99999999999999999999999999999842   34442   668999999999999999999


Q ss_pred             cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--Cceee--------------eeccCCceeEEEEcCCCCEEEEEc
Q 014007          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKF--------------IMAHDSRIACFALTQDGQLLATSS  277 (432)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~--------------~~~~~~~i~~~~~sp~~~~l~~~~  277 (432)
                      .+.|..+.|+|..+.+ ++ +|+.||.|++||++.  +....              -.+|.+.+..++|+.+|.++++++
T Consensus       188 r~~vlaV~Wsp~~e~v-La-tgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g  265 (397)
T KOG4283|consen  188 RDGVLAVEWSPSSEWV-LA-TGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG  265 (397)
T ss_pred             cCceEEEEeccCceeE-EE-ecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence            9999999999988754 34 577999999999986  22222              235778899999999999999999


Q ss_pred             CCCceEEEEECCCCceEE-EEEeCCCcC---ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007          278 TKGTLVRIFNTLDGTLLQ-EVRRGADRA---EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT  353 (432)
Q Consensus       278 ~dg~~i~vwd~~~~~~~~-~~~~~~~~~---~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (432)
                      .|.. +++|+..+|+... .+..-.|..   .-..+. +-+...++---.++.+.++.+-.+..                
T Consensus       266 td~r-~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~----------------  327 (397)
T KOG4283|consen  266 TDDR-IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSF----------------  327 (397)
T ss_pred             Cccc-eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceE----------------
Confidence            9999 9999998875421 111101111   111122 33344444444568888888877762                


Q ss_pred             CCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                                         +..++.|-..|.+.+|.|+=+.+.+|..|+.++.|...+.
T Consensus       328 -------------------ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l~  367 (397)
T KOG4283|consen  328 -------------------VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPALK  367 (397)
T ss_pred             -------------------EEeeecccceeeEEeecCchhhhhccccCCcccccccccc
Confidence                               4456777778999999999999999999999999987443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=8.4e-25  Score=184.11  Aligned_cols=238  Identities=12%  Similarity=0.137  Sum_probs=193.2

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEec-Ccc---EEEe--CCeEEEEE
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRI---IVVL--EQKIFVYN  200 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~---~~~~--d~~i~i~d  200 (432)
                      |...|.++.-.  ...+++|+.|     |.+++|| ..|+.+..+. |.++|.+++|.. +..   ++.+  |.++++|.
T Consensus       104 hdDWVSsv~~~--~~~IltgsYD-----g~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~  175 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYD-----GTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK  175 (423)
T ss_pred             chhhhhhhccc--CceEEEeecC-----CeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence            66666666555  6789999999     9999999 5688888887 999999888753 322   3432  88999999


Q ss_pred             cCCCee----eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--------------------------Cc
Q 014007          201 FADLKL----LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--------------------------KR  250 (432)
Q Consensus       201 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--------------------------~~  250 (432)
                      ++.++.    ++.-++|...|.++...+++..++   +|+.|..|.+|+...                          .+
T Consensus       176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~---SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P  252 (423)
T KOG0313|consen  176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFC---SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP  252 (423)
T ss_pred             ecCchhhhhHHhHhcccccceeEEEecCCCCeEE---eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence            887643    333458999999999999987543   567999999999322                          01


Q ss_pred             eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007          251 TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (432)
Q Consensus       251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  330 (432)
                      +..+.+|..+|.++.|++ ...+++++.|.+ |+.||+.++++.-++..   ...+.++..+|..++|++|+.|..+++|
T Consensus       253 ~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHT-Ik~WDletg~~~~~~~~---~ksl~~i~~~~~~~Ll~~gssdr~irl~  327 (423)
T KOG0313|consen  253 LVTLEGHTEPVSSVVWSD-ATVIYSVSWDHT-IKVWDLETGGLKSTLTT---NKSLNCISYSPLSKLLASGSSDRHIRLW  327 (423)
T ss_pred             eEEecccccceeeEEEcC-CCceEeecccce-EEEEEeecccceeeeec---CcceeEeecccccceeeecCCCCceeec
Confidence            345779999999999998 567899999999 99999999999988884   4789999999999999999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc-CCCEEEEEecCCeEEEEEe
Q 014007          331 NLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH-QKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       331 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~  409 (432)
                      |.+++...                                -...++.+|.+.|.++.|+| +...|++|+.||++++||+
T Consensus       328 DPR~~~gs--------------------------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv  375 (423)
T KOG0313|consen  328 DPRTGDGS--------------------------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV  375 (423)
T ss_pred             CCCCCCCc--------------------------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence            99987511                                01346889999999999999 5557889999999999999


Q ss_pred             cCCC
Q 014007          410 DPVN  413 (432)
Q Consensus       410 ~~~~  413 (432)
                      ....
T Consensus       376 RS~k  379 (423)
T KOG0313|consen  376 RSTK  379 (423)
T ss_pred             ccCC
Confidence            6643

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=5.9e-25  Score=189.37  Aligned_cols=251  Identities=13%  Similarity=0.167  Sum_probs=193.7

Q ss_pred             CCcccCCCCCCCeEEEEEcCCCCE-EEEEcCCc-EEEEEcCCCeeE--------EEeecccCcceeEEEEeeeCCe-EEE
Q 014007           76 PAESTSSSPPPTLLHISFNQDHGC-FAAGTDHG-FRIYNCDPFREI--------FRRDFERGGGIGVVEMLFRCNI-LAL  144 (432)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~-i~iw~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~~  144 (432)
                      ........|.+.|+.+++.|.... +|+++.++ |.|||.......        ....+. +|...-.+++|++.. -.+
T Consensus       115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~L  193 (422)
T KOG0264|consen  115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTL  193 (422)
T ss_pred             eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeE
Confidence            344566779999999999998765 55556666 999998532221        112454 566667778888753 567


Q ss_pred             ecCCCCCCCCCCeEEEEeCCCCc-------eeEEee-cCCceEEEEEecCccEEE-e---CCeEEEEEcC--CCeeeEEE
Q 014007          145 VGGGPDPQYPLNKVMIWDDHQSR-------CIGELS-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFA--DLKLLHQI  210 (432)
Q Consensus       145 ~s~~~d~~~~~~~v~iwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~--~~~~~~~~  210 (432)
                      ++++.|     ++|++||+....       ....+. |...|..++|++-...++ +   |+.+.|||++  +.++.+..
T Consensus       194 ls~~~d-----~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~  268 (422)
T KOG0264|consen  194 LSGSDD-----HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV  268 (422)
T ss_pred             eeccCC-----CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence            788888     999999987542       233445 899999999998544333 2   8899999999  56777788


Q ss_pred             eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEE
Q 014007          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd  287 (432)
                      ..|...+.+++|+|.+..+ +|+ |+.|++|.+||+++  .++..+.+|...|.+|.|+|. ...||+++.|+. +.|||
T Consensus       269 ~ah~~~vn~~~fnp~~~~i-lAT-~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWD  345 (422)
T KOG0264|consen  269 KAHSAEVNCVAFNPFNEFI-LAT-GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWD  345 (422)
T ss_pred             cccCCceeEEEeCCCCCce-EEe-ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEe
Confidence            8999999999999998754 454 66899999999998  667889999999999999995 568899999999 99999


Q ss_pred             CCCCc------------eEEEEEeCCCcCceEEEEECCCCCE-EEEEeCCCeEEEEEecCC
Q 014007          288 TLDGT------------LLQEVRRGADRAEIYSLAFSSNAQW-LAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       288 ~~~~~------------~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~  335 (432)
                      +..-.            .-..|.-++|...|..+.|+|+..+ |++.++|+.+.||+....
T Consensus       346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence            86421            1112444458899999999998775 667889999999998743

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=9.1e-25  Score=179.68  Aligned_cols=275  Identities=14%  Similarity=0.198  Sum_probs=204.7

Q ss_pred             eEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007           88 LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (432)
Q Consensus        88 v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~  166 (432)
                      -.|+.||+.|.+||+|..+| |.|||+.+....  +.+. +|..+|.+++|++++..|++++.|     ..|.+||+..|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--r~ls-aH~~pi~sl~WS~dgr~LltsS~D-----~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--RMLS-AHVRPITSLCWSRDGRKLLTSSRD-----WSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh--hhhh-ccccceeEEEecCCCCEeeeecCC-----ceeEEEeccCC
Confidence            78999999999999999666 999999988743  5554 899999999999999999999999     99999999999


Q ss_pred             ceeEEeecCCceEEEEEecC--ccEEE--eCCeEEEEEcCCCeeeEEEee-ccC----CcceEEEecCCCcEEEEeecCC
Q 014007          167 RCIGELSFRSEVRSVKLRRD--RIIVV--LEQKIFVYNFADLKLLHQIET-IAN----PKGLCAVSQGVGSLVLVCPGLQ  237 (432)
Q Consensus       167 ~~~~~~~~~~~v~~~~~~~~--~~~~~--~d~~i~i~d~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~g~~  237 (432)
                      .+++.+.+.++|+...|+|.  .+.++  .+..-.+.++..++.. .+.. ...    ......|.+.|++++   +|..
T Consensus        98 s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIi---tGts  173 (405)
T KOG1273|consen   98 SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYII---TGTS  173 (405)
T ss_pred             CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEE---EecC
Confidence            99999999999999999984  44444  2554555555442211 1111 011    112235777777655   3567


Q ss_pred             CCcEEEEEccCCc-eeeeeccC-CceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-------c--eEEEEEeCCCcCce
Q 014007          238 KGQVRVEHYASKR-TKFIMAHD-SRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-------T--LLQEVRRGADRAEI  306 (432)
Q Consensus       238 d~~i~i~d~~~~~-~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-------~--~~~~~~~~~~~~~i  306 (432)
                      .|.+.++|..+.+ +..++-.. ..|..+.++..|++|++-+.|+. ||.|+++.-       +  ..+++..-.++..-
T Consensus       174 KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv-IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W  252 (405)
T KOG1273|consen  174 KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV-IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW  252 (405)
T ss_pred             cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce-EEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence            8999999998843 44444444 78999999999999999999999 999998631       1  11222211122455


Q ss_pred             EEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC-CCce
Q 014007          307 YSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPY  384 (432)
Q Consensus       307 ~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~  384 (432)
                      .+++||.+|.|++.++ ....++||.-..|..++                                   .+.+.. ....
T Consensus       253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVK-----------------------------------ILhG~kgE~l~  297 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVK-----------------------------------ILHGTKGEELL  297 (405)
T ss_pred             hheeecCCccEEEeccccceeEEEEecCCcceee-----------------------------------eecCCchhhee
Confidence            7889999999998887 45679999999887433                                   344444 3466


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          385 IVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       385 ~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .+.|+|-...+++. ..|.|+||....
T Consensus       298 DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  298 DVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             ecccccceeeeeec-cCCceEEEEeec
Confidence            78999987888777 789999998744

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=5.8e-24  Score=171.08  Aligned_cols=231  Identities=15%  Similarity=0.170  Sum_probs=196.4

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA  202 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~  202 (432)
                      +|..+++.+.|+.+|.+|.+++.|     .+..+|-..+|+.+.++. |.+.|+++.++.+...+++   |.++++||++
T Consensus         8 GHERplTqiKyN~eGDLlFscaKD-----~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    8 GHERPLTQIKYNREGDLLFSCAKD-----STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cCccccceEEecCCCcEEEEecCC-----CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            799999999999999999999999     999999988999999999 9999999999999888883   8999999999


Q ss_pred             CCeeeEEEeeccCCcceEEEecCCCcEEEEeec--CCCCcEEEEEccC--------CceeeeeccCCceeEEEEcCCCCE
Q 014007          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYAS--------KRTKFIMAHDSRIACFALTQDGQL  272 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~sp~~~~  272 (432)
                      +|+++..++. ..++..+.|+++|+.+++.+--  +..+.|.++|++.        .+...+..+.+.++.+-|.|-+++
T Consensus        83 tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   83 TGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             CCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence            9999999864 5678899999999866544310  2457899999984        235677788899999999999999


Q ss_pred             EEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (432)
Q Consensus       273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (432)
                      |++|.+||. |.+||+++|+.+..-.. .|...|+.|++++|..++++++.|.+-++||+.+...++.+           
T Consensus       162 ii~Ghe~G~-is~~da~~g~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty-----------  228 (327)
T KOG0643|consen  162 IIAGHEDGS-ISIYDARTGKELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY-----------  228 (327)
T ss_pred             EEEecCCCc-EEEEEcccCceeeechh-hhccccccccccCCcceEEecccCccceeeeccceeeEEEe-----------
Confidence            999999999 99999999866544432 36689999999999999999999999999999998744322           


Q ss_pred             CCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecC
Q 014007          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD  401 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  401 (432)
                                               ..+.+|++.+++|-..+++.|+..
T Consensus       229 -------------------------~te~PvN~aaisP~~d~VilgGGq  252 (327)
T KOG0643|consen  229 -------------------------TTERPVNTAAISPLLDHVILGGGQ  252 (327)
T ss_pred             -------------------------eecccccceecccccceEEecCCc
Confidence                                     123479999999987777776654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=7.1e-25  Score=191.46  Aligned_cols=245  Identities=16%  Similarity=0.217  Sum_probs=179.3

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc----eeEEee--cCCceEEEEEecCccEEE-e--
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS--FRSEVRSVKLRRDRIIVV-L--  192 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~----~~~~~~--~~~~v~~~~~~~~~~~~~-~--  192 (432)
                      ..++ +|...|.++++.+.|..|++|+.|     .+|++||+....    ..+.+.  ....|++++|++.|..++ .  
T Consensus       161 i~l~-hgtk~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  161 IQLK-HGTKIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             Eecc-CCceEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence            4555 788899999999999999999999     999999987542    223333  467899999999876555 2  


Q ss_pred             CCeEEEEEcCCCeeeEE------------EeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ceeeee---
Q 014007          193 EQKIFVYNFADLKLLHQ------------IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIM---  255 (432)
Q Consensus       193 d~~i~i~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~---  255 (432)
                      ....+++|-...+....            -++|...+++.+|+|..+..++.|  +.||++++||+...  ....+.   
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~--s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC--SYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe--cCCCcEEEEecCCchhheeEEeecc
Confidence            55788998433222222            235566778899999999888776  58999999999872  223332   


Q ss_pred             --ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc--eEEEEEeCCCcC--ceEEEEECCCCCEEEEEeCCCeEEE
Q 014007          256 --AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRA--EIYSLAFSSNAQWLAVSSDKGTVHV  329 (432)
Q Consensus       256 --~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~--~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i  329 (432)
                        +..-+++.++|+++|+++|+|+.||. |.+|+.....  ....+.. .|..  .|++|.||+||++|++-+.|+++++
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~-AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKD-AHLPGQDITSISFSYDGNYLLSRGFDDTLKV  390 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEeee-ccCCCCceeEEEeccccchhhhccCCCceee
Confidence              23446899999999999999999999 9999975542  2233332 3544  8999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec------CCe
Q 014007          330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM------DGS  403 (432)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~  403 (432)
                      ||++..+....                 ...+ ++.+              -.-+.++|||+.++|++|+.      .|.
T Consensus       391 WDLrq~kkpL~-----------------~~tg-L~t~--------------~~~tdc~FSPd~kli~TGtS~~~~~~~g~  438 (641)
T KOG0772|consen  391 WDLRQFKKPLN-----------------VRTG-LPTP--------------FPGTDCCFSPDDKLILTGTSAPNGMTAGT  438 (641)
T ss_pred             eeccccccchh-----------------hhcC-CCcc--------------CCCCccccCCCceEEEecccccCCCCCce
Confidence            99998763210                 0000 1100              12356899999999999876      466


Q ss_pred             EEEEE
Q 014007          404 FYRCQ  408 (432)
Q Consensus       404 v~iw~  408 (432)
                      +++|+
T Consensus       439 L~f~d  443 (641)
T KOG0772|consen  439 LFFFD  443 (641)
T ss_pred             EEEEe
Confidence            76654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=8.8e-24  Score=196.70  Aligned_cols=276  Identities=14%  Similarity=0.171  Sum_probs=217.9

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      ....|...-+.|+|.|+|.+|.+++.++ |++|+........ ..+. .+...+.+++...+  .|++++.+     ++|
T Consensus         8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~-~~g~~v~~ia~~s~--~f~~~s~~-----~tv   78 (933)
T KOG1274|consen    8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-ETID-ISGELVSSIACYSN--HFLTGSEQ-----NTV   78 (933)
T ss_pred             chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-chhh-ccCceeEEEeeccc--ceEEeecc-----ceE
Confidence            3467999999999999999988887555 9999976553221 2221 25666666665544  78888888     999


Q ss_pred             EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      .+|.+..++.-..+. +.-++.+++++.+|.+++.   |-.|++.+..+......+++|..+|.++.++|.++.+++++ 
T Consensus        79 ~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss-  157 (933)
T KOG1274|consen   79 LRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-  157 (933)
T ss_pred             EEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-
Confidence            999999887765555 7889999999999999984   56899999999999999999999999999999998555443 


Q ss_pred             cCCCCcEEEEEccCCceee-ee-------c-cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007          235 GLQKGQVRVEHYASKRTKF-IM-------A-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~~~~-~~-------~-~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~  305 (432)
                        .||.|++||+..+.+.. +.       . ....+..++|+|+|..|+....|+. |++|+..++.....+....+...
T Consensus       158 --~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~  234 (933)
T KOG1274|consen  158 --CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSK  234 (933)
T ss_pred             --cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccc
Confidence              79999999999855422 11       1 1445778999999888888888999 99999999999999987666667


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI  385 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  385 (432)
                      +..++|+|+|+|||+++.||.|.|||+++.+.                                       ......|.+
T Consensus       235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---------------------------------------~~~~~~Vc~  275 (933)
T KOG1274|consen  235 FSDLQWSPNGKYIAASTLDGQILVWNVDTHER---------------------------------------HEFKRAVCC  275 (933)
T ss_pred             eEEEEEcCCCcEEeeeccCCcEEEEecccchh---------------------------------------ccccceeEE
Confidence            99999999999999999999999999997431                                       111235888


Q ss_pred             EEEccCCCEEEEEecCCeEEEE
Q 014007          386 VAFGHQKNTVVILGMDGSFYRC  407 (432)
Q Consensus       386 ~~~s~~~~~l~~~~~dg~v~iw  407 (432)
                      ++|.|+++.+-.-...|...+|
T Consensus       276 ~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  276 EAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             EecCCCCCeeEEEeeccccccC
Confidence            8999888877666666655543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=3.5e-24  Score=193.42  Aligned_cols=293  Identities=13%  Similarity=0.163  Sum_probs=220.2

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecc----cCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQY  153 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (432)
                      .++.+|.+.|+++.|+|++..|.+++ |+++.+|.-+....+..-...    ++.........|++++..+++.+..   
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~---  337 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT---  337 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc---
Confidence            45679999999999999996555555 888999987655433332222    2445668899999999999999988   


Q ss_pred             CCCeEEEEeCCCC-c--eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC-C---eeeEEEeeccCCcceEEE
Q 014007          154 PLNKVMIWDDHQS-R--CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD-L---KLLHQIETIANPKGLCAV  222 (432)
Q Consensus       154 ~~~~v~iwd~~~~-~--~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~-~---~~~~~~~~~~~~~~~~~~  222 (432)
                        |..++|-.++. .  ....+. |-..|.+++|+|.|.++.+   |.+-|+|-.-. .   ..+..-+.|.....++++
T Consensus       338 --Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~  415 (764)
T KOG1063|consen  338 --GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF  415 (764)
T ss_pred             --CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence              99999983332 1  222233 8899999999999999884   88888886431 1   112222456666777777


Q ss_pred             ecCCCcEEEEeecCCCCcEEEEEccC----------C-------------------------------------------
Q 014007          223 SQGVGSLVLVCPGLQKGQVRVEHYAS----------K-------------------------------------------  249 (432)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~i~d~~~----------~-------------------------------------------  249 (432)
                      -+. +..+ + +|.....+++|+...          +                                           
T Consensus       416 vn~-~~~F-V-SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~  492 (764)
T KOG1063|consen  416 VNE-DLQF-V-SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP  492 (764)
T ss_pred             ccC-Ccee-e-ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence            664 2222 3 344666777776431          0                                           


Q ss_pred             ------------------------ceeeeeccCCceeEEEEcCCCCEEEEEcCCCc----eEEEEECCCCceEEEEEeCC
Q 014007          250 ------------------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGA  301 (432)
Q Consensus       250 ------------------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~----~i~vwd~~~~~~~~~~~~~~  301 (432)
                                              ++..+.+|...|++++.+|+|+++|+++....    .|++|+..+....+.+..  
T Consensus       493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~--  570 (764)
T KOG1063|consen  493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG--  570 (764)
T ss_pred             cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--
Confidence                                    01334578889999999999999999887542    299999999888888885  


Q ss_pred             CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG  381 (432)
Q Consensus       302 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (432)
                      |.-.|+.++|||||++|++.+.|+++.+|........                               ...++..+.|..
T Consensus       571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~-------------------------------e~~fa~~k~HtR  619 (764)
T KOG1063|consen  571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD-------------------------------EFRFACLKAHTR  619 (764)
T ss_pred             cceEEEEEEECCCCcEEEEeecCceEEeeeeecccch-------------------------------hhhhccccccce
Confidence            6689999999999999999999999999999655411                               112556788999


Q ss_pred             CceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      .|+++.|+|++.++++++.|.+|.+|.....
T Consensus       620 IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  620 IIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            9999999999999999999999999998654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.8e-25  Score=197.58  Aligned_cols=229  Identities=16%  Similarity=0.215  Sum_probs=193.2

Q ss_pred             CCeEEEecCCCCCCCCCCeEEEEeCCCCc------eeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCC--ee
Q 014007          139 CNILALVGGGPDPQYPLNKVMIWDDHQSR------CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL--KL  206 (432)
Q Consensus       139 ~~~~~~~s~~~d~~~~~~~v~iwd~~~~~------~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~--~~  206 (432)
                      +++++|.+|++|     |.|++|++....      .+..++ |...|+.+....+++.++   .|-+|++|+...+  -+
T Consensus        35 ~~~ryLfTgGRD-----g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c  109 (735)
T KOG0308|consen   35 PNGRYLFTGGRD-----GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC  109 (735)
T ss_pred             CCCceEEecCCC-----ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh
Confidence            567789999999     999999986542      356677 899999999988886666   3889999998876  57


Q ss_pred             eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-----------eeee-ccCCceeEEEEcCCCCEEE
Q 014007          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----------KFIM-AHDSRIACFALTQDGQLLA  274 (432)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-----------~~~~-~~~~~i~~~~~sp~~~~l~  274 (432)
                      +.++..|.+-|.++++....+ .+++ +|+-|+.|.+||+..+..           ..+. ++...|++++.++.|..++
T Consensus       110 ~stir~H~DYVkcla~~ak~~-~lva-SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv  187 (735)
T KOG0308|consen  110 MSTIRTHKDYVKCLAYIAKNN-ELVA-SGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV  187 (735)
T ss_pred             HhhhhcccchheeeeecccCc-eeEE-ecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence            788889999999998843322 2445 466999999999996421           1223 7888999999999999999


Q ss_pred             EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (432)
Q Consensus       275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (432)
                      +|+..+. |++||.++++.+..+.+  |...|..+..+.||+.+++++.||+|++||+...++                 
T Consensus       188 sGgtek~-lr~wDprt~~kimkLrG--HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-----------------  247 (735)
T KOG0308|consen  188 SGGTEKD-LRLWDPRTCKKIMKLRG--HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC-----------------  247 (735)
T ss_pred             ecCcccc-eEEeccccccceeeeec--cccceEEEEEcCCCCeEeecCCCceEEeeeccccce-----------------
Confidence            9999999 99999999999999995  779999999999999999999999999999988764                 


Q ss_pred             CceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                                        ++++..|...|+++..+|+=..+++|+.||.|+.=++...
T Consensus       248 ------------------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  248 ------------------LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ------------------eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence                              5678899999999999999999999999999998666543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=3.7e-24  Score=190.19  Aligned_cols=295  Identities=16%  Similarity=0.173  Sum_probs=224.4

Q ss_pred             CCcccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE--EEecCCCC--
Q 014007           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPD--  150 (432)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d--  150 (432)
                      ....+..+|.+.|.||...|.|.+|++|+++| |+||.+.++.++....+    ...|.+++|+|...  .|+.+...  
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----cceeEEEEecCCCCceeEEEEecCce
Confidence            34567889999999999999999999999666 99999999999865554    35788888887532  22222111  


Q ss_pred             -------------------------CCCCCCeEEEEeCCCCc-----eeEEeecCCceEEEEEecCccEEEe------CC
Q 014007          151 -------------------------PQYPLNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRRDRIIVVL------EQ  194 (432)
Q Consensus       151 -------------------------~~~~~~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~------d~  194 (432)
                                               ..++++.+..|.-...+     .-..+.|...|..+.|+..|.|+++      ..
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence                                     01234566777643211     1234558999999999999999994      35


Q ss_pred             eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEE
Q 014007          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLL  273 (432)
Q Consensus       195 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l  273 (432)
                      .|.|+++...+...-++-..+.+..+.|+|....+++++    ...|++||+.... ++.+......|..++.+|.|..|
T Consensus       547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl  622 (733)
T KOG0650|consen  547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL  622 (733)
T ss_pred             eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence            799999988766666655667788999999988887664    5899999998744 34556667789999999999999


Q ss_pred             EEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007          274 ATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (432)
Q Consensus       274 ~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (432)
                      +.|+.|+. +..||+.-. +..+++..  |...+++++|++.-.+|++|+.||++.||.-.-..-+...+          
T Consensus       623 i~gs~d~k-~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp----------  689 (733)
T KOG0650|consen  623 ILGSYDKK-MCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP----------  689 (733)
T ss_pred             EEecCCCe-eEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC----------
Confidence            99999999 999999755 45556663  77899999999999999999999999999765443211100          


Q ss_pred             CCCceeEeecccceeecceeeEEEEecCCC----ceEEEEccCCCEEEEEecCCeEEEE
Q 014007          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGS----PYIVAFGHQKNTVVILGMDGSFYRC  407 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~v~iw  407 (432)
                              .++|        +..+++|...    |..+.|+|...+|++++.||+|++|
T Consensus       690 --------liVP--------lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  690 --------LIVP--------LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             --------ceEe--------eeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence                    0111        4456677643    8888999999999999999999998

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=5.5e-24  Score=183.46  Aligned_cols=253  Identities=13%  Similarity=0.107  Sum_probs=191.4

Q ss_pred             CcceeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCce----------eEEee-cCCceEEEEEecC--ccEEE-
Q 014007          127 GGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRC----------IGELS-FRSEVRSVKLRRD--RIIVV-  191 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~----------~~~~~-~~~~v~~~~~~~~--~~~~~-  191 (432)
                      .|...|..+.+.|+.. ++++....     +.|+|||..+..-          -..+. |...-++++|++.  |.++. 
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~-----~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSS-----GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCC-----CCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence            3778888888888654 55556666     8999999764311          11444 7777888999985  44554 


Q ss_pred             -eCCeEEEEEcCCCe-------eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC---CceeeeeccCCc
Q 014007          192 -LEQKIFVYNFADLK-------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSR  260 (432)
Q Consensus       192 -~d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~~  260 (432)
                       .|++|.+||+....       +...+..|...|..++|++-...++..+ | .|+.+.|||+++   +......+|.+.
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv-~-dd~~L~iwD~R~~~~~~~~~~~ah~~~  274 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV-G-DDGKLMIWDTRSNTSKPSHSVKAHSAE  274 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee-c-CCCeEEEEEcCCCCCCCcccccccCCc
Confidence             28899999997532       3456788999999999999988776443 4 899999999995   334557799999


Q ss_pred             eeEEEEcC-CCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCC
Q 014007          261 IACFALTQ-DGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       261 i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      |.|++|+| ++.+||+|+.|++ |++||+|+. +++.++..  |...|.++.|||.. ..||+++.|+++.|||+..-..
T Consensus       275 vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~--H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~  351 (422)
T KOG0264|consen  275 VNCVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEG--HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE  351 (422)
T ss_pred             eeEEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccC--CCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence            99999999 6678899999999 999999985 46677774  77999999999964 5788889999999999986543


Q ss_pred             CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCE-EEEEecCCeEEEEEec
Q 014007          338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT-VVILGMDGSFYRCQFD  410 (432)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~v~iw~~~  410 (432)
                      ....+       .              .......-+..-.+|...|+.+.|+|+..+ |++++.|+.+.||++.
T Consensus       352 eq~~e-------d--------------a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  352 EQSPE-------D--------------AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccChh-------h--------------hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            22100       0              000111124456789999999999997665 6788999999999985

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-22  Score=187.26  Aligned_cols=313  Identities=14%  Similarity=0.172  Sum_probs=217.9

Q ss_pred             CeEEEEEcCCCC--EEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           87 TLLHISFNQDHG--CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        87 ~v~~~~~s~~~~--~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      .|+++ ++|..-  -++.|+..| ++||++.+++.+  .+++ +....|+++.-+|-...++.|..+     |+|.++++
T Consensus       161 ~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v--~~f~-~~~s~IT~ieqsPaLDVVaiG~~~-----G~ViifNl  231 (910)
T KOG1539|consen  161 FITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVV--YTFQ-EFFSRITAIEQSPALDVVAIGLEN-----GTVIIFNL  231 (910)
T ss_pred             ceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEE--EEec-ccccceeEeccCCcceEEEEeccC-----ceEEEEEc
Confidence            37775 467542  366676555 999999999888  5565 677999999999999999999998     99999999


Q ss_pred             CCCceeEEeecC-CceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeecCC
Q 014007          164 HQSRCIGELSFR-SEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQ  237 (432)
Q Consensus       164 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (432)
                      +.++.+.++++. +.|++++|..||..+.+    .|.+.+||++..+.+..++ .|.+.+....+-+...  +++++| .
T Consensus       232 K~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep--Vl~ta~-~  308 (910)
T KOG1539|consen  232 KFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP--VLVTAG-A  308 (910)
T ss_pred             ccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc--eEeecc-C
Confidence            999999999975 99999999999987663    6889999998877665554 4444444444433322  111111 2


Q ss_pred             CCcEEEE-------------------------------------------------------------------------
Q 014007          238 KGQVRVE-------------------------------------------------------------------------  244 (432)
Q Consensus       238 d~~i~i~-------------------------------------------------------------------------  244 (432)
                      |+.+++|                                                                         
T Consensus       309 DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~  388 (910)
T KOG1539|consen  309 DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVF  388 (910)
T ss_pred             CCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccccc
Confidence            3333332                                                                         


Q ss_pred             ---------------------------------------EccCCce-eeeecc------CCceeEEEEcCCCCEEEEEcC
Q 014007          245 ---------------------------------------HYASKRT-KFIMAH------DSRIACFALTQDGQLLATSST  278 (432)
Q Consensus       245 ---------------------------------------d~~~~~~-~~~~~~------~~~i~~~~~sp~~~~l~~~~~  278 (432)
                                                             +++.+.. .....+      ...+++++.++.|++.+.|+.
T Consensus       389 ~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S  468 (910)
T KOG1539|consen  389 STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS  468 (910)
T ss_pred             chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc
Confidence                                                   2111111 001111      246889999999999999999


Q ss_pred             CCceEEEEECCCCceEEEEE-eCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCC-CCCCC-CCCCCC
Q 014007          279 KGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR-STSDP-TLPTSS  355 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~-~~~~~~  355 (432)
                      .|. |.+|++.+|-....|. ...|..+|++++...-++.+++++.+|.+++||..+...+...... +.... ....+.
T Consensus       469 ~G~-Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~  547 (910)
T KOG1539|consen  469 KGT-IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD  547 (910)
T ss_pred             CCe-EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence            999 9999999998888883 2347899999999988999999999999999999987744332210 00000 000000


Q ss_pred             ceeE--ee-ccccee-ecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          356 LSFI--KG-VLPKYF-SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       356 ~~~~--~~-~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      +-.+  .. .+..+. ....-...+.+|.+.|++++|||||++|++++.|++|++||+...
T Consensus       548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence            0000  00 000000 011113457899999999999999999999999999999998653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.4e-24  Score=172.53  Aligned_cols=248  Identities=16%  Similarity=0.182  Sum_probs=192.9

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee-EEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQY  153 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~  153 (432)
                      +.+-..|.+.|..+...--|+.||+++ |+.|+|+.+.+... ....++. +|..++..++|..  -|.+|++++.|   
T Consensus         4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYD---   79 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYD---   79 (299)
T ss_pred             eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecC---
Confidence            456678999999999999999999998 66699999976654 5557776 8999999999865  68999999999   


Q ss_pred             CCCeEEEEeCCCCceeE--Eee-cCCceEEEEEecCc--cEEE---eCCeEEEEEcCCC---eeeEEEeeccCCcceEEE
Q 014007          154 PLNKVMIWDDHQSRCIG--ELS-FRSEVRSVKLRRDR--IIVV---LEQKIFVYNFADL---KLLHQIETIANPKGLCAV  222 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~--~~~-~~~~v~~~~~~~~~--~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~  222 (432)
                        |.|.||.-..++-.+  +.. |...|++++|.|.+  ..|+   +||.|.|.+.+..   ...+....|.-.++.++|
T Consensus        80 --gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   80 --GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             --ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence              999999977774333  333 89999999999964  4444   4999999998764   222334567778889999


Q ss_pred             ecC---CC---------cEEEEeecCCCCcEEEEEccC---CceeeeeccCCceeEEEEcCCC----CEEEEEcCCCceE
Q 014007          223 SQG---VG---------SLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDG----QLLATSSTKGTLV  283 (432)
Q Consensus       223 ~~~---~~---------~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~sp~~----~~l~~~~~dg~~i  283 (432)
                      .|.   |.         -.-+++ |+.|..|+||+.+.   ...+++.+|.+.|+.++|.|.-    .+||+++.||+ |
T Consensus       158 apa~~~g~~~~~~~~~~~krlvS-gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-v  235 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLVS-GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-V  235 (299)
T ss_pred             cCcCCCccccccCcccccceeec-cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-E
Confidence            886   31         012454 55899999999998   4445688999999999999953    57999999999 9


Q ss_pred             EEEECCCC--ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          284 RIFNTLDG--TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       284 ~vwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      .||-.+..  .-..++.. ..+..+..+.||..|..|+.++.|+.|.+|.-..
T Consensus       236 iIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  236 IIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            99976521  11111111 1346799999999999999999999999997654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.8e-23  Score=171.12  Aligned_cols=244  Identities=16%  Similarity=0.158  Sum_probs=190.5

Q ss_pred             cCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCC-CceeEE--eecCCceEEEEEecCccEEEe---CCeEEE
Q 014007          126 RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGE--LSFRSEVRSVKLRRDRIIVVL---EQKIFV  198 (432)
Q Consensus       126 ~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~~~---d~~i~i  198 (432)
                      ......|.+++|+| ...+++.++.|     ++||+|+++. |..+..  ..|.++|.+++|+.||..+++   |+.+++
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD-----~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~   98 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWD-----GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL   98 (347)
T ss_pred             CCcccchheeEeccccCceEEecccC-----CceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence            34678899999999 55667788899     9999999987 444433  238999999999999988873   999999


Q ss_pred             EEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007          199 YNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (432)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (432)
                      ||+.+++ ...+..|..++..+.|-+...+..+++ |+.|.+|+.||.+...........+.++++..  ...+++++..
T Consensus        99 wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~T-GSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata  174 (347)
T KOG0647|consen   99 WDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVT-GSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATA  174 (347)
T ss_pred             EEccCCC-eeeeeecccceeEEEEecCCCcceeEe-cccccceeecccCCCCeeeeeeccceeeehhc--cCceeEEEec
Confidence            9999984 566778999999999998887666664 78999999999998655444455677777765  3446788888


Q ss_pred             CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF  358 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (432)
                      ++. |.+|+++++...........+-.+.+++..+|....|.|+-+|++.|..+..+.+...+                 
T Consensus       175 ~r~-i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF-----------------  236 (347)
T KOG0647|consen  175 ERH-IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF-----------------  236 (347)
T ss_pred             CCc-EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce-----------------
Confidence            888 99999987654332222223456899999899888899999999999999886532211                 


Q ss_pred             EeecccceeecceeeEEEEecCC---------CceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          359 IKGVLPKYFSSEWSVAQFRLVEG---------SPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                                      +++.|..         .|++++|+|.-..|+++|.||++.+||-+..
T Consensus       237 ----------------tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar  283 (347)
T KOG0647|consen  237 ----------------TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR  283 (347)
T ss_pred             ----------------eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence                            2333331         4788999999999999999999999997664

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=2.6e-23  Score=191.54  Aligned_cols=191  Identities=16%  Similarity=0.171  Sum_probs=158.3

Q ss_pred             CceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEE---eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC
Q 014007          176 SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (432)
Q Consensus       176 ~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~  249 (432)
                      ..+++++.++.|.+.+   +.|.|-+|+++.|-....+   ..|..++..+++..-++  .++++ +.+|.+.+||...+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~--~~vsa-~~~Gilkfw~f~~k  525 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR--LLVSA-GADGILKFWDFKKK  525 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc--eEEEc-cCcceEEEEecCCc
Confidence            4577888888888777   3899999999998887777   46788887777766554  34443 48999999999997


Q ss_pred             ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007          250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (432)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  329 (432)
                      .+..-..-...+.++..+.....++.+..|-. |+++|..+.+.++.|.+  |...|++++|||||++|++++.|++|++
T Consensus       526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~-I~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasmD~tIr~  602 (910)
T KOG1539|consen  526 VLKKSLRLGSSITGIVYHRVSDLLAIALDDFS-IRVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASMDSTIRT  602 (910)
T ss_pred             ceeeeeccCCCcceeeeeehhhhhhhhcCcee-EEEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeecCCcEEE
Confidence            76554455678889999998889999999998 99999999999999996  6689999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecC-CeEEEEE
Q 014007          330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD-GSFYRCQ  408 (432)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~v~iw~  408 (432)
                      ||+.++..+.                                    .-.-+.+...+.|||+|.+||++..| .-|++|.
T Consensus       603 wDlpt~~lID------------------------------------~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  603 WDLPTGTLID------------------------------------GLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             EeccCcceee------------------------------------eEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            9999988432                                    11224568899999999999999998 5699996

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=1.8e-24  Score=177.60  Aligned_cols=208  Identities=13%  Similarity=0.212  Sum_probs=175.0

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC------------C------ceeEEee-cCCceEEEEEecCc
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------------S------RCIGELS-FRSEVRSVKLRRDR  187 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~------------~------~~~~~~~-~~~~v~~~~~~~~~  187 (432)
                      .|...+.+.+|+++|.++++|+.|     ..|+|.|++.            +      -.++++- |...|+++.|+|..
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD-----~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSAD-----ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCc-----ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            588999999999999999999999     9999999861            1      1455555 99999999999999


Q ss_pred             cEEEe---CCeEEEEEcCCCee---eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee----eeecc
Q 014007          188 IIVVL---EQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FIMAH  257 (432)
Q Consensus       188 ~~~~~---d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----~~~~~  257 (432)
                      .++++   |++|++||+.....   .+.++ ...++.++.|+|.|+.++++   ..-..+++||+.+-...    .-..|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvg---TdHp~~rlYdv~T~QcfvsanPd~qh  260 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVG---TDHPTLRLYDVNTYQCFVSANPDDQH  260 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEe---cCCCceeEEeccceeEeeecCccccc
Confidence            98885   89999999976432   22222 34678899999999976654   47799999999984432    23579


Q ss_pred             CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      .+.|+++.+++.|++.++++.||. |++||--+++|+.++........|.+..|..+|+|+++.+.|..+++|.+.+++.
T Consensus       261 t~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             ccceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence            999999999999999999999999 9999999999999998764556899999999999999999999999999999998


Q ss_pred             CCCCCCC
Q 014007          338 SARSEPR  344 (432)
Q Consensus       338 ~~~~~~~  344 (432)
                      ++...+.
T Consensus       340 l~~YtGA  346 (430)
T KOG0640|consen  340 LKEYTGA  346 (430)
T ss_pred             EEEEecC
Confidence            7765533

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.4e-22  Score=155.69  Aligned_cols=242  Identities=10%  Similarity=0.122  Sum_probs=191.7

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC------CCCc------eeE---Eee-cCCceEEEEEecCccEEE
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD------HQSR------CIG---ELS-FRSEVRSVKLRRDRIIVV  191 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~------~~~~------~~~---~~~-~~~~v~~~~~~~~~~~~~  191 (432)
                      ....|.+++|+|.+...+.|+..     .+++|.-.      +.+.      +..   .-+ |.+.|+|.+|+|+|.+++
T Consensus        31 dsqairav~fhp~g~lyavgsns-----kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia  105 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNS-----KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA  105 (350)
T ss_pred             chhheeeEEecCCCceEEeccCC-----ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence            67788999999999999988877     77777642      2111      111   112 899999999999999999


Q ss_pred             e---CCeEEEEEcCCCee-----eEEEeeccCCcceEEEecC--CCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCc
Q 014007          192 L---EQKIFVYNFADLKL-----LHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSR  260 (432)
Q Consensus       192 ~---d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~  260 (432)
                      +   |.+|++.-++...+     -.++..|.+.++.++|-.+  ....+++++|..|..|++-|-.. .....+.+|.+-
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh  185 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH  185 (350)
T ss_pred             ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence            5   77898887654322     2356678888888888544  34556777777777787777665 445678899999


Q ss_pred             eeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC-----cCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       261 i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      |.++ ++=+|-.+++|+.|.+ |++||++-..++.++....|     ...|.+++..|.|++|++|-.|....+||++.+
T Consensus       186 ilal-yswn~~m~~sgsqdkt-irfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~  263 (350)
T KOG0641|consen  186 ILAL-YSWNGAMFASGSQDKT-IRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG  263 (350)
T ss_pred             EEEE-EEecCcEEEccCCCce-EEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence            9887 4447889999999999 99999999999988765333     257999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          336 SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +.                                   +..+..|...|.++.|+|...++.+++.|..|++-++.-
T Consensus       264 r~-----------------------------------iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  264 RM-----------------------------------IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             ce-----------------------------------eeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            84                                   335667888899999999999999999999999977643

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=2.4e-23  Score=179.65  Aligned_cols=250  Identities=12%  Similarity=0.145  Sum_probs=200.8

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE----E-------------e--ecCCceEEEEEecCc
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG----E-------------L--SFRSEVRSVKLRRDR  187 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~----~-------------~--~~~~~v~~~~~~~~~  187 (432)
                      .|...+++++.+++..+.++++.+     ++|.-|++.+++...    .             -  .|...+.+++.++|+
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~-----g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKD-----GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             cccCcceEEEeeccccceeecCCC-----cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            689999999999999999999999     999999998876331    1             0  255678999999999


Q ss_pred             cEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeE
Q 014007          188 IIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIAC  263 (432)
Q Consensus       188 ~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~  263 (432)
                      +++++   |..|.||+.++.+.++.+.+|.+.|..++|-.....+|.+   +.|+.|++|+++. ..+.++.+|+..|..
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~---s~Drsvkvw~~~~~s~vetlyGHqd~v~~  291 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSA---SADRSVKVWSIDQLSYVETLYGHQDGVLG  291 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeee---ecCCceEEEehhHhHHHHHHhCCccceee
Confidence            99996   7789999999999999999999999999999888887754   3899999999988 456678999999999


Q ss_pred             EEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCC
Q 014007          264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEP  343 (432)
Q Consensus       264 ~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  343 (432)
                      |....-++.+-+|+.|++ +++|++..-..+ .+.+  +.+.+-+++|-. ...|++|+++|.|.+|++.+.+.+-....
T Consensus       292 IdaL~reR~vtVGgrDrT-~rlwKi~eesql-ifrg--~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~  366 (479)
T KOG0299|consen  292 IDALSRERCVTVGGRDRT-VRLWKIPEESQL-IFRG--GEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL  366 (479)
T ss_pred             echhcccceEEeccccce-eEEEecccccee-eeeC--CCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence            998888888888889999 999999544333 4443  557899999964 46788999999999999998885532210


Q ss_pred             CCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          344 RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                                     ..+..+..       . .-.+...|++++..|..+++|+|+.+|.|++|.+...
T Consensus       367 ---------------AHgv~~~~-------~-~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  367 ---------------AHGVIPEL-------D-PVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ---------------cccccCCc-------c-ccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence                           00111100       0 0011137999999999999999999999999999664

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=4.9e-23  Score=169.23  Aligned_cols=242  Identities=16%  Similarity=0.132  Sum_probs=191.2

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCC
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADL  204 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~  204 (432)
                      .....|.++.|++....|+.++.|     |.+++||+........+.|..++.+.+|.++...+.  .||.|+.+|+.++
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWD-----gslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWD-----GSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEecc-----CcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC
Confidence            467889999999887777777788     999999999998888899999999999999877766  5999999999887


Q ss_pred             eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEE
Q 014007          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~  284 (432)
                      ... .+..|..++.++...+..+.+  + +|+.|+.|++||.+.............|.++..  .|+.|++|+.+.. |.
T Consensus        86 ~~~-~igth~~~i~ci~~~~~~~~v--I-sgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~-v~  158 (323)
T KOG1036|consen   86 NED-QIGTHDEGIRCIEYSYEVGCV--I-SGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRK-VL  158 (323)
T ss_pred             cce-eeccCCCceEEEEeeccCCeE--E-EcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCce-EE
Confidence            654 455788999999999765533  3 467999999999997544444445558888876  5778999999999 99


Q ss_pred             EEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (432)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (432)
                      +||+++............+..+.++++-|++.-+++++-||+|.+=.++.......               .        
T Consensus       159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s---------------k--------  215 (323)
T KOG1036|consen  159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS---------------K--------  215 (323)
T ss_pred             EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh---------------h--------
Confidence            99999887665444333556799999999988899999999998876665532110               0        


Q ss_pred             ceeecceeeEEEEecC---------CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          365 KYFSSEWSVAQFRLVE---------GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       365 ~~~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                              -..++.|.         -+|++++|+|-.+.|++|+.||.|.+|++-.
T Consensus       216 --------kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  216 --------KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             --------ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence                    11233332         1699999999999999999999999998744

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.8e-24  Score=196.19  Aligned_cols=243  Identities=12%  Similarity=0.131  Sum_probs=176.4

Q ss_pred             ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEE-----------eecCCceEEEEEec---Ccc
Q 014007          123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-----------LSFRSEVRSVKLRR---DRI  188 (432)
Q Consensus       123 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~-----------~~~~~~v~~~~~~~---~~~  188 (432)
                      .+...|...|++|.|+++|.+||+|+.|     +.|+||.+...+....           +...+.+..+..++   .+.
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD-----~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~  335 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGED-----GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR  335 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCC-----ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence            3334799999999999999999999999     9999999765322110           00111111111111   111


Q ss_pred             EEEe-----CCeEEEEEcC----CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCC
Q 014007          189 IVVL-----EQKIFVYNFA----DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDS  259 (432)
Q Consensus       189 ~~~~-----d~~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~  259 (432)
                      ....     ... .+.+..    ..+++..+.+|...|-.+.|+.++  ++ .+ .+.|.+|++|++..+.......|..
T Consensus       336 ~s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fL-LS-SSMDKTVRLWh~~~~~CL~~F~Hnd  410 (712)
T KOG0283|consen  336 TSSSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FL-LS-SSMDKTVRLWHPGRKECLKVFSHND  410 (712)
T ss_pred             ccccccccCCcc-ccCCCccccccccchhhhhccchhheecccccCC--ee-Ee-ccccccEEeecCCCcceeeEEecCC
Confidence            1111     111 222211    146788889999998777777764  33 33 4599999999999988777888999


Q ss_pred             ceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          260 RIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       260 ~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      .|+||+|+| |.+|+++|+.|+. ||||++...+.+.....   ..-|++++|+|||++.++|+.+|.+++|++...+..
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~~Vv~W~Dl---~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGK-VRLWSISDKKVVDWNDL---RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             eeEEEEecccCCCcEeecccccc-eEEeecCcCeeEeehhh---hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence            999999999 8899999999999 99999999988877763   378999999999999999999999999999887632


Q ss_pred             CCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE---EecCCCceEEEEcc-CCCEEEEEecCCeEEEEEe
Q 014007          339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF---RLVEGSPYIVAFGH-QKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~  409 (432)
                      ...                              .+..-   +.....|+++.|.| +...|++.+.|..|+||+.
T Consensus       487 ~~~------------------------------~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  487 SDF------------------------------HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             Eee------------------------------eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence            111                              01100   11123799999998 4557888999999999887

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=3.1e-24  Score=179.73  Aligned_cols=244  Identities=14%  Similarity=0.208  Sum_probs=199.5

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .......|.+.|..|++.. +.+|.+|.|++|+.|.++..   ...++.  ....+..+..+.....+++++       .
T Consensus       101 ~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~---p~~til--g~s~~~gIdh~~~~~~FaTcG-------e  167 (433)
T KOG0268|consen  101 CIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP---PLHTIL--GKSVYLGIDHHRKNSVFATCG-------E  167 (433)
T ss_pred             hhheeecccCceeeEEecc-cceEEecCCcceeeeeccCC---cceeee--ccccccccccccccccccccC-------c
Confidence            3466788999999999998 67788888899999998753   224443  667777888888888999998       5


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      .|.|||.....++..+. ....|.++.|+|-...++    +|+.|.+||++++.+++.+.. .-..+.++|+|.+-.  +
T Consensus       168 ~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafn--F  244 (433)
T KOG0268|consen  168 QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFN--F  244 (433)
T ss_pred             eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccc--e
Confidence            69999999999999999 788899999999765444    499999999999998887643 233457899994432  2


Q ss_pred             EeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007          232 VCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~  309 (432)
                      + ++++|..++.||++.  ..+....+|.+.|.+++|+|.|+-+++|+.|.+ |+||..+.+.....+... .-..|.++
T Consensus       245 ~-~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYhtk-RMq~V~~V  321 (433)
T KOG0268|consen  245 V-AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHTK-RMQHVFCV  321 (433)
T ss_pred             e-eccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhHh-hhheeeEE
Confidence            3 356999999999998  567778899999999999999999999999999 999999887665554322 22579999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      .||.|.+|+++|++|+.|++|.....+.+.
T Consensus       322 k~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  322 KYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             EEeccccEEEecCCCcceeeeecchhhhcC
Confidence            999999999999999999999987766443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=4e-25  Score=200.36  Aligned_cols=241  Identities=18%  Similarity=0.243  Sum_probs=204.5

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecC
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD  186 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~  186 (432)
                      +++|+....       .  .|...+.++..-..+..+++|+.|     ..+-+|.+..-..+..+. |..+|.++.|+.+
T Consensus        16 Lr~~~~~~~-------~--~hsaav~~lk~~~s~r~~~~Gg~~-----~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~   81 (825)
T KOG0267|consen   16 LRVWDTREF-------V--AHSAAVGCLKIRKSSRSLVTGGED-----EKVNLWAIGKPNAITSLTGHESPIESLTFDTS   81 (825)
T ss_pred             cccccchhh-------h--hhhhhhceeeeeccceeeccCCCc-----eeeccccccCCchhheeeccCCcceeeecCcc
Confidence            777874321       1  366666666666677899999998     899999988877777777 9999999999999


Q ss_pred             ccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCcee
Q 014007          187 RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIA  262 (432)
Q Consensus       187 ~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~  262 (432)
                      ..+++   .+|+|++||++.++.++++.+|...+..+.|+|-+.+.  + +|+.|..+.+||.+. ++...+.+|...+.
T Consensus        82 E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~--a-~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~  158 (825)
T KOG0267|consen   82 ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFF--A-SGSTDTDLKIWDIRKKGCSHTYKSHTRVVD  158 (825)
T ss_pred             hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEe--c-cccccccceehhhhccCceeeecCCcceeE
Confidence            88887   38999999999999999999999999999999998744  3 578999999999994 88888899999999


Q ss_pred             EEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCC
Q 014007          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (432)
Q Consensus       263 ~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  342 (432)
                      ++.|+|+|++++.+++|.. ++|||+..|+.+.+|..  |++.+..+.|+|..-++++|+.|+++++||+++.+.+.   
T Consensus       159 ~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~---  232 (825)
T KOG0267|consen  159 VLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS---  232 (825)
T ss_pred             EEeecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEee---
Confidence            9999999999999999999 99999999999999995  67899999999999999999999999999999866321   


Q ss_pred             CCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCe
Q 014007          343 PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS  403 (432)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  403 (432)
                                                      ..+.....|.+++|+|++..+++|..+..
T Consensus       233 --------------------------------s~~~~~~~v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  233 --------------------------------SGKPETDGVRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             --------------------------------ccCCccCCceeeeecCCceeeecCchhhh
Confidence                                            11122346889999999999998887643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.2e-22  Score=163.07  Aligned_cols=270  Identities=16%  Similarity=0.213  Sum_probs=196.4

Q ss_pred             cccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEee-cCCceEEEEEecC--ccEEEe---C
Q 014007          124 FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEVRSVKLRRD--RIIVVL---E  193 (432)
Q Consensus       124 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~--~~~~~~---d  193 (432)
                      +..+|..-|.++.|+.-|..+++++.|     ++|+|||..+.    .+....+ |.+.|..+.|.+-  |+.+++   |
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsD-----q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D   82 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSD-----QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD   82 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCC-----CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence            334688889999999999999999999     99999997544    3444555 9999999999763  777773   9


Q ss_pred             CeEEEEEcCC---------CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ce------eee---
Q 014007          194 QKIFVYNFAD---------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RT------KFI---  254 (432)
Q Consensus       194 ~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~------~~~---  254 (432)
                      +++.||.-..         .....++......+..+.|.|..-.+.+++++ .||.++||+.... .+      ..+   
T Consensus        83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~-aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~  161 (361)
T KOG2445|consen   83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS-ADGILRIYEAPDPMNLSQWTLQHEIQNV  161 (361)
T ss_pred             CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec-cCcEEEEEecCCccccccchhhhhhhhc
Confidence            9999997421         12345566667789999999999888888755 8999999987651 11      111   


Q ss_pred             ----eccCCceeEEEEcCC---CCEEEEEcCC-----CceEEEEECCCC--c--eEEEEEeCCCcCceEEEEECCC----
Q 014007          255 ----MAHDSRIACFALTQD---GQLLATSSTK-----GTLVRIFNTLDG--T--LLQEVRRGADRAEIYSLAFSSN----  314 (432)
Q Consensus       255 ----~~~~~~i~~~~~sp~---~~~l~~~~~d-----g~~i~vwd~~~~--~--~~~~~~~~~~~~~i~~~~~s~~----  314 (432)
                          ..+..+..|+.|+|.   ..+||.|+.+     +. ++||....+  +  .+.++.  .|..+|++++|.|+    
T Consensus       162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr~  238 (361)
T KOG2445|consen  162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELP--DHTDPIRDISWAPNIGRS  238 (361)
T ss_pred             cCCcccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcC--CCCCcceeeeeccccCCc
Confidence                146677889999983   4678888876     35 788876543  2  333444  47799999999996    


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCE
Q 014007          315 AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT  394 (432)
Q Consensus       315 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  394 (432)
                      -.+||+++.|| |+||.++.....-..+..     ..+.        .+.++  ....+..+..|++.|+.++|+-.|..
T Consensus       239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~-----~~~~--------~~~~l--~v~~vs~~~~H~~~VWrv~wNmtGti  302 (361)
T KOG2445|consen  239 YHLLAVATKDG-VRIFKVKVARSAIEEEEV-----LAPD--------LMTDL--PVEKVSELDDHNGEVWRVRWNMTGTI  302 (361)
T ss_pred             eeeEEEeecCc-EEEEEEeeccchhhhhcc-----cCCC--------Ccccc--ceEEeeeccCCCCceEEEEEeeeeeE
Confidence            34799999999 999999864421100000     0000        00000  11225568889999999999999999


Q ss_pred             EEEEecCCeEEEEEecCCCCCcce
Q 014007          395 VVILGMDGSFYRCQFDPVNGGEMT  418 (432)
Q Consensus       395 l~~~~~dg~v~iw~~~~~~~~~~~  418 (432)
                      |++.|.||.|++|..+.....+|.
T Consensus       303 LsStGdDG~VRLWkany~n~~kC~  326 (361)
T KOG2445|consen  303 LSSTGDDGCVRLWKANYNNLWKCT  326 (361)
T ss_pred             EeecCCCceeeehhhhhhhhheee
Confidence            999999999999998776554443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-22  Score=188.41  Aligned_cols=243  Identities=17%  Similarity=0.191  Sum_probs=195.2

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC-ceeEEee-cCCceEEEEEecCccEEEe-CCeEEEEEcCC
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCIGELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFAD  203 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~-d~~i~i~d~~~  203 (432)
                      .|..+.+.++|.+++.++++++.|     |.|++|+.... +.-..+. +...|.+++......+..+ +++|.+|.+..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsd-----g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSD-----GDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCC-----CceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence            488889999999999999999999     99999997665 3333444 7777888777555222223 89999999988


Q ss_pred             CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCce
Q 014007          204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTL  282 (432)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~  282 (432)
                      ++.-..+.-..-+++.++++.+|+.++   +|+.|-.|++.+... .....+.+|.++|.++.|+|++++||+.+.||. 
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g~~ia---agsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~-  161 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSGKMIA---AGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK-  161 (933)
T ss_pred             CCccceeeeeeccceEEEEecCCcEEE---eecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce-
Confidence            766555555566888999999998554   355899999999877 567788999999999999999999999999999 


Q ss_pred             EEEEECCCCceEEEEEeCC------CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007          283 VRIFNTLDGTLLQEVRRGA------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL  356 (432)
Q Consensus       283 i~vwd~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (432)
                      |++||+.++.+..++.+-.      ....+..++|+|+|..|+..+.|+.|++|+..+.......               
T Consensus       162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L---------------  226 (933)
T KOG1274|consen  162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL---------------  226 (933)
T ss_pred             EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee---------------
Confidence            9999999998877765421      1245788999999888888889999999999988743211               


Q ss_pred             eeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                        ..+.+...+..+.|+|+|++||+++.||.|.||+++.
T Consensus       227 ------------------r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  227 ------------------RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ------------------cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence                              1223344589999999999999999999999999973

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=3.8e-21  Score=172.68  Aligned_cols=235  Identities=15%  Similarity=0.173  Sum_probs=172.7

Q ss_pred             CeEEEEEcCCCCEE-EEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEeC
Q 014007           87 TLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        87 ~v~~~~~s~~~~~l-~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd~  163 (432)
                      .+.+++|+|+|+.+ +++. ++.|++||..+++..  ..+.  ....+..+.+++++..+ +++..+     +.|++||+
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~--~~~~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~  102 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLP--SGPDPELFALHPNGKILYIANEDD-----NLVTVIDI  102 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--Eecc--CCCCccEEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence            46789999999976 4555 455999999877654  3343  12234567888887655 455556     89999999


Q ss_pred             CCCceeEEeecCCceEEEEEecCccEEEe---C-CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007          164 HQSRCIGELSFRSEVRSVKLRRDRIIVVL---E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (432)
Q Consensus       164 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (432)
                      .+++.+..+.+...+.+++|+|++.+++.   + ..+.+||..+++....+.. ......++|++++..+++.  +..++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~~~  179 (300)
T TIGR03866       103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVS--SEIGG  179 (300)
T ss_pred             CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEE--cCCCC
Confidence            99888887776666789999999988873   2 3577889988877665533 2344678999998866543  34689


Q ss_pred             cEEEEEccCCce-eeeeccC-----C--ceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007          240 QVRVEHYASKRT-KFIMAHD-----S--RIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (432)
Q Consensus       240 ~i~i~d~~~~~~-~~~~~~~-----~--~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~  310 (432)
                      .|.+||+.+... ..+..+.     .  ....++|+|++++++++ +.++. |.+||+++++.+..+.   +...+.+++
T Consensus       180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~---~~~~~~~~~  255 (300)
T TIGR03866       180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLL---VGQRVWQLA  255 (300)
T ss_pred             EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEE---eCCCcceEE
Confidence            999999988543 3332211     1  23568899999986554 45667 9999999998877665   235789999


Q ss_pred             ECCCCCEEEEE-eCCCeEEEEEecCCCC
Q 014007          311 FSSNAQWLAVS-SDKGTVHVFNLKVNSG  337 (432)
Q Consensus       311 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~  337 (432)
                      |+|+|++|+++ +.+|.|++||+++++.
T Consensus       256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       256 FTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            99999999886 4689999999999873

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=1.5e-23  Score=182.63  Aligned_cols=235  Identities=10%  Similarity=0.207  Sum_probs=204.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      ..+.|.++.+.|||+.|++|+... +.|||+..........+. .....+.+++.++|...++++..|     |.|.|||
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDakvcFsccsd-----GnI~vwD  537 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSD-----GNIAVWD  537 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccC-----CcEEEEE
Confidence            456789999999999999998654 999999876666555554 344567788899999998888888     9999999


Q ss_pred             CCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC
Q 014007          163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (432)
Q Consensus       163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (432)
                      +.+...++.|+ |...+.||.+++||..+.+   |++|+.||+++++.++... ....|..+..+|.++.+++   |..+
T Consensus       538 Lhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlav---GMen  613 (705)
T KOG0639|consen  538 LHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAV---GMEN  613 (705)
T ss_pred             cccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceee---eccc
Confidence            99999999999 9999999999999999884   8899999999988776653 4566778889999997765   4478


Q ss_pred             CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE
Q 014007          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (432)
Q Consensus       239 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  318 (432)
                      +.+.|..........+..|++-|.++.|.+.|+++++.+.|+- +..|.+.-|..+...+   ....|.++..|.|.++|
T Consensus       614 s~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyI  689 (705)
T KOG0639|consen  614 SNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYI  689 (705)
T ss_pred             CcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeecc---ccCcceeeeeccCceEE
Confidence            9999988888888888899999999999999999999999999 9999998888887776   55899999999999999


Q ss_pred             EEEeCCCeEEEEEe
Q 014007          319 AVSSDKGTVHVFNL  332 (432)
Q Consensus       319 ~~~~~dg~i~iwd~  332 (432)
                      ++|+.|....||.+
T Consensus       690 VTGSGdkkATVYeV  703 (705)
T KOG0639|consen  690 VTGSGDKKATVYEV  703 (705)
T ss_pred             EecCCCcceEEEEE
Confidence            99999998888876

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=1.6e-20  Score=164.10  Aligned_cols=304  Identities=16%  Similarity=0.205  Sum_probs=212.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      ..-|.|++|.++|..+..-+++.|.||+..+.+..  +... .|...|.+++...+|..+. |+.|     ..|..||-.
T Consensus       246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~--k~~~-aH~ggv~~L~~lr~GtllS-GgKD-----Rki~~Wd~~  316 (626)
T KOG2106|consen  246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRIS--KQVH-AHDGGVFSLCMLRDGTLLS-GGKD-----RKIILWDDN  316 (626)
T ss_pred             ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEE--eEee-ecCCceEEEEEecCccEee-cCcc-----ceEEecccc
Confidence            36799999999998654444555999997655443  3333 6999999999999998887 8888     999999821


Q ss_pred             CCcee------------------------------------------EEeecCCceEEEEEecCccEEEe---CCeEEEE
Q 014007          165 QSRCI------------------------------------------GELSFRSEVRSVKLRRDRIIVVL---EQKIFVY  199 (432)
Q Consensus       165 ~~~~~------------------------------------------~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~  199 (432)
                       -+.+                                          ..+.|....+.++.+|+...+++   |+.+++|
T Consensus       317 -y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW  395 (626)
T KOG2106|consen  317 -YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLW  395 (626)
T ss_pred             -ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEc
Confidence             1111                                          01125566778888887666663   8999999


Q ss_pred             EcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007          200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (432)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (432)
                      +  ..++..+.. ...+..+..|+|.| .+++   |...|...+.|..+..+..+.....++++++|+|+|.+||.|+.|
T Consensus       396 ~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~---Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d  468 (626)
T KOG2106|consen  396 N--DHKLEWTKI-IEDPAECADFHPSG-VVAV---GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD  468 (626)
T ss_pred             c--CCceeEEEE-ecCceeEeeccCcc-eEEE---eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCC
Confidence            9  445544443 35677789999998 4433   457899999999997776666668999999999999999999999


Q ss_pred             CceEEEEECCCCc-eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC---------
Q 014007          280 GTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP---------  349 (432)
Q Consensus       280 g~~i~vwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------  349 (432)
                      +. |+||-+.... ........ +..+|+.+.||+|+++|.+-+-|-.|..|....-+.... -....+..         
T Consensus       469 ~~-iyiy~Vs~~g~~y~r~~k~-~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts-~kDvkW~t~~c~lGF~v  545 (626)
T KOG2106|consen  469 NH-IYIYRVSANGRKYSRVGKC-SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS-VKDVKWATYTCTLGFEV  545 (626)
T ss_pred             Ce-EEEEEECCCCcEEEEeeee-cCceeEEeeecCCCceEEeccCceEEEEEccccCcccce-ecceeeeeeEEEEEEEE
Confidence            99 9999887544 44344332 448999999999999999999999999994433322221 10000000         


Q ss_pred             --------------------CCCCCCceeEee-cccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          350 --------------------TLPTSSLSFIKG-VLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       350 --------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                                          ...+.....++. ..|. ....-.+..+.+|.+.|.+++|.-+...|++.+.|.+|..|+
T Consensus       546 ~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc-~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~  624 (626)
T KOG2106|consen  546 FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPC-SSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR  624 (626)
T ss_pred             ecccCCchHHHhhhhhhhhhhhccccCceEEEEcccc-CCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence                                000000000000 0000 000112446778999999999999888888888999999998


Q ss_pred             e
Q 014007          409 F  409 (432)
Q Consensus       409 ~  409 (432)
                      +
T Consensus       625 l  625 (626)
T KOG2106|consen  625 L  625 (626)
T ss_pred             e
Confidence            6

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.7e-21  Score=174.62  Aligned_cols=282  Identities=13%  Similarity=0.195  Sum_probs=218.4

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      ...--+..|.+++|+.+.+.||++-.+ .|.||++... ......+.++....|-+++|.+.+.++.++. +     |.|
T Consensus        20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~-s-----g~i   92 (691)
T KOG2048|consen   20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAEGGRLFSSGL-S-----GSI   92 (691)
T ss_pred             EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEccCCeEEeecC-C-----ceE
Confidence            344457899999999999999999844 4999998753 3334566666788999999996666655554 4     999


Q ss_pred             EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEE--EeeccCCcceEEEecCCCcEEEE
Q 014007          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQ--IETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      .-||+.+++.+..+. ..+.|++++.+|.+..++.   ||.++.++...++....  +.-....+-++.|++++..++  
T Consensus        93 ~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~--  170 (691)
T KOG2048|consen   93 TEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA--  170 (691)
T ss_pred             EEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE--
Confidence            999999999999998 8899999999998877773   78788888777665443  233345677778888776543  


Q ss_pred             eecCCCCcEEEEEccCCceee-----eec----cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc
Q 014007          233 CPGLQKGQVRVEHYASKRTKF-----IMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~~~-----~~~----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~  303 (432)
                       +|+.||.|++||...+....     +..    ...-|.++.|-.++ .|++|...|+ |.+||...+.+++.+..  |.
T Consensus       171 -~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~  245 (691)
T KOG2048|consen  171 -GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HD  245 (691)
T ss_pred             -ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hh
Confidence             46799999999998854322     111    23347788887666 6899999999 99999999999998885  66


Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee-eEEEEecCCC
Q 014007          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS-VAQFRLVEGS  382 (432)
Q Consensus       304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  382 (432)
                      +.|.+++..+++.++.+++.|+.|.-|...+.+.                                +|. ......|...
T Consensus       246 adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~--------------------------------~wv~~~~r~~h~hd  293 (691)
T KOG2048|consen  246 ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS--------------------------------EWVINSRRDLHAHD  293 (691)
T ss_pred             cceeEEEEcCCCCeEEEccCCCceEEEEecCCcc--------------------------------ceeeeccccCCccc
Confidence            8999999999999999999999999998887752                                121 1234456677


Q ss_pred             ceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          383 PYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       383 v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      |.+++..++  .|++|+.|+.+.+-..
T Consensus       294 vrs~av~~~--~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  294 VRSMAVIEN--ALISGGRDFTLAICSS  318 (691)
T ss_pred             ceeeeeecc--eEEecceeeEEEEccc
Confidence            888888776  8889999999887544

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.7e-22  Score=166.56  Aligned_cols=255  Identities=15%  Similarity=0.232  Sum_probs=202.9

Q ss_pred             EEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCc
Q 014007          109 RIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDR  187 (432)
Q Consensus       109 ~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  187 (432)
                      ..|...+....+.+.+. +|...|+.++.......+.+++.|     .+-+||.+++|.|+..+. |.+.|++++|++.+
T Consensus       129 ssFk~~t~~~~lvre~~-GHkDGiW~Vaa~~tqpi~gtASAD-----hTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~  202 (481)
T KOG0300|consen  129 SSFKDGTVKFRLVRELE-GHKDGIWHVAADSTQPICGTASAD-----HTARIWSLESGACLATYTGHTGSVNSIKFHNSG  202 (481)
T ss_pred             eeecCCceeEeehhhhc-ccccceeeehhhcCCcceeecccc-----cceeEEeeccccceeeecccccceeeEEecccc
Confidence            34443333334445665 899999999988877889999999     999999999999999999 99999999999999


Q ss_pred             cEEEe---CCeEEEEE------cCC----------------------------------CeeeEEEeeccCCcceEEEec
Q 014007          188 IIVVL---EQKIFVYN------FAD----------------------------------LKLLHQIETIANPKGLCAVSQ  224 (432)
Q Consensus       188 ~~~~~---d~~i~i~d------~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~  224 (432)
                      .+++.   |++-+||.      +..                                  ..++..+.+|...+.++.|-.
T Consensus       203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~  282 (481)
T KOG0300|consen  203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA  282 (481)
T ss_pred             ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence            98884   78888986      111                                  013445666777777777777


Q ss_pred             CCCcEEEEeecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCC
Q 014007          225 GVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGAD  302 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~  302 (432)
                      .|+.++.   ++.|.+..+||+.++.+ ..+.+|....+.++-+|..+++++++.|.+ .++||++.. ..+..|.+  |
T Consensus       283 gg~Q~vT---aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT-FRLWDFReaI~sV~VFQG--H  356 (481)
T KOG0300|consen  283 GGQQMVT---ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT-FRLWDFREAIQSVAVFQG--H  356 (481)
T ss_pred             Ccceeee---eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce-eEeccchhhcceeeeecc--c
Confidence            7776653   34899999999999654 567899999999999999999999999999 999999854 44566775  6


Q ss_pred             cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCC
Q 014007          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS  382 (432)
Q Consensus       303 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (432)
                      ...|+++.|.-+. .+++|++|.+|+|||+++.+..                                  +++++. +..
T Consensus       357 tdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp----------------------------------lATIRt-dS~  400 (481)
T KOG0300|consen  357 TDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP----------------------------------LATIRT-DSP  400 (481)
T ss_pred             ccceeEEEEecCC-ceeecCCCceEEEeeeccccCc----------------------------------ceeeec-CCc
Confidence            7899999998765 5779999999999999998732                                  334443 346


Q ss_pred             ceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          383 PYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       383 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      ++.++.+..+..|+.--.+..|++|+++-
T Consensus       401 ~NRvavs~g~~iIAiPhDNRqvRlfDlnG  429 (481)
T KOG0300|consen  401 ANRVAVSKGHPIIAIPHDNRQVRLFDLNG  429 (481)
T ss_pred             cceeEeecCCceEEeccCCceEEEEecCC
Confidence            88899988888888888888999999854

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=2e-22  Score=182.71  Aligned_cols=290  Identities=12%  Similarity=0.146  Sum_probs=215.1

Q ss_pred             EEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEE--eecccCcceeEEEEeeeC-----------CeEEEecCCCCCCCC
Q 014007           89 LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRC-----------NILALVGGGPDPQYP  154 (432)
Q Consensus        89 ~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-----------~~~~~~s~~~d~~~~  154 (432)
                      -++.|++....|.+-. |+.++|||+..-...-.  .-+  -|...|+++.--|           -...+++++.|    
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD----  401 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSD----  401 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCccceeEecCC----
Confidence            3568999888887776 66699999965443311  223  3788888776443           12357888888    


Q ss_pred             CCeEEEEeCCCCc---eeE-----------------------------------EeecCCceEEEEEecCccEEEe---C
Q 014007          155 LNKVMIWDDHQSR---CIG-----------------------------------ELSFRSEVRSVKLRRDRIIVVL---E  193 (432)
Q Consensus       155 ~~~v~iwd~~~~~---~~~-----------------------------------~~~~~~~v~~~~~~~~~~~~~~---d  193 (432)
                       ++|++||+..+.   ..+                                   .+.....+.+++++|+|+++++   .
T Consensus       402 -~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~  480 (1080)
T KOG1408|consen  402 -GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG  480 (1080)
T ss_pred             -CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence             999999987521   100                                   0112335899999999999996   5


Q ss_pred             CeEEEEEcCCCeeeEEEeeccCCcceEEEecCC-CcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCC
Q 014007          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDG  270 (432)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~  270 (432)
                      |++++|++...+....++.|...|.++.++.-. ..-+++ +++.|..|.|||+..  ..+.++.+|...|+++.|.-+|
T Consensus       481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA-SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g  559 (1080)
T KOG1408|consen  481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA-SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG  559 (1080)
T ss_pred             CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh-hccCCceEEEEecccccchhhhhcccccceeEEEEeecC
Confidence            799999999988888899999999999887543 223445 466999999999976  5667889999999999998877


Q ss_pred             --CEEEEEcCCCceEEEEECCC-CceEEEEEeCC---CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCC
Q 014007          271 --QLLATSSTKGTLVRIFNTLD-GTLLQEVRRGA---DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (432)
Q Consensus       271 --~~l~~~~~dg~~i~vwd~~~-~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  344 (432)
                        ..+++++.|.. |. |+... ..-...+..+.   ....++.|+..|..+++++++.|..|+|||+.++++.+.+   
T Consensus       560 ln~~MiscGADks-im-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F---  634 (1080)
T KOG1408|consen  560 LNRKMISCGADKS-IM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF---  634 (1080)
T ss_pred             CceEEEeccCchh-hh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee---
Confidence              77899999987 54 44332 11122233221   2357999999999999999999999999999999865432   


Q ss_pred             CCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007          345 STSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY  422 (432)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~  422 (432)
                                                   ..-+.|+|..-.+...|.|.+|++.+.|.++.++++-  .|+.+.++..
T Consensus       635 -----------------------------Kgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~--sgEcvA~m~G  681 (1080)
T KOG1408|consen  635 -----------------------------KGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV--SGECVAQMTG  681 (1080)
T ss_pred             -----------------------------cccccCCCceEEEEECCCccEEEEeecCCceEEEEec--cchhhhhhcC
Confidence                                         2234577788889999999999999999999998874  4454444443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=9.6e-22  Score=162.59  Aligned_cols=274  Identities=12%  Similarity=0.120  Sum_probs=197.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe------------eEEEeecccCcceeEEEEeee-------CCeEE
Q 014007           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR------------EIFRRDFERGGGIGVVEMLFR-------CNILA  143 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~------------~~~~~~~~~~~~~~v~~~~~~-------~~~~~  143 (432)
                      ...-...+.|+|||..|.+-+ |+++++|++....            ......+  .....|...+|-       |+..+
T Consensus        48 p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~--~eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   48 PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY--QEGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe--ccCCEEEEEEeeeccccCCCccce
Confidence            444566789999999877766 7789999984211            1111112  134556666663       56778


Q ss_pred             EecCCCCCCCCCCeEEEEeCCCCceeEEee---cCC---ceEEEEEecCccEEEe--CCeEEEEEc-CCCeeeEEE----
Q 014007          144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRS---EVRSVKLRRDRIIVVL--EQKIFVYNF-ADLKLLHQI----  210 (432)
Q Consensus       144 ~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~---~~~---~v~~~~~~~~~~~~~~--d~~i~i~d~-~~~~~~~~~----  210 (432)
                      +++.+.+     .-|++||.-+|+....+.   |..   ...+++|+|||..++.  ...|++||+ +.|+.....    
T Consensus       126 ~a~ssr~-----~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  126 FAVSSRD-----QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             eeecccc-----CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhh
Confidence            8888888     999999999999887776   433   3568999999998884  789999998 445422111    


Q ss_pred             ---eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEE
Q 014007          211 ---ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (432)
Q Consensus       211 ---~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vw  286 (432)
                         .+..+-+.+++|+|.....+ ++ |+....+-||.-.. +.+..+.+|.+.|+.+.|.++|+.|++|+.....|-.|
T Consensus       201 ~~k~gq~giisc~a~sP~~~~~~-a~-gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDSKTL-AV-GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW  278 (406)
T ss_pred             cccccccceeeeeeccCCCCcce-ee-ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence               12345567889999876543 43 55778888887766 56677889999999999999999999998744339999


Q ss_pred             ECCCC-ceEEEEEeCCCcCceEE--EEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007          287 NTLDG-TLLQEVRRGADRAEIYS--LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (432)
Q Consensus       287 d~~~~-~~~~~~~~~~~~~~i~~--~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                      |++.. ..+..+.++.. ..-..  ....|++++|++|+.||.|++||+++.-..                         
T Consensus       279 DiR~~~~pv~~L~rhv~-~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~-------------------------  332 (406)
T KOG2919|consen  279 DIRYSRDPVYALERHVG-DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE-------------------------  332 (406)
T ss_pred             eehhccchhhhhhhhcc-CccceEEEecCCCCceeeccCCCccEEEEecCCCCCc-------------------------
Confidence            99864 55666665422 12333  445689999999999999999999984321                         


Q ss_pred             cceeecceeeEEEEecCCCceEEEEccCCCEEEEEecC
Q 014007          364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD  401 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  401 (432)
                               ...+..+...|+.++++|--.++|+++..
T Consensus       333 ---------~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  333 ---------VSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ---------ccccccccccccceecCcccceeeeccCc
Confidence                     12344567789999999997888877765

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=4e-22  Score=173.63  Aligned_cols=258  Identities=16%  Similarity=0.177  Sum_probs=200.7

Q ss_pred             CCeEEEEEcCCCCEEEEEc---CCcEEEEEcCCCe--eEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           86 PTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~---~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      ..+.++.|+.... |++++   |..|++|.-+...  ........ +.  ...+++......++++|+..     +.|+|
T Consensus        35 pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~-gd--~~~Cv~~~s~S~y~~sgG~~-----~~Vki  105 (673)
T KOG4378|consen   35 PGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLT-GD--NAFCVACASQSLYEISGGQS-----GCVKI  105 (673)
T ss_pred             Ccceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccc-cc--hHHHHhhhhcceeeeccCcC-----ceeee
Confidence            3599999998765 55544   4448899754321  11112222 22  33344444455899999998     99999


Q ss_pred             EeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeec-cCCcceEEEecCCCcEEEEeec
Q 014007          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      ||++...+.+.++ |...|+++.++....++++   .|.|.|..+.++..-..+... ...++.+.+++..+.++..+  
T Consensus       106 wdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~a--  183 (673)
T KOG4378|consen  106 WDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIA--  183 (673)
T ss_pred             hhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEee--
Confidence            9999766777777 9999999999999999884   789999999998877777655 34456889999887765443  


Q ss_pred             CCCCcEEEEEccCCce--eeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007          236 LQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (432)
Q Consensus       236 ~~d~~i~i~d~~~~~~--~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s  312 (432)
                      +.+|.|.+||+.+...  .....|..+...|+|+| +..+|++.+.|.. |.+||.+..+....+.   ...+...++|+
T Consensus       184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~---y~~Plstvaf~  259 (673)
T KOG4378|consen  184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLT---YSHPLSTVAFS  259 (673)
T ss_pred             ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceee---ecCCcceeeec
Confidence            4899999999988433  34568999999999999 5567889999999 9999999888877777   45789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  392 (432)
                      ++|.+|+.|...|.|..||++..+..                                  ++.+..|...|++++|-+..
T Consensus       260 ~~G~~L~aG~s~G~~i~YD~R~~k~P----------------------------------v~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  260 ECGTYLCAGNSKGELIAYDMRSTKAP----------------------------------VAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CCceEEEeecCCceEEEEecccCCCC----------------------------------ceEeeecccceeEEEeeecc
Confidence            99999999999999999999987632                                  56778899899999997764

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3e-21  Score=174.35  Aligned_cols=242  Identities=14%  Similarity=0.220  Sum_probs=200.0

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE-Eee--cCCceEEEEEecCccEEEe--CCeEEEEEcC
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG-ELS--FRSEVRSVKLRRDRIIVVL--EQKIFVYNFA  202 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~-~~~--~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~  202 (432)
                      ....|++++|+.+...+|.+-.+     |.|.+|++..+-... .+.  ....|.+++|.+.++++.+  +|.|.-||+.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~-----g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTD-----GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             eccceEEEEEeccCCceeeeccC-----CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecc
Confidence            56789999999999999999988     999999998864333 333  5678999999988888774  8999999999


Q ss_pred             CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee---eeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQDGQLLATSSTK  279 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (432)
                      +++++..++...+.+..++.+|.+..+.+.|   +||.+..++...+.+.   .+....+.|.+++|+|++..|++|+.|
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc---ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D  175 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPENTILAIGC---DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID  175 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCccceEEeec---CCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence            9999999999999999999999998776544   8997777777666553   234556899999999999999999999


Q ss_pred             CceEEEEECCCCceEEEEEeC-----C-CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007          280 GTLVRIFNTLDGTLLQEVRRG-----A-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT  353 (432)
Q Consensus       280 g~~i~vwd~~~~~~~~~~~~~-----~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (432)
                      |. |++||...+..++.....     . .+.-|+++.|-.++ .|++|...|+|.+||...+..++              
T Consensus       176 g~-Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiq--------------  239 (691)
T KOG2048|consen  176 GV-IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQ--------------  239 (691)
T ss_pred             ce-EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhh--------------
Confidence            99 999999999887733321     1 22458888887665 68899999999999999988533              


Q ss_pred             CCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCC
Q 014007          354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG  414 (432)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~  414 (432)
                                           .++.|+..|.+++.++++++|+++|.|+.|..|.......
T Consensus       240 ---------------------S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  240 ---------------------SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             ---------------------hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence                                 4567888899999999999999999999999998866533

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2e-22  Score=174.27  Aligned_cols=234  Identities=12%  Similarity=0.134  Sum_probs=190.8

Q ss_pred             CEEEEEc-CC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-c
Q 014007           98 GCFAAGT-DH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F  174 (432)
Q Consensus        98 ~~l~~~~-~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~  174 (432)
                      .+++++. .+ .+.+|.+....... ..+  --...+.++.-++.|.+++.|...     |.+++|.+.+|..+..+. |
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~-q~~--v~Pg~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~~aH  122 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVV-QYI--VLPGPVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVLSAH  122 (476)
T ss_pred             hheeeecccCccccccccCchhhhh-hhc--ccccceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHHHhh
Confidence            4666666 33 39999986544432 112  255678899999999999999777     999999999999998888 9


Q ss_pred             CCceEEEEEecCccEEEe---CCeEEEEEcCC---------CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007          175 RSEVRSVKLRRDRIIVVL---EQKIFVYNFAD---------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (432)
Q Consensus       175 ~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (432)
                      -..|+++.|+.|+.++++   ||.|.+|.+.+         -++++.+..|.-+|+.+...+.|..-.+.++ +.|.+++
T Consensus       123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k  201 (476)
T KOG0646|consen  123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIK  201 (476)
T ss_pred             ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe-cCCceEE
Confidence            999999999999999995   89999998743         3567788888889998888887655555543 4999999


Q ss_pred             EEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC----------------ceEEEEEeCCCcCce
Q 014007          243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----------------TLLQEVRRGADRAEI  306 (432)
Q Consensus       243 i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~----------------~~~~~~~~~~~~~~i  306 (432)
                      +||+..+.+.........+.+++.+|-++.+++|+.+|. |.+.++...                ..+..+.+|.....|
T Consensus       202 ~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I  280 (476)
T KOG0646|consen  202 LWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI  280 (476)
T ss_pred             EEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence            999999887776677889999999999999999999999 988876532                334555654433599


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCC
Q 014007          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS  341 (432)
Q Consensus       307 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  341 (432)
                      ++++.+-||.+|++|+.||.|.|||+.+.++++..
T Consensus       281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             eEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence            99999999999999999999999999998876654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=8.2e-22  Score=178.30  Aligned_cols=234  Identities=17%  Similarity=0.258  Sum_probs=195.4

Q ss_pred             ccCCCCCCCeEE-EEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           79 STSSSPPPTLLH-ISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        79 ~~~~~~~~~v~~-~~~s~-~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ....+|.+-|.+ ++|-+ ++-.|++|+ |..|.+|........  ..+. +|...|.++....++. +++|+.|     
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~--~~Lk-gH~snVC~ls~~~~~~-~iSgSWD-----  121 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL--YTLK-GHKSNVCSLSIGEDGT-LISGSWD-----  121 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch--hhhh-ccccceeeeecCCcCc-eEecccc-----
Confidence            345567777776 78875 444566666 666999998877666  5676 8999999999877777 9999999     


Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      .++++|-.  +++...+. |...|++++.-|++.++.  +|.+|++|.  .++.++++.+|.+.|+.+++-+++.  ++.
T Consensus       122 ~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~--flS  195 (745)
T KOG0301|consen  122 STAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH--FLS  195 (745)
T ss_pred             cceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC--eEe
Confidence            99999964  56666677 999999999999998877  499999998  4788999999999999999999864  343


Q ss_pred             eecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-CceEEEEE
Q 014007          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLAF  311 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~~~~  311 (432)
                      |  +.||.|++|++....+....+|...|+++...+++..++++++|++ ++||+..  ++.+.+.   ++ ..|+++.+
T Consensus       196 c--sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~---lPttsiWsa~~  267 (745)
T KOG0301|consen  196 C--SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVIT---LPTTSIWSAKV  267 (745)
T ss_pred             e--cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEe---cCccceEEEEE
Confidence            3  4899999999999999999999999999998888889999999999 9999854  8888888   44 47999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          312 SSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       312 s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      -++|. |++|+.||.||||.....+
T Consensus       268 L~NgD-Ivvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  268 LLNGD-IVVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             eeCCC-EEEeccCceEEEEEecccc
Confidence            88887 5688889999999988655

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=8.7e-22  Score=176.50  Aligned_cols=280  Identities=13%  Similarity=0.109  Sum_probs=197.8

Q ss_pred             EEEEEcCC---CCEEEEEcCCc-EEEEEcCCCeeE-EE---eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           89 LHISFNQD---HGCFAAGTDHG-FRIYNCDPFREI-FR---RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        89 ~~~~~s~~---~~~l~~~~~~~-i~iw~~~~~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      .+..|++-   ..+|+.+.+.| |.++|....... ..   +.. ..|...|.++.|.+....|++...|     .++++
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGD-----sT~r~  126 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGD-----STIRP  126 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCC-----ceeee
Confidence            34566542   34788888555 999997543222 00   122 2699999999999988899999988     99999


Q ss_pred             EeCCCCceeEE--ee-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCee---------------------------
Q 014007          161 WDDHQSRCIGE--LS-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKL---------------------------  206 (432)
Q Consensus       161 wd~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~---------------------------  206 (432)
                      ||+++.+++..  +. |.+.|.+++|.+....++ +   ||.|.|||++....                           
T Consensus       127 Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr  206 (720)
T KOG0321|consen  127 WDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR  206 (720)
T ss_pred             eeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence            99999988766  44 999999999999766555 3   89999999875320                           


Q ss_pred             eEEEeeccCCcce---EEEecCCCcEEEEeecCCCCcEEEEEccCCce---------eeeecc---CCceeEEEEcCCCC
Q 014007          207 LHQIETIANPKGL---CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---------KFIMAH---DSRIACFALTQDGQ  271 (432)
Q Consensus       207 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---------~~~~~~---~~~i~~~~~sp~~~  271 (432)
                      +.....+.+.+..   +.+..|..  .|+++|..|+.|+|||++....         ..+.-|   .-.+.++.....|.
T Consensus       207 ~~k~kA~s~ti~ssvTvv~fkDe~--tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt  284 (720)
T KOG0321|consen  207 IRKWKAASNTIFSSVTVVLFKDES--TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT  284 (720)
T ss_pred             ccccccccCceeeeeEEEEEeccc--eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence            0011112222222   34445544  3455666799999999987321         112223   33577888888889


Q ss_pred             EEEEEcCCCceEEEEECCCCc--eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 014007          272 LLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP  349 (432)
Q Consensus       272 ~l~~~~~dg~~i~vwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  349 (432)
                      +|++.+.|+. |++||+.+..  .+..+.+......-..-..+||+.+|++|+.|...++|.+.+.+..           
T Consensus       285 ~L~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~-----------  352 (720)
T KOG0321|consen  285 YLFASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP-----------  352 (720)
T ss_pred             eEEEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC-----------
Confidence            9988888999 9999998643  3444443322222334456899999999999999999999987632           


Q ss_pred             CCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccC-CCEEEEEecCCeEEEEEecC
Q 014007          350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ-KNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~  411 (432)
                                             ...+.+|.-.|++++|.|. -.-+++++.|-.++||++..
T Consensus       353 -----------------------~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  353 -----------------------PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             -----------------------hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence                                   2246678888999999983 34577789999999999944

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=5.4e-22  Score=167.20  Aligned_cols=206  Identities=14%  Similarity=0.204  Sum_probs=158.9

Q ss_pred             cCCceEEEEEecCc--cEEEe---CCeEEEEEcCC----------------CeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          174 FRSEVRSVKLRRDR--IIVVL---EQKIFVYNFAD----------------LKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       174 ~~~~v~~~~~~~~~--~~~~~---d~~i~i~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      |.+.++.+...+-+  .+.++   .|.|+||++..                .+++.++.+|...-..++|+|-.... ++
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~-Ll  228 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR-LL  228 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc-cc
Confidence            56666666655543  23332   67889998753                24567777888777889999954443 23


Q ss_pred             eecCCCCcEEEEEccCCce----eeeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          233 CPGLQKGQVRVEHYASKRT----KFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~----~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                       +|..-+.|++|...++.-    ..+.+|...|..++|||. ...|++|+.||+ |+|||++.+.....+....|.+.|+
T Consensus       229 -sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  229 -SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             -cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCcee
Confidence             355678899999887442    335679999999999994 468899999999 9999999984333332245788999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  387 (432)
                      -|.|+.+-.+||+|++||+++|||++..+.-                                ..+++++.|..+|+++.
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~--------------------------------~pVA~fk~Hk~pItsie  354 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSG--------------------------------QPVATFKYHKAPITSIE  354 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCC--------------------------------CcceeEEeccCCeeEEE
Confidence            9999998889999999999999999987621                                12778999999999999


Q ss_pred             Ecc-CCCEEEEEecCCeEEEEEecCCCC
Q 014007          388 FGH-QKNTVVILGMDGSFYRCQFDPVNG  414 (432)
Q Consensus       388 ~s~-~~~~l~~~~~dg~v~iw~~~~~~~  414 (432)
                      |+| +...|++++.|..|.||++..+..
T Consensus       355 W~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  355 WHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             eccccCceEEeccCCCcEEEEEeeccCC
Confidence            999 566788999999999999977543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=2.9e-21  Score=160.05  Aligned_cols=286  Identities=15%  Similarity=0.219  Sum_probs=208.0

Q ss_pred             cccCCCCCCCeEEEEEcC-----CCCEEEEEcCCcEEEEEcCCCe--eEEEeecccCcceeEEEEeeeCC----eEEEec
Q 014007           78 ESTSSSPPPTLLHISFNQ-----DHGCFAAGTDHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCN----ILALVG  146 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~----~~~~~s  146 (432)
                      ..+...|..+|..++|++     +-..+|+.+.+.+.||......  ..+.......+......++|.-+    ..+++.
T Consensus        31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             eehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            367788999999999985     2236777777779999886443  22222222235566666666432    456777


Q ss_pred             CCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEE---eeccCCcc
Q 014007          147 GGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQI---ETIANPKG  218 (432)
Q Consensus       147 ~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~---~~~~~~~~  218 (432)
                      ++.-     |.|+|.|+.++++...+. |...|+.+.+.|+.. ++++   |..|++|++++..++..+   .+|.+.|-
T Consensus       111 ~G~~-----GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL  185 (385)
T KOG1034|consen  111 GGYL-----GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL  185 (385)
T ss_pred             ecce-----eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence            7776     999999999999999998 999999999999863 3332   889999999999998877   56888899


Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccCCce-----------------------------eeeeccCCceeEEEEcCC
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----------------------------KFIMAHDSRIACFALTQD  269 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-----------------------------~~~~~~~~~i~~~~~sp~  269 (432)
                      ++.|+.+++  .++++| .|..+++|++..+..                             .+..-|...|.|+.|-  
T Consensus       186 SvD~~~~gd--~i~ScG-mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--  260 (385)
T KOG1034|consen  186 SVDFSLDGD--RIASCG-MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--  260 (385)
T ss_pred             EEEEcCCCC--eeeccC-CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--
Confidence            999999998  445444 999999999984211                             0112466677777773  


Q ss_pred             CCEEEEEcCCCceEEEEECC-CC-------------ceEEEEEeCCCcCceEEEE--ECCCCCEEEEEeCCCeEEEEEec
Q 014007          270 GQLLATSSTKGTLVRIFNTL-DG-------------TLLQEVRRGADRAEIYSLA--FSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       270 ~~~l~~~~~dg~~i~vwd~~-~~-------------~~~~~~~~~~~~~~i~~~~--~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      |+++++=+-++. |..|... -.             ..+.++.-  ....|+-+.  |.|-+++||.|...|.|++||++
T Consensus       261 gd~ilSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~  337 (385)
T KOG1034|consen  261 GDFILSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLD  337 (385)
T ss_pred             hhheeecccCce-EEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcEEEEECC
Confidence            678888888888 9999761 11             12233332  123455554  55668899999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe--cCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          334 VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL--VEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      ..+....                                 .++.-  ....|...+||.||..|+..+.||.|.-|+.
T Consensus       338 ~~ep~~~---------------------------------ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  338 NNEPPKC---------------------------------TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CCCCccC---------------------------------ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            8774311                                 11111  2246889999999999999999999988875

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4.9e-21  Score=157.38  Aligned_cols=246  Identities=17%  Similarity=0.260  Sum_probs=177.1

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee--EEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQY  153 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~  153 (432)
                      .+..+|.+-|+++.|.+.|+.+|+++ |..|+|||.+....  ......+ .|...|+.+.|.+  =|..+++++.|   
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~D---   82 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYD---   82 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecC---
Confidence            45678999999999999999999998 55699999643332  3333444 6889999998854  37899999999   


Q ss_pred             CCCeEEEEeCCCC---------ceeEEee-cCCceEEEEEecC--ccEEE---eCCeEEEEEcCCC------eeeEEEe-
Q 014007          154 PLNKVMIWDDHQS---------RCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL------KLLHQIE-  211 (432)
Q Consensus       154 ~~~~v~iwd~~~~---------~~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~------~~~~~~~-  211 (432)
                        +++.||.-...         ....++. ..+.|+++.|.|.  |..++   .||.++||+..+-      .+.++++ 
T Consensus        83 --rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen   83 --RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN  160 (361)
T ss_pred             --CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence              99999974211         1233344 6789999999985  55565   3999999987652      2223333 


Q ss_pred             ------eccCCcceEEEecCCCc-EEEEeecCCC-----CcEEEEEccCC-----ceeeeeccCCceeEEEEcCC----C
Q 014007          212 ------TIANPKGLCAVSQGVGS-LVLVCPGLQK-----GQVRVEHYASK-----RTKFIMAHDSRIACFALTQD----G  270 (432)
Q Consensus       212 ------~~~~~~~~~~~~~~~~~-~~~~~~g~~d-----~~i~i~d~~~~-----~~~~~~~~~~~i~~~~~sp~----~  270 (432)
                            .+..+..++.|++..-. .+++. |+.+     +.+.||.....     .+..+.+|..+|+.++|.|+    -
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence                  12334456666654321 13333 3222     48889987662     34456799999999999995    4


Q ss_pred             CEEEEEcCCCceEEEEECCCC--------------------ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007          271 QLLATSSTKGTLVRIFNTLDG--------------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (432)
Q Consensus       271 ~~l~~~~~dg~~i~vwd~~~~--------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  330 (432)
                      ..||+++.||  |+||.++..                    +.+..+.  .|.+.|+.+.|+-.|..|++.+.||.|++|
T Consensus       240 ~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~--~H~~~VWrv~wNmtGtiLsStGdDG~VRLW  315 (361)
T KOG2445|consen  240 HLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD--DHNGEVWRVRWNMTGTILSSTGDDGCVRLW  315 (361)
T ss_pred             eeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeecc--CCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence            6899999999  899998731                    1222333  477899999999999999999999999999


Q ss_pred             EecCC
Q 014007          331 NLKVN  335 (432)
Q Consensus       331 d~~~~  335 (432)
                      ...-.
T Consensus       316 kany~  320 (361)
T KOG2445|consen  316 KANYN  320 (361)
T ss_pred             hhhhh
Confidence            87543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=3.6e-21  Score=166.18  Aligned_cols=287  Identities=11%  Similarity=0.090  Sum_probs=206.8

Q ss_pred             cccCCCCCCCeEEEEEcCCCC--EEEEEcCCc-EEEEEcCCCeeE--EEeecccCcceeEEEEeeeCCe-EEEecCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHG--CFAAGTDHG-FRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCNI-LALVGGGPDP  151 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~-i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~  151 (432)
                      ..+..-+...|++++|+|...  ++|+|+..| |-+||+.+.+..  ....+. .|...|.++.|+|.. ..+++.+.| 
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyD-  256 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYD-  256 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccC-
Confidence            356667889999999999654  677777555 999999532221  112232 688999999999854 567778888 


Q ss_pred             CCCCCeEEEEeCCCCceeEEee---cCCceEEEEEecCccEEE-eC--CeEEEEEcCCCee-eEEEeeccCCcceEEEec
Q 014007          152 QYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV-LE--QKIFVYNFADLKL-LHQIETIANPKGLCAVSQ  224 (432)
Q Consensus       152 ~~~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~-~d--~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~  224 (432)
                          |+|++-|++.+.....+.   ....+.++.|+.+...++ .+  |...+||++++.. ...+..|...|..++++|
T Consensus       257 ----GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP  332 (498)
T KOG4328|consen  257 ----GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP  332 (498)
T ss_pred             ----ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence                999999998774433333   344566777877655444 32  4789999998654 666777888999999999


Q ss_pred             CCCcEEEEeecCCCCcEEEEEccC---Cc--eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC----CCceEE
Q 014007          225 GVGSLVLVCPGLQKGQVRVEHYAS---KR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL----DGTLLQ  295 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i~d~~~---~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~----~~~~~~  295 (432)
                      ...+++ ++ ++.|++++|||++.   +.  ......|...|.+..|||.+-.|++.+.|.. |+|||..    .-..+.
T Consensus       333 ~~p~~l-aT-~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~  409 (498)
T KOG4328|consen  333 VCPWFL-AT-ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLG  409 (498)
T ss_pred             CCchhe-ee-cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccc
Confidence            988764 44 35899999999987   22  2345689999999999998878999999999 9999973    334444


Q ss_pred             EEEeCCCc----CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007          296 EVRRGADR----AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW  371 (432)
Q Consensus       296 ~~~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (432)
                      ++. |.+.    -......|.|+..++++|..-..|-|||-..++.+.                                
T Consensus       410 ~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~--------------------------------  456 (498)
T KOG4328|consen  410 TIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVC--------------------------------  456 (498)
T ss_pred             eee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEee--------------------------------
Confidence            454 1111    135567899999999999998899999998877321                                


Q ss_pred             eeEEEEecCC-Cc-eEEEEccCCC-EEEEEecCCeEEEEEe
Q 014007          372 SVAQFRLVEG-SP-YIVAFGHQKN-TVVILGMDGSFYRCQF  409 (432)
Q Consensus       372 ~~~~~~~~~~-~v-~~~~~s~~~~-~l~~~~~dg~v~iw~~  409 (432)
                         .+..+.. .| ....|+|-+. +++-++..|.|+||.-
T Consensus       457 ---el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  457 ---ELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             ---eccCccccccccceeecccccceeccCCccceEEEEec
Confidence               1112221 23 3458999877 5555566899999863

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.9e-21  Score=168.08  Aligned_cols=244  Identities=16%  Similarity=0.212  Sum_probs=195.0

Q ss_pred             CCCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           81 SSSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~-~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      ......+|.+.+|.|+|. .+++++... ++.||+.+.+........+.....+..+..++++.+++..+..     |.|
T Consensus       253 ~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I  327 (514)
T KOG2055|consen  253 IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHI  327 (514)
T ss_pred             eeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----ceE
Confidence            344467899999999999 677777555 9999998877665555543334456677788999999999988     999


Q ss_pred             EEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccC-CcceEEEecCCCcEEEEee
Q 014007          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN-PKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  234 (432)
                      .+....+++.+..++..+.|..++|+.+++.+..   +|.|++||++...+++.+..... .-+.++.++++.  ++|+ 
T Consensus       328 ~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~--ylA~-  404 (514)
T KOG2055|consen  328 HLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS--YLAT-  404 (514)
T ss_pred             EeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc--eEEe-
Confidence            9999999999999999999999999999987773   88999999999999888864332 223567778877  5564 


Q ss_pred             cCCCCcEEEEEccC-------CceeeeeccCCceeEEEEcCCCCEEEEEcC--CCceEEEEECCCCceEEEEEeCC-CcC
Q 014007          235 GLQKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEVRRGA-DRA  304 (432)
Q Consensus       235 g~~d~~i~i~d~~~-------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--dg~~i~vwd~~~~~~~~~~~~~~-~~~  304 (432)
                      |+..|.|.|||.++       +++..+..-...|++++|++++++||.++.  +.. +|+-.+.+......+.... .-+
T Consensus       405 GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg  483 (514)
T KOG2055|consen  405 GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVG  483 (514)
T ss_pred             ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCccc
Confidence            77999999999765       345556667788999999999999998875  456 8998888777666655421 125


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      .|+||+|||.|.+||.|..+|.+.+|.+.
T Consensus       484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  484 HVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ceEEEEecCCCceEEeecCCCceeeEeec
Confidence            69999999999999999999999999875

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.88  E-value=1e-21  Score=175.99  Aligned_cols=112  Identities=17%  Similarity=0.204  Sum_probs=94.7

Q ss_pred             ceeEEEEcC-CCCEEEEEcCCCceEEEEECCCC-------ceEEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEE
Q 014007          260 RIACFALTQ-DGQLLATSSTKGTLVRIFNTLDG-------TLLQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVF  330 (432)
Q Consensus       260 ~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~-------~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw  330 (432)
                      .|+.+.|.| |...||+++.||. |++|.+..+       +....+..  |...|+++.|+|- ...|++++.|-+|++|
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~-i~lWr~~a~gl~e~~~tPe~~lt~--h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQ-INLWRLTANGLPENEMTPEKILTI--HGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             eeeecccCCCChHHeeecccCce-EEEEEeccCCCCcccCCcceeeec--ccceEEEEEecchhhhHhhhhhccceeeee
Confidence            467778888 7788999999999 999998754       33445554  5588999999994 5688999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          331 NLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       331 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      |+.+.+.                                   ...+.+|.+.|..++|||||+.+|+.|.||+|++|+-
T Consensus       706 Dl~~~~~-----------------------------------~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  706 DLANAKL-----------------------------------YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             ehhhhhh-----------------------------------hheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence            9999873                                   3357899999999999999999999999999999764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=6e-21  Score=172.71  Aligned_cols=302  Identities=14%  Similarity=0.131  Sum_probs=219.0

Q ss_pred             CCcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeec--ccCcceeEEEEeeeCCeEEEecCCCCCC
Q 014007           76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDF--ERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (432)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (432)
                      .+.....+|.+.|..++|+|.|.+|.+.+ |.+-|||-.-..+... ..+  +.-|+....++++-+....+++|.+.  
T Consensus       352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~w-HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE--  428 (764)
T KOG1063|consen  352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEW-HEIARPQIHGYDLTCLSFVNEDLQFVSGADE--  428 (764)
T ss_pred             eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccce-eeecccccccccceeeehccCCceeeecccc--
Confidence            44567899999999999999999887776 7778888643222111 111  12478888899988866667777766  


Q ss_pred             CCCCeEEEEeCC-------------------------------------------CCce---------------------
Q 014007          153 YPLNKVMIWDDH-------------------------------------------QSRC---------------------  168 (432)
Q Consensus       153 ~~~~~v~iwd~~-------------------------------------------~~~~---------------------  168 (432)
                         ..+|+|+..                                           +|..                     
T Consensus       429 ---KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~  505 (764)
T KOG1063|consen  429 ---KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT  505 (764)
T ss_pred             ---eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence               777888531                                           0100                     


Q ss_pred             ------------e-EEeecCCceEEEEEecCccEEEe--------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007          169 ------------I-GELSFRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       169 ------------~-~~~~~~~~v~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                                  + +.+.|...|++++.+|+++++++        ...|++|+..+....+.+..|.-.|+.++|+||++
T Consensus       506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~  585 (764)
T KOG1063|consen  506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR  585 (764)
T ss_pred             HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCc
Confidence                        0 01226667999999999999995        34699999988888888999999999999999999


Q ss_pred             cEEEEeecCCCCcEEEEEccCCc-----eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC--ceEEEEEeC
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRG  300 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~--~~~~~~~~~  300 (432)
                      +++-++   .|.++.+|......     ....+.|..-|.+..|+|++++++|++.|.+ |++|.....  +.+..+...
T Consensus       586 ~LLsvs---RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~-VkVW~~~~~~d~~i~~~a~~  661 (764)
T KOG1063|consen  586 YLLSVS---RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK-VKVWEEPDLRDKYISRFACL  661 (764)
T ss_pred             EEEEee---cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce-EEEEeccCchhhhhhhhchh
Confidence            765443   89999999876522     2336789999999999999999999999999 999998877  554443333


Q ss_pred             CCcCceEEEEECCC-----CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEE
Q 014007          301 ADRAEIYSLAFSSN-----AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ  375 (432)
Q Consensus       301 ~~~~~i~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (432)
                      .+...|+.++|.|-     +..++.|-+.|.|.+|............              .+         .-...+..
T Consensus       662 ~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~--------------~~---------~~~~~l~~  718 (764)
T KOG1063|consen  662 KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVG--------------TF---------NLDTRLCA  718 (764)
T ss_pred             ccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccce--------------ee---------eecccccc
Confidence            36688999999872     3367888899999999976332211110              00         00000222


Q ss_pred             EEecCCCceEEEEccC--------C--CEEEEEecCCeEEEEEec
Q 014007          376 FRLVEGSPYIVAFGHQ--------K--NTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       376 ~~~~~~~v~~~~~s~~--------~--~~l~~~~~dg~v~iw~~~  410 (432)
                      ...|.+.|+.++|+|.        .  ..|++|+.|..++|++++
T Consensus       719 ~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  719 TIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             ccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            3456778999999974        2  246999999999999874

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=8.2e-23  Score=185.52  Aligned_cols=233  Identities=12%  Similarity=0.211  Sum_probs=201.9

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      +-...|...|.|+..-..++.+++|++.. +-+|.+......  ..+. +|...|-++.|+.....++.|..+     |+
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i--~S~~-~hespIeSl~f~~~E~Llaagsas-----gt   93 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI--TSLT-GHESPIESLTFDTSERLLAAGSAS-----GT   93 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh--heee-ccCCcceeeecCcchhhhcccccC-----Cc
Confidence            34566889999999977888999998554 789998655444  3455 799999999999999999999999     99


Q ss_pred             EEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      |++||++.++.++++. |...+..+.|+|-+.+.+   .|..+++||++...+.+.+..|...+.++.|+|+|+..  +.
T Consensus        94 iK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v--~~  171 (825)
T KOG0267|consen   94 IKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWV--AS  171 (825)
T ss_pred             eeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCcee--ec
Confidence            9999999999999998 999999999999999997   48999999999888999999999999999999999844  43


Q ss_pred             ecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007          234 PGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s  312 (432)
                       |++|..++|||+..+.+ ..|..|++.+.++.|+|..-++++|+.|++ |++||+++.+.+.....  ....|.+.+|+
T Consensus       172 -g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~fn  247 (825)
T KOG0267|consen  172 -GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAFN  247 (825)
T ss_pred             -cCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeeec
Confidence             55799999999988655 567889999999999999999999999999 99999998888776664  35789999999


Q ss_pred             CCCCEEEEEeCCC
Q 014007          313 SNAQWLAVSSDKG  325 (432)
Q Consensus       313 ~~~~~l~~~~~dg  325 (432)
                      |++..+++|....
T Consensus       248 ~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  248 PDGKIVLSGEQIS  260 (825)
T ss_pred             CCceeeecCchhh
Confidence            9999998886543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.88  E-value=3.6e-21  Score=154.88  Aligned_cols=283  Identities=12%  Similarity=0.143  Sum_probs=194.5

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .-++..|...|+++.|-.+++ |..|...| |.+|.+.+........+  .+...|..+..-++ ..+.+-++|     .
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqgRd-----~   77 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQGRD-----P   77 (323)
T ss_pred             eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcCCC-----c
Confidence            345668999999999998877 66777666 99999988776643333  47778888887777 667788888     9


Q ss_pred             eEEEEeCCCCceeEEeecCCceEEEEE-----ecCcc----EEEeC----CeEEEEEcCCCeeeEEEee----ccCCcce
Q 014007          157 KVMIWDDHQSRCIGELSFRSEVRSVKL-----RRDRI----IVVLE----QKIFVYNFADLKLLHQIET----IANPKGL  219 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~-----~~~~~----~~~~d----~~i~i~d~~~~~~~~~~~~----~~~~~~~  219 (432)
                      .+.+|++.-+..+..-.  -.++++.|     .++++    .+..+    ..+++-|......+.....    ..+.+.+
T Consensus        78 ~L~lw~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc  155 (323)
T KOG0322|consen   78 LLILWTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC  155 (323)
T ss_pred             eEEEEEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence            99999988755433222  22233322     22221    22221    1133333322222221111    1223344


Q ss_pred             EEEecCCCcEEEEeecCCCCcEEEEEccCC-----------ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-----------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~  288 (432)
                      ..+.......+++.+|.++|.+.+||+.++           .......|..+|.++.|.+.-..=++|+.+.. +..|++
T Consensus       156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl  234 (323)
T KOG0322|consen  156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSL  234 (323)
T ss_pred             eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeee
Confidence            443333333344446889999999999884           22334578999999999875555567777777 888887


Q ss_pred             CC--Cce--EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007          289 LD--GTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (432)
Q Consensus       289 ~~--~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (432)
                      ..  +.+  ..++..  ..-.|..+..-||++.+|+++.|++|+||..++...                           
T Consensus       235 ~~s~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p---------------------------  285 (323)
T KOG0322|consen  235 NHSTGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP---------------------------  285 (323)
T ss_pred             ccccCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCc---------------------------
Confidence            53  222  122221  225688999999999999999999999999999874                           


Q ss_pred             ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                              ++.++.|.+.|++++|+||.+.+|.++.|++|-+|++
T Consensus       286 --------LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  286 --------LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             --------hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                    5568889999999999999999999999999999986

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=6.5e-21  Score=157.42  Aligned_cols=221  Identities=17%  Similarity=0.268  Sum_probs=167.8

Q ss_pred             eEEEEeCCCCcee-----EEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCee-----eEEEeeccCCcceEEE
Q 014007          157 KVMIWDDHQSRCI-----GELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKL-----LHQIETIANPKGLCAV  222 (432)
Q Consensus       157 ~v~iwd~~~~~~~-----~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~  222 (432)
                      ...-|+.+..+..     ..++ |...|++++|+.||+.+++   |+.|++|++++...     ++. ....+.-+.+.|
T Consensus        62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~F  140 (420)
T KOG2096|consen   62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVF  140 (420)
T ss_pred             chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEE
Confidence            3555655444332     2445 8999999999999999994   99999999987422     111 112234467999


Q ss_pred             ecCCCcEEEEeecCCCCcEEEEEccCCce-------------eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRT-------------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (432)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-------------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~  289 (432)
                      +||.+.+++.+.  ....+++|.+..+.-             ..-..|.-.+..+-...++.+|++++.|.. |.+|+++
T Consensus       141 apDc~s~vv~~~--~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~-i~lw~lk  217 (420)
T KOG2096|consen  141 APDCKSVVVSVK--RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK-ICLWDLK  217 (420)
T ss_pred             CCCcceEEEEEc--cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc-EEEEecC
Confidence            999998877763  467899997754211             112346677888888889999999999999 9999998


Q ss_pred             CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeec
Q 014007          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSS  369 (432)
Q Consensus       290 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (432)
                       |+.+..+..  ....-+..+.||+|++|++++..-.|++|.+--++.-                           .+.+
T Consensus       218 -Gq~L~~idt--nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG---------------------------~fqe  267 (420)
T KOG2096|consen  218 -GQLLQSIDT--NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG---------------------------TFQE  267 (420)
T ss_pred             -Cceeeeecc--ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc---------------------------chhh
Confidence             999998875  3356678899999999999998888999998544310                           0112


Q ss_pred             ceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          370 EWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .....++++|...|..++|+++...+++.+.||+.+||+.|.
T Consensus       268 v~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  268 VKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             hhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            222557999999999999999999999999999999999877

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.9e-20  Score=157.72  Aligned_cols=308  Identities=14%  Similarity=0.136  Sum_probs=219.0

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCC------eeEEEeecccCcceeEEEEeeeCCeEEEecCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  150 (432)
                      +.-+.+|.+-|+++.|+.++++|++|+|+. +++|+++..      +.+  ......|...|.+++|......+.+|+.+
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI--~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI--GVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc--eeccCccccceEEEEEccCCeeEecCCCc
Confidence            455678999999999999999999999766 999998521      222  22223566899999999999999999999


Q ss_pred             CCCCCCeEEEEeCCCCceeEEeecC---CceEEEEEecCccEEEe---CCeEEEEEcCCCe-eeE--EEeeccCCcceEE
Q 014007          151 PQYPLNKVMIWDDHQSRCIGELSFR---SEVRSVKLRRDRIIVVL---EQKIFVYNFADLK-LLH--QIETIANPKGLCA  221 (432)
Q Consensus       151 ~~~~~~~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~-~~~--~~~~~~~~~~~~~  221 (432)
                           ++|.+.|+++.+.+..+.|.   +.|+.+..+|....+++   ++.|.+||.+... .+.  .+.........+.
T Consensus       127 -----~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~  201 (609)
T KOG4227|consen  127 -----GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE  201 (609)
T ss_pred             -----ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence                 99999999999999988854   48999999996665552   8899999998754 222  2223345566788


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccCCceee--------eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF--------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--------~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~  293 (432)
                      |+|....++++.  +..+-+-+||.+......        +......-.++.|+|+|..|++--.... -.+||+.+.++
T Consensus       202 F~P~~P~Li~~~--~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~-P~~~D~~S~R~  278 (609)
T KOG4227|consen  202 FHPETPALILVN--SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC-PLYFDFISQRC  278 (609)
T ss_pred             ecCCCceeEEec--cccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC-CEEeeeecccc
Confidence            999887766543  467889999998733211        1111222357789999998887766655 67889877655


Q ss_pred             EE-EEEeCC-----CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccccee
Q 014007          294 LQ-EVRRGA-----DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF  367 (432)
Q Consensus       294 ~~-~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (432)
                      .. .+. +.     ....+.+++|-.|. -+++|+.+-.|++|.+........+..            +..-.-.+|.-.
T Consensus       279 ~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~------------IG~~~~~~~~~~  344 (609)
T KOG4227|consen  279 FVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQ------------IGHDEEEMPSEI  344 (609)
T ss_pred             eeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccc------------cCcchhhCchhh
Confidence            32 222 11     12367788887654 489999999999999876442211100            000000111111


Q ss_pred             ecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      --...+..+++|...++.|.|+|...+|++.+-...++||.-
T Consensus       345 ~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  345 FIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             eecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            112237789999999999999999999999999999999964

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=9.7e-21  Score=170.76  Aligned_cols=271  Identities=12%  Similarity=0.153  Sum_probs=209.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~  166 (432)
                      .|+.++|-|||..|+.+.++.+.|||.+.+...  .+++ +|...|.+++|+.+|..+++|+.|     ..|.+|+- .-
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLK-gHKDtVycVAys~dGkrFASG~aD-----K~VI~W~~-kl   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLK-GHKDTVYCVAYAKDGKRFASGSAD-----KSVIIWTS-KL   84 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccc--cccc-cccceEEEEEEccCCceeccCCCc-----eeEEEecc-cc
Confidence            899999999999999999999999999887766  7787 899999999999999999999999     99999983 33


Q ss_pred             ceeEEeecCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEE
Q 014007          167 RCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (432)
Q Consensus       167 ~~~~~~~~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~  244 (432)
                      +-+..+.|...|.|+.|+|-...+++  =...-+|........ ..+ ....+.+++|..||..+++.   -.+|+|.+-
T Consensus        85 EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG---~~nGTIsiR  159 (1081)
T KOG1538|consen   85 EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALG---MFNGTISIR  159 (1081)
T ss_pred             cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEe---ccCceEEee
Confidence            44455669999999999998887774  456678886543222 111 22345678888888866553   478999998


Q ss_pred             EccCCceeeee---ccCCceeEEEEcCCC-----CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC
Q 014007          245 HYASKRTKFIM---AHDSRIACFALTQDG-----QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (432)
Q Consensus       245 d~~~~~~~~~~---~~~~~i~~~~~sp~~-----~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  316 (432)
                      +-...+...+.   +.+++|.+++|+|..     ..+++.....+ +.++.+ +|+.+..-+.  ..-...++.+-++|.
T Consensus       160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~--L~FdP~CisYf~NGE  235 (1081)
T KOG1538|consen  160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRA--LNFDPCCISYFTNGE  235 (1081)
T ss_pred             cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeeccccc--CCCCchhheeccCCc
Confidence            76554433333   477899999999953     47788888888 888876 5555443332  224567899999999


Q ss_pred             EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEE
Q 014007          317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV  396 (432)
Q Consensus       317 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  396 (432)
                      +++.|+.|+.+++|-.+.-.                                    +.++...+..|+.++..|+++.++
T Consensus       236 y~LiGGsdk~L~~fTR~Gvr------------------------------------LGTvg~~D~WIWtV~~~PNsQ~v~  279 (1081)
T KOG1538|consen  236 YILLGGSDKQLSLFTRDGVR------------------------------------LGTVGEQDSWIWTVQAKPNSQYVV  279 (1081)
T ss_pred             EEEEccCCCceEEEeecCeE------------------------------------EeeccccceeEEEEEEccCCceEE
Confidence            99999999999999665432                                    223333456799999999999999


Q ss_pred             EEecCCeEEEEEecC
Q 014007          397 ILGMDGSFYRCQFDP  411 (432)
Q Consensus       397 ~~~~dg~v~iw~~~~  411 (432)
                      .|+.||++--|++-.
T Consensus       280 ~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  280 VGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEEccCeeehhhhHH
Confidence            999999999887744

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=8.7e-21  Score=163.25  Aligned_cols=240  Identities=17%  Similarity=0.228  Sum_probs=178.8

Q ss_pred             EEEEEcC-------CCCEEEEEc-CCcEEEEEcCCCeeEEEe-ec-----------------ccCcceeEEEEeeeCC-e
Q 014007           89 LHISFNQ-------DHGCFAAGT-DHGFRIYNCDPFREIFRR-DF-----------------ERGGGIGVVEMLFRCN-I  141 (432)
Q Consensus        89 ~~~~~s~-------~~~~l~~~~-~~~i~iw~~~~~~~~~~~-~~-----------------~~~~~~~v~~~~~~~~-~  141 (432)
                      .|+.|..       -|+++|.|+ +..|.|||++-....+.. .+                 ..+|...|..++|+.+ .
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            5667743       256999999 666999998632221100 00                 1257778888888775 4


Q ss_pred             EEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCc-cEEE---eCCeEEEEEcCCCe-eeEEEeeccC
Q 014007          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLK-LLHQIETIAN  215 (432)
Q Consensus       142 ~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~-~~~~~~~~~~  215 (432)
                      ..|++|+.|     .+|++||+.++++...+. |...|.++.|+|.. .+++   .|++|.+.|++... .-..++ ..+
T Consensus       257 nVLaSgsaD-----~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g  330 (463)
T KOG0270|consen  257 NVLASGSAD-----KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDG  330 (463)
T ss_pred             eeEEecCCC-----ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-ecc
Confidence            678999999     999999999999999999 89999999999964 4444   39999999998532 222332 345


Q ss_pred             CcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCc
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT  292 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~  292 (432)
                      .+..++|.+.....+++  +..||.|+-+|+|.  +.+.++.+|.+.|.++++++. ..+|++++.|+. |++|++..-.
T Consensus       331 ~VEkv~w~~~se~~f~~--~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~  407 (463)
T KOG0270|consen  331 EVEKVAWDPHSENSFFV--STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDS  407 (463)
T ss_pred             ceEEEEecCCCceeEEE--ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCC
Confidence            67789999998877665  46899999999998  577889999999999999874 457899999999 9999987544


Q ss_pred             eEEEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCCC
Q 014007          293 LLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       293 ~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      ..........-+...|+++.|+-. .|+.|+..+.++|||+.+...
T Consensus       408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            322221100113467777888654 567777888999999988764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=3.6e-21  Score=171.42  Aligned_cols=241  Identities=18%  Similarity=0.195  Sum_probs=195.9

Q ss_pred             cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccE--EE--eCCeEEEEEc
Q 014007          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII--VV--LEQKIFVYNF  201 (432)
Q Consensus       126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~d~~i~i~d~  201 (432)
                      .+|...|.++...+.|..+++|+.|     |+|+||.+.+|.+++++...+.|.+++|+|.+..  ++  .+..+.|.+.
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdD-----GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDD-----GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCC-----CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            3899999999999999999999999     9999999999999999999999999999997532  22  2333333332


Q ss_pred             CCC------------------------------------e-eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEE
Q 014007          202 ADL------------------------------------K-LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (432)
Q Consensus       202 ~~~------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~  244 (432)
                      .-|                                    + -+...-.+...+..+.|+-.|+++..++..+....|.|+
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence            111                                    0 011222456778889999999999888766677889999


Q ss_pred             EccCCcee-eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC
Q 014007          245 HYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD  323 (432)
Q Consensus       245 d~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  323 (432)
                      ++.....+ -+....+.|.++.|+|...+|++++...  |+|||+...++++++..+  ...|.+++.+|.|.-|+.++.
T Consensus       552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~tg--~kwiS~msihp~GDnli~gs~  627 (733)
T KOG0650|consen  552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLTG--SKWISSMSIHPNGDNLILGSY  627 (733)
T ss_pred             ecccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhcC--CeeeeeeeecCCCCeEEEecC
Confidence            98875444 3556678899999999999999988765  999999998888877754  368999999999999999999


Q ss_pred             CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCe
Q 014007          324 KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS  403 (432)
Q Consensus       324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  403 (432)
                      |+.+..||+.-....                                  ..+++.|...|+.|+|++.-.++++|+.||.
T Consensus       628 d~k~~WfDldlsskP----------------------------------yk~lr~H~~avr~Va~H~ryPLfas~sdDgt  673 (733)
T KOG0650|consen  628 DKKMCWFDLDLSSKP----------------------------------YKTLRLHEKAVRSVAFHKRYPLFASGSDDGT  673 (733)
T ss_pred             CCeeEEEEcccCcch----------------------------------hHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence            999999999865421                                  3457789999999999999999999999999


Q ss_pred             EEEEEe
Q 014007          404 FYRCQF  409 (432)
Q Consensus       404 v~iw~~  409 (432)
                      +.||.-
T Consensus       674 v~Vfhg  679 (733)
T KOG0650|consen  674 VIVFHG  679 (733)
T ss_pred             EEEEee
Confidence            999753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=2.5e-20  Score=157.21  Aligned_cols=249  Identities=14%  Similarity=0.183  Sum_probs=177.6

Q ss_pred             cceeEEEEeee--CCeEEEecCCCCCCCCCCeEEEEeCCC----------------CceeEEee-cCCceEEEEEec--C
Q 014007          128 GGIGVVEMLFR--CNILALVGGGPDPQYPLNKVMIWDDHQ----------------SRCIGELS-FRSEVRSVKLRR--D  186 (432)
Q Consensus       128 ~~~~v~~~~~~--~~~~~~~s~~~d~~~~~~~v~iwd~~~----------------~~~~~~~~-~~~~v~~~~~~~--~  186 (432)
                      |...+..+.-.  ++..+.++-+..     |.|+|||+..                .+++.++. |...=++++|+|  .
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~-----G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~  224 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSEN-----GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT  224 (440)
T ss_pred             cccccceeeecccCCcceeeeeccc-----CcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence            34444444333  355677777777     9999999742                23556666 888889999999  4


Q ss_pred             ccEEEe--CCeEEEEEcCCCeee---EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC---ceeeeeccC
Q 014007          187 RIIVVL--EQKIFVYNFADLKLL---HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHD  258 (432)
Q Consensus       187 ~~~~~~--d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~  258 (432)
                      |.++..  -+.|++|...++.-.   ..+.+|...|..++|+|..+.++..|  +.||.|+|||++.+   ......+|.
T Consensus       225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc--S~DgsIrIWDiRs~~~~~~~~~kAh~  302 (440)
T KOG0302|consen  225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC--SCDGSIRIWDIRSGPKKAAVSTKAHN  302 (440)
T ss_pred             cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEee--ecCceEEEEEecCCCccceeEeeccC
Confidence            555543  458999998876432   23456888899999999988876443  57999999999996   344568999


Q ss_pred             CceeEEEEcCCCCEEEEEcCCCceEEEEECCC---CceEEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEecC
Q 014007          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLD---GTLLQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~---~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~  334 (432)
                      +.|+.|.|+..-.+||+|+.||+ ++|||++.   ++++..|+.  |..+|+++.|+|. ...|++++.|..|.|||+..
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             CceeeEEccCCcceeeecCCCce-EEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            99999999998889999999999 99999986   567888886  6799999999985 45788888999999999976


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC--CCceEEEEccC-CCEEEEEecCCeEE
Q 014007          335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE--GSPYIVAFGHQ-KNTVVILGMDGSFY  405 (432)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~-~~~l~~~~~dg~v~  405 (432)
                      ..........          ....+..+-|+         .+-.|.  ..|..|.|++. ..+|++.+.||.-.
T Consensus       380 E~D~ee~~~~----------a~~~L~dlPpQ---------LLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnV  434 (440)
T KOG0302|consen  380 EADEEEIDQE----------AAEGLQDLPPQ---------LLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNV  434 (440)
T ss_pred             cCChhhhccc----------cccchhcCCce---------eEEEecchhHhhhheeccCCCCeEEEecccceeE
Confidence            5421111000          00001111111         122343  46888999985 44777888888533

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.5e-21  Score=178.75  Aligned_cols=233  Identities=14%  Similarity=0.199  Sum_probs=172.6

Q ss_pred             EEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc----eeEEee----cCCceEEEEEec-CccEEE---eCCeEEEEE
Q 014007          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS----FRSEVRSVKLRR-DRIIVV---LEQKIFVYN  200 (432)
Q Consensus       133 ~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~----~~~~~~----~~~~v~~~~~~~-~~~~~~---~d~~i~i~d  200 (432)
                      ..+...++...++.++.      ..+++|.+....    +...++    ....+..+.|.. +..+++   ..|.|.+||
T Consensus        43 nAIs~nr~~~qiv~AGr------s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   43 NAISVNRDINQIVVAGR------SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD  116 (839)
T ss_pred             ceEeecCCcceeEEecc------cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence            34445566666666655      467777655432    111111    122345567764 345555   389999999


Q ss_pred             cCC---CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcC-CCCEEEE
Q 014007          201 FAD---LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQ-DGQLLAT  275 (432)
Q Consensus       201 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp-~~~~l~~  275 (432)
                      +..   .+.+..+..|...+..+.|++-..++++  +|+.||.|++||++.+ ...++.+....|..|+|+| .+.++++
T Consensus       117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~ili--SGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s  194 (839)
T KOG0269|consen  117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILI--SGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFAS  194 (839)
T ss_pred             cCccccchhhhHhhhhccceeeeeeccCCccEEE--ecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEE
Confidence            987   5667788889999999999998887654  5779999999999984 4566778888999999999 6788999


Q ss_pred             EcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007          276 SSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (432)
Q Consensus       276 ~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (432)
                      +...|. +++||++.. ++...+.  .|.++|.++.|+|++.+||+|+.|+.|+|||..+.+.-.               
T Consensus       195 ~~dsG~-lqlWDlRqp~r~~~k~~--AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~---------------  256 (839)
T KOG0269|consen  195 IHDSGY-LQLWDLRQPDRCEKKLT--AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP---------------  256 (839)
T ss_pred             ecCCce-EEEeeccCchhHHHHhh--cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc---------------
Confidence            999999 999999875 4455555  478999999999999999999999999999999766211               


Q ss_pred             CceeEeecccceeecceeeEEEEec-CCCceEEEEccCCC-EEEEEec--CCeEEEEEecC
Q 014007          355 SLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIVAFGHQKN-TVVILGM--DGSFYRCQFDP  411 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~-~l~~~~~--dg~v~iw~~~~  411 (432)
                                          ....+ -.+|..|+|-|... +||+++.  |-.|+||++..
T Consensus       257 --------------------~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  257 --------------------KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             --------------------eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence                                01111 24688999999655 5666655  88899999854

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=5.6e-20  Score=151.68  Aligned_cols=246  Identities=13%  Similarity=0.115  Sum_probs=185.0

Q ss_pred             EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeee
Q 014007          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLL  207 (432)
Q Consensus       132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~  207 (432)
                      ..++.|++.|.+++.|..|     |.|.|||+.+...-+.+. |..+|.+++|++||+.+.+   |..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccC-----CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence            7789999999999999999     999999999988777887 9999999999999999884   889999999999999


Q ss_pred             EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeecc-----CCceeEEEEcCCCCEEEEEcCCCce
Q 014007          208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-----DSRIACFALTQDGQLLATSSTKGTL  282 (432)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~~~~dg~~  282 (432)
                      +.+. ...+|..+.|+|...+..+++.  .+..-.+.++.......+...     +..-.+..|.+.|+++++|...|. 
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~~--~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk-  176 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVATI--MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK-  176 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEEE--ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-
Confidence            9986 5678999999999988888763  344455555554332222211     112234468999999999999999 


Q ss_pred             EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeec
Q 014007          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV  362 (432)
Q Consensus       283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (432)
                      +.++|..+.+++..++.. ....|..+.|+..|++|+.-+.|+.|+.|+++.-.....-            .-.... -.
T Consensus       177 llv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~------------~e~e~~-~K  242 (405)
T KOG1273|consen  177 LLVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD------------GEVEPE-HK  242 (405)
T ss_pred             EEEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc------------CCcChh-HH
Confidence            999999999999998853 2367999999999999999999999999998743211000            000000 00


Q ss_pred             ccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec-CCeEEEEEecC
Q 014007          363 LPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM-DGSFYRCQFDP  411 (432)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~  411 (432)
                      +.+..+           .-.=.+++||.+|.+++.++. -..+|||.-..
T Consensus       243 ~qDvVN-----------k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~  281 (405)
T KOG1273|consen  243 LQDVVN-----------KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI  281 (405)
T ss_pred             HHHHHh-----------hhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence            000000           012346899999999988775 46699987544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.86  E-value=2.5e-19  Score=146.55  Aligned_cols=203  Identities=16%  Similarity=0.244  Sum_probs=157.7

Q ss_pred             CcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCc----------eeEEe--e----cCCceEEEEEecC--c
Q 014007          127 GGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSR----------CIGEL--S----FRSEVRSVKLRRD--R  187 (432)
Q Consensus       127 ~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~----------~~~~~--~----~~~~v~~~~~~~~--~  187 (432)
                      .|...|.++...+ .+.++++|+.|     |.|.+||++...          .+..+  .    |+-.|..+.|-|-  |
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgad-----gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGAD-----GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCC-----ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence            3566666666544 58899999999     999999987532          11111  1    5667999999883  4


Q ss_pred             cEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC-cEEEEeecCCCCcEEEEEccCCce-eeeeccCCceeE
Q 014007          188 IIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIAC  263 (432)
Q Consensus       188 ~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~  263 (432)
                      .+..  .|.++++||..+.+....++ ..+.|..-+++|-.. +.+++ +|..+-.|++.|+.++.. ..+.+|...|.+
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA-~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIA-AGTRDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEE-EecCCCcEEEEeccCCcceeeeccccCceEE
Confidence            4444  39999999999988777775 355677778888665 44444 577999999999999654 568899999999


Q ss_pred             EEEcCCCC-EEEEEcCCCceEEEEECCCC-ceEEEEEe------------CCCcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007          264 FALTQDGQ-LLATSSTKGTLVRIFNTLDG-TLLQEVRR------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (432)
Q Consensus       264 ~~~sp~~~-~l~~~~~dg~~i~vwd~~~~-~~~~~~~~------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  329 (432)
                      +.|+|... .|++|+.||. |++||++.. .|...+..            ..|.+.+..++|+.+|.++++++.|..+++
T Consensus       194 V~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV  272 (397)
T ss_pred             EEeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence            99999765 5789999999 999999864 34444432            236678999999999999999999999999


Q ss_pred             EEecCCCC
Q 014007          330 FNLKVNSG  337 (432)
Q Consensus       330 wd~~~~~~  337 (432)
                      |+..+++.
T Consensus       273 wn~~~G~n  280 (397)
T KOG4283|consen  273 WNMESGRN  280 (397)
T ss_pred             eecccCcc
Confidence            99999874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3.5e-21  Score=183.84  Aligned_cols=244  Identities=14%  Similarity=0.208  Sum_probs=194.3

Q ss_pred             CCCCeEEEEEcCCCCE----EEEEcCCc-EEEEEcCCC----eeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCC
Q 014007           84 PPPTLLHISFNQDHGC----FAAGTDHG-FRIYNCDPF----REIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQY  153 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~----l~~~~~~~-i~iw~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~  153 (432)
                      ...+-+.++|.+.|..    ||.|.++| |.+|+....    +......+. .|.+.|..+.|++... .+++|+.+   
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~---  138 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADD---  138 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCC---
Confidence            3557789999988775    66676665 999997642    222223343 6999999999998755 99999999   


Q ss_pred             CCCeEEEEeCCCCceeEEee---cCCceEEEEEecCccEE-Ee---CCeEEEEEcCCCeeeEEEeeccC--CcceEEEec
Q 014007          154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIV-VL---EQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQ  224 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~-~~---d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~  224 (432)
                        |.|.|||+.+-+.-..+.   ..+.|.+++|+..-..+ ++   +|++.|||++..+.+..+..+..  .+..++|+|
T Consensus       139 --geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP  216 (1049)
T KOG0307|consen  139 --GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP  216 (1049)
T ss_pred             --CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence              999999998754433332   56789999999865444 42   78999999999887777765544  355799999


Q ss_pred             CCCcEEEEeec-CCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeC
Q 014007          225 GVGSLVLVCPG-LQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (432)
Q Consensus       225 ~~~~~~~~~~g-~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~  300 (432)
                      +....++++++ .....|.+||++.  ..++.+.+|...|.++.|++.+ ++|++++.|+. |.+|+..+++.+..+...
T Consensus       217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~~  295 (1049)
T KOG0307|consen  217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPAQ  295 (1049)
T ss_pred             CCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCCC
Confidence            98877666544 2456799999987  5677889999999999999955 89999999999 999999999999999863


Q ss_pred             CCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCC
Q 014007          301 ADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       301 ~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~  336 (432)
                        ...+..+.|+|... .|++++-||.|.||.+....
T Consensus       296 --~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  296 --GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             --CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence              47899999999766 78888999999999998765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=3.3e-18  Score=155.26  Aligned_cols=270  Identities=12%  Similarity=0.124  Sum_probs=178.8

Q ss_pred             EcCCcEEEEEcCC-CeeEEEeecccCcceeEEEEeeeCCeEEEecC-CCCCCCCCCeEEEEeCCC-Cce--eEEeecCCc
Q 014007          103 GTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGG-GPDPQYPLNKVMIWDDHQ-SRC--IGELSFRSE  177 (432)
Q Consensus       103 ~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~-~~d~~~~~~~v~iwd~~~-~~~--~~~~~~~~~  177 (432)
                      +.+++|.+|++++ ++......+.  .......+.+++++..++.+ ..+     +.|.+|++.. ++.  +........
T Consensus         9 ~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~~~~~~   81 (330)
T PRK11028          9 PESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAESPLPGS   81 (330)
T ss_pred             CCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeeecCCCC
Confidence            3467799999964 3433334453  33456678889988766544 445     8999999863 332  333334556


Q ss_pred             eEEEEEecCccEEEe----CCeEEEEEcCC-Ce---eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-
Q 014007          178 VRSVKLRRDRIIVVL----EQKIFVYNFAD-LK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-  248 (432)
Q Consensus       178 v~~~~~~~~~~~~~~----d~~i~i~d~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-  248 (432)
                      ...++++|+++++++    ++.|.+|++.+ +.   .+..+.. ......++++|+++.++++.  ..++.|.+||++. 
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~--~~~~~v~v~d~~~~  158 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPC--LKEDRIRLFTLSDD  158 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEee--CCCCEEEEEEECCC
Confidence            788999999987773    78999999964 32   2222222 22345688999998776554  4679999999976 


Q ss_pred             Cceee-----ee-ccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCC--Cc--eEEEEEeCC----CcCceEEEEECC
Q 014007          249 KRTKF-----IM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLD--GT--LLQEVRRGA----DRAEIYSLAFSS  313 (432)
Q Consensus       249 ~~~~~-----~~-~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~--~~--~~~~~~~~~----~~~~i~~~~~s~  313 (432)
                      +.+..     .. ........++|+|+|++|+++.. ++. |.+||+..  ++  .+..+....    +......+.|+|
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence            32211     11 12345678999999999988876 777 99999973  33  233333211    112234689999


Q ss_pred             CCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007          314 NAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (432)
Q Consensus       314 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  392 (432)
                      +|++|+++. .++.|.+|++.......                 .+              +..... ......++|+|||
T Consensus       238 dg~~lyv~~~~~~~I~v~~i~~~~~~~-----------------~~--------------~~~~~~-~~~p~~~~~~~dg  285 (330)
T PRK11028        238 DGRHLYACDRTASLISVFSVSEDGSVL-----------------SF--------------EGHQPT-ETQPRGFNIDHSG  285 (330)
T ss_pred             CCCEEEEecCCCCeEEEEEEeCCCCeE-----------------EE--------------eEEEec-cccCCceEECCCC
Confidence            999999885 47899999997543110                 00              111111 1235678999999


Q ss_pred             CEEEEEec-CCeEEEEEecCCCCC
Q 014007          393 NTVVILGM-DGSFYRCQFDPVNGG  415 (432)
Q Consensus       393 ~~l~~~~~-dg~v~iw~~~~~~~~  415 (432)
                      ++|++++. +++|.+|+++..+|.
T Consensus       286 ~~l~va~~~~~~v~v~~~~~~~g~  309 (330)
T PRK11028        286 KYLIAAGQKSHHISVYEIDGETGL  309 (330)
T ss_pred             CEEEEEEccCCcEEEEEEcCCCCc
Confidence            99998886 899999999876654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=4.8e-19  Score=151.00  Aligned_cols=286  Identities=15%  Similarity=0.175  Sum_probs=199.7

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCC-------eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007           84 PPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPF-------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (432)
                      ...+|..+.|.++.. .||+|+ |..|+||.++..       +..+...+. +|...|..+.|++++..+++|+++    
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~gelLASg~D~----   86 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGELLASGGDG----   86 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcCeeeecCCC----
Confidence            356899999999876 889887 667999988532       334455665 899999999999999999999999    


Q ss_pred             CCeEEEEeCC--------C-----C---ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc
Q 014007          155 LNKVMIWDDH--------Q-----S---RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA  214 (432)
Q Consensus       155 ~~~v~iwd~~--------~-----~---~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~  214 (432)
                       |.|.+|-..        +     .   ...+.+. |...|..++|++++.++++   |+.+++||+..|+....+..|.
T Consensus        87 -g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~  165 (434)
T KOG1009|consen   87 -GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE  165 (434)
T ss_pred             -ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc
Confidence             999999755        2     1   1223333 8899999999999999984   9999999999999999999999


Q ss_pred             CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee------ee--------------ccC----CceeEEEEcCCC
Q 014007          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF------IM--------------AHD----SRIACFALTQDG  270 (432)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~------~~--------------~~~----~~i~~~~~sp~~  270 (432)
                      +-+..++|.|.+.++...   +.|...+.+.+....+..      +.              -|+    .-...++|+|+|
T Consensus       166 ~yvqgvawDpl~qyv~s~---s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG  242 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQYVASK---SSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG  242 (434)
T ss_pred             cccceeecchhhhhhhhh---ccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence            999999999988755332   255556665554421100      00              011    124567899999


Q ss_pred             CEEEEEcC----CCc----eEEEEECCCC-ceEEEEEeCCCcCceEEEEECC------------------CCCEEEEEeC
Q 014007          271 QLLATSST----KGT----LVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSS------------------NAQWLAVSSD  323 (432)
Q Consensus       271 ~~l~~~~~----dg~----~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~------------------~~~~l~~~~~  323 (432)
                      .+|++.+.    .+.    ..++|+-+.. ++...+..  ...+...+.|+|                  -+-.+|.++ 
T Consensus       243 ~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-  319 (434)
T KOG1009|consen  243 SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-  319 (434)
T ss_pred             cEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEEEee-
Confidence            99987542    222    0355653322 12222221  123344444443                  223455555 


Q ss_pred             CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCe
Q 014007          324 KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS  403 (432)
Q Consensus       324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  403 (432)
                      .+.|+|||.++..++                                  ...-..|-..|+.++|++||..|+..+.||.
T Consensus       320 ~~svyvydtq~~~P~----------------------------------~~v~nihy~~iTDiaws~dg~~l~vSS~DGy  365 (434)
T KOG1009|consen  320 KNSVYVYDTQTLEPL----------------------------------AVVDNIHYSAITDIAWSDDGSVLLVSSTDGF  365 (434)
T ss_pred             cceEEEeccccccce----------------------------------EEEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence            567999999887642                                  1223456667999999999999999999999


Q ss_pred             EEEEEecCCCCC
Q 014007          404 FYRCQFDPVNGG  415 (432)
Q Consensus       404 v~iw~~~~~~~~  415 (432)
                      .-+-.+++.+-+
T Consensus       366 CS~vtfe~~elg  377 (434)
T KOG1009|consen  366 CSLVTFEPWELG  377 (434)
T ss_pred             eEEEEEcchhcc
Confidence            998888765444

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.85  E-value=6.3e-20  Score=160.08  Aligned_cols=266  Identities=10%  Similarity=0.123  Sum_probs=192.1

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCCCc--eeEEee--
Q 014007           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS--  173 (432)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~~~--~~~~~~--  173 (432)
                      ++++.+.+.++|||+..........- ......+..+.|.... +.+++.+.|     ..|++|. +.|+  .+....  
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~-~t~~pg~~s~~w~~~n~lvvas~~gd-----k~~~~~~-K~g~~~~Vp~~~k~   77 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVH-QTAEPGDFSFNWQRRNFLVVASMAGD-----KVMRIKE-KDGKTPEVPRVRKL   77 (673)
T ss_pred             eeeeccCCceEEeecccccCcccccc-CCCCCcceeeeccccceEEEeecCCc-----eeEEEec-ccCCCCccceeecc
Confidence            45555566799999865443311110 0123347888887765 666777777     8999997 3343  122222  


Q ss_pred             cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc
Q 014007          174 FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (432)
Q Consensus       174 ~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~  250 (432)
                      ....-.|++......++++   .+.|+|||++...+.+.++.|...|+++.+.....+++-   ++..|.|.|..+.++.
T Consensus        78 ~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAs---vs~gGdiiih~~~t~~  154 (673)
T KOG4378|consen   78 TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIAS---VSDGGDIIIHGTKTKQ  154 (673)
T ss_pred             ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEE---eccCCcEEEEecccCc
Confidence            2334556666566677775   679999999976677778899999999998888775543   4467999999998866


Q ss_pred             eeeeeccC--CceeEEEEcCCCC-EEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCe
Q 014007          251 TKFIMAHD--SRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGT  326 (432)
Q Consensus       251 ~~~~~~~~--~~i~~~~~sp~~~-~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~  326 (432)
                      ..+...|.  ..|.-+.|+|..+ +|.+++.+|. |.+||+....++..+.. .|..+...|+|+|.. .+|++.+.|..
T Consensus       155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dkk  232 (673)
T KOG4378|consen  155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDKK  232 (673)
T ss_pred             cccceecCCCCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhh-hccCCcCcceecCCccceEEEecccce
Confidence            55444443  4567899999765 4567888999 99999987777766654 388999999999965 57788899999


Q ss_pred             EEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEE
Q 014007          327 VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYR  406 (432)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i  406 (432)
                      |.+||+...+....+                                    .-+.+.+.|+|+++|.+|+.|+..|.|+.
T Consensus       233 i~~yD~~s~~s~~~l------------------------------------~y~~Plstvaf~~~G~~L~aG~s~G~~i~  276 (673)
T KOG4378|consen  233 INIYDIRSQASTDRL------------------------------------TYSHPLSTVAFSECGTYLCAGNSKGELIA  276 (673)
T ss_pred             EEEeeccccccccee------------------------------------eecCCcceeeecCCceEEEeecCCceEEE
Confidence            999999976632211                                    12346889999999999999999999999


Q ss_pred             EEecCC
Q 014007          407 CQFDPV  412 (432)
Q Consensus       407 w~~~~~  412 (432)
                      |++...
T Consensus       277 YD~R~~  282 (673)
T KOG4378|consen  277 YDMRST  282 (673)
T ss_pred             EecccC
Confidence            998553

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=4.8e-19  Score=152.64  Aligned_cols=229  Identities=16%  Similarity=0.149  Sum_probs=170.6

Q ss_pred             CeEEEecCCCCCCCCCCeEEEEeCCCCce---e----------------EE--e-ecCCceEEEEEecCccEE-Ee---C
Q 014007          140 NILALVGGGPDPQYPLNKVMIWDDHQSRC---I----------------GE--L-SFRSEVRSVKLRRDRIIV-VL---E  193 (432)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~---~----------------~~--~-~~~~~v~~~~~~~~~~~~-~~---d  193 (432)
                      .++++|.|..+     ..|.|||+.-...   .                +.  - .|...|.+++|+..-+-+ ++   |
T Consensus       191 ~gNyvAiGtmd-----p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD  265 (463)
T KOG0270|consen  191 AGNYVAIGTMD-----PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD  265 (463)
T ss_pred             CcceEEEeccC-----ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence            46789999988     8999999742110   0                00  1 166677888898875544 43   8


Q ss_pred             CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCC-C
Q 014007          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG-Q  271 (432)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~-~  271 (432)
                      .+|++||+.++++...+..|.+.|..+.|+|.....++  +|+.|++|.+.|.+. ......-...+.|..++|.|.. .
T Consensus       266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LL--sGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~  343 (463)
T KOG0270|consen  266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLL--SGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN  343 (463)
T ss_pred             ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEE--eccccceEEeeeccCccccCceEEeccceEEEEecCCCce
Confidence            89999999999999999999999999999999876654  477999999999995 2222222346789999999854 5


Q ss_pred             EEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 014007          272 LLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP  349 (432)
Q Consensus       272 ~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  349 (432)
                      .++++..||+ |+-+|+|.. +++.+++.  |.++|.++++++.- .+|++++.|+.|++|++..........       
T Consensus       344 ~f~~~tddG~-v~~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-------  413 (463)
T KOG0270|consen  344 SFFVSTDDGT-VYYFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-------  413 (463)
T ss_pred             eEEEecCCce-EEeeecCCCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-------
Confidence            6778889999 999999975 88888885  67899999998854 468889999999999998655211000       


Q ss_pred             CCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC-CEEEEEecCCeEEEEEecC
Q 014007          350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK-NTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~  411 (432)
                                              ..++  -+...|.++.|+- -+|+.|+..+.++||++-.
T Consensus       414 ------------------------~~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  414 ------------------------HSFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             ------------------------cccc--ccceeecccCCCcceEEEecCccceEEEeeccc
Confidence                                    0010  1224556666643 4688899999999999844

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=4.7e-19  Score=144.60  Aligned_cols=303  Identities=16%  Similarity=0.190  Sum_probs=198.4

Q ss_pred             CCEEEEEc-----CCcEEEEEcCCCeeE-EEeecccCcceeEEEEeeeCC-eEEEecCCCCCCC--CCCeEEEEeCCCC-
Q 014007           97 HGCFAAGT-----DHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQY--PLNKVMIWDDHQS-  166 (432)
Q Consensus        97 ~~~l~~~~-----~~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~--~~~~v~iwd~~~~-  166 (432)
                      .-.|.+|+     ++.|.+.+++..... ..+.|. ++...|+.++-+|- ...|+++-.+..-  ....+.||.+... 
T Consensus        26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~-h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~  104 (370)
T KOG1007|consen   26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFF-HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPL  104 (370)
T ss_pred             ceEEEEeccccCCcceeEEEEecCccchhhhhhhh-cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccccc
Confidence            33555664     555888877654433 334454 78889999988774 3444444332110  0135789987543 


Q ss_pred             --------ceeEEee--cCCceEEEEEecCccEEE--eCCeEEEEEcCCCee-eEEEee-----ccCCcceEEEecCCCc
Q 014007          167 --------RCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKL-LHQIET-----IANPKGLCAVSQGVGS  228 (432)
Q Consensus       167 --------~~~~~~~--~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~  228 (432)
                              +++..+.  +-+.|.|+.|.|++..++  .|..|.+|++..+.. ...+..     +....+.-+|+|..+.
T Consensus       105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg  184 (370)
T KOG1007|consen  105 GQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG  184 (370)
T ss_pred             CccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence                    2344444  456899999999988877  389999999988655 333321     2344556788885444


Q ss_pred             EEEEeecCCCCcEEEEEccCCc-e-eeeeccCCceeEEEEcCCCC-EEEEEcCCCceEEEEECCCCc-eEEEEEeCCCcC
Q 014007          229 LVLVCPGLQKGQVRVEHYASKR-T-KFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRA  304 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~-~-~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~~i~vwd~~~~~-~~~~~~~~~~~~  304 (432)
                      ..+++.  .|+++..||+++.. . ..-.+|...|..+.|+|+.+ +|++|+.||. |+|||.+..+ ++.++.+  |..
T Consensus       185 nqv~tt--~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk~pv~el~~--HsH  259 (370)
T KOG1007|consen  185 NQVATT--SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTKFPVQELPG--HSH  259 (370)
T ss_pred             ceEEEe--CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCCccccccCC--Cce
Confidence            444542  58999999999833 2 33458999999999999764 6889999999 9999998654 5666664  668


Q ss_pred             ceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCc
Q 014007          305 EIYSLAFSSN-AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP  383 (432)
Q Consensus       305 ~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  383 (432)
                      .|+++.|+|. .++|++|+.|..|.+|....-...+.+...-.........+..-.+ .+     ..-.+.++..|++.|
T Consensus       260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~k-pL-----~dg~l~tydehEDSV  333 (370)
T KOG1007|consen  260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVK-PL-----QDGQLETYDEHEDSV  333 (370)
T ss_pred             EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcc-cc-----cccccccccccccce
Confidence            9999999995 5678899999999999876544222211000000000000000000 00     011255788899999


Q ss_pred             eEEEEcc-CCCEEEEEecCCeEEEEEecC
Q 014007          384 YIVAFGH-QKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       384 ~~~~~s~-~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .+++||. |.-.+|+-+.||++.|=++..
T Consensus       334 Y~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  334 YALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             EEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            9999998 555677899999999866543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.3e-20  Score=179.90  Aligned_cols=276  Identities=12%  Similarity=0.168  Sum_probs=196.3

Q ss_pred             EEEEcCCCC-EEEEEc-----------CCcEEEEEcCCCee----EEEeecccCcceeEEEEeeeCCeEE----EecCCC
Q 014007           90 HISFNQDHG-CFAAGT-----------DHGFRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRCNILA----LVGGGP  149 (432)
Q Consensus        90 ~~~~s~~~~-~l~~~~-----------~~~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~----~~s~~~  149 (432)
                      .++|+|++. +||+|+           +..+-||.++....    .....+.  .......++|.+.+..    +++|..
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeecccc
Confidence            478999987 666663           22255665532211    2223332  5567788899876654    889999


Q ss_pred             CCCCCCCeEEEEeCCC---C---ceeEEee-cCCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEEe--eccCC
Q 014007          150 DPQYPLNKVMIWDDHQ---S---RCIGELS-FRSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQIE--TIANP  216 (432)
Q Consensus       150 d~~~~~~~v~iwd~~~---~---~~~~~~~-~~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~--~~~~~  216 (432)
                      |     |.|.+||...   +   ..+.++. |.+.|..+.|++... ++++   ||.|.|||+...+......  .....
T Consensus        89 d-----G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e  163 (1049)
T KOG0307|consen   89 D-----GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE  163 (1049)
T ss_pred             C-----CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence            8     9999999765   2   2344555 999999999999755 7774   8899999998754433331  13456


Q ss_pred             cceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCC--ceeEEEEcCCC-CEEEEEcCCCc--eEEEEECCC
Q 014007          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDS--RIACFALTQDG-QLLATSSTKGT--LVRIFNTLD  290 (432)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~--~i~~~~~sp~~-~~l~~~~~dg~--~i~vwd~~~  290 (432)
                      |.+++|+..-.++ ++ +++.+|.+.|||++.++ +..+..+..  .+..++|+|+. ..|++++.|..  .|.+||+|.
T Consensus       164 I~~lsWNrkvqhI-LA-S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  164 IKCLSWNRKVSHI-LA-SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             ceEeccchhhhHH-hh-ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence            6677777665554 34 46689999999999853 334444433  47789999976 35666665542  299999986


Q ss_pred             C-ceEEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceee
Q 014007          291 G-TLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS  368 (432)
Q Consensus       291 ~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (432)
                      - ..++++..  |...|.++.|++.+ ++|++++.|++|.+|+.++++.+..                            
T Consensus       242 assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~----------------------------  291 (1049)
T KOG0307|consen  242 ASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE----------------------------  291 (1049)
T ss_pred             cCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee----------------------------
Confidence            4 45666653  77899999999966 8999999999999999999884322                            


Q ss_pred             cceeeEEEEecCCCceEEEEccCCC-EEEEEecCCeEEEEEecC
Q 014007          369 SEWSVAQFRLVEGSPYIVAFGHQKN-TVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~  411 (432)
                             +....+.+..+.|+|... .+++++-||.|-||.+..
T Consensus       292 -------~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  292 -------LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             -------cCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence                   223345677899999554 888899999999998854

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=3.6e-19  Score=148.53  Aligned_cols=271  Identities=14%  Similarity=0.164  Sum_probs=189.9

Q ss_pred             CEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-
Q 014007           98 GCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-  173 (432)
Q Consensus        98 ~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-  173 (432)
                      ..+|++..++ |+|||..+++..  ..++ ++...+..+.|..  ....+.+++.|     |+|++||++.......+. 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l--~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssD-----G~Vr~wD~Rs~~e~a~~~~  112 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLL--EEFK-GPPATTNGVRFISCDSPHGVISCSSD-----GTVRLWDIRSQAESARISW  112 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhh--heec-CCCCcccceEEecCCCCCeeEEeccC-----CeEEEEEeecchhhhheec
Confidence            4677776555 999999886655  5565 6777777777765  45667788888     999999999876655554 


Q ss_pred             --cC-CceEEEEEecCccEEEe-------CCeEEEEEcCCCee-eEEE-eeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007          174 --FR-SEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKL-LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       174 --~~-~~v~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (432)
                        +. .+..+++.+-.+.+++.       +-.|.+||++..+. +..+ ..|.+.|+.+.|+|....+++  +|+.||.|
T Consensus       113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl--SGSvDGLv  190 (376)
T KOG1188|consen  113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL--SGSVDGLV  190 (376)
T ss_pred             cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE--eecccceE
Confidence              33 46677777655666652       66899999998665 4443 678999999999999888765  47799999


Q ss_pred             EEEEccCC----ceeeeeccCCceeEEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCc----------Cce
Q 014007          242 RVEHYASK----RTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR----------AEI  306 (432)
Q Consensus       242 ~i~d~~~~----~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~----------~~i  306 (432)
                      .+||+...    .+.....|...|.++.|+.++ +.|.+-+..++ ..+|+++.+.+...+......          ..+
T Consensus       191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            99999873    334455688889999999877 45788888888 999999998866555432100          111


Q ss_pred             EEEEECCCCCEEEEEeC-CCeEEEEEecC---CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe-cCC
Q 014007          307 YSLAFSSNAQWLAVSSD-KGTVHVFNLKV---NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEG  381 (432)
Q Consensus       307 ~~~~~s~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  381 (432)
                      ...-...++..++.++. -|...++-+..   +....                                ..+.+.+ |..
T Consensus       270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~--------------------------------~~a~l~g~~~e  317 (376)
T KOG1188|consen  270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLT--------------------------------EPAILQGGHEE  317 (376)
T ss_pred             eecccCCCcceEEEeccccCceeEEEeeecccccccC--------------------------------ccccccCCcHH
Confidence            11221224444544443 55555555442   22111                                1223444 667


Q ss_pred             CceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .|.++.|...+..+.+||+||.+.+|..+-
T Consensus       318 iVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  318 IVRDILFDVKNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             HHHHHhhhcccceeeccCCCceEEEEecCC
Confidence            889999998999999999999999999643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=6.9e-19  Score=145.83  Aligned_cols=234  Identities=15%  Similarity=0.142  Sum_probs=172.4

Q ss_pred             EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC--------------ceeEEeecCCceEEEEEe-------cCccEE
Q 014007          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--------------RCIGELSFRSEVRSVKLR-------RDRIIV  190 (432)
Q Consensus       132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~--------------~~~~~~~~~~~v~~~~~~-------~~~~~~  190 (432)
                      ...+.|+|||..+++...|     ..+.+|++...              .....+.....|..-+|-       |+..++
T Consensus        52 ~kgckWSPDGSciL~~sed-----n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~  126 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSED-----NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF  126 (406)
T ss_pred             hccceeCCCCceEEeeccc-----CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence            3467799999999999999     99999987421              112222356778877775       455566


Q ss_pred             Ee---CCeEEEEEcCCCeeeEEEeec--cC---CcceEEEecCCCcEEEEeecCCCCcEEEEEc-cCCc---eeee----
Q 014007          191 VL---EQKIFVYNFADLKLLHQIETI--AN---PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY-ASKR---TKFI----  254 (432)
Q Consensus       191 ~~---d~~i~i~d~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~-~~~~---~~~~----  254 (432)
                      ++   +.-|++||.-+|+....+...  .+   ...+++|+|||.+++   +| ....|++||+ +.++   ....    
T Consensus       127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf---aG-ykrcirvFdt~RpGr~c~vy~t~~~~  202 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF---AG-YKRCIRVFDTSRPGRDCPVYTTVTKG  202 (406)
T ss_pred             eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe---ec-ccceEEEeeccCCCCCCcchhhhhcc
Confidence            53   778999999999887766542  22   234799999999775   34 7899999999 4332   1222    


Q ss_pred             -eccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEE
Q 014007          255 -MAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFN  331 (432)
Q Consensus       255 -~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd  331 (432)
                       .+..+-|.+++|+| +...++.|+.... +-|+.-..+.++..+.+  |.+.|+.++|.++|+.|.+|. .|-.|..||
T Consensus       203 k~gq~giisc~a~sP~~~~~~a~gsY~q~-~giy~~~~~~pl~llgg--h~gGvThL~~~edGn~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  203 KFGQKGIISCFAFSPMDSKTLAVGSYGQR-VGIYNDDGRRPLQLLGG--HGGGVTHLQWCEDGNKLFSGARKDDKILCWD  279 (406)
T ss_pred             cccccceeeeeeccCCCCcceeeecccce-eeeEecCCCCceeeecc--cCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence             23467799999999 5558999999888 88888778888877774  779999999999999999998 678899999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC-CceE--EEEccCCCEEEEEecCCeEEEEE
Q 014007          332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-SPYI--VAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      ++..+..                                  +..+..|.+ .-..  ....|++++|++|+.||.|++|+
T Consensus       280 iR~~~~p----------------------------------v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd  325 (406)
T KOG2919|consen  280 IRYSRDP----------------------------------VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD  325 (406)
T ss_pred             ehhccch----------------------------------hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence            9986522                                  111223322 1122  34468999999999999999999


Q ss_pred             ecC
Q 014007          409 FDP  411 (432)
Q Consensus       409 ~~~  411 (432)
                      +..
T Consensus       326 lk~  328 (406)
T KOG2919|consen  326 LKD  328 (406)
T ss_pred             cCC
Confidence            854

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.2e-16  Score=150.58  Aligned_cols=288  Identities=20%  Similarity=0.323  Sum_probs=216.9

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe-eEEEeecccCcceeEEEEee-eCCeE-EEec-CCCCCCCC
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLF-RCNIL-ALVG-GGPDPQYP  154 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~s-~~~d~~~~  154 (432)
                      ....|...|.++.|.+.+..++.++ ++.+.+|+..... ..  ..+...+...+..+.+ .+++. .++. +..+    
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----  133 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI--KSLEGLHDSSVSKLALSSPDGNSILLASSSLD----  133 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE--EEEeccCCCceeeEEEECCCcceEEeccCCCC----
Confidence            5678999999999999999988887 6669999987765 22  3333112235555555 66665 4444 3447    


Q ss_pred             CCeEEEEeCCC-CceeEEee-cCCceEEEEEecCccEEE--e--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          155 LNKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV--L--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       155 ~~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~--~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                       +.+.+|+... ......+. |...|..++|++++.+++  .  |+.+++|++..+..+..+..|...+..++++|++. 
T Consensus       134 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  211 (466)
T COG2319         134 -GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG-  211 (466)
T ss_pred             -ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc-
Confidence             8999999987 66666666 999999999999997665  2  78999999998888888888899999999998887 


Q ss_pred             EEEEeecCCCCcEEEEEccCCcee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce-EEEEEeCCCcCc
Q 014007          229 LVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAE  305 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~-~~~~~~~~~~~~  305 (432)
                      .+++ +++.|+.|++||...+...  .+..|.... ...|+|++.++++++.|+. +++||++.... +..+.  .|...
T Consensus       212 ~~~~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~--~~~~~  286 (466)
T COG2319         212 LLIA-SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLS--GHSSS  286 (466)
T ss_pred             eEEE-EecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEe--cCCcc
Confidence            2333 3458999999988864443  467787775 4489999999999999999 99999987765 44442  36789


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI  385 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  385 (432)
                      +.++.|+|++..+++++.|+.+++||..+......                                . ....|.+.+..
T Consensus       287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--------------------------------~-~~~~~~~~~~~  333 (466)
T COG2319         287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS--------------------------------L-TLKGHEGPVSS  333 (466)
T ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE--------------------------------e-eecccCCceEE
Confidence            99999999989888888889999998877652110                                0 02356667888


Q ss_pred             EEEccCCCEEEEE-ecCCeEEEEEecCCC
Q 014007          386 VAFGHQKNTVVIL-GMDGSFYRCQFDPVN  413 (432)
Q Consensus       386 ~~~s~~~~~l~~~-~~dg~v~iw~~~~~~  413 (432)
                      +.|.+++..++.+ ..|+.+++|++....
T Consensus       334 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            9994333566655 678999998886643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=1.6e-18  Score=150.06  Aligned_cols=242  Identities=15%  Similarity=0.156  Sum_probs=172.1

Q ss_pred             CcceeEEEEeeeCCe--EEEecCCCCCCCCCCeEEEEeCCCCc----eeEEee-cCCceEEEEEecCc--cEEE--eCCe
Q 014007          127 GGGIGVVEMLFRCNI--LALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDR--IIVV--LEQK  195 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~--~~~~s~~~d~~~~~~~v~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~--~~~~--~d~~  195 (432)
                      -+...|.+++|+|..  ..+++|+..     |.|-+||+.+.+    -+..+. |..+|.++.|+|..  +++.  .||+
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~-----G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKG-----GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCC-----CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            367789999998854  578888887     999999995322    233344 89999999999953  3333  4999


Q ss_pred             EEEEEcCCCee--eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc--eeeeeccCCceeEEEEcC-CC
Q 014007          196 IFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQ-DG  270 (432)
Q Consensus       196 i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~sp-~~  270 (432)
                      |++-|++.+..  +.........+..+.++.+...++++   ..=|.+.+||++.+.  ...+.-|...|.+|+++| ..
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~---~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p  335 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFG---DNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP  335 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEe---ecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence            99999987543  22332233344556677776655543   245699999999843  455678899999999999 55


Q ss_pred             CEEEEEcCCCceEEEEECCCCceEEE--EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec----CCCCCCCCCCC
Q 014007          271 QLLATSSTKGTLVRIFNTLDGTLLQE--VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK----VNSGSARSEPR  344 (432)
Q Consensus       271 ~~l~~~~~dg~~i~vwd~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~  344 (432)
                      .+|||++.|++ ++|||++.......  +..-.|...|.+..|||++-.|++.+.|..|+|||..    .......    
T Consensus       336 ~~laT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~----  410 (498)
T KOG4328|consen  336 WFLATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT----  410 (498)
T ss_pred             hheeecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce----
Confidence            78999999999 99999986433221  3333488899999999998889999999999999985    1111100    


Q ss_pred             CCCCCCCCCCCceeEeecccce-eecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          345 STSDPTLPTSSLSFIKGVLPKY-FSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                                        ++.- ....|         -.....+|.|+.+++++|..-..|-|++
T Consensus       411 ------------------I~Hn~~t~Rw---------lT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  411 ------------------IPHNNRTGRW---------LTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             ------------------eeccCccccc---------ccchhheeCCCccEEEEeccCcceeEEc
Confidence                              0000 00000         0234568999999999999988899865

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=7.5e-19  Score=154.88  Aligned_cols=258  Identities=14%  Similarity=0.170  Sum_probs=187.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEE-cCCCeeEEEeecccCcceeEE-EEee-------eCCeEEEecCCCCCC
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYN-CDPFREIFRRDFERGGGIGVV-EMLF-------RCNILALVGGGPDPQ  152 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~-~~~~~~~~~~~~~~~~~~~v~-~~~~-------~~~~~~~~s~~~d~~  152 (432)
                      ..|...|.|+.|+.+...+.+++|+.+.+|. +.+.... ...+.   ...+. .+..       ......++.++.|  
T Consensus        11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~~~~p---~df~pt~~h~~~rs~~~g~~~d~~~i~s~D--   84 (737)
T KOG1524|consen   11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-VAKLP---DDFVPTDMHLGGRSSGGGKGSDTLLICSND--   84 (737)
T ss_pred             cccceeEEeecccccceEEEeccCceEEEeecccchhhh-hhhCC---cccCCccccccccccCCCCCcceEEEEcCC--
Confidence            3577788899999999888888888855554 4322211 11111   11111 1111       1122345555556  


Q ss_pred             CCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       153 ~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                         |.+.+.+ +.++..+.+. |.+.+.+-.|++||.-+.+   ||.|++|. ++|-...++-....++.+++|.|+.+.
T Consensus        85 ---Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~  159 (737)
T KOG1524|consen   85 ---GRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNS  159 (737)
T ss_pred             ---ceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCc
Confidence               9999988 6777777777 9999999999999988774   99999999 566555555556678999999999988


Q ss_pred             EEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          229 LVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      +++ |.|   +.+.|-.+.. ..+....+|++-|.++.|++..+++++|++|-. .+|||. -|+.+..-.  .|+.+|+
T Consensus       160 vl~-c~g---~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~-~G~~Lf~S~--~~ey~IT  231 (737)
T KOG1524|consen  160 IVF-CQG---GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDA-QGANLFTSA--AEEYAIT  231 (737)
T ss_pred             eEE-ecC---CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecc-cCcccccCC--hhcccee
Confidence            754 333   6777766655 456678899999999999999999999999999 999994 566654443  4778999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  387 (432)
                      +++|.|+ +.++.++. +++++=..                                              ..|.|..++
T Consensus       232 Sva~npd-~~~~v~S~-nt~R~~~p----------------------------------------------~~GSifnls  263 (737)
T KOG1524|consen  232 SVAFNPE-KDYLLWSY-NTARFSSP----------------------------------------------RVGSIFNLS  263 (737)
T ss_pred             eeeeccc-cceeeeee-eeeeecCC----------------------------------------------CccceEEEE
Confidence            9999999 66666653 34442111                                              124588999


Q ss_pred             EccCCCEEEEEecCCeEEE
Q 014007          388 FGHQKNTVVILGMDGSFYR  406 (432)
Q Consensus       388 ~s~~~~~l~~~~~dg~v~i  406 (432)
                      ||+||..++.|+..|.+.+
T Consensus       264 WS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  264 WSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             EcCCCceeeccccCceEEE
Confidence            9999999999999998765

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.81  E-value=1.9e-18  Score=155.33  Aligned_cols=246  Identities=14%  Similarity=0.136  Sum_probs=170.5

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN  156 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~  156 (432)
                      .....|.+.|..+.|-|-...|++++ |.++++||++..+..-...+. +|...+.+++|.+. -..|++|+.|     |
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRD-----g  167 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRD-----G  167 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec-ccccccchhhhccCCCcceeeccCC-----C
Confidence            45567999999999999545666666 667999999988877554454 89999999999875 5678899999     9


Q ss_pred             eEEEEeCCCCc--------------------eeE-------Eee-cCCceEE---EEEecCccEEEe----CCeEEEEEc
Q 014007          157 KVMIWDDHQSR--------------------CIG-------ELS-FRSEVRS---VKLRRDRIIVVL----EQKIFVYNF  201 (432)
Q Consensus       157 ~v~iwd~~~~~--------------------~~~-------~~~-~~~~v~~---~~~~~~~~~~~~----d~~i~i~d~  201 (432)
                      .|.|||+.-..                    ..+       .-. +...|.+   +.+..|...|++    |+.|++||+
T Consensus       168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL  247 (720)
T KOG0321|consen  168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL  247 (720)
T ss_pred             cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence            99999975321                    000       001 2333444   445566666662    899999999


Q ss_pred             CCCeeeEE--------Eeec---cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce---eeeeccCC---ceeEE
Q 014007          202 ADLKLLHQ--------IETI---ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFIMAHDS---RIACF  264 (432)
Q Consensus       202 ~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~---~i~~~  264 (432)
                      ++......        +..+   ...+..+.....|.+++..|   .|+.|++|++.+..+   ..+.++..   .+.+ 
T Consensus       248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-  323 (720)
T KOG0321|consen  248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-  323 (720)
T ss_pred             cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEeccccCcCchhhccCcccceeeeee-
Confidence            97543221        1111   11233455555567665444   699999999988333   33333322   1222 


Q ss_pred             EEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCC
Q 014007          265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       265 ~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      ..+|++.+|++|+.|.. .++|.+.+.+.--.+..+ |...|++++|.|.. .-++++++|.+++||++..+-
T Consensus       324 ~lSpd~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~G-ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  324 ELSPDDCSLLSGSSDEQ-AYIWVVSSPEAPPALLLG-HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             ecCCCCceEeccCCCcc-eeeeeecCccCChhhhhC-cceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence            36899999999999999 999999887654444433 67889999998742 346677999999999996654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.80  E-value=3.2e-17  Score=134.08  Aligned_cols=278  Identities=14%  Similarity=0.201  Sum_probs=197.4

Q ss_pred             CCCeEEEEEcC--CC-CEEEEEc-----CCcEEEEEcC--CCeeEEEeecccCcceeEEEEeeeCCeE-----EEecCCC
Q 014007           85 PPTLLHISFNQ--DH-GCFAAGT-----DHGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNIL-----ALVGGGP  149 (432)
Q Consensus        85 ~~~v~~~~~s~--~~-~~l~~~~-----~~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~s~~~  149 (432)
                      .-.++++.|+.  +. .+||.|+     .+.|.|..++  +++......+.  |...++.+.|.|+..     .+++++ 
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd--~~YP~tK~~wiPd~~g~~pdlLATs~-  120 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFD--HPYPVTKLMWIPDSKGVYPDLLATSS-  120 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCC--CCCCccceEecCCccccCcchhhccc-
Confidence            45688899983  33 3788887     3447776654  44545445554  889999999988763     566666 


Q ss_pred             CCCCCCCeEEEEeCCCC--ce--eEE------eecCCceEEEEEec-CccEEEe---CCeEEEEEcCCCe---eeEEEee
Q 014007          150 DPQYPLNKVMIWDDHQS--RC--IGE------LSFRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLK---LLHQIET  212 (432)
Q Consensus       150 d~~~~~~~v~iwd~~~~--~~--~~~------~~~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~---~~~~~~~  212 (432)
                            ..+++|.+...  +.  ...      -.+..++++..|+. +-+++.+   |-+..|||++++.   ....+-.
T Consensus       121 ------D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA  194 (364)
T KOG0290|consen  121 ------DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA  194 (364)
T ss_pred             ------CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence                  57999998742  11  111      12677899999987 4555552   8999999999863   3556778


Q ss_pred             ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee----ccCCceeEEEEcC-CCCEEEEEcCCCceEEEEE
Q 014007          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM----AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~----~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd  287 (432)
                      |...|..++|...+..++ ++.| .||.|++||++.....++.    ....+...++|++ |-+++|+-..|...|.|.|
T Consensus       195 HDKEV~DIaf~~~s~~~F-ASvg-aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  195 HDKEVYDIAFLKGSRDVF-ASVG-ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             cCcceeEEEeccCccceE-EEec-CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            999999999999776654 5445 7999999999985544331    2245788899987 5678898888776699999


Q ss_pred             CCCC-ceEEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007          288 TLDG-TLLQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK  365 (432)
Q Consensus       288 ~~~~-~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (432)
                      ++.. ..+.++++  |.+.|+.++|.|. ...|+++++|..+.|||+...-.....           +          | 
T Consensus       273 iR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~-----------d----------P-  328 (364)
T KOG0290|consen  273 IRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE-----------D----------P-  328 (364)
T ss_pred             ecCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccccCCC-----------C----------c-
Confidence            9864 56777775  7799999999995 468999999999999999875421100           0          0 


Q ss_pred             eeecceeeEEEEecCCCceEEEEcc-CCCEEEEEecCCeEEE
Q 014007          366 YFSSEWSVAQFRLVEGSPYIVAFGH-QKNTVVILGMDGSFYR  406 (432)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~i  406 (432)
                             +.... .++.|+.+.|++ .+.+++.+. +.++.|
T Consensus       329 -------ilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  329 -------ILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             -------hhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence                   11111 345699999997 667887665 334444

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=1.2e-17  Score=142.48  Aligned_cols=249  Identities=16%  Similarity=0.174  Sum_probs=179.3

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcC--------C------CeeEEEeecccCcceeEEEEeeeCCeE
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCD--------P------FREIFRRDFERGGGIGVVEMLFRCNIL  142 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~--------~------~~~~~~~~~~~~~~~~v~~~~~~~~~~  142 (432)
                      ...+..|...|+++.|+|+|.+||+|+|++ |.+|...        +      ......+.+. +|...+..++|++++.
T Consensus        58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~  136 (434)
T KOG1009|consen   58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSN  136 (434)
T ss_pred             eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCc
Confidence            367888999999999999999999999888 9999865        2      1123334454 7899999999999999


Q ss_pred             EEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEe-------
Q 014007          143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIE-------  211 (432)
Q Consensus       143 ~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~-------  211 (432)
                      ++++++-|     ..+++||+..|+.+..+. |...+..++|.|-++++++   |...+.+.+...+.++...       
T Consensus       137 ~l~s~s~d-----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~  211 (434)
T KOG1009|consen  137 FLVSGSVD-----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK  211 (434)
T ss_pred             eeeeeecc-----ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence            99999999     999999999999999988 9999999999999998883   5555566554332222111       


Q ss_pred             --------------e--ccCCcceEEEecCCCcEEEEeecC--CCCc-----EEEEEccC--CceeeeeccCCceeEEEE
Q 014007          212 --------------T--IANPKGLCAVSQGVGSLVLVCPGL--QKGQ-----VRVEHYAS--KRTKFIMAHDSRIACFAL  266 (432)
Q Consensus       212 --------------~--~~~~~~~~~~~~~~~~~~~~~~g~--~d~~-----i~i~d~~~--~~~~~~~~~~~~i~~~~~  266 (432)
                                    .  .......++|+|+|..++.- +|.  ..+.     .++|+-..  .+...+.....+...+.|
T Consensus       212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP-ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~  290 (434)
T KOG1009|consen  212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP-AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRF  290 (434)
T ss_pred             ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc-cceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEe
Confidence                          0  01123457888888644321 111  1122     23333221  223334444445555555


Q ss_pred             cC------------------CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEE
Q 014007          267 TQ------------------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH  328 (432)
Q Consensus       267 sp------------------~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  328 (432)
                      +|                  .+..+|.++.+.  |+|||..+..++.....- |-..|+.++|++||..|+..+.||...
T Consensus       291 ~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s--vyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS  367 (434)
T KOG1009|consen  291 SPVYYELRPLSSEKFLFVLPYRLVFAIATKNS--VYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCS  367 (434)
T ss_pred             eeeEEEeccccccccccccccceEEEEeecce--EEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceE
Confidence            44                  334567777775  899999998888777654 668999999999999999999999988


Q ss_pred             EEEecCCC
Q 014007          329 VFNLKVNS  336 (432)
Q Consensus       329 iwd~~~~~  336 (432)
                      +--++..+
T Consensus       368 ~vtfe~~e  375 (434)
T KOG1009|consen  368 LVTFEPWE  375 (434)
T ss_pred             EEEEcchh
Confidence            88777665

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=1e-16  Score=150.07  Aligned_cols=219  Identities=13%  Similarity=0.058  Sum_probs=151.9

Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      ..|++||..... .+.+. +...+...+|+|||..++.      +..|++||+.+++... +..........+|+|||+.
T Consensus       184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCE
Confidence            689999976544 44444 7788999999999998873      2369999998875422 2222233446899999998


Q ss_pred             EEEEeecCCCCcEEE--EEccCCceeeeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCC-ceEEEEEeCCCcC
Q 014007          229 LVLVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDG-TLLQEVRRGADRA  304 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i--~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~-~~~~~~~~~~~~~  304 (432)
                      ++++.  ..+|.+.|  ||+.++....+..+...+....|+|||+.|+..+ .++. ..||++... .....+ .  +..
T Consensus       262 La~~~--~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~--~~~  335 (429)
T PRK01742        262 LAFAS--SKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-G--GRG  335 (429)
T ss_pred             EEEEE--ecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-c--CCC
Confidence            76653  34665555  5666677777777777888999999999877655 5677 788876432 222233 2  222


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  384 (432)
                        ....|+|||++|+.++.++ +.+||+.+++..                                    .+..+ ....
T Consensus       336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~------------------------------------~lt~~-~~~~  375 (429)
T PRK01742        336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTE------------------------------------VLSST-FLDE  375 (429)
T ss_pred             --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE------------------------------------EecCC-CCCC
Confidence              4578999999998887765 666999877521                                    01101 1134


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007          385 IVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY  422 (432)
Q Consensus       385 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~  422 (432)
                      .+.|+|||++|+.++.+|.+.+|.+....|+...++..
T Consensus       376 ~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~  413 (429)
T PRK01742        376 SPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG  413 (429)
T ss_pred             CceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence            57899999999999999999988875555665555543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=5.8e-18  Score=138.27  Aligned_cols=247  Identities=14%  Similarity=0.128  Sum_probs=182.8

Q ss_pred             CcccCCCCCCCeEEEEEcCCC-CEEEEEcC----C----cEEEEEcCCCeeE-------EEeecccCcceeEEEEeeeCC
Q 014007           77 AESTSSSPPPTLLHISFNQDH-GCFAAGTD----H----GFRIYNCDPFREI-------FRRDFERGGGIGVVEMLFRCN  140 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~----~----~i~iw~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~  140 (432)
                      ...+...|.+.|..++-+|-. ++|+++..    .    ++.||.+......       ....+...+-..+.++.|.|+
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            346677789999999999954 56776642    2    2789998532211       112222234458899999999


Q ss_pred             eEEEecCCCCCCCCCCeEEEEeCCCCce-eEEee------cCCceEEEEEec--CccEEEe--CCeEEEEEcCCCeeeEE
Q 014007          141 ILALVGGGPDPQYPLNKVMIWDDHQSRC-IGELS------FRSEVRSVKLRR--DRIIVVL--EQKIFVYNFADLKLLHQ  209 (432)
Q Consensus       141 ~~~~~s~~~d~~~~~~~v~iwd~~~~~~-~~~~~------~~~~v~~~~~~~--~~~~~~~--d~~i~i~d~~~~~~~~~  209 (432)
                      +..+++-.+      ..|.+|++..+.. +..+.      +....++-+|+|  ++..+++  |+++..||+++.+....
T Consensus       135 s~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~s  208 (370)
T KOG1007|consen  135 SDKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNS  208 (370)
T ss_pred             CCeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcc
Confidence            998888774      7999999988765 44433      355677888998  6777773  89999999999877666


Q ss_pred             E-eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEE
Q 014007          210 I-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRI  285 (432)
Q Consensus       210 ~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~v  285 (432)
                      + ..|...+..+.|.|+....+ +++| .||.|++||.+.  ..+..+.+|..+|.++.|+| ..+++++|+.|.. |.+
T Consensus       209 I~dAHgq~vrdlDfNpnkq~~l-vt~g-DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~L  285 (370)
T KOG1007|consen  209 IEDAHGQRVRDLDFNPNKQHIL-VTCG-DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNL  285 (370)
T ss_pred             hhhhhcceeeeccCCCCceEEE-EEcC-CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEE
Confidence            6 45777788899999977654 4434 899999999998  56778899999999999999 4567889999999 999


Q ss_pred             EECCCC-----------------------------ceEEEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecC
Q 014007          286 FNTLDG-----------------------------TLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       286 wd~~~~-----------------------------~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~  334 (432)
                      |....-                             ..+.++..  |+..|++++||.-.. .||+-+.||++.|=.+..
T Consensus       286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             EeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            865321                             12234443  678999999987655 567788999998876654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.79  E-value=6e-18  Score=152.98  Aligned_cols=245  Identities=16%  Similarity=0.205  Sum_probs=186.8

Q ss_pred             CCCCCCCcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCC
Q 014007           71 MPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP  149 (432)
Q Consensus        71 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~  149 (432)
                      ++......+.+.+|.+.|+|++|+.||+.+|+|+ |+.|.+|+-.-. ..  ..+  .|+..|.+|.|+|-...+++++-
T Consensus        39 D~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~--LkY--SH~D~IQCMsFNP~~h~LasCsL  113 (1081)
T KOG1538|consen   39 DTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GI--LKY--SHNDAIQCMSFNPITHQLASCSL  113 (1081)
T ss_pred             eCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ce--eee--ccCCeeeEeecCchHHHhhhcch
Confidence            4444556688999999999999999999999998 555999974321 11  233  49999999999999999999886


Q ss_pred             CCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEe---eccCCcceEEEe
Q 014007          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIE---TIANPKGLCAVS  223 (432)
Q Consensus       150 d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~  223 (432)
                            ...-+|.... +.+...+....+.+.+|..||++++.   +|+|.+-+- +++..-.++   +...++..++|+
T Consensus       114 ------sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~  185 (1081)
T KOG1538|consen  114 ------SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWN  185 (1081)
T ss_pred             ------hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEec
Confidence                  5788998544 33444445678889999999999993   999999874 444433443   356788899999


Q ss_pred             cCCC---cEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC
Q 014007          224 QGVG---SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (432)
Q Consensus       224 ~~~~---~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~  300 (432)
                      |...   .-+++.. ....++.+|.+.+..+..-..-.-...|+.+.++|.+++.|+.|+. +++|- +.|-.+.++.. 
T Consensus       186 p~sg~G~~di~aV~-DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg~-  261 (1081)
T KOG1538|consen  186 PSSGEGRNDILAVA-DWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVGE-  261 (1081)
T ss_pred             CCCCCCccceEEEE-eccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeeccc-
Confidence            8743   1122221 2556666776666554444444556789999999999999999999 99995 78877777764 


Q ss_pred             CCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                       ....|+.++..|++++++.|+.||+|..|++-
T Consensus       262 -~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  262 -QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             -cceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence             45799999999999999999999999999864

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=7.2e-19  Score=162.57  Aligned_cols=290  Identities=11%  Similarity=0.183  Sum_probs=209.1

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      .-+.+|-++|+|+.|...|.++++|+|+. ++||..++..+.  ..+. ||...+.+++.+.+...+++++.|     ..
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--As~r-Ghs~ditdlavs~~n~~iaaaS~D-----~v  255 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--ASCR-GHSGDITDLAVSSNNTMIAAASND-----KV  255 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--ccCC-CCccccchhccchhhhhhhhcccC-----ce
Confidence            45778999999999999999999999777 999998877766  6676 899999999999999999999999     99


Q ss_pred             EEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEE----ee-ccCCcceEEEecCCCcEE
Q 014007          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQI----ET-IANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~  230 (432)
                      |++|-+.++.++..+. |.+.|++++|+|-.  .. .||++++||.+ ...+...    +. ....+-.+.+...+... 
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f-  331 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRF-  331 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccccc-
Confidence            9999999999999998 99999999999965  11 38999999987 1111111    00 11222233333333322 


Q ss_pred             EEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~  309 (432)
                       . +|+.|+.-..|.+...     ..+...+.-+.++.+- .+.+++-.+-. +++|++.+|.+++.+.+  |...+..+
T Consensus       332 -~-Tgs~d~ea~n~e~~~l-----~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvL  401 (1113)
T KOG0644|consen  332 -L-TGSRDGEARNHEFEQL-----AWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVL  401 (1113)
T ss_pred             -c-cccCCcccccchhhHh-----hhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeee
Confidence             2 3456676666654331     1122222222222222 45566666767 99999999999988886  55788999


Q ss_pred             EECCCCCEE-EEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEE
Q 014007          310 AFSSNAQWL-AVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF  388 (432)
Q Consensus       310 ~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  388 (432)
                      .++|-...+ .+++.||...|||+-.+..++..                                  ..+| +.+...+|
T Consensus       402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y----------------------------------~~gh-~kl~d~kF  446 (1113)
T KOG0644|consen  402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY----------------------------------FIGH-GKLVDGKF  446 (1113)
T ss_pred             eecCCCcHhhhhccCCCceEeeecccCCcceee----------------------------------eccc-ceeecccc
Confidence            999965544 47889999999999988754321                                  1233 34667899


Q ss_pred             ccCCCEEEEEecCCeEEEEEecCCCCCcceEeeecccCC
Q 014007          389 GHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLK  427 (432)
Q Consensus       389 s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  427 (432)
                      |+||..++....-|.++|..  ...++-....+..+|+-
T Consensus       447 Sqdgts~~lsd~hgql~i~g--~gqs~s~k~ak~dqffl  483 (1113)
T KOG0644|consen  447 SQDGTSIALSDDHGQLYILG--TGQSKSQKKAKYDQFFL  483 (1113)
T ss_pred             CCCCceEecCCCCCceEEec--cCCCccccccccceEee
Confidence            99999999999999999954  45555555566665553

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.3e-16  Score=147.35  Aligned_cols=295  Identities=14%  Similarity=0.196  Sum_probs=203.9

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      .....|...++|.++||+++++|+|..+| |.+|.--.  ........+ .-|...|.++.|+.+|.++.+|+..     
T Consensus       199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l-HWH~~~V~~L~fS~~G~~LlSGG~E-----  272 (792)
T KOG1963|consen  199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL-HWHHDEVNSLSFSSDGAYLLSGGRE-----  272 (792)
T ss_pred             hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE-EecccccceeEEecCCceEeecccc-----
Confidence            34445777799999999999999998555 99997422  111111233 3588899999999999999999999     


Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeec-----------cCCcceE
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI-----------ANPKGLC  220 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-----------~~~~~~~  220 (432)
                      +.+.+|.+.+++ .+-+. ..++|..+.++||+.+.+   .|+.|.+....+......+.+.           .+-.+.+
T Consensus       273 ~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~  351 (792)
T KOG1963|consen  273 GVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV  351 (792)
T ss_pred             eEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence            999999999988 33333 789999999999998776   3999999988765544444332           2234567


Q ss_pred             EEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeee-----------ccCCceeEEEEcCCCCEEEEEcC--------CC
Q 014007          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM-----------AHDSRIACFALTQDGQLLATSST--------KG  280 (432)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~-----------~~~~~i~~~~~sp~~~~l~~~~~--------dg  280 (432)
                      +++|..+.+++  .| ..|.|.+||+-+.. +..+.           .+.-.++.++.+-.|.+++|.-.        ||
T Consensus       352 ~idpr~~~~vl--n~-~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~  428 (792)
T KOG1963|consen  352 SIDPRTNSLVL--NG-HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG  428 (792)
T ss_pred             EEcCCCCceee--cC-CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence            88885554433  33 78999999987732 22221           12335778888888999988642        32


Q ss_pred             c-eEEEEECCCC----ceEEEEEeCCCcCceEEEEE-CCCCC-EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007          281 T-LVRIFNTLDG----TLLQEVRRGADRAEIYSLAF-SSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT  353 (432)
Q Consensus       281 ~-~i~vwd~~~~----~~~~~~~~~~~~~~i~~~~~-s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (432)
                      . .+++|-....    .+...+... |...+...++ ++... ..++++.||.++||-+...+.+...            
T Consensus       429 e~~LKFW~~n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~------------  495 (792)
T KOG1963|consen  429 EVSLKFWQYNPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK------------  495 (792)
T ss_pred             eEEEEEEEEcCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcC------------
Confidence            2 2788965433    233334433 5554444444 44333 7889999999999999776643221            


Q ss_pred             CCceeEeecccceeecceeeE-EEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          354 SSLSFIKGVLPKYFSSEWSVA-QFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                    ...|... .-..|..++.+++|+.||..| +.+.|+.|.||+.+.
T Consensus       496 --------------~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  496 --------------SSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDT  539 (792)
T ss_pred             --------------ccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCC
Confidence                          2234322 222477789999999999655 567788999999876

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=3.6e-17  Score=133.84  Aligned_cols=237  Identities=11%  Similarity=0.128  Sum_probs=166.2

Q ss_pred             CCCCCCeEEEEEcCCCC----EEEEEcCCcEEEEEcCCCee--EEEeecc----cCcceeEEEEeeeC-CeEEEecCCCC
Q 014007           82 SSPPPTLLHISFNQDHG----CFAAGTDHGFRIYNCDPFRE--IFRRDFE----RGGGIGVVEMLFRC-NILALVGGGPD  150 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~----~l~~~~~~~i~iw~~~~~~~--~~~~~~~----~~~~~~v~~~~~~~-~~~~~~s~~~d  150 (432)
                      ..|.-+++.+.|.|+..    -|.+.+++.+|+|.+...+.  .....+.    ..+...++++.|+. +-.++.+++-|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD  172 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID  172 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence            56889999999999874    24444566799999864222  1111121    23556788888865 55678888888


Q ss_pred             CCCCCCeEEEEeCCCCce---eEEe-ecCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEEEeecc---CCcce
Q 014007          151 PQYPLNKVMIWDDHQSRC---IGEL-SFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIA---NPKGL  219 (432)
Q Consensus       151 ~~~~~~~v~iwd~~~~~~---~~~~-~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~---~~~~~  219 (432)
                           .+..|||++++..   ...+ .|...|..++|...+.-++    .||.|++||++..+.-..+....   .+...
T Consensus       173 -----TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR  247 (364)
T KOG0290|consen  173 -----TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR  247 (364)
T ss_pred             -----CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee
Confidence                 9999999998732   2333 3999999999999776554    39999999999865444433322   23344


Q ss_pred             EEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCc----
Q 014007          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT----  292 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~----  292 (432)
                      ++|++...++ +++-......|.|.|++.  ..+..+.+|.+.|+.++|.| ....|++++.|.. +-+||+...-    
T Consensus       248 LswnkqDpny-mATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~~  325 (364)
T KOG0290|consen  248 LSWNKQDPNY-MATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPRENG  325 (364)
T ss_pred             eccCcCCchH-HhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccCC
Confidence            5565544333 343344568899999998  55678899999999999999 4578999999998 9999997532    


Q ss_pred             --eEEEEEeCCCcCceEEEEECC-CCCEEEEEeCCCeEEE
Q 014007          293 --LLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHV  329 (432)
Q Consensus       293 --~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i  329 (432)
                        ++..+.   ..+.|..+.|++ .+.+|+.+. ++++.|
T Consensus       326 ~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  326 EDPILAYT---AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             CCchhhhh---ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence              222333   336899999996 566787775 444544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.78  E-value=5.8e-17  Score=134.89  Aligned_cols=273  Identities=11%  Similarity=0.088  Sum_probs=189.1

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE
Q 014007           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (432)
Q Consensus        91 ~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~  170 (432)
                      .+|||+|+++|+..+-.+.|-|.++.+..  +.+.  --..|..+.|..+..+++++..    .++.|.+|++...+--.
T Consensus        14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~--qlf~--cldki~yieW~ads~~ilC~~y----k~~~vqvwsl~Qpew~c   85 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRYRLVIRDSETLQLH--QLFL--CLDKIVYIEWKADSCHILCVAY----KDPKVQVWSLVQPEWYC   85 (447)
T ss_pred             eeECCCCCeeeeeeeeEEEEeccchhhHH--HHHH--HHHHhhheeeeccceeeeeeee----ccceEEEEEeecceeEE
Confidence            58999999999999888888887776544  2222  3456777888888877766542    23899999999888777


Q ss_pred             Eee-cCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec----------
Q 014007          171 ELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG----------  235 (432)
Q Consensus       171 ~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------  235 (432)
                      .+. ...++.+++|+|||+.+.    .+-.|.+|.+.+.+... ++-.+..+..++|+++|+...+++--          
T Consensus        86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            777 788999999999997776    27899999998866543 33334456789999999877665411          


Q ss_pred             -----------------------CCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc
Q 014007          236 -----------------------LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (432)
Q Consensus       236 -----------------------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~  292 (432)
                                             -.+..+.+||.--.-........-.+..+.|+|.+++|++|+.|+. +||.+--+.+
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvlnh~tWk  243 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLNHFTWK  243 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchh-hhhhceeeee
Confidence                                   0113344444322111111223356889999999999999999998 8875431110


Q ss_pred             ------------------------------------------------------------eEEEEEeC----CCcCceEE
Q 014007          293 ------------------------------------------------------------LLQEVRRG----ADRAEIYS  308 (432)
Q Consensus       293 ------------------------------------------------------------~~~~~~~~----~~~~~i~~  308 (432)
                                                                                  .+..++..    .....+..
T Consensus       244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~  323 (447)
T KOG4497|consen  244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK  323 (447)
T ss_pred             ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence                                                                        11111100    01235777


Q ss_pred             EEECCCCCEEEEEe--CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE
Q 014007          309 LAFSSNAQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV  386 (432)
Q Consensus       309 ~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  386 (432)
                      ++|++|..++++-.  .-+.+.+||++..+.                                    +.+-....+|...
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l------------------------------------~avLiQk~piraf  367 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKL------------------------------------HAVLIQKHPIRAF  367 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhh------------------------------------hhhhhhccceeEE
Confidence            99999999998875  346799999998762                                    1122233468999


Q ss_pred             EEccCCCEEEEEecCCeEEEEEe
Q 014007          387 AFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       387 ~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      .|.|....|+.+.....+|+|..
T Consensus       368 ~WdP~~prL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  368 EWDPGRPRLVVCTGKSRLYFWAP  390 (447)
T ss_pred             EeCCCCceEEEEcCCceEEEEcC
Confidence            99999889998888888888875

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=2.5e-15  Score=140.37  Aligned_cols=213  Identities=13%  Similarity=0.052  Sum_probs=146.9

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (432)
                      ..|.+||...........+...+...+|+|||+.++.      +..|++|++.+++... +...........|+|||+.+
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEE
Confidence            5799999765554443447778999999999988873      3479999998875432 22233445578999999988


Q ss_pred             EEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC-Cc-eEEEEECCCCceEEEEEeCCCcCceE
Q 014007          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-GT-LVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g~-~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      +++.....+..|++||+.++....+..+...+....|+|||+.|+..+.+ +. .|+++|+.+++.. .+..  ......
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~~~  334 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQ  334 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCCcc
Confidence            77643222346889999988777777666678899999999988777654 33 1556677666543 3332  223456


Q ss_pred             EEEECCCCCEEEEEeCC---CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007          308 SLAFSSNAQWLAVSSDK---GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  384 (432)
                      ...|+|||++|+..+.+   ..|++||+.+++.                                    ..+.. .....
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~------------------------------------~~Lt~-~~~~~  377 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV------------------------------------QVLTD-TFLDE  377 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCCe------------------------------------EEeCC-CCCCC
Confidence            78999999999876543   3588889877651                                    11111 11234


Q ss_pred             EEEEccCCCEEEEEecCCe---EEEEEe
Q 014007          385 IVAFGHQKNTVVILGMDGS---FYRCQF  409 (432)
Q Consensus       385 ~~~~s~~~~~l~~~~~dg~---v~iw~~  409 (432)
                      ...|+|||++|+.++.++.   ++++++
T Consensus       378 ~p~~SpDG~~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        378 TPSIAPNGTMVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             CceECCCCCEEEEEEcCCCceEEEEEEC
Confidence            5789999999999998875   444444

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.78  E-value=2.2e-17  Score=137.33  Aligned_cols=239  Identities=15%  Similarity=0.192  Sum_probs=172.9

Q ss_pred             CCCCCCeEEEEEcCCC----CEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe-EEEecCCCCCCCCC
Q 014007           82 SSPPPTLLHISFNQDH----GCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPL  155 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~----~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~  155 (432)
                      ..|....+.++|+-|-    .+||+|+..| |+|.|+...+..  ..+. +|+..|..+.+.|.. +++++++.|     
T Consensus        86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~--~~~~-ghG~sINeik~~p~~~qlvls~SkD-----  157 (385)
T KOG1034|consen   86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS--KNYR-GHGGSINEIKFHPDRPQLVLSASKD-----  157 (385)
T ss_pred             CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc--ccee-ccCccchhhhcCCCCCcEEEEecCC-----
Confidence            3577888888997542    3788887666 999998877655  5565 899999999999875 678899999     


Q ss_pred             CeEEEEeCCCCceeEEee----cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeE--------------------
Q 014007          156 NKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLH--------------------  208 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~--------------------  208 (432)
                      ..|++|+++++.++..+.    |...|.++.|+.+|.++++   |..|++|++...+...                    
T Consensus       158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~  237 (385)
T KOG1034|consen  158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP  237 (385)
T ss_pred             ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence            999999999999999986    8999999999999999995   8899999998422111                    


Q ss_pred             --------EEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--Cc-------------eeeeeccCCceeEE-
Q 014007          209 --------QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KR-------------TKFIMAHDSRIACF-  264 (432)
Q Consensus       209 --------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~-------------~~~~~~~~~~i~~~-  264 (432)
                              +-..|.+.|.++.|--  +  ++.+ -+-++.|..|....  ..             ...+.-....|.-+ 
T Consensus       238 ~~~fp~fst~diHrnyVDCvrw~g--d--~ilS-kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfir  312 (385)
T KOG1034|consen  238 KTHFPDFSTTDIHRNYVDCVRWFG--D--FILS-KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIR  312 (385)
T ss_pred             ccccccccccccccchHHHHHHHh--h--heee-cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEE
Confidence                    0112333333333332  2  2232 23567899997622  11             11222223344444 


Q ss_pred             -EEcCCCCEEEEEcCCCceEEEEECCCCceE--EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          265 -ALTQDGQLLATSSTKGTLVRIFNTLDGTLL--QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       265 -~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                       +|.|-++.||.|...|. |++||++.....  .++........|...+|+.||..|+..++|++|.-||..+
T Consensus       313 f~~d~~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  313 FAFDPWQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             EeecHHHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence             55677899999999999 999999877653  2233222336799999999999999999999999998643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=5.8e-17  Score=153.77  Aligned_cols=290  Identities=15%  Similarity=0.179  Sum_probs=192.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecc--cCcceeEEEEeeeC--CeEEEecCCCCCCCCCC
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRC--NILALVGGGPDPQYPLN  156 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~  156 (432)
                      .+....-..+.|+|-...++++.++. |++||.+.++..  ..|.  ......|..+.+-.  +...+.+++.|     |
T Consensus      1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l--~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d-----G 1133 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL--NGFDNGAFPDTRVSDLELINEQDDALLLTASSD-----G 1133 (1387)
T ss_pred             hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCcee--ccccCCCCCCCccceeeeecccchhheeeeccC-----c
Confidence            33344566789999999999998665 999999877654  3332  12345677776643  45567788888     9


Q ss_pred             eEEEEeCCCC-----ceeEEee--------cCCceEEEEEecC-ccEEEeC--CeEEEEEcCCCeeeEEEeecc-CCcce
Q 014007          157 KVMIWDDHQS-----RCIGELS--------FRSEVRSVKLRRD-RIIVVLE--QKIFVYNFADLKLLHQIETIA-NPKGL  219 (432)
Q Consensus       157 ~v~iwd~~~~-----~~~~~~~--------~~~~v~~~~~~~~-~~~~~~d--~~i~i~d~~~~~~~~~~~~~~-~~~~~  219 (432)
                      .|+||+-...     +.+.-..        ..+.-.-+.|... |.++++.  ..|+|||.......+.+.... ..++.
T Consensus      1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred             eEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcccee
Confidence            9999974321     2222221        0111123456554 4444443  379999998887777765432 23333


Q ss_pred             EEEecCCCcEEEEeecCCCCcEEEEEccCC----ceeeeeccCCc--eeEEEEcCCCCE-EEEEcCCCceEEEEECCCCc
Q 014007          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSR--IACFALTQDGQL-LATSSTKGTLVRIFNTLDGT  292 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~~~--i~~~~~sp~~~~-l~~~~~dg~~i~vwd~~~~~  292 (432)
                      +.-+.....+ ++ +|..||.|++||.+..    .+.....|+..  |..+.+.+.|-- |++|+.||. |++||++...
T Consensus      1214 LS~~~~~gn~-i~-AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1214 LSADLVHGNI-IA-AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSS 1290 (1387)
T ss_pred             ecccccCCce-EE-EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCc
Confidence            3333333233 33 4678999999999873    35567788887  999999887654 999999999 9999999853


Q ss_pred             eEEEEEeCCC---cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeec
Q 014007          293 LLQEVRRGAD---RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSS  369 (432)
Q Consensus       293 ~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (432)
                      ....+..-.|   .+..+++..+++...+|+|+. +.|+||++...+. ..+               .    ..+.+   
T Consensus      1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~---------------k----~n~~F--- 1346 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NII---------------K----YNPGF--- 1346 (1387)
T ss_pred             ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-ccc---------------c----cCccc---
Confidence            2222221111   125899999999999999998 9999999976541 111               0    00000   


Q ss_pred             ceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          370 EWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                            +....+.+.+++|+|..-+||+|..|.+|.||..+.
T Consensus      1347 ------~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1347 ------MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             ------ccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence                  111224579999999999999999999999998744

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=5.4e-16  Score=140.82  Aligned_cols=236  Identities=11%  Similarity=0.061  Sum_probs=158.8

Q ss_pred             CCeEEEEEcCCCCEEEEEc--CCcEEEEEcCC-CeeEEEeecccCcceeEEEEeeeCCeEEEecCCC-CCCCCCCeEEEE
Q 014007           86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKVMIW  161 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~v~iw  161 (432)
                      +....++++|++++|+++.  +++|.+|+++. +.........  .......+.+++++..+++++. +     +.|.+|
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~-----~~v~v~  107 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNA-----NCVSVS  107 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCC-----CeEEEE
Confidence            4566789999999987765  45599999863 3332223222  2234567889999877766543 4     899999


Q ss_pred             eCCCC-c---eeEEeecCCceEEEEEecCccEEEe----CCeEEEEEcCCCeeeE-----EEee-ccCCcceEEEecCCC
Q 014007          162 DDHQS-R---CIGELSFRSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLH-----QIET-IANPKGLCAVSQGVG  227 (432)
Q Consensus       162 d~~~~-~---~~~~~~~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~  227 (432)
                      ++.+. .   .+..+.+.....+++++|++++++.    ++.|.+||+.+...+.     .... .......+.|+|+++
T Consensus       108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~  187 (330)
T PRK11028        108 PLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ  187 (330)
T ss_pred             EECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC
Confidence            98643 2   2333334455778899999988762    6899999997633221     1111 123345789999999


Q ss_pred             cEEEEeecCCCCcEEEEEccC--Ccee---eeecc------CCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCCc---
Q 014007          228 SLVLVCPGLQKGQVRVEHYAS--KRTK---FIMAH------DSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGT---  292 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~--~~~~---~~~~~------~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~~---  292 (432)
                      .++++.  ..++.|.+|+++.  +...   .+..+      ......+.|+|+|++|+++.. ++. |.+|++....   
T Consensus       188 ~lyv~~--~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~~  264 (330)
T PRK11028        188 YAYCVN--ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSVL  264 (330)
T ss_pred             EEEEEe--cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCeE
Confidence            887764  3479999999973  2322   22211      122346889999999999865 566 9999986433   


Q ss_pred             -eEEEEEeCCCcCceEEEEECCCCCEEEEEeC-CCeEEEEEecC
Q 014007          293 -LLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKV  334 (432)
Q Consensus       293 -~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~  334 (432)
                       .+..+..+   .....+.|+|||++|+++.. +++|.+|+++.
T Consensus       265 ~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        265 SFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence             22222221   24568999999999998774 89999999864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=7e-16  Score=130.47  Aligned_cols=236  Identities=17%  Similarity=0.199  Sum_probs=166.6

Q ss_pred             ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEE-eecCCceEEEEEecCccEEEe---CCeEEEEEcCCC
Q 014007          129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL  204 (432)
Q Consensus       129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~  204 (432)
                      ...+..+.|+.+...+..|+.+      ..++|.......... ......|-.+-|+.+-..++.   ...+++++++.+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~------Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~   78 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKD------GYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK   78 (391)
T ss_pred             CcceeeeeeccceeEEEccCCC------ceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC
Confidence            3455566688888888888886      567777654332111 113344555566655444443   246899998887


Q ss_pred             eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeee---eccCCceeEEEEcCCCCEEEEE--cC
Q 014007          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFI---MAHDSRIACFALTQDGQLLATS--ST  278 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~---~~~~~~i~~~~~sp~~~~l~~~--~~  278 (432)
                      ..+..+. ....|-++.+..  ++++ ++   -...|+|||++..+ +.++   ..+...+.++.+++.+.+||.-  ..
T Consensus        79 ~~ICe~~-fpt~IL~VrmNr--~RLv-V~---Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t  151 (391)
T KOG2110|consen   79 TTICEIF-FPTSILAVRMNR--KRLV-VC---LEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT  151 (391)
T ss_pred             ceEEEEe-cCCceEEEEEcc--ceEE-EE---EcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence            7777664 334454555544  4544 33   34569999999844 3333   3466667777777777888863  23


Q ss_pred             CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe-EEEEEecCCCCCCCCCCCCCCCCCCCCCCce
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT-VHVFNLKVNSGSARSEPRSTSDPTLPTSSLS  357 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (432)
                      .|. |.|||+.+.+.+..+..  |++.+.+++|+++|.+||++++.|+ ||||.+.+++.+.++                
T Consensus       152 ~Gd-V~l~d~~nl~~v~~I~a--H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF----------------  212 (391)
T KOG2110|consen  152 SGD-VVLFDTINLQPVNTINA--HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF----------------  212 (391)
T ss_pred             Cce-EEEEEcccceeeeEEEe--cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee----------------
Confidence            566 99999999999999984  7899999999999999999999987 789999998743221                


Q ss_pred             eEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCC
Q 014007          358 FIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVN  413 (432)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~  413 (432)
                       -++..                --.|.+++|+||+++|++.+..++|+||+++...
T Consensus       213 -RRG~~----------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  213 -RRGTY----------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             -eCCce----------------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence             11111                1248899999999999999999999999997754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=4.9e-16  Score=145.79  Aligned_cols=216  Identities=13%  Similarity=0.057  Sum_probs=146.9

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (432)
                      ..|.+||...........+...+.+.+|+|||..++.      +..|++||+.+++... +...........|+|+|+.+
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence            4799999754444333347788999999999988773      2469999998876533 33334444578999999988


Q ss_pred             EEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC-CCc-eEEEEECCCCceEEEEEeCCCcCceE
Q 014007          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGT-LVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~-~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      +++.....+..|++||+.++....+..+.......+|+|||+.|+..+. ++. .|+++|+.+++......   +.....
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~---~g~~~~  339 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF---QGNYNA  339 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec---CCCCcc
Confidence            7665333345799999998887777777666678999999998887764 332 16777877776443222   123345


Q ss_pred             EEEECCCCCEEEEEeCCC---eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007          308 SLAFSSNAQWLAVSSDKG---TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  384 (432)
                      .++|+|||++|+..+.++   .|++||+.+++..                                    .+. +.....
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~------------------------------------~Lt-~~~~~~  382 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR------------------------------------TLT-PGSLDE  382 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE------------------------------------ECC-CCCCCC
Confidence            789999999998765433   6999999776521                                    111 111234


Q ss_pred             EEEEccCCCEEEEEecC-CeEEEEEecCC
Q 014007          385 IVAFGHQKNTVVILGMD-GSFYRCQFDPV  412 (432)
Q Consensus       385 ~~~~s~~~~~l~~~~~d-g~v~iw~~~~~  412 (432)
                      ...|+|||++|+..+.+ |.-.||.++..
T Consensus       383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        383 SPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEEECC
Confidence            57899999988877663 44445555553

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.4e-17  Score=141.62  Aligned_cols=197  Identities=22%  Similarity=0.285  Sum_probs=157.1

Q ss_pred             EEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEE
Q 014007          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQ  209 (432)
Q Consensus       133 ~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~  209 (432)
                      ..++|+.++..+++++.|     |++|+|++.+...+.... |...|.++.|+|||+++++  ....+||+.+++..+..
T Consensus       148 k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTD-----GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeecccc-----ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhh
Confidence            678899999999999999     999999988777666555 9999999999999999984  33999999999976665


Q ss_pred             Eeec--cCCcceEEEecCC--CcEEEEeecCCCCcEEEEEccC--C----ceeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007          210 IETI--ANPKGLCAVSQGV--GSLVLVCPGLQKGQVRVEHYAS--K----RTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (432)
Q Consensus       210 ~~~~--~~~~~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~--~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (432)
                      ....  ......|.|+.++  ..+++++.-..-+.|+.||+..  +    +..........|.+++.+++|++++.|+.|
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence            5422  2234457777665  3455554444567777777654  1    222333345679999999999999999999


Q ss_pred             CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      |. |-|++..+.++++.++. .|...|+.+.|+||.+++++.+.+....|..+.-..
T Consensus       303 Gs-Vai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~  357 (398)
T KOG0771|consen  303 GS-VAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK  357 (398)
T ss_pred             Cc-EEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence            99 99999999999887775 488899999999999999999999999999887633

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=3e-16  Score=133.68  Aligned_cols=214  Identities=15%  Similarity=0.231  Sum_probs=161.9

Q ss_pred             cCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCC
Q 014007          126 RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL  204 (432)
Q Consensus       126 ~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~  204 (432)
                      .+|...|.++.|+| +...+++|+.|     .+|.||.+..+.....+                               -
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD-----~~v~vW~IPe~~l~~~l-------------------------------t  121 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSED-----TKVMVWQIPENGLTRDL-------------------------------T  121 (472)
T ss_pred             cCccccccccccCccCCceeecCCCC-----ceEEEEECCCcccccCc-------------------------------c
Confidence            58999999999998 56788999999     99999998654322211                               1


Q ss_pred             eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEE
Q 014007          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~  284 (432)
                      +++..+.+|...+..++|+|-..++++.+ | .|..|.+|++.++.......|...|+++.|+-||.+|++.+.|.. ||
T Consensus       122 epvv~L~gH~rrVg~V~wHPtA~NVLlsa-g-~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKk-vR  198 (472)
T KOG0303|consen  122 EPVVELYGHQRRVGLVQWHPTAPNVLLSA-G-SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKK-VR  198 (472)
T ss_pred             cceEEEeecceeEEEEeecccchhhHhhc-c-CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccce-eE
Confidence            55667788999999999999988876543 4 699999999999765544459999999999999999999999999 99


Q ss_pred             EEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe---CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEee
Q 014007          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG  361 (432)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (432)
                      |||.++++.+.+-..| ....-..+-|-.+|..+.+|-   .+..+.+||..+.+..-.                     
T Consensus       199 v~dpr~~~~v~e~~~h-eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~---------------------  256 (472)
T KOG0303|consen  199 VIDPRRGTVVSEGVAH-EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIA---------------------  256 (472)
T ss_pred             EEcCCCCcEeeecccc-cCCCcceeEEeccCceeeeccccccccceeccCcccccCcce---------------------
Confidence            9999999999887553 223456677778888555543   578899999887653210                     


Q ss_pred             cccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe-cCCeEEEEEecCC
Q 014007          362 VLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG-MDGSFYRCQFDPV  412 (432)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~  412 (432)
                                 +..+...+ .|.---|.+|.+.|..+| .||.|+.|.+..+
T Consensus       257 -----------~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  257 -----------LQELDTSN-GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             -----------eEEeccCC-ceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence                       22233222 244445677888777555 4999999998664

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.76  E-value=1.7e-16  Score=147.72  Aligned_cols=259  Identities=14%  Similarity=0.105  Sum_probs=183.3

Q ss_pred             cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCce--eEE---e--ecCCce
Q 014007          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRC--IGE---L--SFRSEV  178 (432)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~--~~~---~--~~~~~v  178 (432)
                      .+.||++... ......+.  ....|.++.|++. ...+++|..+     |.|.+||+..+..  ...   .  .|..++
T Consensus       223 ~~~vW~~~~p-~~Pe~~~~--~~s~v~~~~f~p~~p~ll~gG~y~-----GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  223 VLLVWSLKNP-NTPELVLE--SPSEVTCLKFCPFDPNLLAGGCYN-----GQVVLWDLRKGSDTPPSGLSALEVSHSEPV  294 (555)
T ss_pred             eEEEEecCCC-CCceEEEe--cCCceeEEEeccCCcceEEeeccC-----ceEEEEEccCCCCCCCcccccccccCCcCe
Confidence            3889998655 23334453  6788999999885 5677778888     9999999987654  222   2  288999


Q ss_pred             EEEEEecCcc---EEE--eCCeEEEEEcCCCeee-E-----EEe------eccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007          179 RSVKLRRDRI---IVV--LEQKIFVYNFADLKLL-H-----QIE------TIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       179 ~~~~~~~~~~---~~~--~d~~i~i~d~~~~~~~-~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (432)
                      ..+.|..+-.   ++.  +||.|..|+++.-... .     ...      .....++.++|.+.....+++  |+++|.|
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV--GTe~G~v  372 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV--GTEEGKV  372 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE--EcCCcEE
Confidence            9999976432   332  4999999998753221 1     111      112345678888877766664  4688988


Q ss_pred             EEEEccC---Cc------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC-CCceEEEEEeCCCcCceEEEEE
Q 014007          242 RVEHYAS---KR------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAF  311 (432)
Q Consensus       242 ~i~d~~~---~~------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~~~  311 (432)
                      ..-+-..   ..      ...+..|.+.|+++.++|=+..++..+.|.+ |+||... ...++..+..  +...+++++|
T Consensus       373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaW  449 (555)
T KOG1587|consen  373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAW  449 (555)
T ss_pred             EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEE
Confidence            7733322   22      2345678999999999996655555555888 9999977 5666666664  4466999999


Q ss_pred             CCCCC-EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007          312 SSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (432)
Q Consensus       312 s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  390 (432)
                      ||... .|+++..||.|.+||+......+                                 +.+.+.+....+.+.|++
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl~~~~~P---------------------------------v~s~~~~~~~l~~~~~s~  496 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLLQDDEEP---------------------------------VLSQKVCSPALTRVRWSP  496 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhhccccCC---------------------------------cccccccccccceeecCC
Confidence            99764 67788889999999998765332                                 222333344567788999


Q ss_pred             CCCEEEEEecCCeEEEEEecC
Q 014007          391 QKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       391 ~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .|+.|++|...|.+++|++..
T Consensus       497 ~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  497 NGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CCcEEEEecCCCcEEEEEcCc
Confidence            999999999999999999954

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=2.5e-15  Score=141.24  Aligned_cols=214  Identities=10%  Similarity=0.063  Sum_probs=148.5

Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      ..|.++|..... .+.+. +...+...+|+|||+.++.      +..|++||+.+++.. .+......+....|+|+|+.
T Consensus       182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            589999975444 44444 7889999999999988773      358999999887653 34445556678899999998


Q ss_pred             EEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC-CC--ceEEEEECCCCceEEEEEeCCCcCc
Q 014007          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KG--TLVRIFNTLDGTLLQEVRRGADRAE  305 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg--~~i~vwd~~~~~~~~~~~~~~~~~~  305 (432)
                      +++.........|.+||+.++....+..+........|+|||+.|+..+. ++  . |+++|+..++... +..  +...
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~~-lt~--~~~~  335 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPRR-ISF--GGGR  335 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeEE-eec--CCCc
Confidence            87654332334588889988888777777777788999999998887664 22  5 8888987665543 332  2345


Q ss_pred             eEEEEECCCCCEEEEEeCC---CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCC
Q 014007          306 IYSLAFSSNAQWLAVSSDK---GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS  382 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (432)
                      +....|+|||++|+....+   ..|.+||+..+...                                    .+. ....
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~------------------------------------~lt-~~~~  378 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER------------------------------------ILT-SGFL  378 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE------------------------------------ecc-CCCC
Confidence            6778999999999877643   36788887544310                                    011 1123


Q ss_pred             ceEEEEccCCCEEEEEecC-Ce---EEEEEecCC
Q 014007          383 PYIVAFGHQKNTVVILGMD-GS---FYRCQFDPV  412 (432)
Q Consensus       383 v~~~~~s~~~~~l~~~~~d-g~---v~iw~~~~~  412 (432)
                      +..+.|+|||+.|+..+.+ +.   ..+|.++..
T Consensus       379 ~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        379 VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             CCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence            5678999999998876653 22   344445544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=1.5e-17  Score=144.28  Aligned_cols=228  Identities=16%  Similarity=0.168  Sum_probs=187.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      ...-+.+.|+.+|+.|+.|+..| |..+|..+.+..+.  +.  -...|.++.|-.+..+++.+..      ..++||| 
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E--i~--v~Etv~Dv~~LHneq~~AVAQK------~y~yvYD-  197 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE--IN--VMETVRDVTFLHNEQFFAVAQK------KYVYVYD-  197 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeee--ee--hhhhhhhhhhhcchHHHHhhhh------ceEEEec-
Confidence            45667899999999999999777 99999888776643  32  4567888888888888888876      6999999 


Q ss_pred             CCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCc
Q 014007          164 HQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (432)
Q Consensus       164 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (432)
                      ..|..+..++-...|..+.|-|...++++   .|.++--|+.+|+.+..+....+.+..++-+|-.   .++..|..+|+
T Consensus       198 ~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N---aVih~GhsnGt  274 (545)
T KOG1272|consen  198 NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN---AVIHLGHSNGT  274 (545)
T ss_pred             CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc---ceEEEcCCCce
Confidence            78888888887888999999999888874   6889999999999999988877877777777765   34445778999


Q ss_pred             EEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEE
Q 014007          241 VRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA  319 (432)
Q Consensus       241 i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  319 (432)
                      |.+|.... ..+..+..|.++|.+|++.++|+|++|.+.|.. |+|||++....+.++..   +.+...++||..| +| 
T Consensus       275 VSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lL-  348 (545)
T KOG1272|consen  275 VSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LL-  348 (545)
T ss_pred             EEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc-ce-
Confidence            99999887 445667889999999999999999999999999 99999999988877774   3467888998755 34 


Q ss_pred             EEeCCCeEEEEEe
Q 014007          320 VSSDKGTVHVFNL  332 (432)
Q Consensus       320 ~~~~dg~i~iwd~  332 (432)
                      +.+....|.||.=
T Consensus       349 A~~~G~~v~iw~d  361 (545)
T KOG1272|consen  349 ALSYGDHVQIWKD  361 (545)
T ss_pred             eeecCCeeeeehh
Confidence            4444557999953

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=6.3e-15  Score=138.77  Aligned_cols=239  Identities=21%  Similarity=0.332  Sum_probs=190.3

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-eeEEeec-C-CceEEEEE-ecCcc-EEEe----CCeEE
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELSF-R-SEVRSVKL-RRDRI-IVVL----EQKIF  197 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-~~~~~~~-~-~~v~~~~~-~~~~~-~~~~----d~~i~  197 (432)
                      .+...+..+.+.+.+..++.++.+     +.+.+|+...+. .+..+.. . ..+..+.+ .+++. ++..    |+.+.
T Consensus        63 ~~~~~i~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          63 GHEDSITSIAFSPDGELLLSGSSD-----GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eccceEEEEEECCCCcEEEEecCC-----CcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence            578889999999999988888877     999999988886 5666652 3 36777777 77776 4442    78999


Q ss_pred             EEEcCC-CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCC-EEE
Q 014007          198 VYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ-LLA  274 (432)
Q Consensus       198 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~-~l~  274 (432)
                      +|+... ......+..|...+..+.+++++..+  +..+..++.+++|+... .....+..|...|.+++|+|++. +++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  215 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL--ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA  215 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCCEE--EecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence            999987 78888888999999999999999833  32222499999999997 55666778999999999999998 555


Q ss_pred             EEcCCCceEEEEECCCCceEE-EEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007          275 TSSTKGTLVRIFNTLDGTLLQ-EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT  353 (432)
Q Consensus       275 ~~~~dg~~i~vwd~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (432)
                      +++.|+. |++||...+..+. .+..  |.... -..|++++.++++++.|+.+++|++.....                
T Consensus       216 ~~~~d~~-i~~wd~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------  275 (466)
T COG2319         216 SGSSDGT-IRLWDLSTGKLLRSTLSG--HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----------------  275 (466)
T ss_pred             EecCCCc-EEEEECCCCcEEeeecCC--CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----------------
Confidence            5599999 9999998888877 4654  33443 238999998999999999999999998762                


Q ss_pred             CCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                                        .+..+..|...|.++.|+|++..+++++.|+.+.+|+..
T Consensus       276 ------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         276 ------------------LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE  314 (466)
T ss_pred             ------------------EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence                              012225677889999999999999989999999999553

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3e-15  Score=140.06  Aligned_cols=283  Identities=13%  Similarity=0.137  Sum_probs=199.5

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe---EEEecCCCCCCCCCCeEEEEeCCCC
Q 014007           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI---LALVGGGPDPQYPLNKVMIWDDHQS  166 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~s~~~d~~~~~~~v~iwd~~~~  166 (432)
                      .-.|++|++++.....+.|.||...++.+.  ..+. +|...+..+.+.+..   .++.++..+     |.|++||...+
T Consensus        21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i--~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~-----G~I~vwd~~~~   92 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCTGNFVKVYSTATGECI--TSLE-DHTAPLTSVIVLPSSENANYLIVCSLD-----GTIRVWDWSDG   92 (792)
T ss_pred             ccccccCCcEEEEeeCCEEEEEecchHhhh--hhcc-cccCccceeeecCCCccceEEEEEecC-----ccEEEecCCCc
Confidence            357899999999999999999999988877  4665 788888888776543   466677777     99999999988


Q ss_pred             ceeEEeecCCceEEEEE-----------------------------------------------------------ecCc
Q 014007          167 RCIGELSFRSEVRSVKL-----------------------------------------------------------RRDR  187 (432)
Q Consensus       167 ~~~~~~~~~~~v~~~~~-----------------------------------------------------------~~~~  187 (432)
                      ..++++....++..+.+                                                           ++.|
T Consensus        93 ~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g  172 (792)
T KOG1963|consen   93 ELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG  172 (792)
T ss_pred             EEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc
Confidence            87776653333333322                                                           1111


Q ss_pred             cEEE--eCCeEEEEEcCCCeeeE---EE-eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-----Cceeeeec
Q 014007          188 IIVV--LEQKIFVYNFADLKLLH---QI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----KRTKFIMA  256 (432)
Q Consensus       188 ~~~~--~d~~i~i~d~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-----~~~~~~~~  256 (432)
                      .+..  .+..+.+|.........   .. ..|...+++.+++|+++.  ++ +|..||.|.+|.--.     .....+.-
T Consensus       173 e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~--~A-a~d~dGrI~vw~d~~~~~~~~t~t~lHW  249 (792)
T KOG1963|consen  173 EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY--LA-AGDSDGRILVWRDFGSSDDSETCTLLHW  249 (792)
T ss_pred             eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccce--EE-EeccCCcEEEEeccccccccccceEEEe
Confidence            1111  24456666665533100   00 123344678999999874  34 356899999996433     34567888


Q ss_pred             cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       257 ~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      |...|.+++|+++|.+|++|+..+. +.+|.+.+++ .+-+..  -.++|..+.+|||+.+.+....|+.|.+....+.+
T Consensus       250 H~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~-kqfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  250 HHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGK-KQFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             cccccceeEEecCCceEeecccceE-EEEEeecCCC-cccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence            9999999999999999999999999 9999999998 333333  44899999999999999999999999999887766


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      ....+.+....               .+.+         -+...+-.+.++++|.-+.++-.+..|.|.+|++-.
T Consensus       326 ~k~tIsgi~~~---------------~~~~---------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  326 IKSTISGIKPP---------------TPST---------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT  376 (792)
T ss_pred             hhhhccCccCC---------------Cccc---------cccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence            33322111000               0000         112234466788888778888899999999988744

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=7.1e-16  Score=137.46  Aligned_cols=290  Identities=15%  Similarity=0.189  Sum_probs=198.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEE-EEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEe-eeCCeEEEecCCCCCCCCCCeE
Q 014007           82 SSPPPTLLHISFNQDHGCFA-AGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEML-FRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~-~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      -.++..-+.|..+|||+|+. +|.-. .|++||+......+.+.+.    ..++.+. .+.|...++--..|     .+|
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD----ae~V~feiLsDD~SK~v~L~~D-----R~I  118 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD----AEVVDFEILSDDYSKSVFLQND-----RTI  118 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc----ccceeEEEeccchhhheEeecC-----cee
Confidence            34667778899999999864 55533 4999999987777665543    3344333 23333222222233     555


Q ss_pred             EEEeCCCCceeEEeecCCceEEEEEec-C-ccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007          159 MIWDDHQSRCIGELSFRSEVRSVKLRR-D-RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      .+.. .-| .-..+.-+..-.+++++. . ..+++ +...|+-++++.|+-+..+......++++.+++...  ++++ |
T Consensus       119 efHa-k~G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~-G  193 (703)
T KOG2321|consen  119 EFHA-KYG-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLAC-G  193 (703)
T ss_pred             eehh-hcC-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc--eEEe-c
Confidence            5443 111 112222334445566553 2 23333 577899999999999999988888999999988764  4554 6


Q ss_pred             CCCCcEEEEEccCCce-eee------eccCC-----ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc
Q 014007          236 LQKGQVRVEHYASKRT-KFI------MAHDS-----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (432)
Q Consensus       236 ~~d~~i~i~d~~~~~~-~~~------~~~~~-----~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~  303 (432)
                      +.+|.|..||.+.+.. ..+      ..|.+     .|+++.|+.+|-.+++|..+|. |.|||+++.+++..-. |...
T Consensus       194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~kd-h~~e  271 (703)
T KOG2321|consen  194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLVKD-HGYE  271 (703)
T ss_pred             ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceeecc-cCCc
Confidence            6899999999988432 222      23333     4999999999999999999999 9999999999886544 4456


Q ss_pred             CceEEEEECCC--CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007          304 AEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG  381 (432)
Q Consensus       304 ~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (432)
                      .+|..+.|.+.  +..+++. +...++|||-.+++....                                   + .+..
T Consensus       272 ~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~as-----------------------------------i-Ept~  314 (703)
T KOG2321|consen  272 LPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMAS-----------------------------------I-EPTS  314 (703)
T ss_pred             cceeeecccccCCCceEEec-chHHhhhcccccCCceee-----------------------------------c-cccC
Confidence            78999999775  3455554 567899999999984321                                   1 2333


Q ss_pred             CceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeeecccCCC
Q 014007          382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKP  428 (432)
Q Consensus       382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  428 (432)
                      .++.+++-|++.+++++..++.+..|-+. ..|.   -.+|++||+.
T Consensus       315 ~lND~C~~p~sGm~f~Ane~~~m~~yyiP-~LGP---aPrWCSfLdn  357 (703)
T KOG2321|consen  315 DLNDFCFVPGSGMFFTANESSKMHTYYIP-SLGP---APRWCSFLDN  357 (703)
T ss_pred             CcCceeeecCCceEEEecCCCcceeEEcc-ccCC---CchhhhHHHh
Confidence            48899999999999999999988887663 2222   3456666653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=4e-17  Score=145.05  Aligned_cols=247  Identities=13%  Similarity=0.157  Sum_probs=178.2

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC------CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (432)
                      .+..|.+.|+.+.|.|....|++++.++ +++|++..      .......+|. +|..+|.+++...++..+.+|+.|  
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~D--  365 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGID--  365 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccC--
Confidence            5677899999999999999999999555 99999921      2223345676 899999999999999999999999  


Q ss_pred             CCCCeEEEEeCCCC----------ceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcc
Q 014007          153 YPLNKVMIWDDHQS----------RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKG  218 (432)
Q Consensus       153 ~~~~~v~iwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~  218 (432)
                         |+|+.|++...          .....+. |.+.|+.++++.....++   +||++++|+...... ..+........
T Consensus       366 ---g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  366 ---GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             ---ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence               99999965421          1223344 899999999998665555   499999999876554 33322222111


Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccC---C-ceeeee-------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---K-RTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~-~~~~~~-------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd  287 (432)
                      -..++..........   .+.....+++..   . .+..+.       .....+..+.++|.+.+.+++..|+. |+++|
T Consensus       442 Plsvd~~ss~~a~~~---~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~d  517 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSL---ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFD  517 (577)
T ss_pred             cceEeeccchhHhhh---hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eeccc
Confidence            222222222212221   123333333333   1 111111       12245778899999999999999999 99999


Q ss_pred             CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      ..+++.+.....  |...++++++.|+|.+|++++.|+.+++|.+....+..
T Consensus       518 n~~~~~l~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  518 NKTGKILHSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             ccccccchheee--ccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence            999999988875  66899999999999999999999999999998776544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=6.9e-16  Score=131.46  Aligned_cols=231  Identities=11%  Similarity=0.098  Sum_probs=166.7

Q ss_pred             CcccCCCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEcCCCee-----EEEeecccCcceeEEEEeeeCC-eEEEecCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCN-ILALVGGG  148 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~-i~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~  148 (432)
                      +.....+|.+.|..++|+|-.. .+|+|+++. |.||.+.....     .....+. +|...|--+.|+|. ...|++++
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhcc
Confidence            3456789999999999999654 678888655 99999854322     1234565 89999999999985 45777888


Q ss_pred             CCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcc-eEEEec
Q 014007          149 PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKG-LCAVSQ  224 (432)
Q Consensus       149 ~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~  224 (432)
                      .|     .+|.+||+.+|+.+.++.|...|.++.|+.||.++++   |..|+|||.++++.+..-..|.+.-. ...|-.
T Consensus       152 ~D-----n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~  226 (472)
T KOG0303|consen  152 SD-----NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA  226 (472)
T ss_pred             CC-----ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence            88     9999999999999999999999999999999999995   89999999999999888766665332 345556


Q ss_pred             CCCcEEEEeecCCCCcEEEEEccCC--ce-eeeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCce-EEEEEe
Q 014007          225 GVGSLVLVCPGLQKGQVRVEHYASK--RT-KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL-LQEVRR  299 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i~d~~~~--~~-~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~-~~~~~~  299 (432)
                      ++..+....+...+..+-+||...-  .+ ..-......|.---|.+|.+.+..++ .|+. ||.|.+..-.. ++-+..
T Consensus       227 ~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~hyln~  305 (472)
T KOG0303|consen  227 SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVHYLNT  305 (472)
T ss_pred             cCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeEEecc
Confidence            6652211222246889999998762  11 11123455666667888888776554 6888 99999876553 222222


Q ss_pred             CCCcCceEEEEECCC
Q 014007          300 GADRAEIYSLAFSSN  314 (432)
Q Consensus       300 ~~~~~~i~~~~~s~~  314 (432)
                      -....+-..+.|-|.
T Consensus       306 f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  306 FSSKEPQRGMGFMPK  320 (472)
T ss_pred             cccCCcccccccccc
Confidence            113345567777764

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.74  E-value=2.6e-16  Score=139.12  Aligned_cols=238  Identities=14%  Similarity=0.186  Sum_probs=147.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeE----EEeecccCcceeEEEEe---eeCCeEEEecCCCCCCCCCCeEE
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI----FRRDFERGGGIGVVEML---FRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~----~~~~~~~~~~~~v~~~~---~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      .+....++-.|.+|+..-.+.+.+|+.......    ..+.+. +......++.   -.+.+.-+..+-.-     |.|.
T Consensus       125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~-gt~P~cHdfn~~~a~~~g~dllIGf~t-----Gqvq  198 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYK-GTSPTCHDFNSFTATPKGLDLLIGFTT-----GQVQ  198 (636)
T ss_pred             ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhccc-CCCCceecccccccCCCCcceEEeecc-----CceE
Confidence            344555556677777776666888877532211    112222 2222222221   12333333333333     7888


Q ss_pred             EEeCCCCceeEEee-----cCCceEEEEEecC--ccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007          160 IWDDHQSRCIGELS-----FRSEVRSVKLRRD--RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       160 iwd~~~~~~~~~~~-----~~~~v~~~~~~~~--~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      +.|....+..+.+.     .+..|+++.|-|.  +.+++  .+|.+++||..-.      ..  .........+++..+.
T Consensus       199 ~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~--~t~p~~~~~k~~~~f~  270 (636)
T KOG2394|consen  199 LIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CG--ATAPSYQALKDGDQFA  270 (636)
T ss_pred             EecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc------cc--CCCCcccccCCCCeeE
Confidence            88866533222222     4578999999984  45555  4999999996210      00  0111222334444443


Q ss_pred             EEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~  310 (432)
                      +..+-        .......+..+.--.+.|..++|+|||++||+.+.||. +||||..+.+++..++.  .-+...|++
T Consensus       271 i~t~k--------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvc  339 (636)
T KOG2394|consen  271 ILTSK--------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVC  339 (636)
T ss_pred             Eeeee--------ccccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEE
Confidence            32210        00011334444444568999999999999999999999 99999998887766653  337899999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 014007          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP  349 (432)
Q Consensus       311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  349 (432)
                      |||||+||++|++|.-|.||.+...+.+..-.+|..+++
T Consensus       340 WSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs  378 (636)
T KOG2394|consen  340 WSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS  378 (636)
T ss_pred             EcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence            999999999999999999999999886555544444444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=4.4e-16  Score=145.79  Aligned_cols=232  Identities=14%  Similarity=0.072  Sum_probs=159.3

Q ss_pred             cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecC
Q 014007          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD  186 (432)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  186 (432)
                      .|.+||.+....   +.+. .+...+....|+|++..++..+.+.  ....|++||+.+++........+....++|+||
T Consensus       185 ~i~i~d~dg~~~---~~lt-~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD  258 (429)
T PRK01742        185 EVRVADYDGFNQ---FIVN-RSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD  258 (429)
T ss_pred             EEEEECCCCCCc---eEec-cCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence            388888765543   2333 4566789999999998877654320  015799999988764333223444557899999


Q ss_pred             ccEEEe----CCe--EEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccC
Q 014007          187 RIIVVL----EQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHD  258 (432)
Q Consensus       187 ~~~~~~----d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~  258 (432)
                      |..++.    +|.  |++||+.+++. ..+..+...+....|+|+|+.+++++  ..++...||+++.  .....+ .+.
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s--~~~g~~~I~~~~~~~~~~~~l-~~~  334 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTS--DRSGSPQVYRMSASGGGASLV-GGR  334 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEe-cCC
Confidence            987762    554  55567665553 44555555677899999999876653  3567778887654  333333 343


Q ss_pred             CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC--CC
Q 014007          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV--NS  336 (432)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~  336 (432)
                      .  .+..|+|||++|+..+.++  +.+||+.+++.......    .....+.|+|||++|+.++.++.+.+|++..  ++
T Consensus       335 ~--~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~~lt~~----~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~  406 (429)
T PRK01742        335 G--YSAQISADGKTLVMINGDN--VVKQDLTSGSTEVLSST----FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR  406 (429)
T ss_pred             C--CCccCCCCCCEEEEEcCCC--EEEEECCCCCeEEecCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            3  4678999999998888765  67799998876533221    1235688999999999999999888888753  32


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccC
Q 014007          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ  391 (432)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  391 (432)
                      .                                   ...+..|++.+..++|+|-
T Consensus       407 ~-----------------------------------~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        407 F-----------------------------------KARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             c-----------------------------------eEEccCCCCCCCCcccCCC
Confidence            1                                   3346667788888999984

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=3.4e-15  Score=139.46  Aligned_cols=211  Identities=11%  Similarity=0.070  Sum_probs=144.7

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC---CCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEe
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG---PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR  184 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~---~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~  184 (432)
                      |.+||.+.....   .+. .+...+....|+|++..++...   .+     ..|++|++.+++........+.+..+.|+
T Consensus       181 l~~~d~dg~~~~---~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~-----~~i~i~dl~~G~~~~l~~~~~~~~~~~~S  251 (429)
T PRK03629        181 LRVSDYDGYNQF---VVH-RSPQPLMSPAWSPDGSKLAYVTFESGR-----SALVIQTLANGAVRQVASFPRHNGAPAFS  251 (429)
T ss_pred             EEEEcCCCCCCE---Eee-cCCCceeeeEEcCCCCEEEEEEecCCC-----cEEEEEECCCCCeEEccCCCCCcCCeEEC
Confidence            777777655433   122 2556788999999998776432   22     57999999888654443345556678999


Q ss_pred             cCccEEEe----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC--cEEEEEccCCceeeeec
Q 014007          185 RDRIIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMA  256 (432)
Q Consensus       185 ~~~~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~  256 (432)
                      |||..++.    ++  .|++||+.+++..+ +......+....|+|+|+.+++++  ..++  .|.++|+.++....+..
T Consensus       252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s--~~~g~~~Iy~~d~~~g~~~~lt~  328 (429)
T PRK03629        252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTS--DQAGRPQVYKVNINGGAPQRITW  328 (429)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEe--CCCCCceEEEEECCCCCeEEeec
Confidence            99987772    33  69999998876543 333344566889999999877654  2334  45555666666666655


Q ss_pred             cCCceeEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe---EEEE
Q 014007          257 HDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT---VHVF  330 (432)
Q Consensus       257 ~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i~iw  330 (432)
                      +........|+|||++|+..+.+   .. |++||+.+++.. .+...   .......|+|||++|+.++.++.   +.++
T Consensus       329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~-I~~~dl~~g~~~-~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~  403 (429)
T PRK03629        329 EGSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLV  403 (429)
T ss_pred             CCCCccCEEECCCCCEEEEEEccCCCce-EEEEECCCCCeE-EeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            55566788999999998876543   34 889999888643 34321   22356889999999999887764   6667


Q ss_pred             EecCC
Q 014007          331 NLKVN  335 (432)
Q Consensus       331 d~~~~  335 (432)
                      ++...
T Consensus       404 ~~~G~  408 (429)
T PRK03629        404 STDGR  408 (429)
T ss_pred             ECCCC
Confidence            76443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=9.3e-15  Score=116.90  Aligned_cols=197  Identities=11%  Similarity=0.148  Sum_probs=145.4

Q ss_pred             eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC---------c-eeEEee-cCCceEEEEEecCccEEEeCCeEEEE
Q 014007          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---------R-CIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVY  199 (432)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~---------~-~~~~~~-~~~~v~~~~~~~~~~~~~~d~~i~i~  199 (432)
                      .|..-+++|...+++.++.+     |.|.++.+.+.         + .+...+ |.++|+.++|..+-.+.+.||.|+-|
T Consensus        12 tvf~qa~sp~~~~l~agn~~-----G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw   86 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLF-----GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGW   86 (325)
T ss_pred             HHHHHhhCCcceEEEEecCC-----CeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEe
Confidence            34555678889999999998     99999987531         1 233334 99999999999665555579999999


Q ss_pred             EcCCCee------eEEEee-------ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-eeeccCCceeEEE
Q 014007          200 NFADLKL------LHQIET-------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFA  265 (432)
Q Consensus       200 d~~~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~~~~~i~~~~  265 (432)
                      ..+....      +.+...       .-..|+.+.+.|..+.++++.   .|+.++-||+.+++++ .+.+|...|.++.
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVV  163 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence            8765321      111111       123467788898888877653   5899999999998765 5889999999999


Q ss_pred             EcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc--------CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR--------AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       266 ~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      -......+++|++||+ +|+||+++++++..+....++        ..|.+++-  +..+|++|+ .-.+.+|+++..++
T Consensus       164 ~R~~~~qilsG~EDGt-vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~  239 (325)
T KOG0649|consen  164 GRNANGQILSGAEDGT-VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSES  239 (325)
T ss_pred             ecccCcceeecCCCcc-EEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCc
Confidence            8555556889999999 999999999999888753332        24555554  556888776 45699999998875


Q ss_pred             CC
Q 014007          338 SA  339 (432)
Q Consensus       338 ~~  339 (432)
                      ..
T Consensus       240 t~  241 (325)
T KOG0649|consen  240 TC  241 (325)
T ss_pred             eE
Confidence            43

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=1.6e-14  Score=128.72  Aligned_cols=291  Identities=11%  Similarity=0.168  Sum_probs=194.3

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC-----CeEEEEe
Q 014007           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL-----NKVMIWD  162 (432)
Q Consensus        88 v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~-----~~v~iwd  162 (432)
                      .+..+++++|+++|.+.+..++|++......+.. ..   .. .+.++.|+|.+.++.+-..-..+.+     -.+.+|+
T Consensus        37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt-~~---~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLC-VE---LK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEE-ec---cc-eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            6778999999999999998899999887763322 21   22 7889999999998876543211111     4578999


Q ss_pred             CCCCceeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe----ec
Q 014007          163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC----PG  235 (432)
Q Consensus       163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g  235 (432)
                      ++++.....+. -...-++..|+.|..+.+  ..+.+++|++...+.+. -..+...++.+.++|.+....+++    .+
T Consensus       112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k  190 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKK  190 (566)
T ss_pred             eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCC
Confidence            99966665665 222227899999988877  58899999987633221 112344555566665543332222    11


Q ss_pred             CCCCcEEEEEcc---------------------------------------------------------CCceeeeeccC
Q 014007          236 LQKGQVRVEHYA---------------------------------------------------------SKRTKFIMAHD  258 (432)
Q Consensus       236 ~~d~~i~i~d~~---------------------------------------------------------~~~~~~~~~~~  258 (432)
                      +.-+.|+||.+.                                                         +.....-....
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~  270 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE  270 (566)
T ss_pred             CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence            223344444333                                                         11111111236


Q ss_pred             CceeEEEEcCCCCEEEE--EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC---CCeEEEEEec
Q 014007          259 SRIACFALTQDGQLLAT--SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNLK  333 (432)
Q Consensus       259 ~~i~~~~~sp~~~~l~~--~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iwd~~  333 (432)
                      ++|+++.|+|+|+-+++  |-.-.. +.|||+ .+..+..+.    +++-.++-|+|.|++|+.++-   .|.|-|||+.
T Consensus       271 GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnl-r~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  271 GPVHDVTWSPSGREFAVVYGFMPAK-VTIFNL-RGKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCceEEEECCCCCEEEEEEecccce-EEEEcC-CCCEeEeCC----CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            79999999999987665  455667 999996 566776665    256789999999999998874   5789999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec------CCeEEEE
Q 014007          334 VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM------DGSFYRC  407 (432)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw  407 (432)
                      +.+++..                                   +....  -+-+.|+|||+++++++.      |+.++||
T Consensus       345 n~K~i~~-----------------------------------~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw  387 (566)
T KOG2315|consen  345 NRKLIAK-----------------------------------FKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIW  387 (566)
T ss_pred             chhhccc-----------------------------------cccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence            9775432                                   22222  456899999999998876      7889999


Q ss_pred             EecCCC-----CC-cceEeeecccCC
Q 014007          408 QFDPVN-----GG-EMTQLEYNNFLK  427 (432)
Q Consensus       408 ~~~~~~-----~~-~~~~~~~~~~~~  427 (432)
                      ++.-..     -+ |+.++.|..+..
T Consensus       388 hytG~~l~~~~f~sEL~qv~W~P~~~  413 (566)
T KOG2315|consen  388 HYTGSLLHEKMFKSELLQVEWRPFND  413 (566)
T ss_pred             EecCceeehhhhhHhHhheeeeecCC
Confidence            985521     12 466666665443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.71  E-value=5.6e-14  Score=127.43  Aligned_cols=276  Identities=14%  Similarity=0.145  Sum_probs=170.4

Q ss_pred             CEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007           98 GCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (432)
Q Consensus        98 ~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~  175 (432)
                      +++++..  ++.|.+.|.++.+..  ..+..+. .....+.+++++.++...+.|     |.|.++|+.+++.+.++...
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~--~~i~~~~-~~h~~~~~s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~~G   77 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVV--ARIPTGG-APHAGLKFSPDGRYLYVANRD-----GTVSVIDLATGKVVATIKVG   77 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEE--EEEE-ST-TEEEEEE-TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE-S
T ss_pred             cEEEEEecCCCEEEEEECCCCeEE--EEEcCCC-CceeEEEecCCCCEEEEEcCC-----CeEEEEECCcccEEEEEecC
Confidence            3454443  455999998887766  4554222 234557789988877777788     99999999999999999987


Q ss_pred             CceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeeccC-------CcceEEEecCCCcEEEEeecCCCCcEEEE
Q 014007          176 SEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIAN-------PKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (432)
Q Consensus       176 ~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~d~~i~i~  244 (432)
                      ....++++++||++++.    .+.+.++|.++.+.++.+.....       .+..+..++....+++..  .+.+.|.+.
T Consensus        78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--kd~~~I~vV  155 (369)
T PF02239_consen   78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--KDTGEIWVV  155 (369)
T ss_dssp             SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE--TTTTEEEEE
T ss_pred             CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE--ccCCeEEEE
Confidence            88899999999999883    78999999999999988865432       333455566666554443  345888888


Q ss_pred             EccCCc-e-eeeeccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCC--C-----------------
Q 014007          245 HYASKR-T-KFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGA--D-----------------  302 (432)
Q Consensus       245 d~~~~~-~-~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~--~-----------------  302 (432)
                      |..... + ..............|+|++++++++ ..... |-++|.++++.+..+..+.  |                 
T Consensus       156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~  234 (369)
T PF02239_consen  156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWA  234 (369)
T ss_dssp             ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEE
T ss_pred             EeccccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEEeeccccccccccccccCCCcceEEe
Confidence            876632 2 2233445667889999999987765 34445 8888887765544332110  0                 


Q ss_pred             ---------------------------------cCceEEEEECCCCCEEEEE----eCCCeEEEEEecCCCCCCCCCCCC
Q 014007          303 ---------------------------------RAEIYSLAFSSNAQWLAVS----SDKGTVHVFNLKVNSGSARSEPRS  345 (432)
Q Consensus       303 ---------------------------------~~~i~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~  345 (432)
                                                       .+.-.-+..+|+++++.+.    ...++|.++|.++.+...      
T Consensus       235 ~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~------  308 (369)
T PF02239_consen  235 TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK------  308 (369)
T ss_dssp             EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE------
T ss_pred             eccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE------
Confidence                                             0111345668888888877    355788888888865211      


Q ss_pred             CCCCCCCCCCceeEeecccceeecceeeEEEEe-cCCCceEEEEccCCCEEEEEecC--CeEEEEEecCCCCCcceEee
Q 014007          346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAFGHQKNTVVILGMD--GSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d--g~v~iw~~~~~~~~~~~~~~  421 (432)
                                                   .+.. ....+..+.|++||+++..+..+  |.|.+||  ..+.+++.+++
T Consensus       309 -----------------------------~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D--~~Tl~~~~~i~  356 (369)
T PF02239_consen  309 -----------------------------TITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD--AKTLKEKKRIP  356 (369)
T ss_dssp             ------------------------------HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE--TTTTEEEEEEE
T ss_pred             -----------------------------EEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE--CCCcEEEEEEE
Confidence                                         1111 11247789999999987766554  4688855  56667776665

...

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.8e-14  Score=134.76  Aligned_cols=211  Identities=13%  Similarity=0.091  Sum_probs=140.0

Q ss_pred             CeEEEEeCCCCceeEEe-ecCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          156 NKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      ..|.++|.. +.....+ .+...+.+.+|+|||+.++.      ...|++||+.+++... +...........|+|||+.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            578888864 4443444 47788999999999988772      2369999998876543 3333345567899999998


Q ss_pred             EEEEeecCCCCcEEEE--EccCCceeeeeccCCceeEEEEcCCCCEEEEEcC-CCceEEEE--ECCCCceEEEEEeCCCc
Q 014007          229 LVLVCPGLQKGQVRVE--HYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIF--NTLDGTLLQEVRRGADR  303 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~--d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vw--d~~~~~~~~~~~~~~~~  303 (432)
                      +++..  +.++...||  |+.++....+..+........|+|||+.|+..+. ++. ..||  ++.+++... +..  ..
T Consensus       254 la~~~--~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~~~-lt~--~g  327 (427)
T PRK02889        254 LAVAL--SRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAAQR-VTF--TG  327 (427)
T ss_pred             EEEEE--ccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCceEE-Eec--CC
Confidence            87654  355665555  5555666666666666778899999998886654 344 5555  444554332 221  11


Q ss_pred             CceEEEEECCCCCEEEEEeCCC---eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC
Q 014007          304 AEIYSLAFSSNAQWLAVSSDKG---TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE  380 (432)
Q Consensus       304 ~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (432)
                      .......|+|||++|+..+.++   .|++||+.+++..                                    .+.. .
T Consensus       328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~------------------------------------~lt~-~  370 (427)
T PRK02889        328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT------------------------------------ALTD-T  370 (427)
T ss_pred             CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE------------------------------------EccC-C
Confidence            2345689999999998777554   6999999876521                                    1111 1


Q ss_pred             CCceEEEEccCCCEEEEEecC-CeEEEEEecC
Q 014007          381 GSPYIVAFGHQKNTVVILGMD-GSFYRCQFDP  411 (432)
Q Consensus       381 ~~v~~~~~s~~~~~l~~~~~d-g~v~iw~~~~  411 (432)
                      .......|+|||+.|+.++.+ |.-.+|-++.
T Consensus       371 ~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        371 TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            123568999999998877764 4444555555

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3e-16  Score=137.13  Aligned_cols=286  Identities=13%  Similarity=0.102  Sum_probs=208.9

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPL  155 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~  155 (432)
                      ..+..|.+-|..|.|+..|..|++|+|.. |.+||.......  ..+..+|...|..-.|-|  +-.-+++++.|     
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d-----  208 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRTIVTSSRD-----  208 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcCceecccc-----
Confidence            56888999999999999999999999665 999999877666  455567888887777765  35678888888     


Q ss_pred             CeEEEEeCCC-Ccee---EEeecCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEEEe---eccC---CcceEE
Q 014007          156 NKVMIWDDHQ-SRCI---GELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIE---TIAN---PKGLCA  221 (432)
Q Consensus       156 ~~v~iwd~~~-~~~~---~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~---~~~~---~~~~~~  221 (432)
                      |.|++=.+.. +.+.   +..+|.++|..++.-|+..+.+    -|+.+.-+|++++.+-..+.   ....   ....++
T Consensus       209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            9999887653 3332   2233999999999999866554    28889999998865433332   2222   233566


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccCC-------ceeeee------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYASK-------RTKFIM------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~-------~~~~~~------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~  288 (432)
                      ..|...+. ++. |+.|..+++||.+.-       .+..+.      ...-.|++++|+.++.-|.++..|-. |++|.-
T Consensus       289 ~~P~nt~~-faV-gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~  365 (559)
T KOG1334|consen  289 VDPRNTNE-FAV-GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNK  365 (559)
T ss_pred             cCCCCccc-ccc-CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEecc
Confidence            66665543 343 558999999998761       122222      22346999999988877777788887 999953


Q ss_pred             C--CC----------ceEEE-EEeCCCcCceEEEEE-CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007          289 L--DG----------TLLQE-VRRGADRAEIYSLAF-SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (432)
Q Consensus       289 ~--~~----------~~~~~-~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (432)
                      .  .|          ..+.. +++|.....|..+-| -|...|+++|++-|.|.||+-.+++.+.               
T Consensus       366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~---------------  430 (559)
T KOG1334|consen  366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR---------------  430 (559)
T ss_pred             ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH---------------
Confidence            2  22          22333 777666667888865 6788999999999999999999987332               


Q ss_pred             CceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                                          .+++....|+|+.=+|--..||+.|-|..|+||.-
T Consensus       431 --------------------~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  431 --------------------FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             --------------------HhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence                                23333447999999999999999999999999975

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.70  E-value=4.1e-14  Score=133.09  Aligned_cols=223  Identities=13%  Similarity=0.109  Sum_probs=151.0

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (432)
                      ..|.++|...........+...+...+|+|||+.++.      ...|++||+.+++... +.........++|+|+++.+
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            5788998754444333346667899999999998883      2479999998875533 33344455678999999988


Q ss_pred             EEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCC---ceEEEEECCCCceEEEEEeCCCcCce
Q 014007          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEI  306 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~~i~vwd~~~~~~~~~~~~~~~~~~i  306 (432)
                      ++......+..|++||+.++....+..+........|+|+|+.|+..+..+   . |+++|+.+++.. .+..  +...+
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~-~l~~--~~~~~  324 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVR-RLTF--RGGYN  324 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEE-Eeec--CCCCc
Confidence            765433334568899998877777766666666789999999887765432   5 888898777654 3332  23456


Q ss_pred             EEEEECCCCCEEEEEeCCC---eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCc
Q 014007          307 YSLAFSSNAQWLAVSSDKG---TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP  383 (432)
Q Consensus       307 ~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  383 (432)
                      ..+.|+|+|++|+.++.++   .|.+||+.++...                                    .+..+ ...
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~------------------------------------~l~~~-~~~  367 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER------------------------------------VLTDT-GLD  367 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE------------------------------------EccCC-CCC
Confidence            7889999999999888765   7888888775410                                    11111 123


Q ss_pred             eEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEe
Q 014007          384 YIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQL  420 (432)
Q Consensus       384 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~  420 (432)
                      ...+|+|||++|+.++.++....+.+....|+....+
T Consensus       368 ~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~  404 (417)
T TIGR02800       368 ESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL  404 (417)
T ss_pred             CCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence            4568999999998887765433333333445444333

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=5.2e-15  Score=138.86  Aligned_cols=214  Identities=11%  Similarity=0.097  Sum_probs=144.2

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (432)
                      |.+||.+.....   .+. .+...+....|+|++..++..+....  ...|++||+.+++........+...+.+|+|||
T Consensus       186 l~i~D~~g~~~~---~lt-~~~~~v~~p~wSpDg~~la~~s~~~~--~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        186 LQVADSDGYNPQ---TIL-RSAEPILSPAWSPDGKKLAYVSFERG--RSAIYVQDLATGQRELVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEECCCCCCce---Eee-cCCCccccccCCCCCCEEEEEecCCC--CcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence            788887644332   232 35567888999999987776542200  157999999888754433355556688999999


Q ss_pred             cEEEe----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC--cEEEEEccCCceeeeeccCC
Q 014007          188 IIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDS  259 (432)
Q Consensus       188 ~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~~~  259 (432)
                      ..++.    ++  .|++||+.+++.. .+..+.......+|+|+|+.+++.+  ..+|  .|.++|+.++....+..+..
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~s--d~~g~~~iy~~dl~~g~~~~lt~~g~  336 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTS--DRGGRPQIYRVAASGGSAERLTFQGN  336 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEeecCCC
Confidence            87652    33  6999999887643 3444444445789999999876654  2344  46666776766655544444


Q ss_pred             ceeEEEEcCCCCEEEEEcCCC---ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC---CeEEEEEec
Q 014007          260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLK  333 (432)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~dg---~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~  333 (432)
                      ....++|+|+|++|+..+.++   . |.+||+.+++.. .+..   ........|+|||++|+..+.+   +.|+++++.
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            556789999999998765433   5 899999888754 3432   2234567999999988877643   357777775


Q ss_pred             CC
Q 014007          334 VN  335 (432)
Q Consensus       334 ~~  335 (432)
                      ..
T Consensus       412 g~  413 (433)
T PRK04922        412 GR  413 (433)
T ss_pred             CC
Confidence            43

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=3.5e-16  Score=139.19  Aligned_cols=241  Identities=14%  Similarity=0.073  Sum_probs=179.8

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC--------CceeEEee-cCCceEEEEEecCccEEEe---CC
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--------SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQ  194 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~  194 (432)
                      .|...+..+.|.+-...+++++.|     |.+.+|++..        -+++.++. |.++|.|+++..++..+++   ||
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed-----~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASED-----GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEeccc-----cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence            577788889999999999999999     9999999932        14667777 9999999999999998884   99


Q ss_pred             eEEEEEcCCC----------eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec--cCCcee
Q 014007          195 KIFVYNFADL----------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIA  262 (432)
Q Consensus       195 ~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~i~  262 (432)
                      +|+.|++...          .....+.+|.+.+..++++.....++ .|  +.||++++|+.......++..  ..+...
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll-sc--s~DgTvr~w~~~~~~~~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL-SC--SSDGTVRLWEPTEESPCTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee-ee--cCCceEEeeccCCcCccccCCccccCCcc
Confidence            9999965421          23456778999999999999887754 33  479999999988765544432  233445


Q ss_pred             EEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-----CceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          263 CFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-----AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       263 ~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      ++.+-... .++++...-+. -.++++.....+..+......     ..+..+.++|.+.+.+++-.|+.|+++|..+++
T Consensus       444 svd~~ss~~a~~~~s~~~~~-~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGY-TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             eEeeccchhHhhhhhccccc-ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            66654332 22223222332 334455555555555432211     357788999999999999999999999999988


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .+                                   .....|...++++++.|+|-+|++++.||.+++|+++.
T Consensus       523 ~l-----------------------------------~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  523 IL-----------------------------------HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             cc-----------------------------------hheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence            53                                   23456777899999999999999999999999999866

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.69  E-value=6.2e-15  Score=122.50  Aligned_cols=221  Identities=14%  Similarity=0.103  Sum_probs=160.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCe-eEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw  161 (432)
                      -..+|+|.+|++|+..+|++..+. |.||.....+ .....++. .|...++.+.|.+....+++++.|     ..-++|
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d-----rnayVw   82 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD-----RNAYVW   82 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCC-----CCcccc
Confidence            457899999999999999998665 9999987666 44456676 799999999999999999999999     999999


Q ss_pred             eC-CCCc--eeEE-eecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeee----EEEeeccCCcceEEEecCCCcEE
Q 014007          162 DD-HQSR--CIGE-LSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLL----HQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       162 d~-~~~~--~~~~-~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      .. ..++  +... ++++...+++.|+|....++.   ...|.||-++...--    +.-+.+...|.++.|+|++  .+
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn--VL  160 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN--VL  160 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc--ce
Confidence            98 4443  2233 348999999999999888884   346777776543221    1112344566778888875  34


Q ss_pred             EEeecCCCCcEEEEEcc-----CCc--------------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC
Q 014007          231 LVCPGLQKGQVRVEHYA-----SKR--------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~-----~~~--------------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~  291 (432)
                      ++ +|+.|+.+++|..-     .+.              +..+....+.+..+.|+|+|..|+-.+.|.. +.+-|....
T Consensus       161 la-aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~p  238 (361)
T KOG1523|consen  161 LA-AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAGP  238 (361)
T ss_pred             ec-ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCCC
Confidence            44 57799999998642     211              1122245678999999999999999999999 999986655


Q ss_pred             c-eEEEEEeCCCcCceEEEEECCCCC
Q 014007          292 T-LLQEVRRGADRAEIYSLAFSSNAQ  316 (432)
Q Consensus       292 ~-~~~~~~~~~~~~~i~~~~~s~~~~  316 (432)
                      . .+......  .-+..++.|-.+..
T Consensus       239 ~~~v~~~~~~--~lP~ls~~~ise~~  262 (361)
T KOG1523|consen  239 SERVQSVATA--QLPLLSVSWISENS  262 (361)
T ss_pred             chhccchhhc--cCCceeeEeecCCc
Confidence            3 33333322  25677777755443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3e-15  Score=127.54  Aligned_cols=252  Identities=12%  Similarity=0.079  Sum_probs=179.6

Q ss_pred             EEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC------CceeEEee--cCCceEEEEEecCccEEE
Q 014007          120 FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------SRCIGELS--FRSEVRSVKLRRDRIIVV  191 (432)
Q Consensus       120 ~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~------~~~~~~~~--~~~~v~~~~~~~~~~~~~  191 (432)
                      +.+.+. +|...|.++.|+.++.+|++|+.|     ..+++|++..      .+++....  |.+.|.+++|.-..++++
T Consensus        48 ~qKD~~-~H~GCiNAlqFS~N~~~L~SGGDD-----~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~  121 (609)
T KOG4227|consen   48 CQKDVR-EHTGCINALQFSHNDRFLASGGDD-----MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLY  121 (609)
T ss_pred             hhhhhh-hhccccceeeeccCCeEEeecCCc-----ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEe
Confidence            334454 799999999999999999999999     9999999753      35666666  678999999999988888


Q ss_pred             e---CCeEEEEEcCCCeeeEEEee--ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeeccCCcee
Q 014007          192 L---EQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIA  262 (432)
Q Consensus       192 ~---d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~~i~  262 (432)
                      +   +++|...|+++.+.+..+..  ..+.|..+..+|-.+.++++   +.++.|.+||.+...    +...........
T Consensus       122 SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~---t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~  198 (609)
T KOG4227|consen  122 SGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVV---TRAKLVSFIDNRDRQNPISLVLPANSGKNFY  198 (609)
T ss_pred             cCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEE---ecCceEEEEeccCCCCCCceeeecCCCccce
Confidence            6   78999999999887776632  23478888999986655443   378999999998743    223334556778


Q ss_pred             EEEEcCC-CCEEEEEcCCCceEEEEECCCCce-EEEE---EeCC-CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          263 CFALTQD-GQLLATSSTKGTLVRIFNTLDGTL-LQEV---RRGA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       263 ~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~-~~~~---~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      .+-|+|. ..+|++.+..+. +-+||.+..+. +...   .+.. ....-.++.|+|+|..|.+--....-.+||+-..+
T Consensus       199 t~~F~P~~P~Li~~~~~~~G-~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R  277 (609)
T KOG4227|consen  199 TAEFHPETPALILVNSETGG-PNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR  277 (609)
T ss_pred             eeeecCCCceeEEeccccCC-CCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence            8999994 567888888888 99999876432 1111   1100 11234678999999998887666666788887765


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEeeccc-ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          337 GSARSEPRSTSDPTLPTSSLSFIKGVLP-KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +.-                +.+  ..-+ .|+           ....+.+++|..| ..+++|+.+=.|++|.+..
T Consensus       278 ~~V----------------~k~--D~N~~GY~-----------N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  278 CFV----------------LKS--DHNPNGYC-----------NIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPR  323 (609)
T ss_pred             cee----------------Eec--cCCCCcce-----------eeeeeeeeeeecc-eeeeccCcccceEEEecCC
Confidence            310                000  0000 000           0113567888766 4499999999999999965

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=9.9e-16  Score=128.24  Aligned_cols=185  Identities=14%  Similarity=0.187  Sum_probs=141.9

Q ss_pred             eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecC-CCcEEEEeecCCCCcEEEEEccCCc---eeeeeccC-CceeEEEE
Q 014007          192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG-VGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHD-SRIACFAL  266 (432)
Q Consensus       192 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~-~~i~~~~~  266 (432)
                      +.|.|++||..+++.+..++++...++.+.|..+ +.+.++.  ++.||.|++||++...   ...+..+. .+..|++.
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s--~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~  125 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVIS--CSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL  125 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEE--eccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence            5999999999999999999999998888998775 4444443  3589999999999832   23344454 46678877


Q ss_pred             cCCCCEEEEEcC----CCceEEEEECCCCce-EEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCCCCC
Q 014007          267 TQDGQLLATSST----KGTLVRIFNTLDGTL-LQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLKVNSGSAR  340 (432)
Q Consensus       267 sp~~~~l~~~~~----dg~~i~vwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~  340 (432)
                      .-.++.+++|..    +.. |.+||++..+. +..+.. .|...|+++.|+|. -.+|++|+.||-|.|||++.......
T Consensus       126 nck~~ii~~GtE~~~s~A~-v~lwDvR~~qq~l~~~~e-SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa  203 (376)
T KOG1188|consen  126 NCKKNIIACGTELTRSDAS-VVLWDVRSEQQLLRQLNE-SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA  203 (376)
T ss_pred             cCcCCeEEeccccccCceE-EEEEEeccccchhhhhhh-hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh
Confidence            767888888764    445 99999998876 666654 37789999999995 56899999999999999987642110


Q ss_pred             CCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC-CEEEEEecCCeEEEEEecCC
Q 014007          341 SEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK-NTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~  412 (432)
                                                      +...-.|...|..+.|..++ +.|.+-+..+.+.+|+++..
T Consensus       204 --------------------------------L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  204 --------------------------------LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             --------------------------------HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence                                            11223355568899998876 46899999999999999654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.69  E-value=8.3e-16  Score=135.94  Aligned_cols=206  Identities=13%  Similarity=0.130  Sum_probs=162.0

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCc
Q 014007           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE  177 (432)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~  177 (432)
                      ++++.+|+.+.|.+-.. +  ..+... .|...+.+-.|+++|..+++.+.|     |.|++|. ++|....++. ...+
T Consensus        78 ~~i~s~DGkf~il~k~~-r--VE~sv~-AH~~A~~~gRW~~dGtgLlt~GED-----G~iKiWS-rsGMLRStl~Q~~~~  147 (737)
T KOG1524|consen   78 LLICSNDGRFVILNKSA-R--VERSIS-AHAAAISSGRWSPDGAGLLTAGED-----GVIKIWS-RSGMLRSTVVQNEES  147 (737)
T ss_pred             EEEEcCCceEEEecccc-h--hhhhhh-hhhhhhhhcccCCCCceeeeecCC-----ceEEEEe-ccchHHHHHhhcCce
Confidence            44455566677776332 1  123443 799999999999999999999999     9999999 6776665655 7889


Q ss_pred             eEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee
Q 014007          178 VRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM  255 (432)
Q Consensus       178 v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~  255 (432)
                      |+|++|.|+..-++  ..+.+.|=-+.....+-.++.|.+-+-++.|++..+  ++++ |++|-..++||-.+..+..-.
T Consensus       148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~--lI~s-gGED~kfKvWD~~G~~Lf~S~  224 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN--IIAS-GGEDFRFKIWDAQGANLFTSA  224 (737)
T ss_pred             eEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCcccc--ceee-cCCceeEEeecccCcccccCC
Confidence            99999999876555  377888888877777778899999998899988876  4454 569999999999998888888


Q ss_pred             ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       256 ~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      .|+.+|++++|.|+ +.++.++.+-  +|            +.. ...+.|..++||+||..+++|+..|.+.+=.+-
T Consensus       225 ~~ey~ITSva~npd-~~~~v~S~nt--~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~i  286 (737)
T KOG1524|consen  225 AEEYAITSVAFNPE-KDYLLWSYNT--AR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAI  286 (737)
T ss_pred             hhccceeeeeeccc-cceeeeeeee--ee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEeeee
Confidence            99999999999999 6666666553  45            222 144789999999999999999999987655443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=8e-14  Score=111.61  Aligned_cols=226  Identities=12%  Similarity=0.167  Sum_probs=160.0

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CcEEEEEcCC---------CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           87 TLLHISFNQDHGCFAAGTD-HGFRIYNCDP---------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .|.+-+++|.+++|++|.. +.|.++.+..         ++... ... .+|...+..+.|..+  ++++++.      |
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~i-v~e-qahdgpiy~~~f~d~--~Lls~gd------G   81 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKI-VPE-QAHDGPIYYLAFHDD--FLLSGGD------G   81 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcce-eec-cccCCCeeeeeeehh--heeeccC------c
Confidence            4666789999999999984 4498888742         12221 222 379999999999843  3444443      8


Q ss_pred             eEEEEeCCCCce------eEEee---c-----CCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcce
Q 014007          157 KVMIWDDHQSRC------IGELS---F-----RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGL  219 (432)
Q Consensus       157 ~v~iwd~~~~~~------~~~~~---~-----~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~  219 (432)
                      .|+-|.......      +.+..   +     -..|+++...|...-++   .|+.++.||+++|+..+++++|.+-+.+
T Consensus        82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~  161 (325)
T KOG0649|consen   82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS  161 (325)
T ss_pred             eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence            999998754321      11111   1     23578888887543333   3889999999999999999999999988


Q ss_pred             EEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeee---------cc-CCceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM---------AH-DSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~---------~~-~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~  288 (432)
                      +........++   +|++||++++||.++.+ +..+.         .| ..+|.+++-  +...|++|+.-.  +.+|.+
T Consensus       162 vv~R~~~~qil---sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~--lslwhL  234 (325)
T KOG0649|consen  162 VVGRNANGQIL---SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPK--LSLWHL  234 (325)
T ss_pred             eeecccCccee---ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCc--eeEEec
Confidence            87744333332   57799999999999844 33332         12 235666665  555787777654  899999


Q ss_pred             CCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       289 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      +..++...|.   -+..+..+.|..  ..+++++..+.|.-|.+..
T Consensus       235 rsse~t~vfp---ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  235 RSSESTCVFP---IPARVHLVDFVD--DCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             cCCCceEEEe---cccceeEeeeec--ceEEEeccccceeeeeecc
Confidence            9999999998   457889999954  5677888888898887754

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.68  E-value=1.7e-16  Score=132.16  Aligned_cols=218  Identities=14%  Similarity=0.154  Sum_probs=168.9

Q ss_pred             EEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEE
Q 014007          134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQ  209 (432)
Q Consensus       134 ~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~  209 (432)
                      -+.|+|+++++++..+      -.+.|-|..+-+..+.+..-..|.-+.|..|..++.    -++.|.+|++...+-...
T Consensus        13 ~c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence            3568999999999986      578888888777666666667788899998877665    288999999998888888


Q ss_pred             EeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCc--eEEEEE
Q 014007          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFN  287 (432)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~--~i~vwd  287 (432)
                      ++....++..++|+|+|++++..+  .-+-.|.+|.+.+.....+.-....+..++|+|||++.+.++....  .+.|..
T Consensus        87 Ideg~agls~~~WSPdgrhiL~ts--eF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTS--EFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeee--cceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            888888899999999999887654  5789999999999888777766677899999999999988876542  033333


Q ss_pred             CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC--CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD--KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK  365 (432)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (432)
                      .....+++.+..  ..-..+.+.|+|||..||+-..  +-.|+.|....                               
T Consensus       165 c~~W~ll~~f~~--dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~l-------------------------------  211 (447)
T KOG4497|consen  165 CKAWILLKEFKL--DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL-------------------------------  211 (447)
T ss_pred             hHHHHHHHhcCC--CcccccCceECCCCcEEEEecchhhheeeeeeecc-------------------------------
Confidence            345566666764  3356789999999999886542  33333333322                               


Q ss_pred             eeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                                      .+..++|+|.+++|++|+.|+.++|.+
T Consensus       212 ----------------G~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  212 ----------------GLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             ----------------ceeEEEeccccceEEeeccchhhhhhc
Confidence                            266799999999999999999998843

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=6.3e-15  Score=121.48  Aligned_cols=162  Identities=12%  Similarity=0.180  Sum_probs=113.4

Q ss_pred             eEEEecCCCcEEEEeecC-------CCCcEEEEEcc--CCceeeeec-cCCceeEEEEcCCCCEEEEE--cCCCceEEEE
Q 014007          219 LCAVSQGVGSLVLVCPGL-------QKGQVRVEHYA--SKRTKFIMA-HDSRIACFALTQDGQLLATS--STKGTLVRIF  286 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~-------~d~~i~i~d~~--~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~--~~dg~~i~vw  286 (432)
                      .+.|+++|+.+++.+...       .-+...+|.++  ......+.- ..++|.+++|+|+|+.|++.  ..++. |.+|
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~ly   88 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VTLY   88 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cEEE
Confidence            466777777766654311       11344555553  344444433 34579999999999987654  45677 9999


Q ss_pred             ECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC---CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007          287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (432)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                      |++ ++.+..+.    ...+..+.|+|+|++|++++.   .|.|.+||+++.+.+..                       
T Consensus        89 d~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-----------------------  140 (194)
T PF08662_consen   89 DVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-----------------------  140 (194)
T ss_pred             cCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-----------------------
Confidence            986 66666664    256789999999999999874   46799999997663221                       


Q ss_pred             cceeecceeeEEEEecCCCceEEEEccCCCEEEEEec------CCeEEEEEecCCCCCcceEeeecccC
Q 014007          364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM------DGSFYRCQFDPVNGGEMTQLEYNNFL  426 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw~~~~~~~~~~~~~~~~~~~  426 (432)
                                  .  ....++.++|+|||++|++++.      |+.++||++   .|+++...+..+|.
T Consensus       141 ------------~--~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~---~G~~l~~~~~~~l~  192 (194)
T PF08662_consen  141 ------------F--EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF---QGRLLYKKPFDELY  192 (194)
T ss_pred             ------------c--ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe---cCeEeEecchhhhh
Confidence                        1  1224789999999999998875      788999998   35666666665554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=2.7e-14  Score=134.27  Aligned_cols=217  Identities=11%  Similarity=0.028  Sum_probs=149.5

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (432)
                      |.++|.+.....   .+. .+...+....|+|++..++..+...  ....|++||+.+++......+.+.+...+|+|||
T Consensus       184 l~~~d~dg~~~~---~lt-~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        184 LAIMDQDGANVR---YLT-DGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             EEEECCCCCCcE---EEe-cCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence            777776544332   232 3666889999999998766543210  0168999999888764433467778889999999


Q ss_pred             cEEE-e---C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCce
Q 014007          188 IIVV-L---E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (432)
Q Consensus       188 ~~~~-~---d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i  261 (432)
                      ..++ +   +  ..|++||+.+++. ..+..+........|+|||+.+++++.......|+++|+.++..+.+..+...+
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~  336 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY  336 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence            8765 2   3  3588889887665 344444445567899999998877653222357888898887777766556667


Q ss_pred             eEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC------CeEEEEEe
Q 014007          262 ACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK------GTVHVFNL  332 (432)
Q Consensus       262 ~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~iwd~  332 (432)
                      ....|+|+|++|+..+.+   .. |.+||+..+. ...+..   ...+..+.|+|||++|+..+.+      ..|+++|+
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~-i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFS-IGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceE-EEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            788999999999876643   24 8889975544 344442   2346788999999998776542      25777777


Q ss_pred             cCCC
Q 014007          333 KVNS  336 (432)
Q Consensus       333 ~~~~  336 (432)
                      ..+.
T Consensus       412 ~g~~  415 (435)
T PRK05137        412 TGRN  415 (435)
T ss_pred             CCCc
Confidence            6544

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.67  E-value=2.8e-14  Score=128.93  Aligned_cols=177  Identities=11%  Similarity=0.135  Sum_probs=135.9

Q ss_pred             CeEEEEeCCCCc-----eeEEeecCCceEEEEEec-CccEEE---eCCeEEEEEcCCC-------eeeEEEeeccCCcce
Q 014007          156 NKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADL-------KLLHQIETIANPKGL  219 (432)
Q Consensus       156 ~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~  219 (432)
                      |.|-||++....     .+-.+.....|+.+.|.| |...++   -||.|++|.+..+       .+-..+..|...|..
T Consensus       603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~s  682 (1012)
T KOG1445|consen  603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITS  682 (1012)
T ss_pred             ceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEE
Confidence            899999987632     233444678899999998 444444   2899999998764       344567889999999


Q ss_pred             EEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce-EEEE
Q 014007          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEV  297 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~-~~~~  297 (432)
                      +.|+|-...++..  .+.|-+|++||+.+.. ...+.+|.+.|..++|||+|+.+|+.+.||+ |++|+-++++. +++-
T Consensus       683 lRfHPLAadvLa~--asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv~Eg  759 (1012)
T KOG1445|consen  683 LRFHPLAADVLAV--ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPVYEG  759 (1012)
T ss_pred             EEecchhhhHhhh--hhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCccccC
Confidence            9999977665433  3589999999999854 4568899999999999999999999999999 99999887643 3332


Q ss_pred             EeCCCcCceEEEEECCCCCEEEEEeCC----CeEEEEEecCCC
Q 014007          298 RRGADRAEIYSLAFSSNAQWLAVSSDK----GTVHVFNLKVNS  336 (432)
Q Consensus       298 ~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~  336 (432)
                      ++. -...--.+.|..||+++++.+.|    ..|.+||.++..
T Consensus       760 ~gp-vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  760 KGP-VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             CCC-ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence            221 22345678898999999888755    468888887654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.67  E-value=1e-14  Score=121.30  Aligned_cols=213  Identities=14%  Similarity=0.170  Sum_probs=157.6

Q ss_pred             cCCceEEEEEecCccEEEe---CCeEEEEEcCCC---eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007          174 FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (432)
Q Consensus       174 ~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  247 (432)
                      ...+|++.+|++|+..++.   ...|.||.....   +..+++..|...++.++|+|..+.+. .  ++.|..-++|...
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-t--cs~drnayVw~~~   85 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-T--CSHDRNAYVWTQP   85 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-E--ccCCCCccccccC
Confidence            5789999999999998884   568999987654   46788889999999999999998764 2  3589999999984


Q ss_pred             C----CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceE---EEEEeCCCcCceEEEEECCCCCEEEE
Q 014007          248 S----KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL---QEVRRGADRAEIYSLAFSSNAQWLAV  320 (432)
Q Consensus       248 ~----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~  320 (432)
                      .    ++...+..++...+++.|+|.++.+|+|+.-.. |.||-++...--   +.++. .+...|++++|+|++-+|++
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~-isVcy~E~ENdWWVsKhikk-PirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL-ISVCYYEQENDWWVSKHIKK-PIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccE-EEEEEEecccceehhhhhCC-ccccceeeeeccCCcceecc
Confidence            4    345567788999999999999999999999998 999876543221   11221 25678999999999999999


Q ss_pred             EeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec
Q 014007          321 SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM  400 (432)
Q Consensus       321 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  400 (432)
                      |+.|+..+||..--... .+.+.....     ++.+.         |+..  +..+....+.|..+.|+|+|+.|+-.+.
T Consensus       164 Gs~D~k~rVfSayIK~V-dekpap~pW-----gsk~P---------FG~l--m~E~~~~ggwvh~v~fs~sG~~lawv~H  226 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGV-DEKPAPTPW-----GSKMP---------FGQL--MSEASSSGGWVHGVLFSPSGNRLAWVGH  226 (361)
T ss_pred             cccCcceeEEEEeeecc-ccCCCCCCC-----ccCCc---------HHHH--HHhhccCCCceeeeEeCCCCCEeeEecC
Confidence            99999999998643221 111111000     00010         0000  1223344567999999999999999999


Q ss_pred             CCeEEEEE
Q 014007          401 DGSFYRCQ  408 (432)
Q Consensus       401 dg~v~iw~  408 (432)
                      |+.+.+=+
T Consensus       227 ds~v~~~d  234 (361)
T KOG1523|consen  227 DSTVSFVD  234 (361)
T ss_pred             CCceEEee
Confidence            99999843

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.67  E-value=9.3e-15  Score=120.45  Aligned_cols=148  Identities=10%  Similarity=0.196  Sum_probs=110.3

Q ss_pred             EEEEEecCccEEEe--C-----------CeEEEEEcCC-CeeeEEEeec-cCCcceEEEecCCCcEEEEeecCCCCcEEE
Q 014007          179 RSVKLRRDRIIVVL--E-----------QKIFVYNFAD-LKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (432)
Q Consensus       179 ~~~~~~~~~~~~~~--d-----------~~i~i~d~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i  243 (432)
                      ..+.|+++|.+|+.  +           +...+|.++. +.....+... .++|..++|+|+++.++++. |..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEE
Confidence            35677777776662  1           2344444422 2344444432 34699999999999887664 567789999


Q ss_pred             EEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC---CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEE
Q 014007          244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV  320 (432)
Q Consensus       244 ~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  320 (432)
                      ||++...+..+.  ...+..+.|+|+|++|++++.   .|. |.+||+++.+.+..+.   | ..++.++|+|||++|++
T Consensus        88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~---~-~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFE---H-SDATDVEWSPDGRYLAT  160 (194)
T ss_pred             EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccc---c-CcEEEEEEcCCCCEEEE
Confidence            999866665553  567789999999999999864   467 9999999888887776   3 35789999999999998


Q ss_pred             EeC------CCeEEEEEecC
Q 014007          321 SSD------KGTVHVFNLKV  334 (432)
Q Consensus       321 ~~~------dg~i~iwd~~~  334 (432)
                      +..      |+.++||+...
T Consensus       161 a~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEeccceeccccEEEEEecC
Confidence            863      78899999964

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=4.1e-14  Score=132.37  Aligned_cols=211  Identities=13%  Similarity=0.108  Sum_probs=135.4

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (432)
                      |.++|.+.....   .+. .+...+....|+|++..++..+...  ....|++||+.+++........+.+...+|+|||
T Consensus       178 L~~~D~dG~~~~---~l~-~~~~~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG  251 (427)
T PRK02889        178 LQISDADGQNAQ---SAL-SSPEPIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDG  251 (427)
T ss_pred             EEEECCCCCCce---Eec-cCCCCcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence            666665433222   222 3556788899999998776544220  0146999999988765443355667789999999


Q ss_pred             cEEEe----CCe--EEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEc--cCCceeeeeccCC
Q 014007          188 IIVVL----EQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--ASKRTKFIMAHDS  259 (432)
Q Consensus       188 ~~~~~----d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~--~~~~~~~~~~~~~  259 (432)
                      ..++.    ++.  |+++|+..+. ...+..+........|+|||+.+++++  ..++...+|.+  .++....+..+..
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s--~~~g~~~Iy~~~~~~g~~~~lt~~g~  328 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTS--DRGGAPQIYRMPASGGAAQRVTFTGS  328 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEe--cCCCCcEEEEEECCCCceEEEecCCC
Confidence            87762    554  5555655444 444444444455688999999887654  23455566654  4454444443334


Q ss_pred             ceeEEEEcCCCCEEEEEcCCC---ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC---eEEEEEe
Q 014007          260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG---TVHVFNL  332 (432)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~dg---~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~  332 (432)
                      .....+|+|||++|+..+.++   . |.+||+.+++... +...   .......|+|||++|+.++.++   .+++.++
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~-I~v~d~~~g~~~~-lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFK-LYVQDLATGQVTA-LTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEE-EEEEECCCCCeEE-ccCC---CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            455688999999998776553   5 9999998887543 3321   2346789999999988877543   2444455

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=5.9e-14  Score=118.64  Aligned_cols=286  Identities=17%  Similarity=0.172  Sum_probs=182.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCCeE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKV  158 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v  158 (432)
                      ..-..-.+..++|++.-..+|++. |+.|++|+-.. +..  ..++......+.+++|.|.+. .++.+..      +-|
T Consensus        94 t~ws~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~p--t~Lks~sQrnvtclawRPlsaselavgCr------~gI  164 (445)
T KOG2139|consen   94 TLWSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCP--TKLKSVSQRNVTCLAWRPLSASELAVGCR------AGI  164 (445)
T ss_pred             hhhhhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCC--ceecchhhcceeEEEeccCCcceeeeeec------cee
Confidence            333455788899999666677776 77799999655 322  334434677899999988643 4444444      689


Q ss_pred             EEEeCCCC----c--------eeEEee--cCCceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeeccCCcceE
Q 014007          159 MIWDDHQS----R--------CIGELS--FRSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLC  220 (432)
Q Consensus       159 ~iwd~~~~----~--------~~~~~~--~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~  220 (432)
                      .+|.....    .        ....++  ...+|+++.|++||..++.    |..|.|||..++..+.......+.+..+
T Consensus       165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slL  244 (445)
T KOG2139|consen  165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLL  244 (445)
T ss_pred             EEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeE
Confidence            99976421    1        122233  3468999999999998883    7899999999987765554455677789


Q ss_pred             EEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC----Cc---
Q 014007          221 AVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----GT---  292 (432)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~----~~---  292 (432)
                      .|+||++.++.++   -|+..++|+... ........-.+.|....|+|+|++|+.......  ++|.+.-    ..   
T Consensus       245 kwSPdgd~lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~  319 (445)
T KOG2139|consen  245 KWSPDGDVLFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLR  319 (445)
T ss_pred             EEcCCCCEEEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccC
Confidence            9999999876543   789999996544 222233334558999999999998776554433  4444321    10   


Q ss_pred             --------eEEEEE-----eC--CCcCceEEEEECCCCCEEEEEeCCCe--------EEEEEecCCCCCCCCCCCCCCCC
Q 014007          293 --------LLQEVR-----RG--ADRAEIYSLAFSSNAQWLAVSSDKGT--------VHVFNLKVNSGSARSEPRSTSDP  349 (432)
Q Consensus       293 --------~~~~~~-----~~--~~~~~i~~~~~s~~~~~l~~~~~dg~--------i~iwd~~~~~~~~~~~~~~~~~~  349 (432)
                              ++..+.     .+  .-.+++.+++|.|.|.+||+.-..+.        |.+||.+..-..           
T Consensus       320 ~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v-----------  388 (445)
T KOG2139|consen  320 PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV-----------  388 (445)
T ss_pred             cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce-----------
Confidence                    111111     00  01257899999999999998764432        455555443210           


Q ss_pred             CCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc---CCCEEEEEecCCeEEEEEecCC
Q 014007          350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH---QKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                             .+.-.             -+.+. ..-.-+.|+|   ++.+|.++=..|.+.-|.+..+
T Consensus       389 -------els~c-------------g~i~g-e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f~  433 (445)
T KOG2139|consen  389 -------ELSYC-------------GMIGG-EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTFQ  433 (445)
T ss_pred             -------EEEec-------------ccccC-CCCceEEeeecccCCcEEEEEeccCceEeeeeEEE
Confidence                   00000             00001 1133456665   6677888888899988887553

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.66  E-value=1.6e-11  Score=111.63  Aligned_cols=274  Identities=15%  Similarity=0.127  Sum_probs=173.0

Q ss_pred             CcEEEEEc--CCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEee-cCCce
Q 014007          106 HGFRIYNC--DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEV  178 (432)
Q Consensus       106 ~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~~-~~~~v  178 (432)
                      ++|.+|++  ++++........  .......+++++++..|.+..... ...+.|..|++...    +.+.+.. .....
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p   89 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP   89 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred             CcEEEEEEcCCCCCceEeeeec--CCCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence            46999988  444444333332  333344566677666555544310 01289999988764    2333444 45666


Q ss_pred             EEEEEecCccEEEe----CCeEEEEEcCC-CeeeEE---Ee--e--------ccCCcceEEEecCCCcEEEEeecCCCCc
Q 014007          179 RSVKLRRDRIIVVL----EQKIFVYNFAD-LKLLHQ---IE--T--------IANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (432)
Q Consensus       179 ~~~~~~~~~~~~~~----d~~i~i~d~~~-~~~~~~---~~--~--------~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (432)
                      ..++++|++.+++.    +|.|.++++.. +.....   +.  +        .......+.++|+++.+++..-|  ...
T Consensus        90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~  167 (345)
T PF10282_consen   90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADR  167 (345)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTE
T ss_pred             EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCE
Confidence            78999999998873    88999999987 443332   21  0        11223478999999988766533  468


Q ss_pred             EEEEEccCCc--eee---e-eccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECC--CCc--eEEEEEeC---C-CcCc
Q 014007          241 VRVEHYASKR--TKF---I-MAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTL--DGT--LLQEVRRG---A-DRAE  305 (432)
Q Consensus       241 i~i~d~~~~~--~~~---~-~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~--~~~--~~~~~~~~---~-~~~~  305 (432)
                      |.+|+++...  +..   + .........++|+|+++++++..+ ++. |.++++.  +++  .+..+...   . ....
T Consensus       168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT-VSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc-EEEEeecccCCceeEEEEeeeccccccccCC
Confidence            9999997743  322   2 244566889999999998876655 555 9999988  443  23333321   0 1125


Q ss_pred             eEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007          306 IYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  384 (432)
                      ...|.++|||++|+++. ..++|.+|++......                 +.              .+..+.......+
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~-----------------l~--------------~~~~~~~~G~~Pr  295 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT-----------------LT--------------LVQTVPTGGKFPR  295 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT-----------------EE--------------EEEEEEESSSSEE
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc-----------------eE--------------EEEEEeCCCCCcc
Confidence            78999999999988765 6788999999543200                 00              0222333334478


Q ss_pred             EEEEccCCCEEEEEec-CCeEEEEEecCCCCCc
Q 014007          385 IVAFGHQKNTVVILGM-DGSFYRCQFDPVNGGE  416 (432)
Q Consensus       385 ~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~  416 (432)
                      .++++|+|++|++++. ++.|.+|++|.++|..
T Consensus       296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l  328 (345)
T PF10282_consen  296 HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL  328 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence            8999999999998885 6789999999887653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.65  E-value=1.1e-14  Score=117.94  Aligned_cols=234  Identities=12%  Similarity=0.069  Sum_probs=154.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-----e----EEEecCCCCCCC
Q 014007           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-----I----LALVGGGPDPQY  153 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~----~~~~s~~~d~~~  153 (432)
                      .|...|+.+.--|++.++.-|-|..+.+|++........      |...+.++-|.+-     .    ..++.-++.   
T Consensus        54 ~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg---  124 (323)
T KOG0322|consen   54 FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISI------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG---  124 (323)
T ss_pred             hccceeeceeecCCcchhhcCCCceEEEEEccCcceEEE------eeeeccccccccceeccCCCcchhheecCCcc---
Confidence            678889999999987766666677799999976544432      3333444444321     1    111111110   


Q ss_pred             CCCeEEEEeCCCCceeEEee-----cCCceEEEEEec-CccEEE--e---CCeEEEEEcCCCee----------eEEEee
Q 014007          154 PLNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRR-DRIIVV--L---EQKIFVYNFADLKL----------LHQIET  212 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~--~---d~~i~i~d~~~~~~----------~~~~~~  212 (432)
                       ...+.+-|......++...     ..+.+.+..+.. ++.++.  .   +|.+.+||+.++..          ...+..
T Consensus       125 -sde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as  203 (323)
T KOG0322|consen  125 -SDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS  203 (323)
T ss_pred             -cchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh
Confidence             0112222222112222221     245566666443 333333  2   89999999998733          333345


Q ss_pred             ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ce---eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd  287 (432)
                      |..++..+.+.+.-+.-+   .|+.+..+..|.++-.  .+   .........|..+.+.||++.+|+++.|+. ||||.
T Consensus       204 h~qpvlsldyas~~~rGi---sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVys  279 (323)
T KOG0322|consen  204 HKQPVLSLDYASSCDRGI---SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYS  279 (323)
T ss_pred             ccCcceeeeechhhcCCc---CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEE
Confidence            677888888876544332   3456778888887652  21   223334567899999999999999999999 99999


Q ss_pred             CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEe
Q 014007          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (432)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  332 (432)
                      .++.+.+..++-  |...|++++|+|+...+|+++.|++|.+|++
T Consensus       280 wrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  280 WRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999986  6699999999999999999999999999986

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=7.7e-13  Score=124.65  Aligned_cols=214  Identities=15%  Similarity=0.069  Sum_probs=144.1

Q ss_pred             eEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe----C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      .|.++|...+.......+...+....|+|||..++.    +  ..|++||+.+++... +...........|+|+|+.++
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence            588888765554444457788999999999988763    2  369999998876533 323333445689999999887


Q ss_pred             EEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      +......+..|+++|+.++....+..+........|+|||+.|+..+..   .. |+++|+.+++.......   .....
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~-iy~~d~~~g~~~~lt~~---~~~~~  334 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQ-IYKVNVNGGRAERVTFV---GNYNA  334 (430)
T ss_pred             EEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeecC---CCCcc
Confidence            6553323347888899988777777666667788999999988766542   24 78888888775433221   12345


Q ss_pred             EEEECCCCCEEEEEeCC-C--eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007          308 SLAFSSNAQWLAVSSDK-G--TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  384 (432)
                      ...|+|||++|+..+.+ +  .|.+||+.+++..                                    .+.. .....
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~------------------------------------~lt~-~~~~~  377 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR------------------------------------ILTD-TSLDE  377 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCCCCEE------------------------------------EccC-CCCCC
Confidence            67899999999877643 3  5788888876511                                    1111 11122


Q ss_pred             EEEEccCCCEEEEEecC-CeEEEEEecCC
Q 014007          385 IVAFGHQKNTVVILGMD-GSFYRCQFDPV  412 (432)
Q Consensus       385 ~~~~s~~~~~l~~~~~d-g~v~iw~~~~~  412 (432)
                      ...|+|||+.|+..+.+ |.-.+|-++..
T Consensus       378 ~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        378 SPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEEECC
Confidence            46899999998876653 45455555553

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.63  E-value=1.3e-15  Score=132.53  Aligned_cols=197  Identities=15%  Similarity=0.211  Sum_probs=167.5

Q ss_pred             ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe--CCeEEEEEcCCCee
Q 014007          129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKL  206 (432)
Q Consensus       129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~  206 (432)
                      ...-..+.|+.+|..++-++..     |.|..+|+.+++...++.....|.++.|-.+..+++.  ...++||| ..|..
T Consensus       129 eFGPY~~~ytrnGrhlllgGrK-----GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtE  202 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRK-----GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTE  202 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCc-----cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcE
Confidence            3445678899999999999988     9999999999999999999999999999999888884  78999999 67888


Q ss_pred             eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (432)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v  285 (432)
                      ++.++.+. .+..+.|-|.  ++++++ ++..|.+..-|+..+.+ ..+..-.+.+..+.-+|-...+-+|..+|+ |.+
T Consensus       203 lHClk~~~-~v~rLeFLPy--HfLL~~-~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSl  277 (545)
T KOG1272|consen  203 LHCLKRHI-RVARLEFLPY--HFLLVA-ASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSL  277 (545)
T ss_pred             EeehhhcC-chhhhcccch--hheeee-cccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEe
Confidence            88887543 4667778776  344554 55899999999998654 456667788889999999889999999999 999


Q ss_pred             EECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      |.-...+++..+..  |.++|.++++.++|+|+++.+.|..++|||+++...+
T Consensus       278 WSP~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  278 WSPNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             cCCCCcchHHHHHh--cCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence            99888888777764  7799999999999999999999999999999987744

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=1.6e-13  Score=114.20  Aligned_cols=234  Identities=13%  Similarity=0.177  Sum_probs=157.6

Q ss_pred             eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-e---------CCeEEEE
Q 014007          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L---------EQKIFVY  199 (432)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~---------d~~i~i~  199 (432)
                      ....++|+.|...++.+.+      .-.+||+.+--+...... +.+.+.-+..--..++++ .         -+.|.||
T Consensus         7 ~~lsvs~NQD~ScFava~~------~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIW   80 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATD------TGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIW   80 (346)
T ss_pred             ceeEEEEccCCceEEEEec------CceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEE
Confidence            3455889988888888876      478999876533322222 222211111111222333 1         3579999


Q ss_pred             EcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--Cceeeeecc--CCceeEEEEcCCCCEEEE
Q 014007          200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAH--DSRIACFALTQDGQLLAT  275 (432)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~--~~~i~~~~~sp~~~~l~~  275 (432)
                      |=...+++.++. ...+|..+.++.+  .++++    ..+.|.||....  +.+..+...  ...+.+++-+.+..+||.
T Consensus        81 DD~k~~~i~el~-f~~~I~~V~l~r~--riVvv----l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf  153 (346)
T KOG2111|consen   81 DDLKERCIIELS-FNSEIKAVKLRRD--RIVVV----LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF  153 (346)
T ss_pred             ecccCcEEEEEE-eccceeeEEEcCC--eEEEE----ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence            966677777775 4667888888776  44443    478999999885  334444332  333444433334556665


Q ss_pred             -EcCCCceEEEEECCCCce--EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe-EEEEEecCCCCCCCCCCCCCCCCCC
Q 014007          276 -SSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT-VHVFNLKVNSGSARSEPRSTSDPTL  351 (432)
Q Consensus       276 -~~~dg~~i~vwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~  351 (432)
                       |-.-|. |+|-|+...+.  ...+.  +|...|.+++.+.+|.++|+++..|+ |||||..+++.+.++          
T Consensus       154 Pg~k~Gq-vQi~dL~~~~~~~p~~I~--AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~----------  220 (346)
T KOG2111|consen  154 PGFKTGQ-VQIVDLASTKPNAPSIIN--AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL----------  220 (346)
T ss_pred             CCCccce-EEEEEhhhcCcCCceEEE--cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee----------
Confidence             445577 99999987665  34555  37899999999999999999999987 799999999854321          


Q ss_pred             CCCCceeEeecccceeecceeeEEEEe-cCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCC
Q 014007          352 PTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG  414 (432)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~  414 (432)
                                              -++ ....|.+++|||++.+||+++..|+|.||.+.....
T Consensus       221 ------------------------RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  221 ------------------------RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN  260 (346)
T ss_pred             ------------------------ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence                                    011 123599999999999999999999999999976543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.63  E-value=3.5e-14  Score=132.41  Aligned_cols=245  Identities=16%  Similarity=0.147  Sum_probs=172.8

Q ss_pred             cCCCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEcCCCeeE---EEeecccCcceeEEEEeeeCCeEE--EecCCCCCC
Q 014007           80 TSSSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILA--LVGGGPDPQ  152 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~-~l~~~~~~~-i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~--~~s~~~d~~  152 (432)
                      ........|+|+.|+|... +|+.|..+| |.+||+......   ........|...++.+.|..+-.-  +++++.|  
T Consensus       237 ~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD--  314 (555)
T KOG1587|consen  237 LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD--  314 (555)
T ss_pred             EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC--
Confidence            3344567899999999655 566666555 999999755542   111222468889999998665433  7777778  


Q ss_pred             CCCCeEEEEeCCCCce-eE-----Ee-------ecCCceEEEEEecC--ccEEE-e-CCeEEEEEcCC---C-----eee
Q 014007          153 YPLNKVMIWDDHQSRC-IG-----EL-------SFRSEVRSVKLRRD--RIIVV-L-EQKIFVYNFAD---L-----KLL  207 (432)
Q Consensus       153 ~~~~~v~iwd~~~~~~-~~-----~~-------~~~~~v~~~~~~~~--~~~~~-~-d~~i~i~d~~~---~-----~~~  207 (432)
                         |.|..|+++.-.. ..     ..       .....+++++|.+.  ..+++ + +|.|..-+-..   .     +..
T Consensus       315 ---G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~  391 (555)
T KOG1587|consen  315 ---GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH  391 (555)
T ss_pred             ---CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence               9999998764322 11     11       12345788888774  33444 3 67776633222   1     123


Q ss_pred             EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc-C-CceeeeeccCCceeEEEEcCCC-CEEEEEcCCCceEE
Q 014007          208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-S-KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVR  284 (432)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~-~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~  284 (432)
                      ..+..|.+++..+.++|-+..+++.+ |  |..++||... . ..+..+..+...+++++|||.. ..++++..||. |.
T Consensus       392 ~~~~~h~g~v~~v~~nPF~~k~fls~-g--DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~  467 (555)
T KOG1587|consen  392 STFITHIGPVYAVSRNPFYPKNFLSV-G--DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LD  467 (555)
T ss_pred             ccccccCcceEeeecCCCccceeeee-c--cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-ee
Confidence            34556788999999999988887665 3  8999999876 2 5566677778889999999954 57788888999 99


Q ss_pred             EEECCCCc--eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          285 IFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       285 vwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      +||+....  ++.....  +....+.+.|+++|+.|++|...|++++|++...
T Consensus       468 iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  468 IWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             hhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            99997543  3333332  3456788899999999999999999999999643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=1.1e-13  Score=133.91  Aligned_cols=320  Identities=13%  Similarity=0.085  Sum_probs=193.5

Q ss_pred             ccCCCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEcCCCe---eEEE--eecccCcceeEEEEeeeCCeEEEecCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFR---EIFR--RDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~-i~iw~~~~~~---~~~~--~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  151 (432)
                      ..+..|...|..++.+++. .+|++|+++| |++|++....   ....  .++. ..+..+..+...+++..+|.++.| 
T Consensus      1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~~~Av~t~D- 1119 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGDQFAVSTKD- 1119 (1431)
T ss_pred             ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCCeEEEEcCC-
Confidence            4566788888888887755 8999999666 9999974221   1111  2221 245667777777788888888888 


Q ss_pred             CCCCCeEEEEeCCCC--c-----eeEEee--cCCceEEE-EEecC-cc-EEE--e-CCeEEEEEcCCCeeeEEEe--ecc
Q 014007          152 QYPLNKVMIWDDHQS--R-----CIGELS--FRSEVRSV-KLRRD-RI-IVV--L-EQKIFVYNFADLKLLHQIE--TIA  214 (432)
Q Consensus       152 ~~~~~~v~iwd~~~~--~-----~~~~~~--~~~~v~~~-~~~~~-~~-~~~--~-d~~i~i~d~~~~~~~~~~~--~~~  214 (432)
                          |.|++.++...  +     ..+...  ..+.+.++ ++... +. .++  + .+.|..||++.......++  ...
T Consensus      1120 ----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1120 ----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             ----CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence                99999998762  1     111112  33444443 33322 22 222  2 6789999998865554443  334


Q ss_pred             CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee--eeccCCceeEEEEcCC---CCEEEEEc--CCCceEEEEE
Q 014007          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF--IMAHDSRIACFALTQD---GQLLATSS--TKGTLVRIFN  287 (432)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~~i~~~~~sp~---~~~l~~~~--~dg~~i~vwd  287 (432)
                      +.++.++.+|.+..+++   |+..|.+.+||++-+....  -.++..+|..+..+|-   ....++++  ..+. |.+|+
T Consensus      1196 G~vTSi~idp~~~Wlvi---Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~wn 1271 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVI---GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VSTWN 1271 (1431)
T ss_pred             cceeEEEecCCceEEEE---ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eeeee
Confidence            67889999999986554   4477999999999865432  2345578888887773   24454444  4566 99999


Q ss_pred             CCCCceEEEEEeC-----------------CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC-CCCCCCCCCC
Q 014007          288 TLDGTLLQEVRRG-----------------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA-RSEPRSTSDP  349 (432)
Q Consensus       288 ~~~~~~~~~~~~~-----------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~  349 (432)
                      +.+|.+...+...                 .+.-......+..-+.++.+|+.|..|+.||....+... ...+......
T Consensus      1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~ 1351 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYS 1351 (1431)
T ss_pred             cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccc
Confidence            9999887777643                 011112223343445688899999999999998876441 1111111111


Q ss_pred             CC-CCCCceeEeec------cc--ce---eecceeeE--------EEEecCCCceEEEEccC-CCEEEEEecCCeEEEEE
Q 014007          350 TL-PTSSLSFIKGV------LP--KY---FSSEWSVA--------QFRLVEGSPYIVAFGHQ-KNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       350 ~~-~~~~~~~~~~~------~~--~~---~~~~~~~~--------~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~  408 (432)
                      .. .........+.      ++  ..   ....+...        .-..|.+.|+.+++-.. ..+|++++.||.|.||.
T Consensus      1352 ~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1352 TNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             ccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence            00 00001111000      00  00   00000011        12346678999988764 45888999999999994

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=8.9e-15  Score=126.03  Aligned_cols=197  Identities=15%  Similarity=0.098  Sum_probs=144.4

Q ss_pred             EEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eee
Q 014007          179 RSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI  254 (432)
Q Consensus       179 ~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~  254 (432)
                      ..++|+.+|..+++   ||++|+|+......+.....|...|..+.|+|||+.+  ++.| .| ..+||+.+++.. ...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~l--asig-~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFL--ASIG-AD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEE--EEec-CC-ceEEEEeccCchhhhc
Confidence            78999999888884   9999999988877777777888999999999999854  4434 45 899999998622 222


Q ss_pred             --eccCCceeEEEEcCCC---C-EEEEEcCCCceEEEEECCCCce---EEEEEeCCCcCceEEEEECCCCCEEEEEeCCC
Q 014007          255 --MAHDSRIACFALTQDG---Q-LLATSSTKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (432)
Q Consensus       255 --~~~~~~i~~~~~sp~~---~-~l~~~~~dg~~i~vwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  325 (432)
                        ...+.....+.|+.|+   . +|++.-.++..|+.||+...+.   ++..+.-.....|.+++.++||+++|.|+.||
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG  303 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence              2234456678888776   2 3333333332277776643322   11111111225799999999999999999999


Q ss_pred             eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEE
Q 014007          326 TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFY  405 (432)
Q Consensus       326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~  405 (432)
                      .|.|++..+.+.+.                                  ..-+.|...|+.+.|+||.+.+++.+.|....
T Consensus       304 sVai~~~~~lq~~~----------------------------------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~  349 (398)
T KOG0771|consen  304 SVAIYDAKSLQRLQ----------------------------------YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA  349 (398)
T ss_pred             cEEEEEeceeeeeE----------------------------------eehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence            99999999877431                                  12346888999999999999999999999999


Q ss_pred             EEEecCCC
Q 014007          406 RCQFDPVN  413 (432)
Q Consensus       406 iw~~~~~~  413 (432)
                      +..+....
T Consensus       350 v~~l~vd~  357 (398)
T KOG0771|consen  350 VTKLAVDK  357 (398)
T ss_pred             EEEEeecc
Confidence            98886643

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=5.3e-13  Score=112.95  Aligned_cols=247  Identities=15%  Similarity=0.159  Sum_probs=167.6

Q ss_pred             cCCCCCCCeEEEEEcCCC-CEEEEEcCCcEEEEEcCCCeeE----------EEeecccCcceeEEEEeeeCCeEEEecCC
Q 014007           80 TSSSPPPTLLHISFNQDH-GCFAAGTDHGFRIYNCDPFREI----------FRRDFERGGGIGVVEMLFRCNILALVGGG  148 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~-~~l~~~~~~~i~iw~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  148 (432)
                      ........|+|++|-|.+ +-|++|+..+|.||..+.....          ....+++.....|..|.|.+++..+++++
T Consensus       135 Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS  214 (445)
T KOG2139|consen  135 LKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTAS  214 (445)
T ss_pred             ecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecc
Confidence            334456789999999965 5799999999999987532111          11122233447899999999999999887


Q ss_pred             CCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEec
Q 014007          149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (432)
Q Consensus       149 ~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (432)
                      .+    +..|.|||..++..+.... ..+.+.-+.|+||+.++..   |+..++|+..............+.+...+|+|
T Consensus       215 ~g----sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp  290 (445)
T KOG2139|consen  215 FG----SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP  290 (445)
T ss_pred             cC----cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC
Confidence            54    4889999999998776664 6788999999999988773   99999996554333233333455788899999


Q ss_pred             CCCcEEEEeecCCCCcEEEEEccC--C-----------ceee--------eec----cCCceeEEEEcCCCCEEEEEcCC
Q 014007          225 GVGSLVLVCPGLQKGQVRVEHYAS--K-----------RTKF--------IMA----HDSRIACFALTQDGQLLATSSTK  279 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i~d~~~--~-----------~~~~--------~~~----~~~~i~~~~~sp~~~~l~~~~~d  279 (432)
                      +|+.+++++.|    .-++|.+..  +           ....        +..    --+.+.+++|.|.|.+||+.-..
T Consensus       291 cGsfLLf~~sg----sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  291 CGSFLLFACSG----SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             CCCEEEEEEcC----CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence            99999888744    233443321  1           0000        011    14578999999999999987654


Q ss_pred             Cc-------eEEEEECCCCceEEEEEeCC-CcCceEEEEECC---CCCEEEEEeCCCeEEEEEecC
Q 014007          280 GT-------LVRIFNTLDGTLLQEVRRGA-DRAEIYSLAFSS---NAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       280 g~-------~i~vwd~~~~~~~~~~~~~~-~~~~i~~~~~s~---~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      +.       .|.+||.+..-.+.....+. ......-++|+|   +|.+|..+-..|.+.-|++.-
T Consensus       367 ~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f  432 (445)
T KOG2139|consen  367 QSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF  432 (445)
T ss_pred             CchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence            32       16778876554433321110 112245566665   677888887889998888754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.61  E-value=1.3e-12  Score=115.36  Aligned_cols=329  Identities=12%  Similarity=0.071  Sum_probs=208.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC----------C
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ----------Y  153 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~----------~  153 (432)
                      ..-++..++|||.|++|++....+|.+|.-......  ..+   ....|..+.|+|++.+|++-...|.          -
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l--~~~---~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~  105 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL--VRF---RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT  105 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhhe--eee---ecCCceecccCcccceeeeeccCCccChhhccCCcc
Confidence            556788899999999999999999999997766533  333   3457888999999999999887654          1


Q ss_pred             CCCeEEEEeCCCCceeEEee-cCCc--eE-EEEEecCccEEE--eCCeEEEEEcCCCee-eEEEeec-cCCcceEEEecC
Q 014007          154 PLNKVMIWDDHQSRCIGELS-FRSE--VR-SVKLRRDRIIVV--LEQKIFVYNFADLKL-LHQIETI-ANPKGLCAVSQG  225 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~-~~~~--v~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~-~~~~~~~-~~~~~~~~~~~~  225 (432)
                      ..+.+.+||+.+|..+..+. -..+  .+ -+.|+-+..+++  ....++|+++ +... ...+... ...+....++|.
T Consensus       106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~  184 (561)
T COG5354         106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE  184 (561)
T ss_pred             ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence            23469999999999999888 3333  44 678999998888  5889999997 3322 1122111 245667788887


Q ss_pred             CCcEEEEe----ecCCCCcEEEEEccCCceeee-eccCCceeEEEEcCCCCEEEEEcC-----------CCceEEEEECC
Q 014007          226 VGSLVLVC----PGLQKGQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSST-----------KGTLVRIFNTL  289 (432)
Q Consensus       226 ~~~~~~~~----~g~~d~~i~i~d~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~-----------dg~~i~vwd~~  289 (432)
                      +++-.+++    .++..+.+++|.+..+..... .-....=..+.|.+.|++|+.--.           ..+ ++|+++.
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~  263 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRIT  263 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeec
Confidence            66544332    134678999999876433221 111222346788888888764211           234 8888887


Q ss_pred             CCceEEEEEeCCCcCceEEEEECCCCCEEEEEe--CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc---
Q 014007          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP---  364 (432)
Q Consensus       290 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  364 (432)
                      ...+.....   ..++|...+|.|.++.+++.+  .+-.+.++|++..-.-...+...+...+++.....++.++-.   
T Consensus       264 e~~i~V~~~---~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~g  340 (561)
T COG5354         264 ERSIPVEKD---LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQG  340 (561)
T ss_pred             ccccceecc---ccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCcccc
Confidence            444433322   458999999999998877654  788899999887521111112222222333333333322110   


Q ss_pred             --ceeecceeeE---EEEecCCCceEEEEccCCCEEEEEec------CCeEEEEEecCCCCCcceEeeecc
Q 014007          365 --KYFSSEWSVA---QFRLVEGSPYIVAFGHQKNTVVILGM------DGSFYRCQFDPVNGGEMTQLEYNN  424 (432)
Q Consensus       365 --~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw~~~~~~~~~~~~~~~~~  424 (432)
                        ..+...-.+.   .+.+.  ..+-+.|+||++++.+...      |..+.||++.-..--++..+.|..
T Consensus       341 ni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p  409 (561)
T COG5354         341 NIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDP  409 (561)
T ss_pred             ceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhhhhhhccccC
Confidence              0111111111   22222  3455789999999887644      788999998665544555555544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.6e-12  Score=121.98  Aligned_cols=177  Identities=16%  Similarity=0.105  Sum_probs=118.8

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (432)
                      ..|.++|...............+....|+|||..++.    ++  .|++||+.+++... +...........|+|||+.+
T Consensus       198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            3677888655444333347788999999999988773    22  69999998876432 32223334568999999988


Q ss_pred             EEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC-CCc-eEEEEECCCCceEEEEEeCCCcCceE
Q 014007          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGT-LVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~-~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      +++........|+++|+.++....+..+.......+|+|||+.|+..+. ++. .|+++|+.+++.......   .....
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~---g~~~~  353 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE---GEQNL  353 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC---CCCCc
Confidence            7654222223578888888877777767667788999999998876654 222 177778877765433221   12234


Q ss_pred             EEEECCCCCEEEEEeC-CC--eEEEEEecCCC
Q 014007          308 SLAFSSNAQWLAVSSD-KG--TVHVFNLKVNS  336 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~  336 (432)
                      ..+|+|||++|+..+. ++  .|.++|+.+++
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~  385 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGA  385 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence            5799999999887654 34  45556766654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.9e-14  Score=126.74  Aligned_cols=209  Identities=14%  Similarity=0.191  Sum_probs=157.2

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecC--ccEEEe---CC
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRD--RIIVVL---EQ  194 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~--~~~~~~---d~  194 (432)
                      ..+. +|.+.|.++.|+.+|.+|++|++|     -.+.|||.-..+.+..+.  |...|.++.|-|.  ..++++   |.
T Consensus        44 ~eL~-GH~GCVN~LeWn~dG~lL~SGSDD-----~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   44 AELT-GHTGCVNCLEWNADGELLASGSDD-----TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hhhc-cccceecceeecCCCCEEeecCCc-----ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence            5565 899999999999999999999999     999999998888888887  9999999999983  445553   88


Q ss_pred             eEEEEEcCCC----------eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-----------e
Q 014007          195 KIFVYNFADL----------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-----------F  253 (432)
Q Consensus       195 ~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-----------~  253 (432)
                      .|+++|+...          .....+..|...+..++..|++.+.+..+  ++||.++-+|++.....           .
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa--sEDGtirQyDiREph~c~p~~~~~~~l~n  195 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA--SEDGTIRQYDIREPHVCNPDEDCPSILVN  195 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe--cCCcceeeecccCCccCCccccccHHHHH
Confidence            9999999852          23444566777888899999997776554  58999999999873211           1


Q ss_pred             eeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCC--------C----------ceEEEEEeCCC--c--------C
Q 014007          254 IMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLD--------G----------TLLQEVRRGAD--R--------A  304 (432)
Q Consensus       254 ~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~--------~----------~~~~~~~~~~~--~--------~  304 (432)
                      +...--...|+.++| +..+|++|+.|-- .++||.+.        +          .+++.|..+..  .        .
T Consensus       196 y~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~  274 (758)
T KOG1310|consen  196 YNPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT  274 (758)
T ss_pred             hchhhheeeeeeecCCCCceEEecCCCch-hhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence            111223567899999 5578999999998 99999431        1          13444432211  0        1


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      .++-++|+|+|.-|+..-....|+++|+..++..-
T Consensus       275 ~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  275 CCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             eeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence            25678999999887777666789999999887543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.59  E-value=3.5e-11  Score=109.43  Aligned_cols=241  Identities=20%  Similarity=0.210  Sum_probs=158.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC----C-cEEEEEcCCC--eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           85 PPTLLHISFNQDHGCFAAGTD----H-GFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~----~-~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      ......++++|++++|.+...    . +|..|.++..  +........ ........++.++++.+++.+..    ..|.
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany----~~g~  110 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANY----GGGS  110 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEET----TTTE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEc----cCCe
Confidence            345567899999999888764    2 3888988654  444333333 23445567888888877776542    1299


Q ss_pred             EEEEeCCC-CceeE---Eeec-----------CCceEEEEEecCccEEEe----CCeEEEEEcCCCe--ee--EEEee-c
Q 014007          158 VMIWDDHQ-SRCIG---ELSF-----------RSEVRSVKLRRDRIIVVL----EQKIFVYNFADLK--LL--HQIET-I  213 (432)
Q Consensus       158 v~iwd~~~-~~~~~---~~~~-----------~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~--~~--~~~~~-~  213 (432)
                      |.++++.. |....   .+.+           .....++.++|++++++.    .+.|++|++....  ..  ..+.. .
T Consensus       111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~  190 (345)
T PF10282_consen  111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP  190 (345)
T ss_dssp             EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred             EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence            99999987 43322   2211           345789999999998874    5689999997654  21  22222 2


Q ss_pred             cCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc--CCceee---eec------cCCceeEEEEcCCCCEEEEEcCCCce
Q 014007          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKF---IMA------HDSRIACFALTQDGQLLATSSTKGTL  282 (432)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~~---~~~------~~~~i~~~~~sp~~~~l~~~~~dg~~  282 (432)
                      ...-+.+.|+|+++.++++.  ..++.|.++++.  .+....   +..      .......|+++|||++|+++......
T Consensus       191 G~GPRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s  268 (345)
T PF10282_consen  191 GSGPRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS  268 (345)
T ss_dssp             TSSEEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred             CCCCcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence            23345799999999988875  478999999998  332222   111      12257889999999998887654433


Q ss_pred             EEEEECC--CCce--EEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007          283 VRIFNTL--DGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (432)
Q Consensus       283 i~vwd~~--~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~  334 (432)
                      |.+|++.  ++++  +..+...  ......++++|+|++|+++. .++.|.+|+++.
T Consensus       269 I~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  269 ISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            9999983  3433  3344432  24589999999999999887 678999998864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=1.8e-13  Score=130.49  Aligned_cols=243  Identities=17%  Similarity=0.276  Sum_probs=164.0

Q ss_pred             CCCCCCeEEEEEcC--CCCEEEEEcCCc-EEEEEcCCC---eeEEEeec---c----cCcceeEEEEeeeCC-eEEEecC
Q 014007           82 SSPPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPF---REIFRRDF---E----RGGGIGVVEMLFRCN-ILALVGG  147 (432)
Q Consensus        82 ~~~~~~v~~~~~s~--~~~~l~~~~~~~-i~iw~~~~~---~~~~~~~~---~----~~~~~~v~~~~~~~~-~~~~~s~  147 (432)
                      ......|+.+.+-.  |..+|.+|+++| |+||+--..   +.......   .    +..+.. .-+.|... |..+++|
T Consensus      1106 ~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1106 AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred             CCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-eeeehhhhCCeEEecC
Confidence            34466888888854  345777787555 999974221   11111111   1    111111 23345443 4455555


Q ss_pred             CCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEec-CccEEE---eCCeEEEEEcCCC---eeeEEEeeccCC--
Q 014007          148 GPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADL---KLLHQIETIANP--  216 (432)
Q Consensus       148 ~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~--  216 (432)
                      + -     ..|+|||......+..+.  ....|+++.-+- .|..++   .||.|++||.+..   ..+...+.|...  
T Consensus      1185 d-~-----r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1185 D-V-----RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred             C-e-----eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence            4 4     899999999888888777  455667665443 345555   4999999998763   345666777766  


Q ss_pred             cceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee---eeecc---CCceeEEEEcCCCCEEEEEcCCCceEEEEECCC
Q 014007          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAH---DSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (432)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~  290 (432)
                      |..+.+.+.|-.- ++ +|+.+|.|++||++.....   .+..|   .+..+++..+++...+|+|+. +. |+||++ .
T Consensus      1259 Iv~~slq~~G~~e-lv-Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~-~ 1333 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGE-LV-SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSL-S 1333 (1387)
T ss_pred             ceeEEeecCCCcc-ee-eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEec-C
Confidence            7777787777653 33 4679999999999984222   22233   235999999999999999998 77 999997 4


Q ss_pred             CceEEEEEeC-----CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          291 GTLLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       291 ~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      |+.+..++..     ...+.+.+++|+|-.-+||+|+.|.+|.||.....+
T Consensus      1334 G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            5555444421     123568999999999999999999999999887654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.57  E-value=1.1e-12  Score=123.56  Aligned_cols=213  Identities=11%  Similarity=0.077  Sum_probs=143.7

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (432)
                      |.++|.+.....   .+. .+...+....|++++..++......  ....|++||+.+++......+.+.+.+++|+||+
T Consensus       172 l~~~d~~g~~~~---~l~-~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg  245 (417)
T TIGR02800       172 LQVADYDGANPQ---TIT-RSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG  245 (417)
T ss_pred             EEEEcCCCCCCE---Eee-cCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence            667776543322   222 2455678889999998877654320  0157999999988665544466677789999999


Q ss_pred             cEEEe----C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCce
Q 014007          188 IIVVL----E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (432)
Q Consensus       188 ~~~~~----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i  261 (432)
                      ..++.    +  ..|++||+.+++.. .+..+........|+|+++.+++.+.-.....|.++|+.++....+..+...+
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~  324 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN  324 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence            86652    2  36999998876543 33333334456789999988776542112346888888877766666666778


Q ss_pred             eEEEEcCCCCEEEEEcCCC---ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC---eEEEEEe
Q 014007          262 ACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG---TVHVFNL  332 (432)
Q Consensus       262 ~~~~~sp~~~~l~~~~~dg---~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~  332 (432)
                      ..+.|+|+|++|+.++.++   . |.+||+.++... .+...   .......|+|||++|+..+.++   .+++.+.
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            8899999999999888775   6 899998876543 33321   2345668999999988877554   3445443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.57  E-value=7.2e-15  Score=136.54  Aligned_cols=237  Identities=14%  Similarity=0.160  Sum_probs=183.3

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA  202 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~  202 (432)
                      +|...|.+..|...+..+++|++|     ..|+||..+++.++.... |.+.|+.++.+.+..++++   |..|++|.+.
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd-----~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDD-----RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCcc-----ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            788899999999999999999999     999999999999999998 9999999999998888874   7789999999


Q ss_pred             CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee----e-eccCCceeEEEEcCCCCEEEEEc
Q 014007          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF----I-MAHDSRIACFALTQDGQLLATSS  277 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~----~-~~~~~~i~~~~~sp~~~~l~~~~  277 (432)
                      ++.++..+.+|.+.|+.++|+|-.       +.+.||++++||.+-.....    . .....-+.++.|..++..++|++
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             CCchHHHHhccccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            999999999999999999999964       23489999999998322111    1 12235577888888999999999


Q ss_pred             CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007          278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL  356 (432)
Q Consensus       278 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (432)
                      .|+. -..|.+.....        +...+.-+.++.| ..+.+++-.+-.+++|++.++..+.                 
T Consensus       336 ~d~e-a~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H-----------------  389 (1113)
T KOG0644|consen  336 RDGE-ARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH-----------------  389 (1113)
T ss_pred             CCcc-cccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhh-----------------
Confidence            9998 88887543211        1111111122212 2456677778889999999986432                 


Q ss_pred             eeEeecccceeecceeeEEEEecCCCceEEEEccCCC-EEEEEecCCeEEEEEecCCCCCcceE
Q 014007          357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILGMDGSFYRCQFDPVNGGEMTQ  419 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~  419 (432)
                                        .+.+|.+.+..+.++|-+. ...+++.||...||++-.....+...
T Consensus       390 ------------------~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  390 ------------------NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             ------------------hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence                              3557888899999999554 55589999999999986654443333

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.9e-12  Score=122.04  Aligned_cols=215  Identities=12%  Similarity=0.067  Sum_probs=139.1

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (432)
                      |.++|.+.....  ...  .+...+....|+|++..++..+.+.  ....|++||+.+++........+.+....|+|||
T Consensus       181 l~~~d~~g~~~~--~l~--~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG  254 (430)
T PRK00178        181 LQRSDYDGARAV--TLL--QSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDG  254 (430)
T ss_pred             EEEECCCCCCce--EEe--cCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCC
Confidence            666666544322  222  2556788899999998776543220  0147999999888654433345556678999999


Q ss_pred             cEEEe----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCce
Q 014007          188 IIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (432)
Q Consensus       188 ~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i  261 (432)
                      ..++.    ++  .|++||+.+++.. .+..+........|+|+++.+++.+.......|+++|+.++....+.......
T Consensus       255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~  333 (430)
T PRK00178        255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN  333 (430)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence            87762    33  6999999877643 34444444556889999998876642222346777787776665554333334


Q ss_pred             eEEEEcCCCCEEEEEcCC-C--ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-C--eEEEEEecC
Q 014007          262 ACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-G--TVHVFNLKV  334 (432)
Q Consensus       262 ~~~~~sp~~~~l~~~~~d-g--~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~  334 (432)
                      ....|+|+|++|+..+.+ +  . |.+||+.+++.. .+...   .......|+|||++|+..+.+ |  .|+++++..
T Consensus       334 ~~~~~Spdg~~i~~~~~~~~~~~-l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        334 ARPRLSADGKTLVMVHRQDGNFH-VAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             cceEECCCCCEEEEEEccCCceE-EEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            567899999999876643 2  4 889999887653 33321   122356899999998877643 3  466666643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=2.4e-12  Score=120.88  Aligned_cols=215  Identities=13%  Similarity=0.069  Sum_probs=134.8

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (432)
                      |.++|.+.....  ...  .....+....|+|++..++....+.  ....|++||+.+++........+......|+|||
T Consensus       200 l~i~d~dG~~~~--~l~--~~~~~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG  273 (448)
T PRK04792        200 LMIADYDGYNEQ--MLL--RSPEPLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG  273 (448)
T ss_pred             EEEEeCCCCCce--Eee--cCCCcccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC
Confidence            555666544332  112  2455777889999998776543210  0146999999887654333334445678999999


Q ss_pred             cEEEe----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCce
Q 014007          188 IIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (432)
Q Consensus       188 ~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i  261 (432)
                      ..++.    ++  .|+++|+.+++. ..+..+........|+||++.+++.+.......|.++|+.++....+.......
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~  352 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN  352 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence            97762    44  588889887654 334334444567899999998776642222345666777776665554333334


Q ss_pred             eEEEEcCCCCEEEEEcCC-Cc-eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC-CC--eEEEEEec
Q 014007          262 ACFALTQDGQLLATSSTK-GT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KG--TVHVFNLK  333 (432)
Q Consensus       262 ~~~~~sp~~~~l~~~~~d-g~-~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~iwd~~  333 (432)
                      ...+|+|||++|+..+.+ +. .|.++|+.+++.. .+...   .......|+|||++|+..+. +|  .+++++.+
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            567899999998876653 32 1666788887653 33321   12234589999998877653 33  36666764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.55  E-value=1e-12  Score=112.43  Aligned_cols=244  Identities=14%  Similarity=0.138  Sum_probs=169.3

Q ss_pred             CCCCCeEEEEEcCCCC--EEEEE-cCCcEEEEEcCCCeeEEEe----ecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           83 SPPPTLLHISFNQDHG--CFAAG-TDHGFRIYNCDPFREIFRR----DFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~--~l~~~-~~~~i~iw~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      .....|..++|.-+++  .|... .+..+..+.+.........    .. ......|..+......+...  ..+     
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~-~l~~~~I~gl~~~dg~Litc--~~s-----  124 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTV-SLGTKSIKGLKLADGTLITC--VSS-----  124 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccc-ccccccccchhhcCCEEEEE--ecC-----
Confidence            3456788899987765  44444 3555666666544332111    11 13455666666554433333  333     


Q ss_pred             CeEEEEeCCCCc----eeEEeecCCceEEEEEecCccEEE-eC-----CeEEEEEcCCCeeeEEEeeccC---------C
Q 014007          156 NKVMIWDDHQSR----CIGELSFRSEVRSVKLRRDRIIVV-LE-----QKIFVYNFADLKLLHQIETIAN---------P  216 (432)
Q Consensus       156 ~~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~-~d-----~~i~i~d~~~~~~~~~~~~~~~---------~  216 (432)
                      |.+.+|..+.+.    .+..+.....+..+.-.+....++ +.     ..+.|||+...+.+.+-+...+         .
T Consensus       125 G~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW  204 (412)
T KOG3881|consen  125 GNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVW  204 (412)
T ss_pred             CcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeee
Confidence            899999987543    344455556777777777655555 33     4689999988765554332221         1


Q ss_pred             cceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceE
Q 014007          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (432)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~  294 (432)
                      ++.+.|-+......+++ ++.-+.|++||.+.  +++..+.-.+.+|+++...|+|+++++|..-+. +..||++.++.+
T Consensus       205 ~tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl~  282 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKLL  282 (412)
T ss_pred             eccceecCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCceee
Confidence            23456655522333333 34679999999987  456667777889999999999999999999999 999999999988


Q ss_pred             EE-EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          295 QE-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       295 ~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      .. +.+  -.+.|.++..+|.+++||+++-|+.|+|+|+++.+.+
T Consensus       283 g~~~kg--~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  283 GCGLKG--ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             ccccCC--ccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            87 443  5589999999999999999999999999999996644

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=5.8e-13  Score=112.00  Aligned_cols=244  Identities=12%  Similarity=0.213  Sum_probs=162.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCe---eEEEeeccc-----------CcceeEEEEeeeCCe--EEEec
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR---EIFRRDFER-----------GGGIGVVEMLFRCNI--LALVG  146 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~---~~~~~~~~~-----------~~~~~v~~~~~~~~~--~~~~s  146 (432)
                      ..+-|.+|.|..+|.+||+|..+| |.+|.-+...   ..+...++.           .-...|..+.|..++  ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            467899999999999999999777 8888653222   112222220           012356677776543  33444


Q ss_pred             CCCCCCCCCCeEEEEeCCCCc-----------------------------------eeEEee--cCCceEEEEEecCccE
Q 014007          147 GGPDPQYPLNKVMIWDDHQSR-----------------------------------CIGELS--FRSEVRSVKLRRDRII  189 (432)
Q Consensus       147 ~~~d~~~~~~~v~iwd~~~~~-----------------------------------~~~~~~--~~~~v~~~~~~~~~~~  189 (432)
                      ...|     .+|++|-+....                                   +.+.+.  |.-.|+++.++.|...
T Consensus       104 stNd-----ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen  104 STND-----KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             ecCC-----cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence            4445     899999764321                                   122333  5667899999998877


Q ss_pred             EEe--CCeEEEEEcCCCe-eeE--EEee-----ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-----eee
Q 014007          190 VVL--EQKIFVYNFADLK-LLH--QIET-----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----KFI  254 (432)
Q Consensus       190 ~~~--d~~i~i~d~~~~~-~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-----~~~  254 (432)
                      +.+  |=.|.+|+++--. ...  .++.     ....|+...|+|....+++-+  +..|.|++.|++...+     +.+
T Consensus       179 ~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS--SSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  179 FLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS--SSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             EeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe--cCCCcEEEeechhhhhhcchhhhh
Confidence            774  4489999987432 211  1211     223567788999877765443  4689999999995221     111


Q ss_pred             e------------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEEC-CCCceEEEEEeCCCc----------C---ceEE
Q 014007          255 M------------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNT-LDGTLLQEVRRGADR----------A---EIYS  308 (432)
Q Consensus       255 ~------------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~-~~~~~~~~~~~~~~~----------~---~i~~  308 (432)
                      .            .--..|..+.|+++|+|+++-..- + |++||+ ...+++.++..|..-          .   .-..
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe  334 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE  334 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence            1            123468899999999999887655 4 999999 566777777653110          1   2356


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       309 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      ++|+.++.++++|+..+.+++|++..+.
T Consensus       335 c~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  335 CSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             EEEcCCcceEecccccceEEEecCCCCc
Confidence            8999999999999999999999976654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.55  E-value=2e-13  Score=121.12  Aligned_cols=221  Identities=12%  Similarity=0.129  Sum_probs=141.2

Q ss_pred             CCCCEEEEEcCCc-EEEEEcCCCeeEEEeecc---cCcceeEEEEeeeCC--eEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007           95 QDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE---RGGGIGVVEMLFRCN--ILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (432)
Q Consensus        95 ~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~~~v~iwd~~~~~~  168 (432)
                      |++--|.+|-+.+ |++.+....+.  .+.+.   .-....++++.|-+.  ..++++- .+     |.+++||..    
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~--sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~-~s-----Gnlyly~~~----  250 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEV--SKLFNEERLINKSSVTCIKWVPGSDSLFLVAH-AS-----GNLYLYDKE----  250 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHH--HHhhhhcccccccceEEEEEEeCCCceEEEEE-ec-----CceEEeecc----
Confidence            3444566665444 76666432111  01111   013467788888653  4444443 33     899999851    


Q ss_pred             eEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC
Q 014007          169 IGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (432)
Q Consensus       169 ~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~  248 (432)
                         +.....-.+-...+++..+..+.....   .+..++..+......+..++|+|||++++.++   .||.++|||+.+
T Consensus       251 ---~~~~~t~p~~~~~k~~~~f~i~t~ksk---~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS---qDGfLRvF~fdt  321 (636)
T KOG2394|consen  251 ---IVCGATAPSYQALKDGDQFAILTSKSK---KTRNPVARWHIGEGSINEFAFSPDGKYLATVS---QDGFLRIFDFDT  321 (636)
T ss_pred             ---ccccCCCCcccccCCCCeeEEeeeecc---ccCCccceeEeccccccceeEcCCCceEEEEe---cCceEEEeeccH
Confidence               111111111112233333332111111   11244455555566888999999999776654   899999999998


Q ss_pred             Ccee-eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC--------------
Q 014007          249 KRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS--------------  313 (432)
Q Consensus       249 ~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~--------------  313 (432)
                      .++. .++..-+...|++|||||+||++|++|.- |.||.+..++.+..-.  .|+.+|..++|.|              
T Consensus       322 ~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-VtVwSf~erRVVARGq--GHkSWVs~VaFDpytt~~ee~~~~~~~  398 (636)
T KOG2394|consen  322 QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-VTVWSFEERRVVARGQ--GHKSWVSVVAFDPYTTSTEEWNNFSGM  398 (636)
T ss_pred             HHHHHHHHhhccceEEEEEcCCccEEEecCCcce-EEEEEeccceEEEecc--ccccceeeEeecccccccccccccccc
Confidence            6553 34556678999999999999999999999 9999999999887665  4889999999982              


Q ss_pred             -----------------C----C-------------CEEEEEeCCCeEEEEEecCCCCCC
Q 014007          314 -----------------N----A-------------QWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       314 -----------------~----~-------------~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                                       +    +             -.|.+.+.|-.+.+||+......+
T Consensus       399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence                             0    1             156678889999999998765433

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=3.2e-13  Score=128.91  Aligned_cols=195  Identities=13%  Similarity=0.162  Sum_probs=144.3

Q ss_pred             CceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCc--ceEEEecCCCcEEEEeecCCCCcEEEEEccCCc
Q 014007          176 SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK--GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (432)
Q Consensus       176 ~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~  250 (432)
                      ..|....+..+...++   .++.+.+||...+.....+.......  .++-+--..+.+++++ |+.-+.|.+|+.....
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~-gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS-GSVFGEIIVWKPHEDN  166 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe-ccccccEEEEeccccC
Confidence            3344344444444443   48899999988877666554322211  1122223344566664 6688999999987633


Q ss_pred             e-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007          251 T-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (432)
Q Consensus       251 ~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  329 (432)
                      . ..+.+|++.|.++.++-||+++++.+.|.+ +|+|++.+.+.+.... -.|...++.++|.|+  .+++++.|-+.++
T Consensus       167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~-fgHsaRvw~~~~~~n--~i~t~gedctcrv  242 (967)
T KOG0974|consen  167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTG-FGHSARVWACCFLPN--RIITVGEDCTCRV  242 (967)
T ss_pred             CcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccCccc-ccccceeEEEEeccc--eeEEeccceEEEE
Confidence            3 358899999999999999999999999999 9999999988776222 238899999999998  8999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC-CCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      |+....+                                    +..++.|. ..++.++..++...+++++.||.+++|+
T Consensus       243 W~~~~~~------------------------------------l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  243 WGVNGTQ------------------------------------LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             Eecccce------------------------------------ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            9665443                                    22344554 4589999999999999999999999998


Q ss_pred             ecC
Q 014007          409 FDP  411 (432)
Q Consensus       409 ~~~  411 (432)
                      +.-
T Consensus       287 l~~  289 (967)
T KOG0974|consen  287 LNG  289 (967)
T ss_pred             hhc
Confidence            855

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.53  E-value=1.2e-10  Score=99.52  Aligned_cols=275  Identities=11%  Similarity=0.055  Sum_probs=178.3

Q ss_pred             CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC--Cce--eEEee-cCCceE
Q 014007          105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--SRC--IGELS-FRSEVR  179 (432)
Q Consensus       105 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~--~~~--~~~~~-~~~~v~  179 (432)
                      +.+|++|++++..................-++++++...|.++..+..  .|.|.-|.+..  |+.  +.... ...+..
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~--~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE--EGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC--cCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            556999999743332211111246677788999999876665543311  27787777764  433  22222 344448


Q ss_pred             EEEEecCccEEEe----CCeEEEEEcCC-CeeeEE--EeeccCC----------cceEEEecCCCcEEEEeecCCCCcEE
Q 014007          180 SVKLRRDRIIVVL----EQKIFVYNFAD-LKLLHQ--IETIANP----------KGLCAVSQGVGSLVLVCPGLQKGQVR  242 (432)
Q Consensus       180 ~~~~~~~~~~~~~----d~~i~i~d~~~-~~~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (432)
                      .+++++++++++.    .|.|.++-+++ |.+...  +..|...          +....+.|+++.+++..-  .-..|.
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~  170 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIF  170 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEE
Confidence            8999999998884    68999999866 433221  1122222          567889999987654432  345788


Q ss_pred             EEEccCCceeee----eccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCC-ceEEEEEeC-------CCcCceEEE
Q 014007          243 VEHYASKRTKFI----MAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDG-TLLQEVRRG-------ADRAEIYSL  309 (432)
Q Consensus       243 i~d~~~~~~~~~----~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~-~~~~~~~~~-------~~~~~i~~~  309 (432)
                      +|++..+.+...    .......+.|.|+|++++..+.++ +++ |.+|..... ..+..++..       ........|
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st-V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI  249 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST-VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI  249 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE-EEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence            999987554322    234566789999999998876654 677 999998763 233333221       112467889


Q ss_pred             EECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEE
Q 014007          310 AFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF  388 (432)
Q Consensus       310 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  388 (432)
                      ..++||++|.++. ....|.+|.+......                 +.+              +.....+...-....|
T Consensus       250 his~dGrFLYasNRg~dsI~~f~V~~~~g~-----------------L~~--------------~~~~~teg~~PR~F~i  298 (346)
T COG2706         250 HISPDGRFLYASNRGHDSIAVFSVDPDGGK-----------------LEL--------------VGITPTEGQFPRDFNI  298 (346)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEcCCCCE-----------------EEE--------------EEEeccCCcCCcccee
Confidence            9999999998875 3447888888765311                 111              1111222233678899


Q ss_pred             ccCCCEEEEEecC-CeEEEEEecCCCCC
Q 014007          389 GHQKNTVVILGMD-GSFYRCQFDPVNGG  415 (432)
Q Consensus       389 s~~~~~l~~~~~d-g~v~iw~~~~~~~~  415 (432)
                      +++|++|+++.++ ..|.+|..|.++|.
T Consensus       299 ~~~g~~Liaa~q~sd~i~vf~~d~~TG~  326 (346)
T COG2706         299 NPSGRFLIAANQKSDNITVFERDKETGR  326 (346)
T ss_pred             CCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence            9999999999985 46999999998875

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=2.7e-12  Score=114.83  Aligned_cols=132  Identities=8%  Similarity=0.185  Sum_probs=102.4

Q ss_pred             eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEE
Q 014007          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA  274 (432)
Q Consensus       195 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~  274 (432)
                      +++++++....+...+ ...++|.++.|++++..+.++. |..-..+.|||++...+..+.  +++=+++-|+|.|++|+
T Consensus       252 ~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~Vvy-GfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~  327 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVY-GFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIIL  327 (566)
T ss_pred             eEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEE-ecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEE
Confidence            4555555422222222 2367899999999999887665 778899999999988776653  56678899999999998


Q ss_pred             EEcC---CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC------CCeEEEEEecCC
Q 014007          275 TSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD------KGTVHVFNLKVN  335 (432)
Q Consensus       275 ~~~~---dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~  335 (432)
                      .++.   .|. |.|||+.+.+++..+..    ..-+-+.|+|||++|++++.      |+.++||+....
T Consensus       328 lAGFGNL~G~-mEvwDv~n~K~i~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  328 LAGFGNLPGD-MEVWDVPNRKLIAKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EeecCCCCCc-eEEEeccchhhcccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            8775   467 99999999999888874    34567899999999998873      788999998653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=9e-12  Score=116.10  Aligned_cols=216  Identities=11%  Similarity=0.077  Sum_probs=135.1

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEE--E-ecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEe
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA--L-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR  184 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~-~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~  184 (432)
                      |.+.|.+.....   .+. ........-.|+|++..  + .....+.   ...|++.++..++........+.....+|+
T Consensus       167 l~~~d~dG~~~~---~lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~g---~~~I~~~~l~~g~~~~lt~~~g~~~~p~wS  239 (428)
T PRK01029        167 LWSVDYDGQNLR---PLT-QEHSLSITPTWMHIGSGFPYLYVSYKLG---VPKIFLGSLENPAGKKILALQGNQLMPTFS  239 (428)
T ss_pred             EEEEcCCCCCce---Ecc-cCCCCcccceEccCCCceEEEEEEccCC---CceEEEEECCCCCceEeecCCCCccceEEC
Confidence            555565544332   232 23345567789999743  3 2222220   157899999888655444456666778999


Q ss_pred             cCccEEEe----CC--e--EEEEEcCCC---eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEE--EccC--C
Q 014007          185 RDRIIVVL----EQ--K--IFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE--HYAS--K  249 (432)
Q Consensus       185 ~~~~~~~~----d~--~--i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~--d~~~--~  249 (432)
                      |||+.++.    +|  .  +.+|++..+   +...............+|+|||+.+++++  ..+|...+|  ++..  +
T Consensus       240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s--~~~g~~~ly~~~~~~~g~  317 (428)
T PRK01029        240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS--NKDGRPRIYIMQIDPEGQ  317 (428)
T ss_pred             CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE--CCCCCceEEEEECccccc
Confidence            99988773    22  3  444676652   32222222223345689999999887664  234544444  4432  3


Q ss_pred             ceeeeeccCCceeEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC---
Q 014007          250 RTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---  323 (432)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---  323 (432)
                      ....+..+...+....|+|||+.|+..+.+   .. |++||+.+++......   ....+....|+|||++|+....   
T Consensus       318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~-I~v~dl~~g~~~~Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g  393 (428)
T PRK01029        318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ-ICVYDLATGRDYQLTT---SPENKESPSWAIDSLHLVYSAGNSN  393 (428)
T ss_pred             ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcE-EEEEECCCCCeEEccC---CCCCccceEECCCCCEEEEEECCCC
Confidence            344555555677889999999988876543   35 9999998887654332   2245678999999998875442   


Q ss_pred             CCeEEEEEecCCC
Q 014007          324 KGTVHVFNLKVNS  336 (432)
Q Consensus       324 dg~i~iwd~~~~~  336 (432)
                      ...|+++|+.+++
T Consensus       394 ~~~L~~vdl~~g~  406 (428)
T PRK01029        394 ESELYLISLITKK  406 (428)
T ss_pred             CceEEEEECCCCC
Confidence            3568888887765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=8.9e-12  Score=111.34  Aligned_cols=294  Identities=16%  Similarity=0.168  Sum_probs=189.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC------CCCeEEE
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY------PLNKVMI  160 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~------~~~~v~i  160 (432)
                      .=+.+.|||-|.||++-...||.+|--......  +.+.   ...|.-+.|+|+..+|++-+..|.-      ....++|
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~--~RF~---Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQGIALWGGESFDRI--QRFY---HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeeeEEecCCceEEEEEeccceeeecCccHHHH--Hhcc---CCCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence            346789999999999999999999976555444  4442   3456778899999999987765432      2368999


Q ss_pred             EeCCCCceeEEeec---CCceE-EEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          161 WDDHQSRCIGELSF---RSEVR-SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       161 wd~~~~~~~~~~~~---~~~v~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      ||+.+|...+.+..   ...++ -..||.|+++++  ..+.|.||+.....++..-...-..|..+.|+|.++.++.-+.
T Consensus       287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp  366 (698)
T KOG2314|consen  287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP  366 (698)
T ss_pred             EEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence            99999998888872   22233 358999999999  4789999997764443322223456777889998765444332


Q ss_pred             cCC--CCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEc----------CCCceEEEEECCCCce-EEEEEeC
Q 014007          235 GLQ--KGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSS----------TKGTLVRIFNTLDGTL-LQEVRRG  300 (432)
Q Consensus       235 g~~--d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~----------~dg~~i~vwd~~~~~~-~~~~~~~  300 (432)
                      ...  -..+.+..+.++ .++...-|.-.=..+-|-.+|.+|+.--          .-.. +.|+.++.... +..+.  
T Consensus       367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~ve--  443 (698)
T KOG2314|consen  367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEVVE--  443 (698)
T ss_pred             cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCceeee--
Confidence            211  134455555443 2233223332333466777888876421          1123 66777665543 33333  


Q ss_pred             CCcCceEEEEECCCCCEEEEEe---CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE
Q 014007          301 ADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR  377 (432)
Q Consensus       301 ~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (432)
                       ....|...+|-|.|..+++-+   ...++.+|.+++......                 +              +..+ 
T Consensus       444 -lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~-----------------l--------------Vk~~-  490 (698)
T KOG2314|consen  444 -LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS-----------------L--------------VKEL-  490 (698)
T ss_pred             -cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh-----------------h--------------hhhh-
Confidence             447899999999999887654   345789998885221000                 0              0011 


Q ss_pred             ecCCCceEEEEccCCCEEEEEe---cCCeEEEEEecCCCCCcceEeee
Q 014007          378 LVEGSPYIVAFGHQKNTVVILG---MDGSFYRCQFDPVNGGEMTQLEY  422 (432)
Q Consensus       378 ~~~~~v~~~~~s~~~~~l~~~~---~dg~v~iw~~~~~~~~~~~~~~~  422 (432)
                       .....+.+-|+|.|++++.++   ..|.+..++.+...-+.+...++
T Consensus       491 -dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh  537 (698)
T KOG2314|consen  491 -DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH  537 (698)
T ss_pred             -cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc
Confidence             112467899999999988764   46889999988644444444333

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.5e-13  Score=122.21  Aligned_cols=211  Identities=12%  Similarity=0.137  Sum_probs=147.9

Q ss_pred             CCcccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeC--CeEEEecCCCCCC
Q 014007           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQ  152 (432)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~  152 (432)
                      .....+.+|.+-|+|+.|+.+|.+|++|+|+. +.|||.-..+..  ..+..+|...|.+..|-|  +...+++|..|  
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~tnnriv~sgAgD--  116 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPYTNNRIVLSGAGD--  116 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee--eeeecccccceeEEeeeccCCCeEEEeccCc--
Confidence            34567899999999999999999999999888 999997655444  444457999999998866  56788888888  


Q ss_pred             CCCCeEEEEeCCCC----------ceeEEee-cCCceEEEEEecCccEEE---e-CCeEEEEEcCCCeee-E--------
Q 014007          153 YPLNKVMIWDDHQS----------RCIGELS-FRSEVRSVKLRRDRIIVV---L-EQKIFVYNFADLKLL-H--------  208 (432)
Q Consensus       153 ~~~~~v~iwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~~~---~-d~~i~i~d~~~~~~~-~--------  208 (432)
                         ..|+++|+...          +....+. |...|..|+..|++-.++   + ||+|+-+|++..... .        
T Consensus       117 ---k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l  193 (758)
T KOG1310|consen  117 ---KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL  193 (758)
T ss_pred             ---ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence               99999998742          2233344 888899999998874333   2 999999999873211 1        


Q ss_pred             -EEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-------------------ceeee-eccC--------C
Q 014007          209 -QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-------------------RTKFI-MAHD--------S  259 (432)
Q Consensus       209 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-------------------~~~~~-~~~~--------~  259 (432)
                       .+....-...++.++|...+.+ +. |+.|.-.++||.+..                   .+..+ .+|-        .
T Consensus       194 ~ny~~~lielk~ltisp~rp~~l-aV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~  271 (758)
T KOG1310|consen  194 VNYNPQLIELKCLTISPSRPYYL-AV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDR  271 (758)
T ss_pred             HHhchhhheeeeeeecCCCCceE-Ee-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccc
Confidence             1111112335788999877654 43 458999999995420                   01111 1221        1


Q ss_pred             ---ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007          260 ---RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (432)
Q Consensus       260 ---~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~  296 (432)
                         .++-+.|+|+|.-|+..-.... |++||+..++....
T Consensus       272 ~~~~~t~vtfnpNGtElLvs~~gEh-VYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  272 YITCCTYVTFNPNGTELLVSWGGEH-VYLFDVNEDKSPTP  310 (758)
T ss_pred             ceeeeEEEEECCCCcEEEEeeCCeE-EEEEeecCCCCcee
Confidence               2566889999987766554455 99999987654443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=1e-10  Score=99.89  Aligned_cols=249  Identities=14%  Similarity=0.132  Sum_probs=173.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc----CCcEEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT----DHGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~----~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (432)
                      .-.+...++-|+|+|++++|.++.    +++|.-|.++.  ++..+..... .....-..++.++++.+++++..    .
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY----~  109 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANY----H  109 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEc----c
Confidence            344667888999999999888875    23488888875  4444333322 23333377888999988888763    3


Q ss_pred             CCeEEEEeCCC-Cc---eeEEeecCCc----------eEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEe---ec
Q 014007          155 LNKVMIWDDHQ-SR---CIGELSFRSE----------VRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIE---TI  213 (432)
Q Consensus       155 ~~~v~iwd~~~-~~---~~~~~~~~~~----------v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~---~~  213 (432)
                      .|.|.++-+.. |.   .+..+.|.+.          +....+.|++++++.    -.+|.+|++.+|++...-.   ..
T Consensus       110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~  189 (346)
T COG2706         110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP  189 (346)
T ss_pred             CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence            58999999865 43   3344556665          888999999998884    4689999999876532211   12


Q ss_pred             cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--Cceeeeec---------cCCceeEEEEcCCCCEEEEEcCCCce
Q 014007          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMA---------HDSRIACFALTQDGQLLATSSTKGTL  282 (432)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~---------~~~~i~~~~~sp~~~~l~~~~~dg~~  282 (432)
                      ...-+.+.|+|+++..++++  --+++|.+|..+.  +++..++.         -..+..+|.+++||++|.++..--..
T Consensus       190 G~GPRHi~FHpn~k~aY~v~--EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds  267 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVN--ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS  267 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEe--ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe
Confidence            23446799999999998886  5789999999887  44444332         23467789999999999887654333


Q ss_pred             EEEEECCCC-ceEEEEEe-CCCcCceEEEEECCCCCEEEEEeC-CCeEEEEEecCCC
Q 014007          283 VRIFNTLDG-TLLQEVRR-GADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKVNS  336 (432)
Q Consensus       283 i~vwd~~~~-~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~  336 (432)
                      |.+|.+... ..+..+.. ..+......+.|+++|++|+++.. +..|.+|.++...
T Consensus       268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            888876543 22322222 123344789999999999998884 4579999887544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=7.7e-12  Score=116.54  Aligned_cols=219  Identities=11%  Similarity=0.028  Sum_probs=133.7

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccE--EE--e--C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII--VV--L--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                      ..|.+.|...+...........+..-+|+|||..  ++  +  +  ..|++.++..++..+ +..........+|+|||+
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence            5788888765544333335666778899999864  32  2  3  368999998775433 333344455689999999


Q ss_pred             cEEEEee--cCCCCcEEEEEccC---Cceeeeec-cCCceeEEEEcCCCCEEEEEc-CCCceEEEE--ECCC-CceEEEE
Q 014007          228 SLVLVCP--GLQKGQVRVEHYAS---KRTKFIMA-HDSRIACFALTQDGQLLATSS-TKGTLVRIF--NTLD-GTLLQEV  297 (432)
Q Consensus       228 ~~~~~~~--g~~d~~i~i~d~~~---~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vw--d~~~-~~~~~~~  297 (432)
                      .++++..  |..+..+.+|++..   +....+.. +.......+|+|||+.|+..+ .+|. ..+|  ++.. +.....+
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~~g~~~~~l  322 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDPEGQSPRLL  322 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC-ceEEEEECcccccceEEe
Confidence            8877652  22233344466654   23333332 234456789999999877665 4564 4444  4432 2333444


Q ss_pred             EeCCCcCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeE
Q 014007          298 RRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA  374 (432)
Q Consensus       298 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (432)
                      ..  ....+....|||||++|+..+.+   ..|++||+.+++..                                    
T Consensus       323 t~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~------------------------------------  364 (428)
T PRK01029        323 TK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY------------------------------------  364 (428)
T ss_pred             cc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE------------------------------------
Confidence            42  22456789999999999876543   46999999887621                                    


Q ss_pred             EEEecCCCceEEEEccCCCEEEEEe-cCCeEEEEEecCCCC
Q 014007          375 QFRLVEGSPYIVAFGHQKNTVVILG-MDGSFYRCQFDPVNG  414 (432)
Q Consensus       375 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~  414 (432)
                      .+......+....|+|||+.|+... .+|.-.||.++...+
T Consensus       365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            1222223456789999999887544 334434444444433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.51  E-value=5.8e-12  Score=114.34  Aligned_cols=237  Identities=12%  Similarity=0.136  Sum_probs=148.4

Q ss_pred             EEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007           89 LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        89 ~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      ..+.|+|||+++.+++ |+.|.++|+.+.+..  ..+.  -......+++++++.+++.+...    ++.+.++|.++.+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v--~~i~--~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle  111 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVV--ATIK--VGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLE  111 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEE--EEEE---SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEE--EEEe--cCCCcceEEEcCCCCEEEEEecC----CCceeEecccccc
Confidence            4478999999888877 555999999988866  5554  44556789999999888766532    2899999999999


Q ss_pred             eeEEeec--------CCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeee--EEEeeccCCcceEEEecCCCcEEEEe
Q 014007          168 CIGELSF--------RSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLL--HQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       168 ~~~~~~~--------~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      .++.+..        ...+.++..++... +++.   .+.|.+.|..+.+.+  ..+.. ........|+|++++++++.
T Consensus       112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-GRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEE
T ss_pred             ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-cccccccccCcccceeeecc
Confidence            9988762        23567887888776 4443   478888887765433  23322 23344688999998876654


Q ss_pred             ecCCCCcEEEEEccCCcee--------------------------------------------------------eeecc
Q 014007          234 PGLQKGQVRVEHYASKRTK--------------------------------------------------------FIMAH  257 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~~~~~--------------------------------------------------------~~~~~  257 (432)
                      .  .+..|.++|..++...                                                        .+...
T Consensus       191 ~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~  268 (369)
T PF02239_consen  191 N--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ  268 (369)
T ss_dssp             G--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred             c--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence            2  3456777776653211                                                        11111


Q ss_pred             CCceeEEEEcCCCCEEEEE----cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe--CCCeEEEEE
Q 014007          258 DSRIACFALTQDGQLLATS----STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS--DKGTVHVFN  331 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~----~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~iwd  331 (432)
                      ... .-+..+|+++++.+.    ...+. |.++|.++.+.+..+.... ...+..+.|++||+++..+.  .++.|.+||
T Consensus       269 G~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  269 GGG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             SSS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred             CCc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence            112 445679999999988    34467 9999999998877776321 13489999999999766554  344899999


Q ss_pred             ecCCCCCC
Q 014007          332 LKVNSGSA  339 (432)
Q Consensus       332 ~~~~~~~~  339 (432)
                      ..+.+.++
T Consensus       346 ~~Tl~~~~  353 (369)
T PF02239_consen  346 AKTLKEKK  353 (369)
T ss_dssp             TTTTEEEE
T ss_pred             CCCcEEEE
Confidence            99988543

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.50  E-value=3.1e-10  Score=100.80  Aligned_cols=259  Identities=11%  Similarity=0.134  Sum_probs=157.9

Q ss_pred             CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCC----------CCCCCCCeEEEEeCCCCceeEEeecC
Q 014007          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP----------DPQYPLNKVMIWDDHQSRCIGELSFR  175 (432)
Q Consensus       106 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~----------d~~~~~~~v~iwd~~~~~~~~~~~~~  175 (432)
                      +.|.+.|.++.+..  ..+..+.....  + .++++..+..+..          +     ..|.+||..+++.+.++...
T Consensus        27 ~~v~ViD~~~~~v~--g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~-----d~V~v~D~~t~~~~~~i~~p   96 (352)
T TIGR02658        27 TQVYTIDGEAGRVL--GMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRT-----DYVEVIDPQTHLPIADIELP   96 (352)
T ss_pred             ceEEEEECCCCEEE--EEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCC-----CEEEEEECccCcEEeEEccC
Confidence            45999998887655  34431222222  3 6777655444333          4     79999999999999998843


Q ss_pred             Cc--------eEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007          176 SE--------VRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (432)
Q Consensus       176 ~~--------v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (432)
                      ..        ...++++|||++++.     +..|.++|+.+++.+.++.... .......+... . ++.|   .||...
T Consensus        97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~-~~~~---~Dg~~~  170 (352)
T TIGR02658        97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT-F-FMHC---RDGSLA  170 (352)
T ss_pred             CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-c-EEEe---ecCceE
Confidence            33        337899999998872     6799999999999998887532 22222222111 1 1222   244444


Q ss_pred             EEEccC-Cc-----eeeeeccCCcee-EEEEcC-CCCEEEEEcCCCceEEEEECCCC-----ceEEEEEeC-----CCcC
Q 014007          243 VEHYAS-KR-----TKFIMAHDSRIA-CFALTQ-DGQLLATSSTKGTLVRIFNTLDG-----TLLQEVRRG-----ADRA  304 (432)
Q Consensus       243 i~d~~~-~~-----~~~~~~~~~~i~-~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~-----~~~~~~~~~-----~~~~  304 (432)
                      ...+.. +.     ...+.....++. .-.|.+ +|+++.+..+ |. |.+.|+...     +....+...     -..+
T Consensus       171 ~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~  248 (352)
T TIGR02658       171 KVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG  248 (352)
T ss_pred             EEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCC
Confidence            333322 11     011111000000 003455 8888888777 88 999996433     333322211     1224


Q ss_pred             ceEEEEECCCCCEEEEEe----------CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeE
Q 014007          305 EIYSLAFSSNAQWLAVSS----------DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA  374 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (432)
                      .+.-++++++++.+++..          ..+.|.++|..+.+.+                                   .
T Consensus       249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi-----------------------------------~  293 (352)
T TIGR02658       249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL-----------------------------------R  293 (352)
T ss_pred             cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE-----------------------------------E
Confidence            455599999999888743          2257999999888732                                   1


Q ss_pred             EEEecCCCceEEEEccCCC-EEEEEe-cCCeEEEEEecCCCCCcceEe
Q 014007          375 QFRLVEGSPYIVAFGHQKN-TVVILG-MDGSFYRCQFDPVNGGEMTQL  420 (432)
Q Consensus       375 ~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~~  420 (432)
                      .+.. ...+..++|+||++ +|++.+ .++.|.++|  ..+++.+..+
T Consensus       294 ~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD--~~t~k~i~~i  338 (352)
T TIGR02658       294 KIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD--AETGKELSSV  338 (352)
T ss_pred             EEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE--CcCCeEEeee
Confidence            2222 23588999999999 888777 578899955  5666666655

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=9.5e-12  Score=106.56  Aligned_cols=238  Identities=13%  Similarity=0.104  Sum_probs=167.9

Q ss_pred             cceeEEEEeeeC--CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe------e-cCCceEEEEEecCccEEE-eCCeEE
Q 014007          128 GGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL------S-FRSEVRSVKLRRDRIIVV-LEQKIF  197 (432)
Q Consensus       128 ~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~------~-~~~~v~~~~~~~~~~~~~-~d~~i~  197 (432)
                      ....+..++|..  +...+.....+     ..+..+.+....+...+      . ...+|.+++....-.+.+ .+|.+.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~-----~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~  128 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSAD-----DDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQ  128 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccC-----cccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEE
Confidence            344566666643  44566666444     56777776666554443      1 456677776654444444 489999


Q ss_pred             EEEcCCCe----eeEEEeeccCCcceEEEecCCCcEEEEeecCCC--CcEEEEEccCCceeeeecc-----------CCc
Q 014007          198 VYNFADLK----LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK--GQVRVEHYASKRTKFIMAH-----------DSR  260 (432)
Q Consensus       198 i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--~~i~i~d~~~~~~~~~~~~-----------~~~  260 (432)
                      +|..+.+.    .+..+..+ ..+..+.-++...++ ++ .|+..  ..+.+||+... .+.+.+-           .-+
T Consensus       129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~I-va-~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW  204 (412)
T KOG3881|consen  129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYI-VA-TGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVW  204 (412)
T ss_pred             EEeccCCccccccceeeecC-CceeeeccCCCCCce-Ee-cCchhcccceeeeecccc-eeeeeccCCCCccccceeeee
Confidence            99987432    33334333 233344445544443 34 35577  88999999886 4334321           235


Q ss_pred             eeEEEEcCC--CCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          261 IACFALTQD--GQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       261 i~~~~~sp~--~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      ++++.|-+.  ...||+++.-+. ||+||.+.+ +++..|..  .+.+++++...|+|+++++|..-|.+..||++.++.
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hq-vR~YDt~~qRRPV~~fd~--~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl  281 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQ-VRLYDTRHQRRPVAQFDF--LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL  281 (412)
T ss_pred             eccceecCCCCCceEEEEeccee-EEEecCcccCcceeEecc--ccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence            788999887  788999999999 999999876 45666664  457899999999999999999999999999999873


Q ss_pred             CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      ..                                  ..+++-.|.|+.+..+|..++|+++|-|..|+|+++..
T Consensus       282 ~g----------------------------------~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  282 LG----------------------------------CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ec----------------------------------cccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            21                                  12556678899999999999999999999999988865

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=1.1e-12  Score=115.23  Aligned_cols=253  Identities=17%  Similarity=0.130  Sum_probs=180.4

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecC---ccEEE--eCCeEEEE
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRD---RIIVV--LEQKIFVY  199 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~---~~~~~--~d~~i~i~  199 (432)
                      .|.+.|..+.|+..+..+++++.|     ..|.+||+..++.+..+.  |...|....|-|.   ..++.  .||.+++=
T Consensus       140 ~H~GcVntV~FN~~Gd~l~SgSDD-----~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGDVLASGSDD-----LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             CCCCccceeeecccCceeeccCcc-----ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            799999999999999999999999     999999999999888887  8888888888774   33333  28888887


Q ss_pred             EcCC-Cee--eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee----eeeccCC---ceeEEEEcCC
Q 014007          200 NFAD-LKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FIMAHDS---RIACFALTQD  269 (432)
Q Consensus       200 d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----~~~~~~~---~i~~~~~sp~  269 (432)
                      .+.. +.+  ...+..|.+++..+++.|+....++.+  +.|+.+.-+|++.....    ....+..   ....++..|.
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~--geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC--GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCCCccccc--ccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            6554 322  344556888999999999998887665  47999999999884322    2233444   5778999995


Q ss_pred             C-CEEEEEcCCCceEEEEECCCCce------EEEEEeC----CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          270 G-QLLATSSTKGTLVRIFNTLDGTL------LQEVRRG----ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       270 ~-~~l~~~~~dg~~i~vwd~~~~~~------~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      . ..+++|+.|.. +++||.+.-..      +..+..+    .....|++++|+.++.-|++...|-.|++|.-.-+...
T Consensus       293 nt~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~  371 (559)
T KOG1334|consen  293 NTNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS  371 (559)
T ss_pred             CccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence            4 48999999999 99999875321      2222221    13357999999988887777778888999944333311


Q ss_pred             CCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC--CceEEE-EccCCCEEEEEecCCeEEEEEe
Q 014007          339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG--SPYIVA-FGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~-~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      ...+            .- ....+.+         ..+++|.+  .|..+- |.|...++++|+.-|.|+||+=
T Consensus       372 ~p~~------------~s-~~~~~~k---------~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K  423 (559)
T KOG1334|consen  372 EPDP------------SS-PREQYVK---------RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK  423 (559)
T ss_pred             CCCC------------Cc-chhhccc---------hhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence            1100            00 0001111         12566653  466665 4678999999999999999984

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.5e-10  Score=107.30  Aligned_cols=213  Identities=11%  Similarity=0.032  Sum_probs=139.7

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccE-EEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII-VVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      ..|.+-|.. |...+.+...+......|+|||+. ++.      +..|+++|+.+++..... ...+......|+|||+.
T Consensus       169 ~~l~~~d~d-g~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYT-LTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCC-CCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCE
Confidence            567777754 333444443347788999999974 442      246999999887654433 23444556789999998


Q ss_pred             EEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC-C--ceEEEEECCCCceEEEEEeCCCcCc
Q 014007          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAE  305 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g--~~i~vwd~~~~~~~~~~~~~~~~~~  305 (432)
                      +++......+..|.++|+.++....+..+........|+|||+.|+..+.. +  . |++.|+.+++..+....+   . 
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~-Iy~~dl~~g~~~rlt~~g---~-  321 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPN-IFMKKLNSGSVEQVVFHG---K-  321 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCce-EEEEECCCCCeEeCccCC---C-
Confidence            877654344677888898888777766555444567899999887766643 2  4 888899887764433321   1 


Q ss_pred             eEEEEECCCCCEEEEEeCC---------CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE
Q 014007          306 IYSLAFSSNAQWLAVSSDK---------GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF  376 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (432)
                       ....|||||++|+.....         ..|++.|+.++...                                    .+
T Consensus       322 -~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~------------------------------------~L  364 (419)
T PRK04043        322 -NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR------------------------------------RL  364 (419)
T ss_pred             -cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE------------------------------------EC
Confidence             124899999998876643         26777777766411                                    11


Q ss_pred             EecCCCceEEEEccCCCEEEEEecC-CeEEEEEecCCC
Q 014007          377 RLVEGSPYIVAFGHQKNTVVILGMD-GSFYRCQFDPVN  413 (432)
Q Consensus       377 ~~~~~~v~~~~~s~~~~~l~~~~~d-g~v~iw~~~~~~  413 (432)
                      ... +......|+|||+.|+..+.+ |.-.+|-++...
T Consensus       365 T~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        365 TAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            111 122358899999988776654 455566666643

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=1.7e-11  Score=112.85  Aligned_cols=287  Identities=14%  Similarity=0.176  Sum_probs=193.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee-------------EEEeecccCcceeEEEEeeeCCeEEEecCC
Q 014007           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE-------------IFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  148 (432)
                      .......|+.|+.+..++|+|+.+| +++..+.+...             ...+.+. +|...|.-+.|+.+...+.+++
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEeccccccccccC
Confidence            3456789999999999999999655 88888753221             1223454 8999999999999999999999


Q ss_pred             CCCCCCCCeEEEEeCCCCceeEEee---cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeee-EEEeeccCCcceEE
Q 014007          149 PDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL-HQIETIANPKGLCA  221 (432)
Q Consensus       149 ~d~~~~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~  221 (432)
                      .+     |.|.+|-+-.|.-..++.   .++.|.+++|+.||..++   .||.|.+=.+...+.. +.+++  .....+.
T Consensus        91 t~-----GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~  163 (1189)
T KOG2041|consen   91 TS-----GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL  163 (1189)
T ss_pred             CC-----ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence            99     999999998886443332   577899999999998877   3898887776543221 12221  2234688


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccCCce--------ee----eeccCCceeEEEEc--------CCCCEEEEEcCCCc
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRT--------KF----IMAHDSRIACFALT--------QDGQLLATSSTKGT  281 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--------~~----~~~~~~~i~~~~~s--------p~~~~l~~~~~dg~  281 (432)
                      |++|.+.+++.   -.+|.+.+||....-.        ..    +......|..+.|.        |+...|+++..+|.
T Consensus       164 ws~D~~~~Lf~---~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr  240 (1189)
T KOG2041|consen  164 WSEDLEQALFK---KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR  240 (1189)
T ss_pred             ecccHHHHHhh---hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence            99998776544   3679999999876211        11    11122235555553        47788999999998


Q ss_pred             eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEee
Q 014007          282 LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG  361 (432)
Q Consensus       282 ~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (432)
                       +.|-.-.+......+..   .-.+....|+++|..||.++.+..     ....+               ..+...|.+.
T Consensus       241 -~QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~d-----a~~~~---------------d~n~v~Fysp  296 (1189)
T KOG2041|consen  241 -MQIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSD-----ADEPT---------------DSNKVHFYSP  296 (1189)
T ss_pred             -ehhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCccc-----ccCcc---------------ccceEEEecc
Confidence             88765444444444553   257899999999999999986531     11111               0011111111


Q ss_pred             cccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          362 VLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      +       ..-+.+++.+...|++++|-..|-.++.+ .|+.|++=++.|+
T Consensus       297 ~-------G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~  339 (1189)
T KOG2041|consen  297 Y-------GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPE  339 (1189)
T ss_pred             c-------hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeeccc
Confidence            0       01145677888889999998777666654 4778887776663

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.46  E-value=2.1e-11  Score=102.78  Aligned_cols=246  Identities=12%  Similarity=0.131  Sum_probs=168.8

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEc-CCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (432)
                      -.+..++|.+.|+....-|...-+.+.+ |.+++||-- +.++.  -..+...-...+..+.+..+...|+.+-.+    
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~--wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n----   89 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY--WPSIYHYMPSPCSAMEYVSESRRLYVGQDN----   89 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc--CchhhhhCCCCceEeeeeccceEEEEEEec----
Confidence            3567888999999888877666666666 666999964 33332  233332356788899999999999999888    


Q ss_pred             CCeEEEEeCCC----CceeEEee-cCCceEEEEEecCccEEEeC--CeEEEEEc-CCCeeeEEEeeccCCcceEEEecCC
Q 014007          155 LNKVMIWDDHQ----SRCIGELS-FRSEVRSVKLRRDRIIVVLE--QKIFVYNF-ADLKLLHQIETIANPKGLCAVSQGV  226 (432)
Q Consensus       155 ~~~v~iwd~~~----~~~~~~~~-~~~~v~~~~~~~~~~~~~~d--~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~  226 (432)
                       |++.-+.+..    ....+.+. |...+..+-|+.....+++.  ++-..|.. +.+..+..+.... ......+.-. 
T Consensus        90 -gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~-~~t~~~~d~~-  166 (404)
T KOG1409|consen   90 -GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET-PASALQFDAL-  166 (404)
T ss_pred             -ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec-cCCCCceeeE-
Confidence             9999887643    33444444 89999999999887777752  23334443 3333322221100 0011111111 


Q ss_pred             CcEEEEeecCCCCcEEEEEccC---CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEE-EEEeCCC
Q 014007          227 GSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ-EVRRGAD  302 (432)
Q Consensus       227 ~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~-~~~~~~~  302 (432)
                          .+..|...|.|.+-.+..   +.+.++.+|.+.+.+++|.+...+|++|..|.. |.+||+.-++-.. ++.  .|
T Consensus       167 ----~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~--gh  239 (404)
T KOG1409|consen  167 ----YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQ--GH  239 (404)
T ss_pred             ----EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeec--cc
Confidence                233455666666655443   567788899999999999999999999999999 9999987554433 333  36


Q ss_pred             cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       303 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      ...|..+..-+--+.|.+++.||.|.+|+.+..+..
T Consensus       240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             hhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence            678888888888889999999999999999876543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.46  E-value=3.2e-11  Score=99.59  Aligned_cols=259  Identities=11%  Similarity=0.110  Sum_probs=165.3

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeC---CeE-EEecCCCCCCCCCCeEEEEeCCCCceeEEee-c------CC
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F------RS  176 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~------~~  176 (432)
                      +.+|++...+......+.......+..|.|.-   ++. .++-+...     |.|.++..........+. .      ..
T Consensus        48 l~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~-----G~i~~~r~~~~~ss~~L~~ls~~ki~~~  122 (339)
T KOG0280|consen   48 LHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHAR-----GQIQLYRNDEDESSVHLRGLSSKKISVV  122 (339)
T ss_pred             eEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecccc-----ceEEEEeeccceeeeeecccchhhhhhe
Confidence            77888766554432222212444555566532   222 44444555     889999765544433333 0      11


Q ss_pred             ceEEEEEecCccEEE---eCCeEEEEEcCCCee--eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007          177 EVRSVKLRRDRIIVV---LEQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (432)
Q Consensus       177 ~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~  251 (432)
                      ...++.|++.+.-++   ++|.+.+.+......  ++.++.|.-......|+.....+  +.+|+.|+.+..||++....
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnl--vytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNL--VYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCce--EEecCCCceEEEEEecCCcc
Confidence            245677888777666   377787666555443  34778888888888888776654  33677999999999995332


Q ss_pred             e---eeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECC-CCceEEEEEeCCCcCceEEEEECCCC--CEEEEEeCC
Q 014007          252 K---FIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNA--QWLAVSSDK  324 (432)
Q Consensus       252 ~---~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~d  324 (432)
                      .   ..+.|...|.+|.-+| .+.++++|+.|.. |++||.+ -++++..-.   ..+.|+.+.++|.-  +.|+++-.+
T Consensus       201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~  276 (339)
T KOG0280|consen  201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMHN  276 (339)
T ss_pred             eeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHhc
Confidence            2   2456889999998886 6789999999999 9999998 466665544   44889999999953  344444444


Q ss_pred             CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec-CCe
Q 014007          325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM-DGS  403 (432)
Q Consensus       325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~  403 (432)
                       -.+|-+........                              .-.+...+.|.+-+..-.|.....+|++++. |..
T Consensus       277 -G~ki~~~~~~~~e~------------------------------~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~  325 (339)
T KOG0280|consen  277 -GAKILDSSDKVLEF------------------------------QIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK  325 (339)
T ss_pred             -CceEEEecccccch------------------------------heeeeccccccceeeccccccccceeeeeeccccc
Confidence             47888887764210                              0013345667665556666444456887654 666


Q ss_pred             EE-EEE
Q 014007          404 FY-RCQ  408 (432)
Q Consensus       404 v~-iw~  408 (432)
                      ++ +|-
T Consensus       326 ~~~~Wl  331 (339)
T KOG0280|consen  326 IRQLWL  331 (339)
T ss_pred             eeeeee
Confidence            44 654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.44  E-value=5.8e-10  Score=99.06  Aligned_cols=237  Identities=13%  Similarity=0.043  Sum_probs=153.5

Q ss_pred             EcCCCCEEEEEcC-----------CcEEEEEcCCCeeEEEeecccC----cceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           93 FNQDHGCFAAGTD-----------HGFRIYNCDPFREIFRRDFERG----GGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        93 ~s~~~~~l~~~~~-----------~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      +||||+.|+++..           +.|.+||..+.+......+...    ....-..+.+++++..++....+|   ...
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p---~~~  129 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP---SPA  129 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC---CCE
Confidence            9999998776644           3499999999887744443211    122334678899987776544221   189


Q ss_pred             EEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eCCeEEEEEcCC-Ceee-EEEee-cc--CCcc-eEEEec-CCCcE
Q 014007          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-LKLL-HQIET-IA--NPKG-LCAVSQ-GVGSL  229 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~-~~~~~-~~--~~~~-~~~~~~-~~~~~  229 (432)
                      |.+.|+.+++.+.++...+...-...+++..++. .||......+.+ ++.. ..... +.  .++. .-.+.+ ++..+
T Consensus       130 V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~  209 (352)
T TIGR02658       130 VGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV  209 (352)
T ss_pred             EEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence            9999999999999998655444444544444433 466655544433 2211 11111 01  1110 114456 66555


Q ss_pred             EEEeecCCCCcEEEEEccCCcee------eee-------ccCCceeEEEEcCCCCEEEEEcC----------CCceEEEE
Q 014007          230 VLVCPGLQKGQVRVEHYASKRTK------FIM-------AHDSRIACFALTQDGQLLATSST----------KGTLVRIF  286 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~~~------~~~-------~~~~~i~~~~~sp~~~~l~~~~~----------dg~~i~vw  286 (432)
                      ++.    ..|.|.+.|+......      .+.       -..+.+.-++++|+++.|++...          .+. |.++
T Consensus       210 ~vs----~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~Vi  284 (352)
T TIGR02658       210 WPT----YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LFVV  284 (352)
T ss_pred             EEe----cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EEEE
Confidence            443    3499999997553221      111       12344556999999998888431          135 9999


Q ss_pred             ECCCCceEEEEEeCCCcCceEEEEECCCCC-EEEEEe-CCCeEEEEEecCCCCCCC
Q 014007          287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSAR  340 (432)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~  340 (432)
                      |..+++.+..+..+   ..+..++++||++ +|++.. .++.|.++|+.+++.++.
T Consensus       285 D~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       285 DAKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             ECCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence            99999999999853   5789999999999 777666 678899999999885543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.6e-11  Score=110.11  Aligned_cols=213  Identities=16%  Similarity=0.207  Sum_probs=143.5

Q ss_pred             EEeecCCceEEEEEecCccEEEeC----CeEEEEEcCCCeeeEE----------------------------EeeccC--
Q 014007          170 GELSFRSEVRSVKLRRDRIIVVLE----QKIFVYNFADLKLLHQ----------------------------IETIAN--  215 (432)
Q Consensus       170 ~~~~~~~~v~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~----------------------------~~~~~~--  215 (432)
                      +.|.+....+.|..+|||+|+.+-    -.|++||+....+...                            +..|..  
T Consensus        46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G  125 (703)
T KOG2321|consen   46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG  125 (703)
T ss_pred             HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence            345577888999999999999864    4799999876432111                            111100  


Q ss_pred             ---------CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007          216 ---------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (432)
Q Consensus       216 ---------~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v  285 (432)
                               .-..++++.-.-.++++.   ....|+-+++..++. ..+....+.++++..++...+|++|+.+|. |.+
T Consensus       126 ~hy~~RIP~~GRDm~y~~~scDly~~g---sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~-VEf  201 (703)
T KOG2321|consen  126 RHYRTRIPKFGRDMKYHKPSCDLYLVG---SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV-VEF  201 (703)
T ss_pred             eeeeeecCcCCccccccCCCccEEEee---cCcceEEEEccccccccccccccccceeeeecCccceEEecccCce-EEE
Confidence                     001122222222344443   235677777777553 345556688999999999899999999999 999


Q ss_pred             EECCCCceEEEEEeCC----Cc-----CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007          286 FNTLDGTLLQEVRRGA----DR-----AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL  356 (432)
Q Consensus       286 wd~~~~~~~~~~~~~~----~~-----~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (432)
                      ||.++...+..+....    |.     ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++.                 
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-----------------  264 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-----------------  264 (703)
T ss_pred             ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-----------------
Confidence            9999887777665422    12     249999999999999999999999999999987542                 


Q ss_pred             eeEeecccceeecceeeEEEEecC--CCceEEEEccC--CCEEEEEecCCeEEEEEecCCCCCcceEeeeccc
Q 014007          357 SFIKGVLPKYFSSEWSVAQFRLVE--GSPYIVAFGHQ--KNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNF  425 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  425 (432)
                                         .+.|.  -+|..+.|-+.  ++.|++ .....++||+  ..+|+.+..++...-
T Consensus       265 -------------------~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd--~~~Gk~~asiEpt~~  315 (703)
T KOG2321|consen  265 -------------------VKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWD--ECTGKPMASIEPTSD  315 (703)
T ss_pred             -------------------ecccCCccceeeecccccCCCceEEe-cchHHhhhcc--cccCCceeeccccCC
Confidence                               22233  35777888664  334443 3456789976  466777766665443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.42  E-value=4.6e-11  Score=116.22  Aligned_cols=267  Identities=12%  Similarity=0.061  Sum_probs=170.3

Q ss_pred             eecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCCC-------ceeEEee-cCCceEEEEEecCccEEEe
Q 014007          122 RDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRIIVVL  192 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~  192 (432)
                      ..+. .|...+..++.++.. .++++|+.|     |+|++||...-       +...++. ..+.+.++..-+.+..++.
T Consensus      1042 AhL~-Ehs~~v~k~a~s~~~~s~FvsgS~D-----GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1042 AHLH-EHSSAVIKLAVSSEHTSLFVSGSDD-----GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred             ehhh-hccccccceeecCCCCceEEEecCC-----ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence            4443 577777788776655 999999999     99999997642       2334444 5788999988888887773


Q ss_pred             ---CCeEEEEEcCCC--e-----eeEEEeecc--CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee---eeecc
Q 014007          193 ---EQKIFVYNFADL--K-----LLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAH  257 (432)
Q Consensus       193 ---d~~i~i~d~~~~--~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~~~~~  257 (432)
                         ||.|++.++...  +     +......+.  ..+..-++........+++ +...+.|..||++.....   .....
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhcCcc
Confidence               999999998762  1     111111111  1222333333333322332 347789999999884321   23345


Q ss_pred             CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC---CEEEEEe--CCCeEEEEEe
Q 014007          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA---QWLAVSS--DKGTVHVFNL  332 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~--~dg~i~iwd~  332 (432)
                      .+.|++++.+|.+.++++|+..|. +.+||++=+.++.....+ +..++..+..+|-.   ...++++  ..+.|.+|++
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence            678999999999999999999999 999999998888887754 44788888877643   3444443  5788999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          333 KVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      .++.+...+-..      .....+.   ..+|.-..       -+.+.-.....++..-+.++.+|+.|+.|+.||....
T Consensus      1273 ~~g~~~~vl~~s------~~~p~ls---~~~Ps~~~-------~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1273 ETGLRQTVLWAS------DGAPILS---YALPSNDA-------RKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             ccCcceEEEEcC------CCCcchh---hhcccccC-------CCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            998643222110      0000000   00110000       0011112233445556778999999999999987554


Q ss_pred             C
Q 014007          413 N  413 (432)
Q Consensus       413 ~  413 (432)
                      .
T Consensus      1337 ~ 1337 (1431)
T KOG1240|consen 1337 E 1337 (1431)
T ss_pred             c
Confidence            3

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.37  E-value=2.9e-09  Score=107.34  Aligned_cols=315  Identities=13%  Similarity=0.151  Sum_probs=188.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEE----EcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIY----NCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ....+.|.++.|-++...|+.+..+| |.+.    +.+........    .-..+|.+++|+||...++-...+     +
T Consensus        72 ~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG----~vd~GI~a~~WSPD~Ella~vT~~-----~  142 (928)
T PF04762_consen   72 DDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG----SVDSGILAASWSPDEELLALVTGE-----G  142 (928)
T ss_pred             cCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE----EEcCcEEEEEECCCcCEEEEEeCC-----C
Confidence            34567999999999998888888666 7777    44433333222    355789999999998766655544     6


Q ss_pred             eEEEEeCC---------------C--------CceeEEee-------------------------cCCceEEEEEecCcc
Q 014007          157 KVMIWDDH---------------Q--------SRCIGELS-------------------------FRSEVRSVKLRRDRI  188 (432)
Q Consensus       157 ~v~iwd~~---------------~--------~~~~~~~~-------------------------~~~~v~~~~~~~~~~  188 (432)
                      ++.+.+-.               .        |+....|.                         ....-..++|..||.
T Consensus       143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~  222 (928)
T PF04762_consen  143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE  222 (928)
T ss_pred             EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence            77666410               0        11111110                         112345688999999


Q ss_pred             EEEe-------C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee----
Q 014007          189 IVVL-------E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM----  255 (432)
Q Consensus       189 ~~~~-------d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~----  255 (432)
                      +++.       +  ..++||+ +.|.....-+.-.+--..++|.|.|+.++.+-.-.....|.+|.-++-+...+.    
T Consensus       223 yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~  301 (928)
T PF04762_consen  223 YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFD  301 (928)
T ss_pred             EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCC
Confidence            9882       2  4799999 457655544433444457899999985543332223456677775553333332    


Q ss_pred             ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce--EEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEe
Q 014007          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNL  332 (432)
Q Consensus       256 ~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~  332 (432)
                      .....|..+.|++|+..||....|.  |.+|-..+..-  .+++... ....+..+.|+|.. ..|...+.+|.+..++.
T Consensus       302 ~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  302 PEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            3456899999999999999977665  99998777542  2333322 22345569999954 45667776677765554


Q ss_pred             c----CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          333 K----VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       333 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      .    .+......  ....+.+-.+..+.+ ..+.....-...+...+... ..|..++|++++..+++-..||.|.+|.
T Consensus       379 ~~~v~~s~~~~~~--D~g~vaVIDG~~lll-Tpf~~a~VPPPMs~~~l~~~-~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  379 AWDVSRSPGSSPN--DNGTVAVIDGNKLLL-TPFRRAVVPPPMSSYELELP-SPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             EEEEEecCCCCcc--CceEEEEEeCCeEEE-ecccccCCCchHhceEEcCC-CCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence            3    22211000  000000111111111 10000000011112233333 5799999999999899999999999999


Q ss_pred             ecCCC
Q 014007          409 FDPVN  413 (432)
Q Consensus       409 ~~~~~  413 (432)
                      ++...
T Consensus       455 ~~~~~  459 (928)
T PF04762_consen  455 WDLKN  459 (928)
T ss_pred             ecCCC
Confidence            87654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.35  E-value=9.4e-11  Score=105.86  Aligned_cols=207  Identities=13%  Similarity=0.121  Sum_probs=150.4

Q ss_pred             CCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee----cCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeecc
Q 014007          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA  214 (432)
Q Consensus       139 ~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  214 (432)
                      +...+++....|     |.+++||..+++....+.    ..+...+..|.     +..+..-.-|-        .+..  
T Consensus         3 ~~~~~~A~~~~~-----g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s~~k~~--------~~~~--   62 (541)
T KOG4547|consen    3 PALDYFALSTGD-----GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYSPMKWL--------SLEK--   62 (541)
T ss_pred             chhheEeecCCC-----CeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccchHHHH--------hHHH--
Confidence            344566777777     999999999998877776    24455555554     22211100000        0000  


Q ss_pred             CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee---eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC
Q 014007          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (432)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~---~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~  291 (432)
                          ....+.+  ..+++- |...|.|.+|++..+.+...   ..|.+.|.++.++.+-..|.+++.|+. +..|+..++
T Consensus        63 ----~~~~s~~--t~~lvl-gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~-v~~~~~~~~  134 (541)
T KOG4547|consen   63 ----AKKASLD--TSMLVL-GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLK-VVYILEKEK  134 (541)
T ss_pred             ----HhhccCC--ceEEEe-ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCcee-EEEEecccc
Confidence                0011122  223332 55789999999998777543   369999999999999999999999999 999999999


Q ss_pred             ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW  371 (432)
Q Consensus       292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (432)
                      +.++.++.  .+..+.+++.+|||..|++++  +.|++||+++.+.                                  
T Consensus       135 ~~~~~~~~--~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev----------------------------------  176 (541)
T KOG4547|consen  135 VIIRIWKE--QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV----------------------------------  176 (541)
T ss_pred             eeeeeecc--CCCccceEEEcCCCCEEEecc--ceEEEEEccCceE----------------------------------
Confidence            99998886  347799999999999999885  6899999999873                                  


Q ss_pred             eeEEEEecCCCceEEEEccC-----CCEEE-EEecCCeEEEEEecCC
Q 014007          372 SVAQFRLVEGSPYIVAFGHQ-----KNTVV-ILGMDGSFYRCQFDPV  412 (432)
Q Consensus       372 ~~~~~~~~~~~v~~~~~s~~-----~~~l~-~~~~dg~v~iw~~~~~  412 (432)
                       +.+|.+|.+.|+++.|..+     |.++. +...+..+.+|..+.+
T Consensus       177 -v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  177 -VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             -EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence             5578899999999999887     56555 4555677888988774

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.35  E-value=4.6e-09  Score=107.94  Aligned_cols=247  Identities=9%  Similarity=0.063  Sum_probs=153.8

Q ss_pred             EEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeec---------------CCceEEEEEecCccEEE-e---C
Q 014007          134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF---------------RSEVRSVKLRRDRIIVV-L---E  193 (432)
Q Consensus       134 ~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~-~---d  193 (432)
                      .+++++ ++.++++...+     +.|++||.. ++.+..+..               -....++++.+++..++ +   +
T Consensus       572 gvavd~~~g~lyVaDs~n-----~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n  645 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNH-----NRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN  645 (1057)
T ss_pred             eEEEECCCCeEEEEECCC-----CeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence            456665 45566666666     899999964 554443331               12357899998765433 3   4


Q ss_pred             CeEEEEEcCCCeeeEEEeec-----------------cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec
Q 014007          194 QKIFVYNFADLKLLHQIETI-----------------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA  256 (432)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~  256 (432)
                      +.|+++|+.++. +.++.+.                 -+.-..+++++++..++++.  ..++.|++||...+.+..+.+
T Consensus       646 ~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad--~~~~~I~v~d~~~g~v~~~~G  722 (1057)
T PLN02919        646 HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM--AGQHQIWEYNISDGVTRVFSG  722 (1057)
T ss_pred             ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE--CCCCeEEEEECCCCeEEEEec
Confidence            679999987754 3333210                 01123688999777777654  357899999988765544322


Q ss_pred             c---------------CCceeEEEEcCCCCEEE-EEcCCCceEEEEECCCCceEEEEEe-----------CCC-------
Q 014007          257 H---------------DSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGTLLQEVRR-----------GAD-------  302 (432)
Q Consensus       257 ~---------------~~~i~~~~~sp~~~~l~-~~~~dg~~i~vwd~~~~~~~~~~~~-----------~~~-------  302 (432)
                      .               -.....|+++|+|+.|+ +.+.++. |++||+.++.......+           +..       
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~  801 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV  801 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-EEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence            1               12356799999998554 5555677 99999987653211100           000       


Q ss_pred             -cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007          303 -RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG  381 (432)
Q Consensus       303 -~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (432)
                       -.....++++++|.++++-+.+++|++||..++...... +.                 ....+....    .....-.
T Consensus       802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~-----------------G~~G~~dG~----~~~a~l~  859 (1057)
T PLN02919        802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GT-----------------GKAGFKDGK----ALKAQLS  859 (1057)
T ss_pred             hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-cc-----------------CCcCCCCCc----ccccccC
Confidence             013468999999998888889999999999876521100 00                 000000000    0111123


Q ss_pred             CceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      ....++++++|+.+++-+.++.|++|+++..
T Consensus       860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        860 EPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            4678999999998888888999999987553

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=2.3e-09  Score=99.45  Aligned_cols=192  Identities=11%  Similarity=0.055  Sum_probs=128.3

Q ss_pred             eEEEEeeeCCeEE-Ee-cCC--CCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe------CCeEEEEE
Q 014007          131 GVVEMLFRCNILA-LV-GGG--PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYN  200 (432)
Q Consensus       131 ~v~~~~~~~~~~~-~~-s~~--~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------d~~i~i~d  200 (432)
                      ......|+|++.. ++ +..  ..     ..|+++|+.+++........+......|+|||..++.      +..|+++|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~-----~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERK-----PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCC-----CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence            6678889999863 33 222  23     6799999988876655556666777889999987762      35799999


Q ss_pred             cCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC-
Q 014007          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-  279 (432)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-  279 (432)
                      +.+++. ..+...........|+|||+.+++.+.......|.+.|+.++....+......  ...|+|||++|+..+.. 
T Consensus       264 l~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~  340 (419)
T PRK04043        264 TNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRET  340 (419)
T ss_pred             CCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCC
Confidence            877754 33433333234568999999998876332334788888888766554332222  24899999988876643 


Q ss_pred             --------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-C--eEEEEEecCC
Q 014007          280 --------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-G--TVHVFNLKVN  335 (432)
Q Consensus       280 --------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~  335 (432)
                              .. |.+.|+.++... .+...   .......|+|||+.|+..+.+ +  .+.+.++...
T Consensus       341 ~~~~~~~~~~-I~v~d~~~g~~~-~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        341 NNEFGKNTFN-LYLISTNSDYIR-RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CcccCCCCcE-EEEEECCCCCeE-ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence                    25 888998887653 34322   223358999999988766532 2  3666666553

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.31  E-value=1.4e-08  Score=104.44  Aligned_cols=239  Identities=10%  Similarity=0.109  Sum_probs=152.0

Q ss_pred             EEEEEcCCC-CEEEEEcCCc-EEEEEcCCCeeEEEeecc-c---------CcceeEEEEeeeCCeE-EEecCCCCCCCCC
Q 014007           89 LHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDFE-R---------GGGIGVVEMLFRCNIL-ALVGGGPDPQYPL  155 (432)
Q Consensus        89 ~~~~~s~~~-~~l~~~~~~~-i~iw~~~~~~~~~~~~~~-~---------~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~  155 (432)
                      ..+++++++ +++++-..+. |++||.+........... .         ..-..-..+++++++. ++++...+     
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n-----  645 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN-----  645 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC-----
Confidence            457888764 4555544444 999997644322111100 0         0012246677877654 34444444     


Q ss_pred             CeEEEEeCCCCceeEEeec------------------CCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEEeec
Q 014007          156 NKVMIWDDHQSRCIGELSF------------------RSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETI  213 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~  213 (432)
                      +.|+++|..++. +.++..                  -....++++++ ++.+.++   ++.|++||..++... .+.+.
T Consensus       646 ~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~  723 (1057)
T PLN02919        646 HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGD  723 (1057)
T ss_pred             ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecC
Confidence            789999987654 333210                  12346799999 4555443   578999998776542 22111


Q ss_pred             ---------------cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec--------------c-------
Q 014007          214 ---------------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--------------H-------  257 (432)
Q Consensus       214 ---------------~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------------~-------  257 (432)
                                     ......++++|+++.++++-  ..++.|++||+.++....+.+              +       
T Consensus       724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~  801 (1057)
T PLN02919        724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV  801 (1057)
T ss_pred             CccccCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence                           01223589999998887764  467899999988754322110              0       


Q ss_pred             -CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC-----------CcCceEEEEECCCCCEEEEEeCCC
Q 014007          258 -DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSSDKG  325 (432)
Q Consensus       258 -~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~dg  325 (432)
                       -.....++++++|+++++-..++. |++||..++........+.           .-.....++++++|+++++-+.++
T Consensus       802 ~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn  880 (1057)
T PLN02919        802 LLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS  880 (1057)
T ss_pred             hccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence             112468999999998888888888 9999988876654332110           112567899999999888888999


Q ss_pred             eEEEEEecCCCC
Q 014007          326 TVHVFNLKVNSG  337 (432)
Q Consensus       326 ~i~iwd~~~~~~  337 (432)
                      +|++||+.+++.
T Consensus       881 ~Irvid~~~~~~  892 (1057)
T PLN02919        881 LIRYLDLNKGEA  892 (1057)
T ss_pred             EEEEEECCCCcc
Confidence            999999988764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.30  E-value=2e-09  Score=95.71  Aligned_cols=236  Identities=9%  Similarity=0.107  Sum_probs=159.5

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe--EEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI--LALVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      -+.|+-+.+++|--..+.+.|+++ +.... ...+..-....+..+.++|.+  ..++.-.-...-.++.+++|.+..+.
T Consensus       136 ~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s  213 (561)
T COG5354         136 VLKFSIDDKYVARVVGSSLYIHEI-TDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS  213 (561)
T ss_pred             eeeeeecchhhhhhccCeEEEEec-CCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence            567787777766555566888886 22211 122211134667788888762  22222111111123899999998877


Q ss_pred             eeEEee-cCCceEEEEEecCccEEEe--------------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          168 CIGELS-FRSEVRSVKLRRDRIIVVL--------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       168 ~~~~~~-~~~~v~~~~~~~~~~~~~~--------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      .+.+-. ..-.=..+.|.+.|.+++.              ...++|++++.... .......++|..++|.|.++.+.++
T Consensus       214 ~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi  292 (561)
T COG5354         214 VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVI  292 (561)
T ss_pred             eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEE
Confidence            766655 4444457889998887762              35788999874333 2222557899999999999998776


Q ss_pred             eecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEE-EEEeCCCcCceEE
Q 014007          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQ-EVRRGADRAEIYS  308 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~-~~~~~~~~~~i~~  308 (432)
                      + |..+..+.++|+++....  ...+..=..+.|+|.+++++.++.|   |. |-+||........ .+.+    ....-
T Consensus       293 ~-g~~pa~~s~~~lr~Nl~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~~~~~----~n~s~  364 (561)
T COG5354         293 S-GYMPASVSVFDLRGNLRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAGAFNG----LNTSY  364 (561)
T ss_pred             e-cccccceeecccccceEE--ecCCcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEEEeec----CCceE
Confidence            4 778999999999988333  3334445678899999999997765   56 9999976654443 5553    34566


Q ss_pred             EEECCCCCEEEEEe------CCCeEEEEEecCCC
Q 014007          309 LAFSSNAQWLAVSS------DKGTVHVFNLKVNS  336 (432)
Q Consensus       309 ~~~s~~~~~l~~~~------~dg~i~iwd~~~~~  336 (432)
                      +.|+||++++.+..      .|+.|.|||+....
T Consensus       365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             eeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            78999999988764      47889999997755

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.30  E-value=5e-09  Score=92.46  Aligned_cols=184  Identities=10%  Similarity=0.153  Sum_probs=132.8

Q ss_pred             eCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-----c--------CCceEEEE-Eec-CccEEE--eCCeEEEEE
Q 014007          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-----F--------RSEVRSVK-LRR-DRIIVV--LEQKIFVYN  200 (432)
Q Consensus       138 ~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-----~--------~~~v~~~~-~~~-~~~~~~--~d~~i~i~d  200 (432)
                      +.+|..++-...      |.|++||..+.+.. .+.     .        -.+..-+. |+. +|.+++  +.|...|.+
T Consensus       275 nsDGkrIvFq~~------GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~  347 (668)
T COG4946         275 NSDGKRIVFQNA------GDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMR  347 (668)
T ss_pred             CCCCcEEEEecC------CcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEEC
Confidence            445555444332      78999997765422 221     0        01111111 222 455554  588888888


Q ss_pred             cCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC-cEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG-QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (432)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (432)
                      ...+-.++.  .+...|.-..+.-+++..++++   .|| .+-|+|.++++++.+...-+.|.++..+|+|++++.+...
T Consensus       348 ~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt---~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr  422 (668)
T COG4946         348 PWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGT---NDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDR  422 (668)
T ss_pred             CCCCeeEEc--CCCCceEEEEEccCCcceEEec---cCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCc
Confidence            766655543  3556677778888888665543   677 8999999999999999999999999999999999999988


Q ss_pred             CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC----eEEEEEecCCC
Q 014007          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG----TVHVFNLKVNS  336 (432)
Q Consensus       280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~  336 (432)
                      .. |.+.|+.+++....-+  ...+-|+.+.|||+++++|-+--+|    .|++||+.+++
T Consensus       423 ~e-l~vididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         423 FE-LWVIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             eE-EEEEEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence            88 9999999997654333  2457899999999999999776554    69999999987

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=2.2e-11  Score=122.39  Aligned_cols=192  Identities=13%  Similarity=0.091  Sum_probs=150.4

Q ss_pred             eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEE---eCCeEEEEEcCCC
Q 014007          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL  204 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~  204 (432)
                      ..+..|.-+|...+.++|+.|     |.|++|....++.+..+.  ....|+.+.|+.+|....   .||.+.+|.+. .
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~d-----gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQD-----GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             CceeeecCCCCCceEEecCCC-----ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            345566667778888999999     999999999998888887  568899999999887665   38999999986 5


Q ss_pred             eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc--eeeeeccCCceeEEEEcCCCCEEEEEcCCCce
Q 014007          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTL  282 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~  282 (432)
                      ++....+.|......+.|-.  ..++-+-....++.+.+||.....  -..-..|.+.++++++-|.-+.|++|+.+|. 
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~- 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE- 2359 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc-
Confidence            66666677776666666655  222222223478999999976532  2223789999999999999999999999999 


Q ss_pred             EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCC
Q 014007          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (432)
Q Consensus       283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  342 (432)
                      |++||++..++++.++.           +. ...++++|+..|.++||++.....++.++
T Consensus      2360 v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            99999999988877762           33 55789999999999999999887665554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.29  E-value=7.5e-10  Score=100.15  Aligned_cols=184  Identities=14%  Similarity=0.107  Sum_probs=135.2

Q ss_pred             CCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEee------eC--------------CeEEEecCCCCCCC
Q 014007           95 QDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF------RC--------------NILALVGGGPDPQY  153 (432)
Q Consensus        95 ~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~------~~--------------~~~~~~s~~~d~~~  153 (432)
                      |-+.++|....+| ++||+...++......-...-....++..|      +|              +...++-|...   
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~---   79 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ---   79 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC---
Confidence            4456888887555 999999877654221110011222222222      22              34455656655   


Q ss_pred             CCCeEEEEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007          154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                        |.|.+|++..|+....+.   |.+.|.++.++.+-..+.+   |..+..|+....+.+..+......+..++++||+.
T Consensus        80 --g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   80 --GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             --ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence              999999999999888887   8999999999988777774   78999999999999999988888889999999987


Q ss_pred             cEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCC-----CCEEEEEc-CCCceEEEEECC
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-----GQLLATSS-TKGTLVRIFNTL  289 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~-----~~~l~~~~-~dg~~i~vwd~~  289 (432)
                      .+++++     +.|++||+.+++ +..+.+|.++|.++.|--+     |.+++++. .+.. |.+|-+.
T Consensus       158 ~l~~as-----~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~  220 (541)
T KOG4547|consen  158 ILLTAS-----RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVE  220 (541)
T ss_pred             EEEecc-----ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEE
Confidence            655433     899999999965 5678999999999999876     66666544 3444 7777554

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.26  E-value=2.3e-10  Score=96.62  Aligned_cols=257  Identities=11%  Similarity=0.142  Sum_probs=157.2

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-----eeEEee-c------------CCceEEEEEecCccE
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELS-F------------RSEVRSVKLRRDRII  189 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-----~~~~~~-~------------~~~v~~~~~~~~~~~  189 (432)
                      ...-+.++.|...|..|++|+.+     |.|.++.-....     ....++ |            ...|..+.|.+++..
T Consensus        24 eadiis~vef~~~Ge~LatGdkg-----GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~   98 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKG-----GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL   98 (433)
T ss_pred             hhcceeeEEeecccceEeecCCC-----CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence            44556788899999999999999     999999643221     112221 2            356889999887643


Q ss_pred             ---EEe--CCeEEEEEcCCCeeeE--------------------EE----------------eeccCCcceEEEecCCCc
Q 014007          190 ---VVL--EQKIFVYNFADLKLLH--------------------QI----------------ETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       190 ---~~~--d~~i~i~d~~~~~~~~--------------------~~----------------~~~~~~~~~~~~~~~~~~  228 (432)
                         +++  |.+|++|.+.......                    .+                ..|.-.++++.++.|.+.
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence               332  8899999876421100                    00                112333456677777665


Q ss_pred             EEEEeecCCCCcEEEEEccC--Cc--eeeeec-----cCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCce-----
Q 014007          229 LVLVCPGLQKGQVRVEHYAS--KR--TKFIMA-----HDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTL-----  293 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~--~~--~~~~~~-----~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~-----  293 (432)
                      ++ .   ..|=.|.+|++.-  +.  +.-++.     -..-|++..|+|. -+.++-.+..|+ |++-|++...+     
T Consensus       179 ~l-S---ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR~~aLCd~hs  253 (433)
T KOG1354|consen  179 FL-S---ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMRQSALCDAHS  253 (433)
T ss_pred             Ee-e---ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeechhhhhhcchh
Confidence            43 2   2688999999875  21  122222     2346899999994 567888888999 99999984311     


Q ss_pred             -EEEEEe-CC-------CcCceEEEEECCCCCEEEEEeCCCeEEEEEecC-CCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007          294 -LQEVRR-GA-------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV-NSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (432)
Q Consensus       294 -~~~~~~-~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                       +..... +.       --..|..+.|+++|+|+++-. --+|++||+.. .+++...+-|.            +++..+
T Consensus       254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~------------~lr~kL  320 (433)
T KOG1354|consen  254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHE------------YLRSKL  320 (433)
T ss_pred             hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehH------------hHHHHH
Confidence             111110 00       014688999999999998864 36899999954 33332221110            000000


Q ss_pred             cceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCC
Q 014007          364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGG  415 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~  415 (432)
                      -......--+        .-..++|+.++..+++|+....+++|+++....+
T Consensus       321 c~lYEnD~If--------dKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  321 CSLYENDAIF--------DKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             HHHhhccchh--------heeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence            0000000000        1235889999999999999999999987664433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.25  E-value=7.7e-08  Score=83.43  Aligned_cols=220  Identities=15%  Similarity=0.090  Sum_probs=143.4

Q ss_pred             EEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEe-cCccEEEe-CCeEEEEEcCCCeeeEEE
Q 014007          134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR-RDRIIVVL-EQKIFVYNFADLKLLHQI  210 (432)
Q Consensus       134 ~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~-d~~i~i~d~~~~~~~~~~  210 (432)
                      ...|.+ ++.++++.-..     +.|+.|+..+++. ..+.... ..++++. +++.+++. .+.+.++|+.+++.....
T Consensus         4 gp~~d~~~g~l~~~D~~~-----~~i~~~~~~~~~~-~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPG-----GRIYRVDPDTGEV-EVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTT-----TEEEEEETTTTEE-EEEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCC-----CEEEEEECCCCeE-EEEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEe
Confidence            456776 66666666555     8999999877654 3344333 7777887 78877774 667788899888655444


Q ss_pred             ee-----ccCCcceEEEecCCCcEEEEeecCCC------CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEE-EEcC
Q 014007          211 ET-----IANPKGLCAVSQGVGSLVLVCPGLQK------GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA-TSST  278 (432)
Q Consensus       211 ~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d------~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~~  278 (432)
                      ..     .....+.+++.++|+ +++...+...      |.|..++.. +....+...-...+.|+|+|+++.|+ +-+.
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred             eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc
Confidence            43     123345688999987 5555433211      567777777 55555555556678999999999776 4556


Q ss_pred             CCceEEEEECCCCc--e--EEEE-EeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007          279 KGTLVRIFNTLDGT--L--LQEV-RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT  353 (432)
Q Consensus       279 dg~~i~vwd~~~~~--~--~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (432)
                      .+. |..+++....  .  ...+ ......+..-.+++..+|++.++....+.|.++|.+ ++.                
T Consensus       155 ~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~----------------  216 (246)
T PF08450_consen  155 NGR-IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL----------------  216 (246)
T ss_dssp             TTE-EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE----------------
T ss_pred             cce-eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE----------------
Confidence            666 8988885322  1  1222 211111247889999999988887789999999987 552                


Q ss_pred             CCceeEeecccceeecceeeEEEEecCCCceEEEEc-cCCCEEEEEe
Q 014007          354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG-HQKNTVVILG  399 (432)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  399 (432)
                                         +..+..+...++.++|. ++.+.|++.+
T Consensus       217 -------------------~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  217 -------------------LREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -------------------EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             -------------------EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence                               33455555578999994 6767776554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.24  E-value=1.8e-08  Score=93.46  Aligned_cols=265  Identities=15%  Similarity=0.173  Sum_probs=156.3

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (432)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~  175 (432)
                      +..+.+++ ++.|..+|..+++......+.....   ...... ++..++ ++.+     +.++.+|..+|+.+......
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~v~-~~~v~v-~~~~-----g~l~ald~~tG~~~W~~~~~  134 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVGAD-GGLVFV-GTEK-----GEVIALDAEDGKELWRAKLS  134 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceEEc-CCEEEE-EcCC-----CEEEEEECCCCcEeeeeccC
Confidence            44566665 4559999988888876666542111   112222 333333 3445     89999999999998877754


Q ss_pred             CceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCc-----ceEEEecCCCcEEEEeecCCCCcEEEEEccC
Q 014007          176 SEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (432)
Q Consensus       176 ~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~  248 (432)
                      ..+.+.....++.+++  .++.|+.||.++|+.+..+.......     ....+. + +.+++   +..++.+..+|..+
T Consensus       135 ~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~---~~~~g~v~ald~~t  209 (377)
T TIGR03300       135 SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLV---GFAGGKLVALDLQT  209 (377)
T ss_pred             ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEE---ECCCCEEEEEEccC
Confidence            4444322223455554  38899999999998877765432211     111111 2 33332   34678999999887


Q ss_pred             Cceeeeecc--CC------ceeEEEEcC--CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE
Q 014007          249 KRTKFIMAH--DS------RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (432)
Q Consensus       249 ~~~~~~~~~--~~------~i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  318 (432)
                      +...-....  ..      .+..+.-+|  .+..+++++.+|. ++.||..+++.+......    ....+.  .++..+
T Consensus       210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~v  282 (377)
T TIGR03300       210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDAS----SYQGPA--VDDNRL  282 (377)
T ss_pred             CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccC----CccCce--EeCCEE
Confidence            654321110  00      000111111  3457788888999 999999999887666521    112222  245678


Q ss_pred             EEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE
Q 014007          319 AVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL  398 (432)
Q Consensus       319 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  398 (432)
                      +.++.+|.|+.+|..+++.+..                                ...+.  .........  .+..|+++
T Consensus       283 yv~~~~G~l~~~d~~tG~~~W~--------------------------------~~~~~--~~~~ssp~i--~g~~l~~~  326 (377)
T TIGR03300       283 YVTDADGVVVALDRRSGSELWK--------------------------------NDELK--YRQLTAPAV--VGGYLVVG  326 (377)
T ss_pred             EEECCCCeEEEEECCCCcEEEc--------------------------------ccccc--CCccccCEE--ECCEEEEE
Confidence            8888999999999998873211                                10010  011111121  46788999


Q ss_pred             ecCCeEEEEEecCCCCCcceEee
Q 014007          399 GMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       399 ~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                      +.+|.|++++  ..+|+.+.+.+
T Consensus       327 ~~~G~l~~~d--~~tG~~~~~~~  347 (377)
T TIGR03300       327 DFEGYLHWLS--REDGSFVARLK  347 (377)
T ss_pred             eCCCEEEEEE--CCCCCEEEEEE
Confidence            9999999865  56677666554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=3.5e-09  Score=95.11  Aligned_cols=237  Identities=11%  Similarity=0.165  Sum_probs=166.2

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCcee
Q 014007           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~  169 (432)
                      -..||-|++++|.-..++|.||+.......-.+.+   .-..|..+.|+|.+..||--.......+..+.+..+.+++.+
T Consensus       310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl---ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i  386 (698)
T KOG2314|consen  310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL---KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI  386 (698)
T ss_pred             eEEeccCCceeEEeccceEEEEecCceeeeccccc---CCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence            36899999999999889999999876555443444   556788899999988888655443344577888888888887


Q ss_pred             EEee-cCCceEEEEEecCccEEEe--C--------C---eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007          170 GELS-FRSEVRSVKLRRDRIIVVL--E--------Q---KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       170 ~~~~-~~~~v~~~~~~~~~~~~~~--d--------~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      ++.. +.-.=..+.|-.+|.+++.  |        |   .+.|+.++........-.....+-.++|.|.|+.+.++.+.
T Consensus       387 Rt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~  466 (698)
T KOG2314|consen  387 RTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN  466 (698)
T ss_pred             eeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc
Confidence            7766 4444455778888998883  1        1   35566665543322222345567789999999999888766


Q ss_pred             CCCCcEEEEEccCC--c---eeeeeccCCceeEEEEcCCCCEEEEEc---CCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          236 LQKGQVRVEHYASK--R---TKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       236 ~~d~~i~i~d~~~~--~---~~~~~~~~~~i~~~~~sp~~~~l~~~~---~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      ....++.+|.+.+.  .   +..+.  ....+.+.|+|.|++++.+.   ..|. +.++|+.-..+..+-.. .| ...+
T Consensus       467 ~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~-l~F~D~~~a~~k~~~~~-eh-~~at  541 (698)
T KOG2314|consen  467 TVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGD-LEFYDTDYADLKDTASP-EH-FAAT  541 (698)
T ss_pred             ccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccc-eEEEecchhhhhhccCc-cc-cccc
Confidence            66788999988741  1   22222  25567899999999988764   4677 99999864232222111 13 4578


Q ss_pred             EEEECCCCCEEEEEeC------CCeEEEEEecC
Q 014007          308 SLAFSSNAQWLAVSSD------KGTVHVFNLKV  334 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~------dg~i~iwd~~~  334 (432)
                      .+.|.|.|+|+.+++.      |.--+||+.+.
T Consensus       542 ~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  542 EVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             cceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            8999999999999874      45577888765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.22  E-value=1.4e-09  Score=92.00  Aligned_cols=199  Identities=12%  Similarity=0.192  Sum_probs=139.6

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      .+...-+.+++++.+.++.+.|.+|-+++ +.-+.+..  .+....+... .|...+..+.|+-....+++.+.|     
T Consensus        62 sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~d-----  135 (404)
T KOG1409|consen   62 SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKD-----  135 (404)
T ss_pred             hhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccc-----
Confidence            34445578999999999999999999777 77776532  2222223333 688999999999888899999887     


Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEc--CCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      ..+.---.+.+..+..+.......++.+.-.  +...   .|.|.+..+  ..-.++..+.+|.+.+.+.+|.+....++
T Consensus       136 k~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~Lf  213 (404)
T KOG1409|consen  136 KQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLF  213 (404)
T ss_pred             cceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEE
Confidence            5544333445555544443333333333222  2221   344444433  34566788889999998899888765443


Q ss_pred             EEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007          231 LVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~  289 (432)
                         +|..|..+.+||+..  +....+.+|...|..+..-+--+.|.+++.||. |.+||+.
T Consensus       214 ---Sg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn  270 (404)
T KOG1409|consen  214 ---SGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMN  270 (404)
T ss_pred             ---eccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEecc
Confidence               466899999999987  445667899999999998888889999999999 9999983

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.22  E-value=1.6e-08  Score=89.37  Aligned_cols=173  Identities=14%  Similarity=0.017  Sum_probs=124.1

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC-eEEEEeCCCCceeEEeec
Q 014007           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN-KVMIWDDHQSRCIGELSF  174 (432)
Q Consensus        96 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~-~v~iwd~~~~~~~~~~~~  174 (432)
                      +|.+++..+.+..-|.+...+-.   ..+  ++...|.-..+..+...++.|..|     | .+-|+|..+++..+....
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~---iqv--~~~~~VrY~r~~~~~e~~vigt~d-----gD~l~iyd~~~~e~kr~e~~  400 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYS---IQV--GKKGGVRYRRIQVDPEGDVIGTND-----GDKLGIYDKDGGEVKRIEKD  400 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCee---EEc--CCCCceEEEEEccCCcceEEeccC-----CceEEEEecCCceEEEeeCC
Confidence            67888888887766655432221   223  355556666666555566666666     6 899999888776655557


Q ss_pred             CCceEEEEEecCccEEE-eC--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee-cCCCCcEEEEEccCCc
Q 014007          175 RSEVRSVKLRRDRIIVV-LE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKR  250 (432)
Q Consensus       175 ~~~v~~~~~~~~~~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~  250 (432)
                      -+.|.++..+++|++++ ++  ..|.++|+.+++....=+...+-+..+.|+|+++.++.+.. |.....|+++|+.+++
T Consensus       401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence            89999999999999777 43  36777789888765443445567788999999987766542 3345789999999988


Q ss_pred             eeeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007          251 TKFIMAHDSRIACFALTQDGQLLATSST  278 (432)
Q Consensus       251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (432)
                      +.......+.=.+-+|.|++++|.--+.
T Consensus       481 iy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         481 IYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             EEEecCCcccccCcccCCCCcEEEEEec
Confidence            8776666666667889999998876554

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=1.1e-10  Score=107.86  Aligned_cols=290  Identities=11%  Similarity=0.097  Sum_probs=192.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC---eEEEecCCCCCCCCCCeEEE
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~~~~~~v~i  160 (432)
                      -...+..+..+|.|+-+|.++..++.+.|++..-... +-+..-..-.+....|++.   -..+++.+.      ..-.+
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~pp-r~l~h~tpw~vad~qws~h~a~~~wiVsts~------qkaii   95 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPP-RWLHHITPWQVADVQWSPHPAKPYWIVSTSN------QKAII   95 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCc-eeeeccCcchhcceecccCCCCceeEEecCc------chhhh
Confidence            4567888999999999999999998888885322111 1111012233444445442   344555544      56778


Q ss_pred             EeCCCC--ceeEEee--cCCceEEEEEecCccEEE----eCCeEEEEEcCCC-eeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          161 WDDHQS--RCIGELS--FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       161 wd~~~~--~~~~~~~--~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      |++...  +.+.-+.  |...|+++.|+++..-+.    .|..+..||++.. .++..+.........+.|+.....++ 
T Consensus        96 wnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl-  174 (1081)
T KOG0309|consen   96 WNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL-  174 (1081)
T ss_pred             hhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh-
Confidence            987643  2333332  888999999999765544    3889999999874 44555555556667789988766654 


Q ss_pred             EeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCce--EEEEEeCCCcCce
Q 014007          232 VCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEI  306 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~--~~~~~~~~~~~~i  306 (432)
                      +.  +....|.+||++.  ..+..+++|...|+.++|.. ....+.+++.|++ |++||......  .+.+.   ...+|
T Consensus       175 as--shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~vt---t~~pi  248 (1081)
T KOG0309|consen  175 AS--SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTVT---TNFPI  248 (1081)
T ss_pred             hh--ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceecc---ccCcc
Confidence            33  3668899999987  45667888999999999875 3346789999999 99999865432  22333   34678


Q ss_pred             EEEEECCCCCEEEEE--eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007          307 YSLAFSSNAQWLAVS--SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (432)
Q Consensus       307 ~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  384 (432)
                      +.-.+-|-|.-.+.-  -.++.+.+++.++.....                         ..+.....+.++.+|.+.|.
T Consensus       249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~-------------------------n~~~~~~pVh~F~GH~D~V~  303 (1081)
T KOG0309|consen  249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEW-------------------------NVFDLNTPVHTFVGHDDVVL  303 (1081)
T ss_pred             eeccccccCceeEeccccCCeeeeeccccchhhhh-------------------------ccccCCcceeeecCcchHHH
Confidence            888888865533322  123466666665543211                         11222334778999998887


Q ss_pred             EEEEccCCC----------EEEEEecCCeEEEEEecCC
Q 014007          385 IVAFGHQKN----------TVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       385 ~~~~s~~~~----------~l~~~~~dg~v~iw~~~~~  412 (432)
                      ..-|-..+.          .|++-+.|..+++|.++.+
T Consensus       304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             HHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            766654222          5999999999999998763

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.21  E-value=4.3e-08  Score=90.89  Aligned_cols=217  Identities=18%  Similarity=0.165  Sum_probs=129.9

Q ss_pred             CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEE-EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee
Q 014007           96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVE-MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (432)
Q Consensus        96 ~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~  173 (432)
                      ++..+++++ ++.+..+|.++++......+.  .  .+.. .... ++..++. ..+     +.|+.||.++|+.+.++.
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~--~~~~~p~v~-~~~v~v~-~~~-----g~l~a~d~~tG~~~W~~~  172 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--S--EVLSPPLVA-NGLVVVR-TND-----GRLTALDAATGERLWTYS  172 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--c--eeecCCEEE-CCEEEEE-CCC-----CeEEEEEcCCCceeeEEc
Confidence            345566665 555999998888877655443  1  1211 1222 3344443 334     899999999999888876


Q ss_pred             cCCceEE------EEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccC----C------c-ceEEEecCCCcEEEEee
Q 014007          174 FRSEVRS------VKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIAN----P------K-GLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       174 ~~~~v~~------~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~----~------~-~~~~~~~~~~~~~~~~~  234 (432)
                      ...+...      .... ++.+++  .++.+..+|.++|+.+........    .      + ....+  .++.+++.  
T Consensus       173 ~~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~--  247 (377)
T TIGR03300       173 RVTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAV--  247 (377)
T ss_pred             cCCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEE--
Confidence            4332211      1222 344444  368999999999887654432110    0      0 01111  23444443  


Q ss_pred             cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC
Q 014007          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  314 (432)
                       +.+|.+..+|..+++..-...... .....  ..+..+++++.+|. |..+|..+++.+....... .....+...  .
T Consensus       248 -~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~  319 (377)
T TIGR03300       248 -SYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVTDADGV-VVALDRRSGSELWKNDELK-YRQLTAPAV--V  319 (377)
T ss_pred             -EcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEECCCCe-EEEEECCCCcEEEcccccc-CCccccCEE--E
Confidence             267999999998865433222211 11222  24667888889999 9999999998876653211 112222222  4


Q ss_pred             CCEEEEEeCCCeEEEEEecCCC
Q 014007          315 AQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       315 ~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +..|++++.+|.|+++|..+++
T Consensus       320 g~~l~~~~~~G~l~~~d~~tG~  341 (377)
T TIGR03300       320 GGYLVVGDFEGYLHWLSREDGS  341 (377)
T ss_pred             CCEEEEEeCCCEEEEEECCCCC
Confidence            5688899999999999999887

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.19  E-value=1.1e-07  Score=96.13  Aligned_cols=283  Identities=13%  Similarity=0.160  Sum_probs=167.6

Q ss_pred             CCCeEEEEEcCCCCEEE--EEcCCc---EEEEEcCCCe-eEEEeecc----cCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007           85 PPTLLHISFNQDHGCFA--AGTDHG---FRIYNCDPFR-EIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~--~~~~~~---i~iw~~~~~~-~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (432)
                      ...+...+|.+....+.  .+....   |.+....... ......+.    ......|.++.|-++...++.+..+    
T Consensus        21 ~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~----   96 (928)
T PF04762_consen   21 DLPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALAS----   96 (928)
T ss_pred             ccccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECC----
Confidence            34667778877665433  332222   3443332221 11112221    1355789999998876555555444    


Q ss_pred             CCeEEEE----eCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeee--------------------
Q 014007          155 LNKVMIW----DDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLL--------------------  207 (432)
Q Consensus       155 ~~~v~iw----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~--------------------  207 (432)
                       |.|.+.    +..+......=.....|.+++||||+.+++.   ++++.+.+- +..++                    
T Consensus        97 -Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGW  174 (928)
T PF04762_consen   97 -GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGW  174 (928)
T ss_pred             -ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeecc
Confidence             889888    5444432222226889999999999988873   566666541 21111                    


Q ss_pred             ----EEEee------------------------ccCCcceEEEecCCCcEEEEeecCC---CCcEEEEEccCCceeeeec
Q 014007          208 ----HQIET------------------------IANPKGLCAVSQGVGSLVLVCPGLQ---KGQVRVEHYASKRTKFIMA  256 (432)
Q Consensus       208 ----~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~  256 (432)
                          ..|++                        ..+.-..++|..||.++++.+....   -..++||+-++....+-..
T Consensus       175 GkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~  254 (928)
T PF04762_consen  175 GKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEP  254 (928)
T ss_pred             CcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEecccc
Confidence                11110                        0111224566666665554433112   3688999876432222233


Q ss_pred             cCCceeEEEEcCCCCEEEEEcC---CCceEEEEECCCCceEEEEEeC--CCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007          257 HDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       257 ~~~~i~~~~~sp~~~~l~~~~~---dg~~i~vwd~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  331 (432)
                      -.+--.+++|.|.|+++|+...   ... |.+|. ++|-.-..|...  .....|..+.|++|+..||....|. |.+|-
T Consensus       255 v~gLe~~l~WrPsG~lIA~~q~~~~~~~-VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt  331 (928)
T PF04762_consen  255 VDGLEGALSWRPSGNLIASSQRLPDRHD-VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT  331 (928)
T ss_pred             CCCccCCccCCCCCCEEEEEEEcCCCcE-EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence            3344467899999999988765   234 88887 677655555543  2346799999999999999987665 99999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC-CCceEEEEcc-CCCEEEEEecCCeEEEEEe
Q 014007          332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGH-QKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~  409 (432)
                      ..+..                            .|..+     .+.... ..+..+.|+| +...|...+.+|.+..+++
T Consensus       332 ~~NYH----------------------------WYLKq-----ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  332 RSNYH----------------------------WYLKQ-----EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             eeCCE----------------------------EEEEE-----EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            98875                            11111     122222 2345599999 5566888888787766554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.16  E-value=4.9e-09  Score=86.93  Aligned_cols=176  Identities=11%  Similarity=0.110  Sum_probs=119.1

Q ss_pred             CeEEEEeCCCCceeE--Eee--cCCceEEEEEec---CccEEE----eCCeEEEEEcCCCeeeEEEeeccC------Ccc
Q 014007          156 NKVMIWDDHQSRCIG--ELS--FRSEVRSVKLRR---DRIIVV----LEQKIFVYNFADLKLLHQIETIAN------PKG  218 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~--~~~--~~~~v~~~~~~~---~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~------~~~  218 (432)
                      |.+.+|++...+.+.  ++.  ....+..+.|..   ++.+..    +.|.|.++..........+++...      ..-
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l  125 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL  125 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence            778888877665433  222  455667777763   344222    478888887655443333332211      122


Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccC---CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECC-CCce
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTL-DGTL  293 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~-~~~~  293 (432)
                      ++.|++.+..+++   +..+|.+.+.+...   ..++.++.|+-.+.-..|+. +.+++.+|+.|+. +..||++ .++.
T Consensus       126 slD~~~~~~~i~v---s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p~~~  201 (339)
T KOG0280|consen  126 SLDISTSGTKIFV---SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIPKTF  201 (339)
T ss_pred             EEEeeccCceEEE---EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCCcce
Confidence            4567777776543   34678888655544   34456889999999999976 4578999999999 9999999 3444


Q ss_pred             EEEEEeCCCcCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCC
Q 014007          294 LQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       294 ~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +..-. ..|...|.+|.-+| .+.+|++|+.|..|++||.++..
T Consensus       202 i~~n~-kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~  244 (339)
T KOG0280|consen  202 IWHNS-KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG  244 (339)
T ss_pred             eeecc-eeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence            43311 13668899998876 57799999999999999999644

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.14  E-value=1.3e-09  Score=104.86  Aligned_cols=173  Identities=13%  Similarity=0.159  Sum_probs=136.8

Q ss_pred             CeEEEEeCCCCceeEEeecCCceE-----EEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVR-----SVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                      +.+.+||...+.....+.+.....     -+.++++..++++   -+.|.+|+....+....+.+|.+.+..+.++-+|.
T Consensus       109 ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~  188 (967)
T KOG0974|consen  109 NSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR  188 (967)
T ss_pred             ceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCc
Confidence            789999988877777666544322     2234556666663   68999999874444446788999999999999998


Q ss_pred             cEEEEeecCCCCcEEEEEccCCcee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~  305 (432)
                      +++.++   +|..+++|++++.+..  ...+|...|..+.|+|+  ++++++.|.+ .++|+. +++.+.++..| ....
T Consensus       189 ~i~s~S---dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~-~~~~l~~y~~h-~g~~  260 (967)
T KOG0974|consen  189 YIASVS---DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGV-NGTQLEVYDEH-SGKG  260 (967)
T ss_pred             EEEEEe---cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEec-ccceehhhhhh-hhcc
Confidence            766543   8999999999985543  56789999999999998  8999999999 999974 56666677765 3467


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      |..++..++...+++++.|+.+++||+....
T Consensus       261 iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  261 IWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             eeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            9999999999999999999999999987644

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=1.9e-10  Score=103.03  Aligned_cols=274  Identities=15%  Similarity=0.160  Sum_probs=175.8

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC-------ceeEEee-cCCceEEEEEecCccEEEe-
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRIIVVL-  192 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~-  192 (432)
                      ..+. +|...|..+.--.+...+++++.|     ++|++|.++..       .+..++. |+.+|.++.|-.+.+++++ 
T Consensus       729 ~nf~-GH~~~iRai~AidNENSFiSASkD-----KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc  802 (1034)
T KOG4190|consen  729 CNFT-GHQEKIRAIAAIDNENSFISASKD-----KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC  802 (1034)
T ss_pred             eccc-CcHHHhHHHHhcccccceeeccCC-----ceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence            4454 788888888877788889999999     99999998642       2555666 9999999999999998885 


Q ss_pred             CCeEEEEEcCCCeeeEEEee--ccCCcceEEEecC-CCcEEEEeecCCCCcEEEEEccCCce-eee-----eccCCceeE
Q 014007          193 EQKIFVYNFADLKLLHQIET--IANPKGLCAVSQG-VGSLVLVCPGLQKGQVRVEHYASKRT-KFI-----MAHDSRIAC  263 (432)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~-----~~~~~~i~~  263 (432)
                      ||.|++||.--++++..+..  ..+.+..+..-++ .+.++++ +.+...+|+++|.+.... ..+     .+.+.-+.+
T Consensus       803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliA-gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIA-GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheee-eccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence            99999999877777654422  1223333443344 4444443 335788999999988332 122     344567899


Q ss_pred             EEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEE-EEecCCCCCCCCC
Q 014007          264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV-FNLKVNSGSARSE  342 (432)
Q Consensus       264 ~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~  342 (432)
                      ++..+.|+.|+++-.+|. |.+.|.++|+.+...+.  .+.....++ .|..+.|+....|.++.+ |....+.......
T Consensus       882 iaVa~~GN~lAa~LSnGc-i~~LDaR~G~vINswrp--mecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  882 IAVADKGNKLAAALSNGC-IAILDARNGKVINSWRP--MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             EEeccCcchhhHHhcCCc-EEEEecCCCceeccCCc--ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence            999999999999999999 99999999998877663  223333343 255667777777888888 8766554221111


Q ss_pred             --CCCCCCCCCCCCCceeEe--ecccceeecc-----eeeEEEEe--cCCCceEEEEccCCCEEEEEecCCeEEE
Q 014007          343 --PRSTSDPTLPTSSLSFIK--GVLPKYFSSE-----WSVAQFRL--VEGSPYIVAFGHQKNTVVILGMDGSFYR  406 (432)
Q Consensus       343 --~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~i  406 (432)
                        ..+.-+...-+.++.+..  ..+..|....     ..+..++.  -.+..++++--|-+.-+..|+..|.|.+
T Consensus       958 pppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  958 PPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             CCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence              111111122222222221  0111111110     00111111  2256777888887777777888888875

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.13  E-value=4.7e-07  Score=78.53  Aligned_cols=212  Identities=15%  Similarity=0.107  Sum_probs=141.7

Q ss_pred             EEEEcC-CCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeee-CCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007           90 HISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQS  166 (432)
Q Consensus        90 ~~~~s~-~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~~~~~~v~iwd~~~~  166 (432)
                      ++.|.+ ++.++.+...++ |..|+..+..... ..+.  .   ...+.+. +++.++++..       +.+.++|..++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g   70 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--G---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTG   70 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--S---EEEEEEECTTSEEEEEET-------TCEEEEETTTT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--C---CceEEEEccCCEEEEEEc-------CceEEEecCCC
Confidence            578998 666666665455 8889987765542 2222  1   6666776 7777777765       55677798888


Q ss_pred             ceeEEee------cCCceEEEEEecCccEEEeC-----------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007          167 RCIGELS------FRSEVRSVKLRRDRIIVVLE-----------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       167 ~~~~~~~------~~~~v~~~~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (432)
                      +......      .....+.+++.++|.+.+++           |.|..++.. ++...... .-...+.++|+|+++.+
T Consensus        71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEE
T ss_pred             cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchhe
Confidence            6544333      23457889999999877641           567888876 55443333 34445689999999988


Q ss_pred             EEEeecCCCCcEEEEEccCCc--e---eeee-cc--CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC
Q 014007          230 VLVCPGLQKGQVRVEHYASKR--T---KFIM-AH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~--~---~~~~-~~--~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~  301 (432)
                      +++-  +..+.|..++++...  +   ..+. ..  .+....+++..+|++.++....+. |.++|.. |+.+..+....
T Consensus       149 yv~d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p~  224 (246)
T PF08450_consen  149 YVAD--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELPV  224 (246)
T ss_dssp             EEEE--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-SS
T ss_pred             eecc--cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCCC
Confidence            7654  467889999986422  1   2221 12  234788999999998887777788 9999965 99999888652


Q ss_pred             CcCceEEEEE-CCCCCEEEEEe
Q 014007          302 DRAEIYSLAF-SSNAQWLAVSS  322 (432)
Q Consensus       302 ~~~~i~~~~~-s~~~~~l~~~~  322 (432)
                        ..+++++| .++.+.|...+
T Consensus       225 --~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  225 --PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             --SSEEEEEEESTTSSEEEEEE
T ss_pred             --CCEEEEEEECCCCCEEEEEe
Confidence              58999999 46766665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.11  E-value=2.2e-09  Score=92.80  Aligned_cols=160  Identities=14%  Similarity=0.147  Sum_probs=112.3

Q ss_pred             EEEEEecCccEEEe---CCeEEEEEcCCC----eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007          179 RSVKLRRDRIIVVL---EQKIFVYNFADL----KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (432)
Q Consensus       179 ~~~~~~~~~~~~~~---d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~  251 (432)
                      ..+..++++++++.   +....+++....    +.+....... .-+.+.+.-+.....++-..+....+.+|.....+.
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            33445566666662   334445554432    2222222222 223455555555555554334566666776666777


Q ss_pred             eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007          252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  331 (432)
                      ..+.+|-+.++.++|+||+++++++..|.. ||+-.....-.+..|-.+ |+..|..++.-++ +.|++++.|++|++||
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~~-~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTDN-YLLLSGSGDKTLRLWD  221 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence            778899999999999999999999999999 999887777677777654 8889999999754 5689999999999999


Q ss_pred             ecCCCCCCCCC
Q 014007          332 LKVNSGSARSE  342 (432)
Q Consensus       332 ~~~~~~~~~~~  342 (432)
                      +.+++++...+
T Consensus       222 ~~sgk~L~t~d  232 (390)
T KOG3914|consen  222 ITSGKLLDTCD  232 (390)
T ss_pred             cccCCcccccc
Confidence            99999886654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.06  E-value=8.7e-09  Score=86.17  Aligned_cols=240  Identities=11%  Similarity=0.218  Sum_probs=154.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCe-e--EEEeecccCc------------ceeEEEEeeeCC---eEE
Q 014007           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-E--IFRRDFERGG------------GIGVVEMLFRCN---ILA  143 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~-~--~~~~~~~~~~------------~~~v~~~~~~~~---~~~  143 (432)
                      ...+.|+++.|...|.||++|..+| |.+|.-+... +  .+...++ +|            ...|..+.|..+   ..+
T Consensus        24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            3467899999999999999999777 8888754332 1  1112232 22            234556665432   234


Q ss_pred             EecCCCCCCCCCCeEEEEeCCCCc------------------------------------------eeEEee--cCCceE
Q 014007          144 LVGGGPDPQYPLNKVMIWDDHQSR------------------------------------------CIGELS--FRSEVR  179 (432)
Q Consensus       144 ~~s~~~d~~~~~~~v~iwd~~~~~------------------------------------------~~~~~~--~~~~v~  179 (432)
                      ++++ .|     .+|++|.+....                                          +.+.+.  |.-.|.
T Consensus       103 Llst-Nd-----ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN  176 (460)
T COG5170         103 LLST-ND-----KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN  176 (460)
T ss_pred             EEec-CC-----ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence            4444 44     899999764320                                          001111  555688


Q ss_pred             EEEEecCccEEEe--CCeEEEEEcCCCee---eEEEeec-----cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC
Q 014007          180 SVKLRRDRIIVVL--EQKIFVYNFADLKL---LHQIETI-----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (432)
Q Consensus       180 ~~~~~~~~~~~~~--d~~i~i~d~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~  249 (432)
                      ++.++.|...+.+  |=.|.+|++.-...   +..++.+     ...+++..|+|....++.-+  +..|.|++-|++..
T Consensus       177 SiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS--sSkG~Ikl~DlRq~  254 (460)
T COG5170         177 SISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS--SSKGEIKLNDLRQS  254 (460)
T ss_pred             eeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe--cCCCcEEehhhhhh
Confidence            8899888777664  44788998764221   2222222     23466788999877766544  46899999999852


Q ss_pred             ce-----ee------------eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCC----------
Q 014007          250 RT-----KF------------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGA----------  301 (432)
Q Consensus       250 ~~-----~~------------~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~----------  301 (432)
                      .+     ..            +.+-...|..+.|+++|+++++-+.. + |++||.+.. .++.++..+.          
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h~~l~~~l~d~Y  332 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMHCDLMDELNDVY  332 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechHHHHHHHHHhhh
Confidence            21     11            12234578899999999999887665 4 999998754 5666664321          


Q ss_pred             CcCc---eEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          302 DRAE---IYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       302 ~~~~---i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      ....   -..+.||.|.+.+++|+..+..-+|-+.
T Consensus       333 EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         333 ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             hccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            0112   3468899999999999988888888644

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.03  E-value=5.4e-07  Score=77.51  Aligned_cols=232  Identities=18%  Similarity=0.178  Sum_probs=150.9

Q ss_pred             CCeEEEEEcC-CCCEEEEEcCCc--EEEEEcCCCeeEEEeecccCcceeE-EEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007           86 PTLLHISFNQ-DHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGV-VEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        86 ~~v~~~~~s~-~~~~l~~~~~~~--i~iw~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~s~~~d~~~~~~~v~iw  161 (432)
                      .....++.+| ....++.+-.-+  ..+||..+++......-.  ..... -.-.|++++..|.+...|-.-..|.|-||
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~--~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP--PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC--CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            3455688899 455667776444  889999888766332221  22212 23568999999998877644455899999


Q ss_pred             eCC-CCceeEEee-cCCceEEEEEecCccEEE-e--------------------CCeEEEEEcCCCeeeEEEee----cc
Q 014007          162 DDH-QSRCIGELS-FRSEVRSVKLRRDRIIVV-L--------------------EQKIFVYNFADLKLLHQIET----IA  214 (432)
Q Consensus       162 d~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~--------------------d~~i~i~d~~~~~~~~~~~~----~~  214 (432)
                      |.. +.+.+.++. +.-....+.+.||+..++ .                    +..+...|..+|+.+.....    +.
T Consensus        83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ  162 (305)
T ss_pred             ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence            998 557778887 666677888999994444 2                    12466677778887776433    55


Q ss_pred             CCcceEEEecCCCcEEEEee--cC---CCCcEEEEEccCCceeee-------eccCCceeEEEEcCCCCEEEEEcCCCce
Q 014007          215 NPKGLCAVSQGVGSLVLVCP--GL---QKGQVRVEHYASKRTKFI-------MAHDSRIACFALTQDGQLLATSSTKGTL  282 (432)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~--g~---~d~~i~i~d~~~~~~~~~-------~~~~~~i~~~~~sp~~~~l~~~~~dg~~  282 (432)
                      ..++.+++..+|.-. ++.-  |.   .-..|-+++.... +..+       ..-...+-+|++++++.++++.+-.|..
T Consensus       163 lSiRHLa~~~~G~V~-~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVA-FAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             cceeeEEecCCCcEE-EEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence            678888888887422 2220  00   0122333332221 2211       2345789999999999988777766655


Q ss_pred             EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeE
Q 014007          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (432)
Q Consensus       283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  327 (432)
                      +.+||..+++.+.....    ..+..++-.+++ ++++.+ .|.+
T Consensus       241 ~~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ssG-~G~~  279 (305)
T PF07433_consen  241 VAVWDAATGRLLGSVPL----PDACGVAPTDDG-FLVSSG-QGQL  279 (305)
T ss_pred             EEEEECCCCCEeecccc----CceeeeeecCCc-eEEeCC-CccE
Confidence            99999999999877763    357778877777 555544 4543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.02  E-value=1.1e-06  Score=73.47  Aligned_cols=227  Identities=11%  Similarity=0.123  Sum_probs=132.3

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEEcCC-CeeE-EEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007           91 ISFNQDHGCFAAGTDHGFRIYNCDP-FREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (432)
Q Consensus        91 ~~~s~~~~~l~~~~~~~i~iw~~~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~  168 (432)
                      ++.+.+|++||+-.|..|.|-.... .... ............-..++|++|+..+|.+...     |+|+++|+.. ..
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~-----G~i~vfdl~g-~~   76 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST-----GTIRVFDLMG-SE   76 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC-----CeEEEEeccc-ce
Confidence            5778999999999998888776532 2111 1122322344455678999999999998888     9999999764 33


Q ss_pred             eEEee--------cCCceEEEEEecCc-------cEEE--eCCeEEEEEcCC-----CeeeEEEee---ccCCcceEEEe
Q 014007          169 IGELS--------FRSEVRSVKLRRDR-------IIVV--LEQKIFVYNFAD-----LKLLHQIET---IANPKGLCAVS  223 (432)
Q Consensus       169 ~~~~~--------~~~~v~~~~~~~~~-------~~~~--~d~~i~i~d~~~-----~~~~~~~~~---~~~~~~~~~~~  223 (432)
                      +..+.        ....|.++.|.+-.       .+++  .+|.++-|-+..     .+..+.+..   ....+..+.++
T Consensus        77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~  156 (282)
T PF15492_consen   77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH  156 (282)
T ss_pred             eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence            33333        23456677775432       2333  378777776532     233444433   35578888888


Q ss_pred             cCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEc---CCCCEEEEEcCCCce-----EEEEECCCCceEE
Q 014007          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT---QDGQLLATSSTKGTL-----VRIFNTLDGTLLQ  295 (432)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s---p~~~~l~~~~~dg~~-----i~vwd~~~~~~~~  295 (432)
                      |..+-+++  +|.....-...          .+....+++-..-   |..+. ++...|+..     -.+|.+-+.+...
T Consensus       157 p~h~LLlV--gG~~~~~~~~s----------~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs  223 (282)
T PF15492_consen  157 PKHRLLLV--GGCEQNQDGMS----------KASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFS  223 (282)
T ss_pred             CCCCEEEE--eccCCCCCccc----------cccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeee
Confidence            88764443  35433321000          1112222222221   11111 122222210     1233333222211


Q ss_pred             EEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       296 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                       .. ......|..|..||||+.||+...+|.|.+|++.+.+..
T Consensus       224 -~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  224 -RQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             -cc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence             11 124578999999999999999999999999999987754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.01  E-value=1e-06  Score=73.52  Aligned_cols=221  Identities=12%  Similarity=0.087  Sum_probs=130.8

Q ss_pred             EEEEecCccEEEe--CCeEEEEEcCCC--eeeEEEeeccCC---cceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee
Q 014007          180 SVKLRRDRIIVVL--EQKIFVYNFADL--KLLHQIETIANP---KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK  252 (432)
Q Consensus       180 ~~~~~~~~~~~~~--d~~i~i~d~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~  252 (432)
                      .++.+.+|++++.  |..|.|-..++.  ..+...+..+++   -+.++|+||+..++++.   ..|.|++||+.+..+.
T Consensus         2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~---S~G~i~vfdl~g~~lf   78 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE---STGTIRVFDLMGSELF   78 (282)
T ss_pred             ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc---CCCeEEEEecccceeE
Confidence            3567789999884  888888776652  233333333332   35699999988655543   6799999999876554


Q ss_pred             eeec-------cCCceeEEEEcCC------CCEEEEEcCCCceEEEEECC-----CCceEEEEEeCC-CcCceEEEEECC
Q 014007          253 FIMA-------HDSRIACFALTQD------GQLLATSSTKGTLVRIFNTL-----DGTLLQEVRRGA-DRAEIYSLAFSS  313 (432)
Q Consensus       253 ~~~~-------~~~~i~~~~~sp~------~~~l~~~~~dg~~i~vwd~~-----~~~~~~~~~~~~-~~~~i~~~~~s~  313 (432)
                      .+..       -...|..+.|.+.      ...|++-..+|. ++=|-+.     ..+..+.|.... ++..|.++.++|
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~-L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ-LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP  157 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccce-eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence            4432       2345677777542      224566667776 7766543     223444444322 357899999999


Q ss_pred             CCCEEEEEeCC-C----------eEEEEEecCCCCCCCCCC-CCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007          314 NAQWLAVSSDK-G----------TVHVFNLKVNSGSARSEP-RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG  381 (432)
Q Consensus       314 ~~~~l~~~~~d-g----------~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (432)
                      ..++|++|+.. .          -+..|.+-++.+--.... ..... ........+++..      ..+-+........
T Consensus       158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~-~~~~~~~~~~~~~------~~~~fs~~~~~~d  230 (282)
T PF15492_consen  158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI-TASSKRRGLLRIP------SFKFFSRQGQEQD  230 (282)
T ss_pred             CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc-cccccccceeecc------ceeeeeccccCCC
Confidence            99988887631 1          256676655542111000 00000 0000011111100      0000111112346


Q ss_pred             CceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .|..|..||||+.||+...+|.|.+|++..
T Consensus       231 ~i~kmSlSPdg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  231 GIFKMSLSPDGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             ceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence            799999999999999999999999999965

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.01  E-value=6.3e-07  Score=77.08  Aligned_cols=199  Identities=16%  Similarity=0.091  Sum_probs=133.8

Q ss_pred             EEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCc--eEEEEEecCccEEEe--------CCeEEEEE
Q 014007          133 VEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE--VRSVKLRRDRIIVVL--------EQKIFVYN  200 (432)
Q Consensus       133 ~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~--v~~~~~~~~~~~~~~--------d~~i~i~d  200 (432)
                      ..++.+| ....++.+-.-    .....+||..+++....+. ..+.  .-.-.|++||+++++        .|.|-|||
T Consensus         8 H~~a~~p~~~~avafaRRP----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRP----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             cceeeCCCCCeEEEEEeCC----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            3455666 44555555443    1457899999999888776 2222  224689999999984        46899999


Q ss_pred             cC-CCeeeEEEeeccCCcceEEEecCCCcEEEEeecC---------------CCCcEEEEEccCCceee---e--eccCC
Q 014007          201 FA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL---------------QKGQVRVEHYASKRTKF---I--MAHDS  259 (432)
Q Consensus       201 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------------~d~~i~i~d~~~~~~~~---~--~~~~~  259 (432)
                      .. ..+.+.++..+.-.-..+.+.||++.++++.+|-               .+..+.+.|..++.+..   +  ..|..
T Consensus        84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence            98 5677777776655555788999999888876441               22445555555554322   3  34777


Q ss_pred             ceeEEEEcCCCCEEEEEcCCCc------eEEEEECCCCceEEEEEeC-----CCcCceEEEEECCCCCEEEEEe-CCCeE
Q 014007          260 RIACFALTQDGQLLATSSTKGT------LVRIFNTLDGTLLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSS-DKGTV  327 (432)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~dg~------~i~vwd~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~-~dg~i  327 (432)
                      .|..+++.++|..++..-..|.      .|-+++  .++.+..+...     .....+-+|+++.++.++++.+ ..|.+
T Consensus       164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence            8999999999987666554442      144443  33333333321     1236799999999999887766 78899


Q ss_pred             EEEEecCCCC
Q 014007          328 HVFNLKVNSG  337 (432)
Q Consensus       328 ~iwd~~~~~~  337 (432)
                      .+||..+++.
T Consensus       242 ~~~d~~tg~~  251 (305)
T PF07433_consen  242 AVWDAATGRL  251 (305)
T ss_pred             EEEECCCCCE
Confidence            9999999984

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=4.5e-08  Score=91.66  Aligned_cols=235  Identities=13%  Similarity=0.071  Sum_probs=163.9

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC------------CeEEEecCCCCCCCCC
Q 014007           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC------------NILALVGGGPDPQYPL  155 (432)
Q Consensus        88 v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~s~~~d~~~~~  155 (432)
                      -.++.|+|.| ++|.|+..-|.+-|..+.+.+  ..++ .|...|+.+.|.|            ....+++++..     
T Consensus        18 ~~A~Dw~~~G-LiAygshslV~VVDs~s~q~i--qsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~-----   88 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSHSLVSVVDSRSLQLI--QSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS-----   88 (1062)
T ss_pred             ccccccCccc-eEEEecCceEEEEehhhhhhh--hccc-cCccceeEEEeccCCCchhccCccccceeEEecccc-----
Confidence            5678999876 788888878988887666555  5554 6889999998865            23567888887     


Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEec---Cc-cEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRR---DR-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~---~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                      |.|.+||...+..+..+. +..++..++|-+   +. .+++   ...+|.+|+..+|+.............++.+.|-..
T Consensus        89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~  168 (1062)
T KOG1912|consen   89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS  168 (1062)
T ss_pred             CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence            999999999998888888 788999999876   33 2333   267999999999998887766555666677777544


Q ss_pred             cEEEEeecCCCCcEEEEEccC--------CceeeeeccCC-------------------------ceeEEEEcCCCCEEE
Q 014007          228 SLVLVCPGLQKGQVRVEHYAS--------KRTKFIMAHDS-------------------------RIACFALTQDGQLLA  274 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~--------~~~~~~~~~~~-------------------------~i~~~~~sp~~~~l~  274 (432)
                      .-+.+. | ..|.+.+-+.-.        ++.+....|..                         ....++|+|.-+.++
T Consensus       169 rh~~~l-~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  169 RHFCVL-G-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             ceEEEE-c-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            433332 2 456666555432        11111112211                         012356788666555


Q ss_pred             EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC--CEEEEEeCCCeEEEEEecCCC
Q 014007          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA--QWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      ....... +.++|++-..++......  .+.+.-+.+-|++  ..|.+.-.||.+.+|-.+...
T Consensus       247 fi~~pre-llv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~  307 (1062)
T KOG1912|consen  247 FITFPRE-LLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP  307 (1062)
T ss_pred             EEEeccc-eEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence            5666677 999999988888887753  3555566776665  468888899999999876543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.00  E-value=2.9e-07  Score=75.66  Aligned_cols=234  Identities=10%  Similarity=0.007  Sum_probs=145.3

Q ss_pred             CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe-e-cCCceE---EEEEecCccEEEe-CCeEEEEEcCCCeeeEEEeec
Q 014007          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-S-FRSEVR---SVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETI  213 (432)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~-~-~~~~v~---~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~  213 (432)
                      +-..++.|+..     |...+|...+.+....+ . +...|.   ..+-+.-...+++ |.+++++++.-+.....+...
T Consensus        83 kc~~la~gG~~-----g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~  157 (344)
T KOG4532|consen   83 KCVTLADGGAS-----GQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ  157 (344)
T ss_pred             cccEEEecccc-----ceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc
Confidence            34567777666     99999998765432222 2 333222   2223333344443 778888887654333322222


Q ss_pred             cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee----eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (432)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~  289 (432)
                      .-....+.++++++..  ++.| ....|..|.++.....    ........-.+..|+.....+|++..||+ +.|||++
T Consensus       158 ~~~~ns~~~snd~~~~--~~Vg-ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR  233 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPSWG--SSVG-DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVR  233 (344)
T ss_pred             ccceeeeEEcCCCceE--EEec-CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEec
Confidence            2225678899998854  4444 6788888988763222    22334455678899999999999999999 9999999


Q ss_pred             CCceEEEEE---eCCCcCceEEEEECCCCC--EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007          290 DGTLLQEVR---RGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (432)
Q Consensus       290 ~~~~~~~~~---~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (432)
                      .........   ...|.+.+..+.|++-|.  +|...-.=+.+++-|+++++..+.+                    .++
T Consensus       234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I--------------------~i~  293 (344)
T KOG4532|consen  234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI--------------------VIP  293 (344)
T ss_pred             ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE--------------------ecC
Confidence            765443322   234788999999998664  4444445678999999998743211                    000


Q ss_pred             ceeecceeeEEEEecCC-CceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          365 KYFSSEWSVAQFRLVEG-SPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       365 ~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .   .     ....|.. .|....|+.++..+.+.+++ .++-|+++.
T Consensus       294 ~---d-----~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  294 D---D-----VERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             c---c-----ccccccccccccccccCCCcccccccch-hhheeeccc
Confidence            0   0     1122332 37778888888877777765 345555544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=5.2e-08  Score=90.45  Aligned_cols=236  Identities=10%  Similarity=0.077  Sum_probs=154.4

Q ss_pred             CCCCCcccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCC
Q 014007           73 LPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (432)
Q Consensus        73 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  151 (432)
                      ......+.+.+|...|.-+.|+.+.+-|.++..+| |.+|-+-.+.-.... +.....+.|.+|+|+.+|..+.-.-.| 
T Consensus        59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~kIcIvYeD-  136 (1189)
T KOG2041|consen   59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTKICIVYED-  136 (1189)
T ss_pred             cccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcEEEEEEcc-
Confidence            33344578999999999999999999999888667 999988655433212 223466788999999999888777777 


Q ss_pred             CCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCC-------eeeEEEe----eccCC
Q 014007          152 QYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL-------KLLHQIE----TIANP  216 (432)
Q Consensus       152 ~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~-------~~~~~~~----~~~~~  216 (432)
                          |.|.+=.++. ..+.--. .......+.|++|...+.   .+|.+.+||....       .+.....    .....
T Consensus       137 ----GavIVGsvdG-NRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~k  211 (1189)
T KOG2041|consen  137 ----GAVIVGSVDG-NRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTK  211 (1189)
T ss_pred             ----CCEEEEeecc-ceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcc
Confidence                8888776543 3332222 223345788999987666   4899999996531       1111111    11112


Q ss_pred             cceEEE--------ecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCc-------
Q 014007          217 KGLCAV--------SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT-------  281 (432)
Q Consensus       217 ~~~~~~--------~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~-------  281 (432)
                      +..+.|        -|+...+++..   .+|.+.+..-.+...-.+....-.+..+.|+++|..|++++.+..       
T Consensus       212 ia~i~w~~g~~~~v~pdrP~lavcy---~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~  288 (1189)
T KOG2041|consen  212 IAEIEWNTGPYQPVPPDRPRLAVCY---ANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDS  288 (1189)
T ss_pred             ccceeeccCccccCCCCCCEEEEEE---cCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCcccc
Confidence            323333        24555555444   678887765544333333334467889999999999999987531       


Q ss_pred             -eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007          282 -LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (432)
Q Consensus       282 -~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  321 (432)
                       .|.++. .-|+.+.+++..  ...|++++|-..|-.+|.+
T Consensus       289 n~v~Fys-p~G~i~gtlkvp--g~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  289 NKVHFYS-PYGHIVGTLKVP--GSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             ceEEEec-cchhheEEEecC--CceeeeeEEcCCceEEEEE
Confidence             156664 567788888854  3679999997766555543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=2.7e-07  Score=86.63  Aligned_cols=103  Identities=13%  Similarity=0.150  Sum_probs=78.5

Q ss_pred             EEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe---------CCCeEEEEEecCCCCCCCCC
Q 014007          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---------DKGTVHVFNLKVNSGSARSE  342 (432)
Q Consensus       272 ~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~  342 (432)
                      ++|.|...|+ |.++|+.++..-..+..  |...|.++.|-...+++-.+.         .-+.+.+-|+++|....   
T Consensus       439 LvAvGT~sGT-V~vvdvst~~v~~~fsv--ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~---  512 (1062)
T KOG1912|consen  439 LVAVGTNSGT-VDVVDVSTNAVAASFSV--HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR---  512 (1062)
T ss_pred             eEEeecCCce-EEEEEecchhhhhhhcc--cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc---
Confidence            6788999999 99999999988888875  678999999987666554322         23467788888876221   


Q ss_pred             CCCCCCCCCCCCCceeEeecccceeecceeeEEEEe-cCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          343 PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                                                    +.-+.. .+.+|..+..|..+++|+..=.|.-+-+|++.
T Consensus       513 ------------------------------fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~k  551 (1062)
T KOG1912|consen  513 ------------------------------FRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLK  551 (1062)
T ss_pred             ------------------------------cccCCCCCcCcceeeeecccCceEEEEecccchHHHhhc
Confidence                                          111122 23679999999999999999999999999883

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.97  E-value=3.7e-07  Score=75.11  Aligned_cols=189  Identities=11%  Similarity=0.044  Sum_probs=118.9

Q ss_pred             CCeEEEEEcCCCee-eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccC--CceeEEEEcCC
Q 014007          193 EQKIFVYNFADLKL-LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD--SRIACFALTQD  269 (432)
Q Consensus       193 d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~sp~  269 (432)
                      .|...+|.+.+.+. ++....+.+.+..+.=.-+...-++.+  +.|.++++.++..+..+.. .|.  -.+.++.+++|
T Consensus        93 ~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~--sndht~k~~~~~~~s~~~~-~h~~~~~~ns~~~snd  169 (344)
T KOG4532|consen   93 SGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIA--SNDHTGKTMVVSGDSNKFA-VHNQNLTQNSLHYSND  169 (344)
T ss_pred             cceeeeecccCcccceeeecccccchhhhhhhcccccceeec--cCCcceeEEEEecCcccce-eeccccceeeeEEcCC
Confidence            56888998876443 333334444443322222222223443  3677778777766443322 222  23889999999


Q ss_pred             CCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCC
Q 014007          270 GQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSD  348 (432)
Q Consensus       270 ~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  348 (432)
                      ++++++.+.... |..|.+... +.+..+........-.+..|+.....+|++..||++.|||++.........      
T Consensus       170 ~~~~~~Vgds~~-Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~------  242 (344)
T KOG4532|consen  170 PSWGSSVGDSRR-VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI------  242 (344)
T ss_pred             CceEEEecCCCc-ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh------
Confidence            999999998888 999987643 333232222234556788999999999999999999999999876322110      


Q ss_pred             CCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC--EEEEEecCCeEEEEEecCCCCCcc
Q 014007          349 PTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN--TVVILGMDGSFYRCQFDPVNGGEM  417 (432)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~v~iw~~~~~~~~~~  417 (432)
                                              -.+-..|.|.+..+.|++-|.  +|+..-.-+.+.+-++  .++..+
T Consensus       243 ------------------------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~--R~~~~~  287 (344)
T KOG4532|consen  243 ------------------------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT--RNYVNH  287 (344)
T ss_pred             ------------------------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc--ccCcee
Confidence                                    111234788999999998554  4555555677777554  444433

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.96  E-value=4.9e-09  Score=106.18  Aligned_cols=195  Identities=13%  Similarity=0.204  Sum_probs=147.1

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      ...|-..|.++.=+|...+.++|+ |+.|++|....++.+.....  .....+..+.|+.+|..+..+..|     |.+.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt--~g~s~vtr~~f~~qGnk~~i~d~d-----g~l~ 2276 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT--AGNSRVTRSRFNHQGNKFGIVDGD-----GDLS 2276 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec--cCcchhhhhhhcccCCceeeeccC-----Ccee
Confidence            344567888888899888888887 55599999887777754444  345899999999999999988888     9999


Q ss_pred             EEeCCCCceeEEee-cCCceEEEEEecCccEEE---e-CCeEEEEEcCCC---eeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---L-EQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       160 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~-d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      +|.+. .++....+ |.....+..|-..+..-+   . ++.+.+||..-.   ..++  ..|.+.++++++.|...  ++
T Consensus      2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q--ll 2351 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ--LL 2351 (2439)
T ss_pred             ecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce--EE
Confidence            99976 44445555 888888888877333222   1 678999996432   2334  67888999999999865  34


Q ss_pred             EeecCCCCcEEEEEccCCceee-eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007          232 VCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~  299 (432)
                      + +|+.+|.|++||++...++. ++.         ++ ...++++|+..|. |+||++.....++.+..
T Consensus      2352 i-sggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2352 I-SGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             E-ecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence            4 46699999999999865432 322         44 5678999999999 99999998888887764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.95  E-value=2.1e-08  Score=83.93  Aligned_cols=254  Identities=13%  Similarity=0.202  Sum_probs=152.0

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-e----eEEee-------------cCCceEEEEEecCc--
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-C----IGELS-------------FRSEVRSVKLRRDR--  187 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-~----~~~~~-------------~~~~v~~~~~~~~~--  187 (432)
                      ....|+++.|...|.++++|+..     |.|.+|.-.... +    ..+++             -...|..+.|-.++  
T Consensus        25 ead~ItaVefd~tg~YlatGDkg-----GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r   99 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKG-----GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR   99 (460)
T ss_pred             ccceeeEEEeccccceEeecCCC-----ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence            45678889999999999999998     999999754321 1    11122             23468888887653  


Q ss_pred             -cEEEe--CCeEEEEEcCCCee-------------------e--------EEE----------------eeccCCcceEE
Q 014007          188 -IIVVL--EQKIFVYNFADLKL-------------------L--------HQI----------------ETIANPKGLCA  221 (432)
Q Consensus       188 -~~~~~--d~~i~i~d~~~~~~-------------------~--------~~~----------------~~~~~~~~~~~  221 (432)
                       .++++  |.+|++|.+.....                   +        -.+                ..|.-.+.++.
T Consensus       100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS  179 (460)
T COG5170         100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS  179 (460)
T ss_pred             ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence             34443  88999998754310                   0        000                11222233455


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccC--Cc--eeeeecc-----CCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCC
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS--KR--TKFIMAH-----DSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDG  291 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~--~~~~~~~-----~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~  291 (432)
                      +..|.+.+  .+  ..|-.|.+|++..  +.  +.-+..|     ..-|++..|+|. ...+.-.+..|. |++-|++..
T Consensus       180 ~NsD~et~--lS--aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl~DlRq~  254 (460)
T COG5170         180 FNSDKETL--LS--ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKLNDLRQS  254 (460)
T ss_pred             ecCchhee--ee--ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEehhhhhh
Confidence            55554433  22  2678899998875  22  2223333     345889999994 456677788899 999999842


Q ss_pred             c------eEEEE--EeCC------CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC-CCCCCCCCCCCCCCCCCCc
Q 014007          292 T------LLQEV--RRGA------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG-SARSEPRSTSDPTLPTSSL  356 (432)
Q Consensus       292 ~------~~~~~--~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~  356 (432)
                      .      .+...  .+-.      ....|..+.|+++|+++++-+ -.+|+|||++..+. +++++.|..          
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~----------  323 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCD----------  323 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHH----------
Confidence            1      11111  1100      114688899999999998765 46899999987652 222211100          


Q ss_pred             eeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                        +...+.......--+.        -..+.||.|.+.+.+|+.....-||-.+..
T Consensus       324 --l~~~l~d~YEnDaifd--------kFeisfSgd~~~v~sgsy~NNfgiyp~~ss  369 (460)
T COG5170         324 --LMDELNDVYENDAIFD--------KFEISFSGDDKHVLSGSYSNNFGIYPTDSS  369 (460)
T ss_pred             --HHHHHHhhhhccceee--------eEEEEecCCcccccccccccceeeeccccC
Confidence              0000000000000000        124788999999999999999998876554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.95  E-value=1.2e-06  Score=81.60  Aligned_cols=221  Identities=11%  Similarity=0.106  Sum_probs=126.6

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEeecccCc-------ceeE-EEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGG-------GIGV-VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (432)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~-------~~~v-~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~  168 (432)
                      ..+.+++ ++.+.-+|.++++......+....       ...+ ....... +..+++ ..+     +.++.+|.++|+.
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~v~v~-~~~-----g~l~ald~~tG~~  142 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAG-GKVYIG-SEK-----GQVYALNAEDGEV  142 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEEC-CEEEEE-cCC-----CEEEEEECCCCCC
Confidence            3444444 444777888777777665553100       0000 0112222 333333 344     8999999999999


Q ss_pred             eEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCc-----ceEEEecCCCcEEEEeecCCCCcE
Q 014007          169 IGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       169 ~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~d~~i  241 (432)
                      +.+......+.+--.-.++.+++  .++.|+.+|.++|+.+..........     ....+.  ++.+++.   ..++.+
T Consensus       143 ~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~---~~~g~v  217 (394)
T PRK11138        143 AWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVG---GDNGRV  217 (394)
T ss_pred             cccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEE---cCCCEE
Confidence            88887444443322222555554  37899999999999887765421110     111111  2333332   357888


Q ss_pred             EEEEccCCceeeeeccCC--------ceeEEEEcC--CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007          242 RVEHYASKRTKFIMAHDS--------RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (432)
Q Consensus       242 ~i~d~~~~~~~~~~~~~~--------~i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~  311 (432)
                      ..+|..++...-......        ....+.-+|  .+..++.++.++. +..+|..+|+.+......    ....+..
T Consensus       218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~----~~~~~~~  292 (394)
T PRK11138        218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYG----SVNDFAV  292 (394)
T ss_pred             EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCC----CccCcEE
Confidence            888887754322111000        011111223  3456777778898 999999999887655421    1122222


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          312 SSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       312 s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                        ++..|+.++.+|.++.+|..+++.
T Consensus       293 --~~~~vy~~~~~g~l~ald~~tG~~  316 (394)
T PRK11138        293 --DGGRIYLVDQNDRVYALDTRGGVE  316 (394)
T ss_pred             --ECCEEEEEcCCCeEEEEECCCCcE
Confidence              456777788899999999998873

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.94  E-value=3.7e-06  Score=72.56  Aligned_cols=213  Identities=15%  Similarity=0.200  Sum_probs=132.7

Q ss_pred             CeEEEEeCCCCceeEEeecCC---ceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007          156 NKVMIWDDHQSRCIGELSFRS---EVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      |.|..||..+|+.+.......   ...+..+..++.+++  .++.|+.||..+|+.+..... ...+.... ...++.++
T Consensus         3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~   80 (238)
T PF13360_consen    3 GTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVY   80 (238)
T ss_dssp             SEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccc
Confidence            899999999999999887422   222223435555555  388999999999999888875 33333332 34445555


Q ss_pred             EEeecCCCCcEEEEEccCCceeee--eccC---CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC-
Q 014007          231 LVCPGLQKGQVRVEHYASKRTKFI--MAHD---SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA-  304 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~~~~~--~~~~---~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~-  304 (432)
                      +++   .++.+..+|..++.+.-.  ....   ..........++..++++..++. |..+|.++|+.+..+....... 
T Consensus        81 v~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~~~  156 (238)
T PF13360_consen   81 VGT---SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEPRGS  156 (238)
T ss_dssp             EEE---TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT-SS
T ss_pred             ccc---ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCCCCC
Confidence            554   567999999877655332  2111   11122223334778888888998 9999999999998887632111 


Q ss_pred             -c------e-EEEEECCCCCEEEEEeCCCe-EEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEE
Q 014007          305 -E------I-YSLAFSSNAQWLAVSSDKGT-VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ  375 (432)
Q Consensus       305 -~------i-~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (432)
                       .      + ..+.+. ++ .+..++.++. +.+ |+.+++.+                                |    
T Consensus       157 ~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~--------------------------------w----  197 (238)
T PF13360_consen  157 SPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKL--------------------------------W----  197 (238)
T ss_dssp             --EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEE--------------------------------E----
T ss_pred             cceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEE--------------------------------E----
Confidence             1      1 233333 44 6666777775 555 98888621                                1    


Q ss_pred             EEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcc
Q 014007          376 FRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEM  417 (432)
Q Consensus       376 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~  417 (432)
                       ....+.+.. ....++..|++++.+|.|+.|++  .+|+.+
T Consensus       198 -~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~--~tG~~~  235 (238)
T PF13360_consen  198 -SKPISGIYS-LPSVDGGTLYVTSSDGRLYALDL--KTGKVV  235 (238)
T ss_dssp             -EECSS-ECE-CEECCCTEEEEEETTTEEEEEET--TTTEEE
T ss_pred             -EecCCCccC-CceeeCCEEEEEeCCCEEEEEEC--CCCCEE
Confidence             111111222 13467888888889999999665  555543

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.93  E-value=2.6e-06  Score=73.57  Aligned_cols=213  Identities=16%  Similarity=0.166  Sum_probs=129.3

Q ss_pred             CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEec
Q 014007          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR  185 (432)
Q Consensus       106 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~  185 (432)
                      +.|..||..+++......+. .............++..++. +.+     +.|+.||..+|+.+..+.....+.......
T Consensus         3 g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~-~~~-----~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~   75 (238)
T PF13360_consen    3 GTLSALDPRTGKELWSYDLG-PGIGGPVATAVPDGGRVYVA-SGD-----GNLYALDAKTGKVLWRFDLPGPISGAPVVD   75 (238)
T ss_dssp             SEEEEEETTTTEEEEEEECS-SSCSSEEETEEEETTEEEEE-ETT-----SEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred             CEEEEEECCCCCEEEEEECC-CCCCCccceEEEeCCEEEEE-cCC-----CEEEEEECCCCCEEEEeeccccccceeeec
Confidence            34888888888887766653 11222222233234444444 334     899999999999998888544433332334


Q ss_pred             CccEE-Ee-CCeEEEEEcCCCeeeEEE-eeccC---CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-eeeccC
Q 014007          186 DRIIV-VL-EQKIFVYNFADLKLLHQI-ETIAN---PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHD  258 (432)
Q Consensus       186 ~~~~~-~~-d~~i~i~d~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~~~  258 (432)
                      ++.++ .. ++.|+.+|..+|+.+... .....   ..........++.+++..   .++.|..+|.+++... ......
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEESST
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeecCC
Confidence            44444 43 789999999999998874 32211   112234444466555443   4799999999886653 222222


Q ss_pred             Cc----------e-eEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeE
Q 014007          259 SR----------I-ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (432)
Q Consensus       259 ~~----------i-~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  327 (432)
                      ..          + ..+.+ .++ .++.++.++..+.+ |+.+++.+....  .  ..+..+ ...++..|+.++.++.|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~--~~~~~~-~~~~~~~l~~~~~~~~l  224 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVI-SDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--I--SGIYSL-PSVDGGTLYVTSSDGRL  224 (238)
T ss_dssp             T-SS--EEEETTEEEEEEC-CTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--S--S-ECEC-EECCCTEEEEEETTTEE
T ss_pred             CCCCcceeeecccccceEE-ECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--C--CCccCC-ceeeCCEEEEEeCCCEE
Confidence            11          1 22333 245 67777777752455 999999764222  1  223331 34577788888799999


Q ss_pred             EEEEecCCC
Q 014007          328 HVFNLKVNS  336 (432)
Q Consensus       328 ~iwd~~~~~  336 (432)
                      ..||+++++
T Consensus       225 ~~~d~~tG~  233 (238)
T PF13360_consen  225 YALDLKTGK  233 (238)
T ss_dssp             EEEETTTTE
T ss_pred             EEEECCCCC
Confidence            999999987

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.92  E-value=1.4e-06  Score=75.91  Aligned_cols=241  Identities=15%  Similarity=0.124  Sum_probs=147.0

Q ss_pred             EEEEcCCCCEEEEEc---------CCc--EEEEEcCCCeeEEEeecccCcceeE----EEEeeeCCeEEEecCCCCCCCC
Q 014007           90 HISFNQDHGCFAAGT---------DHG--FRIYNCDPFREIFRRDFERGGGIGV----VEMLFRCNILALVGGGPDPQYP  154 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~---------~~~--i~iw~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~s~~~d~~~~  154 (432)
                      .+..+||++.+++++         +.+  |.+||..+........++..+...+    ..+..+.++.++....-.|.  
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa--  117 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA--  117 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS--
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC--
Confidence            467899999887652         122  8999999988776666653212211    12345566655554433322  


Q ss_pred             CCeEEEEeCCCCceeEEeecCCceEEEEEecCccEE-EeCCeEEEEEcC-CCeeeEEEee----ccCCc-ceEEEecCCC
Q 014007          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIV-VLEQKIFVYNFA-DLKLLHQIET----IANPK-GLCAVSQGVG  227 (432)
Q Consensus       155 ~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~d~~i~i~d~~-~~~~~~~~~~----~~~~~-~~~~~~~~~~  227 (432)
                       ..|.+.|+..++.+.++...+...-.-..+++-.. +.||.+....+. .|+..+....    ..+++ ..-++...+.
T Consensus       118 -~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~  196 (342)
T PF06433_consen  118 -TSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG  196 (342)
T ss_dssp             -EEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred             -CeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence             67889999999998888866655544444444222 249998888887 4554432211    11112 2234445555


Q ss_pred             cEEEEeecCCCCcEEEEEccCCceeeeec-------------cCCceeEEEEcCCCCEEEEEcCCC---------ceEEE
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSSTKG---------TLVRI  285 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~dg---------~~i~v  285 (432)
                      .+++.+   .+|.|+-.|+..........             ..+.-.-+++++..+.|++.-..|         +.|.+
T Consensus       197 ~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  197 RLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             EEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred             eEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence            666654   78999998888754322110             122345578887666555533221         24999


Q ss_pred             EECCCCceEEEEEeCCCcCceEEEEECCCCC-EEEEEe-CCCeEEEEEecCCCCCC
Q 014007          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~  339 (432)
                      +|+.+++.+.++..   +.++.+|..+.+.+ +|++.+ .++.|.+||..+++.+.
T Consensus       274 ~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  274 YDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             EECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            99999999999984   35688999998876 555544 68999999999998543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.90  E-value=6.5e-08  Score=79.05  Aligned_cols=176  Identities=16%  Similarity=0.165  Sum_probs=108.7

Q ss_pred             EEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCce-----EEEEEecCccEEEe--------CCeEEEEEcCCCeeeE
Q 014007          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEV-----RSVKLRRDRIIVVL--------EQKIFVYNFADLKLLH  208 (432)
Q Consensus       142 ~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~  208 (432)
                      .-++++..|     |.+.+++.+..   ..+.+.-++     .+.++-..+.++.+        -+..+.|+++..+.+.
T Consensus       102 t~V~~~~~d-----g~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~  173 (319)
T KOG4714|consen  102 NRVCIGYAD-----GSLAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI  173 (319)
T ss_pred             CceEecCCC-----ceEEEEechHH---HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence            345666777     99999986542   112121111     12222333444432        3456677765433222


Q ss_pred             EEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEE
Q 014007          209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRI  285 (432)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~v  285 (432)
                      .-......+.+++-+|..++++ + +|+.||.+.+||.+..  ....+..|+.+|..+-|+| ++..|+++++||. +..
T Consensus       174 ~~~~~~~~v~~l~~hp~qq~~v-~-cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~  250 (319)
T KOG4714|consen  174 PSKKALDAVTALCSHPAQQHLV-C-CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWH  250 (319)
T ss_pred             ccccccccchhhhCCcccccEE-E-EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEE
Confidence            2122233477888888877654 3 4679999999999984  4556789999999999999 7789999999999 999


Q ss_pred             EECCCCceEEE---------------------EEeC--CCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007          286 FNTLDGTLLQE---------------------VRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       286 wd~~~~~~~~~---------------------~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  331 (432)
                      ||..+ +.+..                     +..-  .....|.+  |.--|..|++|++-+.|++++
T Consensus       251 wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  251 WDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence            99653 22210                     0000  00012222  333577888998888888875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.87  E-value=1.6e-06  Score=85.65  Aligned_cols=200  Identities=14%  Similarity=0.135  Sum_probs=124.6

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe--C-CeEEEEEcCCC
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--E-QKIFVYNFADL  204 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--d-~~i~i~d~~~~  204 (432)
                      ....|.++.|..+...++.+...     |.|.+-|..+......=.....|.+++|+||...++.  . +++.+.+ .+.
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~-----G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f  140 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITAL-----GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDF  140 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecC-----CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccc
Confidence            34688999987766555555555     8899988777654333336789999999999988873  3 3444432 211


Q ss_pred             ------------------------eeeEEEeecc---------------------CCcceEEEecCCCcEEEEee-cCCC
Q 014007          205 ------------------------KLLHQIETIA---------------------NPKGLCAVSQGVGSLVLVCP-GLQK  238 (432)
Q Consensus       205 ------------------------~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~-g~~d  238 (432)
                                              +.-..+++..                     +.-..+.|..||+.+++..- ...+
T Consensus       141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG  220 (1265)
T ss_pred             cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence                                    1111222110                     11224777778776554211 1133


Q ss_pred             -CcEEEEEccCCceeee-eccCCceeEEEEcCCCCEEEEEc---CCCceEEEEECCCCceEEEEEe--CCCcCceEEEEE
Q 014007          239 -GQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAF  311 (432)
Q Consensus       239 -~~i~i~d~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~---~dg~~i~vwd~~~~~~~~~~~~--~~~~~~i~~~~~  311 (432)
                       ..|++||-.. .+... ....+.-.+++|-|.|..+++-.   .|+. |.+|. ++|-.-..|..  ......+..++|
T Consensus       221 ~RkirV~drEg-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffE-rNGL~hg~f~l~~p~de~~ve~L~W  297 (1265)
T KOG1920|consen  221 TRKIRVYDREG-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFE-RNGLRHGEFVLPFPLDEKEVEELAW  297 (1265)
T ss_pred             ceeEEEecccc-hhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEe-cCCccccccccCCcccccchheeee
Confidence             7999999873 33222 22333446899999999988743   4556 89997 45533332221  123345899999


Q ss_pred             CCCCCEEEE---EeCCCeEEEEEecCCC
Q 014007          312 SSNAQWLAV---SSDKGTVHVFNLKVNS  336 (432)
Q Consensus       312 s~~~~~l~~---~~~dg~i~iwd~~~~~  336 (432)
                      +.++..||+   ......|++|-+.+..
T Consensus       298 ns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  298 NSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cCCCCceeeeecccccceEEEEEecCeE
Confidence            999999987   4455569999988765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=7.6e-08  Score=84.62  Aligned_cols=273  Identities=13%  Similarity=0.145  Sum_probs=173.6

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC--C-ceeEEee-cCCceEEEEEecCccEEEe----CCeEEEE
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--S-RCIGELS-FRSEVRSVKLRRDRIIVVL----EQKIFVY  199 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~--~-~~~~~~~-~~~~v~~~~~~~~~~~~~~----d~~i~i~  199 (432)
                      |...|..+ +.....++.+++-|     |.++.|--..  + +.+..+. |...|.+++.+-++.+.++    |..++++
T Consensus         8 hrd~i~hv-~~tka~fiiqASlD-----Gh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    8 HRDVITHV-FPTKAKFIIQASLD-----GHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             ccceeeeE-eeehhheEEeeecc-----hhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence            55545444 33445677888888     9999997432  1 2333344 7888999999999998885    7899999


Q ss_pred             EcCCCeeeEEEeeccCCcceEEEecCC-CcEEEEeecCCCCcEEEEEccCCc---eeeeeccCCceeEEEEcCCCCEEEE
Q 014007          200 NFADLKLLHQIETIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLLAT  275 (432)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~  275 (432)
                      |+.+-..+..++...-+-.+..+...| ....++.+...++.+.++|-....   ...-.-|..+|.++.+.+-+..+++
T Consensus        82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             EeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence            998866554443332222222222233 222344445578999999987733   2334569999999999999999999


Q ss_pred             EcCCCceEEEEECCC------CceEEEEEe-------CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCC
Q 014007          276 SSTKGTLVRIFNTLD------GTLLQEVRR-------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (432)
Q Consensus       276 ~~~dg~~i~vwd~~~------~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  342 (432)
                      ....|. |.-|....      .+....++.       ...+....++.|+|+|..+++-+.|..|++++..+++.++.++
T Consensus       162 iD~~gm-VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  162 IDISGM-VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             ccccce-eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence            999998 99998762      111111110       1123568899999999999999999999999999999887765


Q ss_pred             CCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC-CceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          343 PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-SPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .........+.+...+..-.+.+...-++   .+.-|+. .-..+.|...|++|+-|+-=| |++.+++.
T Consensus       241 E~~t~~~~q~ks~y~l~~VelgRRmaver---elek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t  306 (558)
T KOG0882|consen  241 EVLTDAQYQPKSPYGLMHVELGRRMAVER---ELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT  306 (558)
T ss_pred             ccchhhhhccccccccceeehhhhhhHHh---hHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence            33332222222221111111110000011   1112221 234578888999999888766 67766655

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=5.7e-09  Score=93.82  Aligned_cols=174  Identities=15%  Similarity=0.176  Sum_probs=122.1

Q ss_pred             eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--------ceeeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--------RTKFIMAHDSRIACFALTQDGQLLATSST  278 (432)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (432)
                      +..+.+|...++.++--.+.+.++-   .+.|.+|++|.++..        ...++..|..+|.++.|-.+-++++++  
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiS---ASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--  802 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFIS---ASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--  802 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceee---ccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence            4456677777776655444444432   348999999998761        234567999999999999988887654  


Q ss_pred             CCceEEEEECCCCceEEEEEeCCCcCceEEEEECC--CCCEEEEE-eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS--NAQWLAVS-SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSS  355 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  355 (432)
                      ||. |.+||.--++++.........+.+..+..-+  +...+..| +...+|+++|.+..+                   
T Consensus       803 D~g-iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce-------------------  862 (1034)
T KOG4190|consen  803 DGG-IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE-------------------  862 (1034)
T ss_pred             cCc-ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc-------------------
Confidence            677 9999988887776443322223333333333  34444444 688999999999876                   


Q ss_pred             ceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcce
Q 014007          356 LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMT  418 (432)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~  418 (432)
                                 +..+|.+....++++.+.+++..+.|++++.+-..|.+.+  +|..+|+.+.
T Consensus       863 -----------~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~--LDaR~G~vIN  912 (1034)
T KOG4190|consen  863 -----------WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI--LDARNGKVIN  912 (1034)
T ss_pred             -----------ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE--EecCCCceec
Confidence                       2234444445567778999999999999999999999998  6667776443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.85  E-value=3.6e-06  Score=78.45  Aligned_cols=217  Identities=12%  Similarity=0.082  Sum_probs=125.6

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEE-EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVE-MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (432)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~  175 (432)
                      ..+++++ ++.+..+|.++++......+. +   .+.+ .... ++..++.. .+     +.|..+|.++|+.+..+...
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~---~~~ssP~v~-~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~  189 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVA-G---EALSRPVVS-DGLVLVHT-SN-----GMLQALNESDGAVKWTVNLD  189 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCC-C---ceecCCEEE-CCEEEEEC-CC-----CEEEEEEccCCCEeeeecCC
Confidence            3455555 455888999888887665553 1   1111 1122 34444433 34     89999999999998887733


Q ss_pred             Cce------EEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCC-------cceEEEec--CCCcEEEEeecCCC
Q 014007          176 SEV------RSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANP-------KGLCAVSQ--GVGSLVLVCPGLQK  238 (432)
Q Consensus       176 ~~v------~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~g~~d  238 (432)
                      .+.      ...... ++.+++  .++.+..+|..+|+.+.........       ...+..+|  .++.+++..   .+
T Consensus       190 ~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~  265 (394)
T PRK11138        190 VPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YN  265 (394)
T ss_pred             CCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE---cC
Confidence            221      111222 233333  3788999999998876554321100       00011111  234444432   57


Q ss_pred             CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE
Q 014007          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (432)
Q Consensus       239 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  318 (432)
                      |.+..+|..++...-..... ....+..  .+..|+.++.+|. |..+|..+++.+-....... ....+...  .+.+|
T Consensus       266 g~l~ald~~tG~~~W~~~~~-~~~~~~~--~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l  338 (394)
T PRK11138        266 GNLVALDLRSGQIVWKREYG-SVNDFAV--DGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYL  338 (394)
T ss_pred             CeEEEEECCCCCEEEeecCC-CccCcEE--ECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEE--ECCEE
Confidence            89999998886543222111 1112222  4567788888999 99999999987654432111 11222222  24567


Q ss_pred             EEEeCCCeEEEEEecCCC
Q 014007          319 AVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       319 ~~~~~dg~i~iwd~~~~~  336 (432)
                      +.++.+|.|++.|..+++
T Consensus       339 ~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        339 VVGDSEGYLHWINREDGR  356 (394)
T ss_pred             EEEeCCCEEEEEECCCCC
Confidence            788899999999999987

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.81  E-value=6.8e-08  Score=83.76  Aligned_cols=158  Identities=9%  Similarity=0.061  Sum_probs=98.5

Q ss_pred             EEEecCCCcEEEEeecCCCCcEEEEEccCCc--eeee--eccCCceeEEEEcCCCCEEEEEcC---CCceEEEEECCCCc
Q 014007          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFI--MAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGT  292 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~--~~~~~~i~~~~~sp~~~~l~~~~~---dg~~i~vwd~~~~~  292 (432)
                      +..++.++.++++.   .+....+++++...  .+.+  ..-...-+++.|..+......+..   ... +.+|....+.
T Consensus        68 ~~~s~~~~llAv~~---~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~-~di~s~~~~~  143 (390)
T KOG3914|consen   68 VLTSDSGRLVAVAT---SSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYS-FDILSADSGR  143 (390)
T ss_pred             cccCCCceEEEEEe---CCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCcee-eeeecccccC
Confidence            44555555444332   44555566665533  1111  112223344444444444444333   334 5666655566


Q ss_pred             eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee
Q 014007          293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS  372 (432)
Q Consensus       293 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (432)
                      +...+-   |-.-++.++|+||+++|+++..|..|+|-.....-.+..+                               
T Consensus       144 ~~~~lG---hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-------------------------------  189 (390)
T KOG3914|consen  144 CEPILG---HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-------------------------------  189 (390)
T ss_pred             cchhhh---hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-------------------------------
Confidence            554443   7789999999999999999999999999877654322111                               


Q ss_pred             eEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       373 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                         .-+|..-|..++.-++ ..|+++|.|++|++|++  .+|+.+....
T Consensus       190 ---clGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~--~sgk~L~t~d  232 (390)
T KOG3914|consen  190 ---CLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI--TSGKLLDTCD  232 (390)
T ss_pred             ---ccccHhheeeeeeccC-ceeeecCCCCcEEEEec--ccCCcccccc
Confidence               3368888999988654 66999999999999998  4455554443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.79  E-value=3.1e-08  Score=84.12  Aligned_cols=154  Identities=15%  Similarity=0.173  Sum_probs=114.9

Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-----ce
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-----TL  293 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-----~~  293 (432)
                      .++|+-+-....++ .| .+..|-+-|+.++..+.+. ..+.|.++.|...++++..|..+|. |...|++.+     .+
T Consensus       216 ~CawSlni~gyhfs-~G-~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~~~~  291 (425)
T KOG2695|consen  216 SCAWSLNIMGYHFS-VG-LSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGNGWC  291 (425)
T ss_pred             hhhhhhccceeeec-cc-ccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCCCcc
Confidence            34666443333322 34 5778888898888777766 6788999999998999999999999 999999864     56


Q ss_pred             EEEEEeCCCcCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee
Q 014007          294 LQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS  372 (432)
Q Consensus       294 ~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (432)
                      ...+.   |...|+++..-. ++++|.+.+.+|+|++||.+-.++-+                                .
T Consensus       292 a~rly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--------------------------------~  336 (425)
T KOG2695|consen  292 AQRLY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK--------------------------------S  336 (425)
T ss_pred             eEEEE---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc--------------------------------c
Confidence            66666   778899988766 78899999999999999998766421                                1


Q ss_pred             eEEEEecCCCceE--EEEccCCCEEEEEecCCeEEEEEecC
Q 014007          373 VAQFRLVEGSPYI--VAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       373 ~~~~~~~~~~v~~--~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +.+..+|.+.-.-  +...+....+++++.|-..+||.++.
T Consensus       337 V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  337 VMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             eeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence            3455566432222  23345667888999999999999964

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.79  E-value=2.4e-06  Score=80.49  Aligned_cols=226  Identities=8%  Similarity=-0.020  Sum_probs=141.2

Q ss_pred             cCCCCEEEEEcC-Cc-EEEEEcCCCeeEEEeecccCcceeEEEEeee--CCeEEEecCCCCC-------------CCCCC
Q 014007           94 NQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDP-------------QYPLN  156 (432)
Q Consensus        94 s~~~~~l~~~~~-~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~-------------~~~~~  156 (432)
                      .-||++|..-.. ++ |...+++..+......+.  ....+..+.+.  |+..+++.++...             .--.+
T Consensus       138 ~ydGr~~findk~n~Rvari~l~~~~~~~i~~iP--n~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~  215 (635)
T PRK02888        138 TYDGRYLFINDKANTRVARIRLDVMKCDKITELP--NVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRS  215 (635)
T ss_pred             ccceeEEEEecCCCcceEEEECccEeeceeEeCC--CccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeE
Confidence            347888888773 33 666666655554333333  22223333332  3333333222210             00126


Q ss_pred             eEEEEeCCCCceeEEeecCCceEEEEEecCccEEEeC-------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (432)
                      .+.+.|.++.+...++...+....++++++|.++++.       .++...+..+...+..+...    ..-++.++|+..
T Consensus       216 ~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----~iea~vkdGK~~  291 (635)
T PRK02888        216 LFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----RIEEAVKAGKFK  291 (635)
T ss_pred             EEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----HHHHhhhCCCEE
Confidence            7888888888888888766677888999999988742       23444443332222222110    112445577755


Q ss_pred             EEEeecCCCCcEEEEEccC-----CceeeeeccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCCce----------
Q 014007          230 VLVCPGLQKGQVRVEHYAS-----KRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTL----------  293 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~-----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~~~----------  293 (432)
                      ++     .++.|.+.|..+     ..+.....-......++++|||+++++++. +.+ |.|.|+.+.+.          
T Consensus       292 ~V-----~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~~~~  365 (635)
T PRK02888        292 TI-----GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIKPRD  365 (635)
T ss_pred             EE-----CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCCccc
Confidence            53     247899999887     345555556778899999999999887665 667 99999987552          


Q ss_pred             --EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          294 --LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       294 --~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                        +.+...+   ......+|.++|....+-.-|..|..|++..
T Consensus       366 ~vvaevevG---lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        366 AVVAEPELG---LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEEEeeccC---CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence              4444422   3456789999998887888899999999987

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=2.7e-07  Score=87.42  Aligned_cols=103  Identities=11%  Similarity=0.195  Sum_probs=78.4

Q ss_pred             EEEEcCCCCEEEEEc----CCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007           90 HISFNQDHGCFAAGT----DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~----~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      -..|+|...+||+++    .+| |.||- ++++..  ....  ....+.+++|+|....++.|-.-     |.+.+|...
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq--r~Vt--~P~hatSLCWHpe~~vLa~gwe~-----g~~~v~~~~   89 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ--RDVT--YPVHATSLCWHPEEFVLAQGWEM-----GVSDVQKTN   89 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCC--cccc--cceehhhhccChHHHHHhhcccc-----ceeEEEecC
Confidence            358999999999886    344 88884 455533  3332  44566779999999999999887     999999976


Q ss_pred             CCceeEEee-cCCceEEEEEecCccEEEe-C--CeEEEEEcC
Q 014007          165 QSRCIGELS-FRSEVRSVKLRRDRIIVVL-E--QKIFVYNFA  202 (432)
Q Consensus       165 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-d--~~i~i~d~~  202 (432)
                      +.+.-.... |+.+|..+.|+++|..+.+ |  |.|.+|...
T Consensus        90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            655444333 9999999999999998885 3  688999765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=4.5e-07  Score=79.89  Aligned_cols=248  Identities=15%  Similarity=0.084  Sum_probs=170.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCC-CeeEEEeecccCcceeEEEEeeeCCeEEEecCCC-CCCCCCCe
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNK  157 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~  157 (432)
                      ...|.+.|+.+.-+. .+++.+++ |+.++.|.-.. ....+.+.+. .|...+.+++.+-++..+.+.+. |     ..
T Consensus         5 symhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~D-----hs   77 (558)
T KOG0882|consen    5 SYMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVEDPD-----HS   77 (558)
T ss_pred             hhcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeeccCcc-----cc
Confidence            345888888866554 56778887 66699998644 2233334444 57788888888999999999666 7     99


Q ss_pred             EEEEeCCCCceeEEeecCCceEEEEEec-Cc--c-EEE-e---CCeEEEEEcCCC--eeeEEEeeccCCcceEEEecCCC
Q 014007          158 VMIWDDHQSRCIGELSFRSEVRSVKLRR-DR--I-IVV-L---EQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~--~-~~~-~---d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                      ++++|+++-..+.-++.......+.|.. .|  . .++ +   ++.+.++|-...  +....-..|..++..+.+.+.++
T Consensus        78 ~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D  157 (558)
T KOG0882|consen   78 VKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD  157 (558)
T ss_pred             eeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence            9999998776554444222222233322 22  1 222 2   788999996543  23333456788999999999887


Q ss_pred             cEEEEeecCCCCcEEEEEccC------Cce----------eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC
Q 014007          228 SLVLVCPGLQKGQVRVEHYAS------KRT----------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~------~~~----------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~  291 (432)
                      ...   +....|.|.-|....      ..+          ..+........++.|+|+|..+.+-+.|.. |++++++++
T Consensus       158 s~v---SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtG  233 (558)
T KOG0882|consen  158 SAV---SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTG  233 (558)
T ss_pred             cee---eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccc
Confidence            553   344679999998874      111          112234556889999999999999999999 999999998


Q ss_pred             ceEEEEEeC-------------------------------CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCC
Q 014007          292 TLLQEVRRG-------------------------------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (432)
Q Consensus       292 ~~~~~~~~~-------------------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  340 (432)
                      ++++.+...                               .....-+.+.|...|++|+-++-=| |++.++.+++....
T Consensus       234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri  312 (558)
T KOG0882|consen  234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI  312 (558)
T ss_pred             hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence            766654320                               0112345678888999999888666 89999999885543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.75  E-value=1e-07  Score=88.91  Aligned_cols=206  Identities=12%  Similarity=0.125  Sum_probs=143.7

Q ss_pred             EeecCCceEEEEEecCccEEE--eCCeEEEEEcCC-CeeeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEc
Q 014007          171 ELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFAD-LKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY  246 (432)
Q Consensus       171 ~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~  246 (432)
                      .++..+.+.++.++|.|+-++  +.-.+.+.|+.. +.+..-+. ...-.+..+.|++....-+-+.+ .....-.+|++
T Consensus        20 sl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwnl   98 (1081)
T KOG0309|consen   20 SLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWNL   98 (1081)
T ss_pred             EEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe-cCcchhhhhhh
Confidence            445678888999999887666  455677888765 23322221 11234556778877654333322 24455668887


Q ss_pred             cCC---ce-eeeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCce-EEEEEeCCCcCceEEEEECCCCCEEEE
Q 014007          247 ASK---RT-KFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAEIYSLAFSSNAQWLAV  320 (432)
Q Consensus       247 ~~~---~~-~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~  320 (432)
                      ...   .+ ..+.+|...|+.+.|+|. ...|++++.|.. +..||+++... +..+..  -......+.|+.....+.+
T Consensus        99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~-vh~wd~rSp~~p~ys~~~--w~s~asqVkwnyk~p~vla  175 (1081)
T KOG0309|consen   99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY-VHAWDMRSPHRPFYSTSS--WRSAASQVKWNYKDPNVLA  175 (1081)
T ss_pred             hcCCccceEEEEecCccceeccccCCCCCcceeecccccc-ceeeeccCCCcceeeeec--ccccCceeeecccCcchhh
Confidence            652   22 345689999999999985 467899999999 99999998643 333332  2256678999876656666


Q ss_pred             EeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc-CCCEEEEEe
Q 014007          321 SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH-QKNTVVILG  399 (432)
Q Consensus       321 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~  399 (432)
                      .+..+.|++||++.+...                                  +..+++|-..|+.++|.. ....+.+.+
T Consensus       176 sshg~~i~vwd~r~gs~p----------------------------------l~s~K~~vs~vn~~~fnr~~~s~~~s~~  221 (1081)
T KOG0309|consen  176 SSHGNDIFVWDLRKGSTP----------------------------------LCSLKGHVSSVNSIDFNRFKYSEIMSSS  221 (1081)
T ss_pred             hccCCceEEEeccCCCcc----------------------------------eEEecccceeeehHHHhhhhhhhhcccC
Confidence            677888999999987632                                  456777888888898876 445788999


Q ss_pred             cCCeEEEEEecCCCC
Q 014007          400 MDGSFYRCQFDPVNG  414 (432)
Q Consensus       400 ~dg~v~iw~~~~~~~  414 (432)
                      .||+|+.|+.+-.+.
T Consensus       222 ~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  222 NDGTVKFWDYSKSTT  236 (1081)
T ss_pred             CCCceeeeccccccc
Confidence            999999999876543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.74  E-value=8.1e-08  Score=91.58  Aligned_cols=174  Identities=16%  Similarity=0.150  Sum_probs=124.7

Q ss_pred             CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCC
Q 014007          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ  271 (432)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~  271 (432)
                      ...+..+|+++.+..+........+  .-+..+++.+  . +|...|+|.+-|.++ ..+.++.+|.+.|..+..  .|+
T Consensus       156 Q~~li~~Dl~~~~e~r~~~v~a~~v--~imR~Nnr~l--f-~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GN  228 (1118)
T KOG1275|consen  156 QEKLIHIDLNTEKETRTTNVSASGV--TIMRYNNRNL--F-CGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGN  228 (1118)
T ss_pred             hhheeeeecccceeeeeeeccCCce--EEEEecCcEE--E-eecccceEEeecCCcCceeeeeeccccceeeeec--cCC
Confidence            5578888998887766655444343  3344454433  3 467899999999998 667889999999988665  788


Q ss_pred             EEEEEcCC---------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCCCCCC
Q 014007          272 LLATSSTK---------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLKVNSGSARS  341 (432)
Q Consensus       272 ~l~~~~~d---------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~  341 (432)
                      .|++++..         .- |+|||++..+.+.-+..+   ....-+.|.|. ...+++++..|...+-|..+......-
T Consensus       229 lLitCG~S~R~~~l~~D~F-vkVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~  304 (1118)
T KOG1275|consen  229 LLITCGYSMRRYNLAMDPF-VKVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG  304 (1118)
T ss_pred             eEEEeecccccccccccch-hhhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEecccceeeccccccCCCccc
Confidence            99998864         44 899999998877766643   23356778885 356888888999999995543321100


Q ss_pred             CCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          342 EPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                                                     +..+..-...+..+.+|++++.++.|..+|.|.+|.
T Consensus       305 -------------------------------~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  305 -------------------------------VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             -------------------------------eeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence                                           111122223488999999999999999999999998

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.73  E-value=0.00013  Score=65.12  Aligned_cols=219  Identities=11%  Similarity=-0.029  Sum_probs=107.2

Q ss_pred             EEcCCCCEEEEEc--CCc--EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007           92 SFNQDHGCFAAGT--DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        92 ~~s~~~~~l~~~~--~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      +|.+||+.|+.++  ++.  +.+.|+++++.......   ..........+++...++-....     ..|+..|+.+.+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg---~g~~~~g~~~s~~~~~~~Yv~~~-----~~l~~vdL~T~e  113 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG---PGDNTFGGFLSPDDRALYYVKNG-----RSLRRVDLDTLE  113 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S---S-B-TTT-EE-TTSSEEEEEETT-----TEEEEEETTT--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC---CCCCccceEEecCCCeEEEEECC-----CeEEEEECCcCc
Confidence            6788998766555  333  77778888766533222   11111123334444444322122     688999999988


Q ss_pred             eeEEee-cCCceEEEEEe--cCccEEEe-------------------------CCeEEEEEcCCCeeeEEEeeccCCcce
Q 014007          168 CIGELS-FRSEVRSVKLR--RDRIIVVL-------------------------EQKIFVYNFADLKLLHQIETIANPKGL  219 (432)
Q Consensus       168 ~~~~~~-~~~~v~~~~~~--~~~~~~~~-------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~  219 (432)
                      ....+. ...-+-...|.  .|+..++.                         ...|...|+.+|+....+. ....+..
T Consensus       114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH  192 (386)
T PF14583_consen  114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGH  192 (386)
T ss_dssp             EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEE
T ss_pred             EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccC
Confidence            766666 33334334553  45655541                         2357777888877654443 4556678


Q ss_pred             EEEecCCCcEEEEee-cCCC---CcEEEEEccCCceeeeeccC--CceeEEEEcCCCCEEEEEc-----CCCceEEEEEC
Q 014007          220 CAVSQGVGSLVLVCP-GLQK---GQVRVEHYASKRTKFIMAHD--SRIACFALTQDGQLLATSS-----TKGTLVRIFNT  288 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~-g~~d---~~i~i~d~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~-----~dg~~i~vwd~  288 (432)
                      +.++|....++..|- |..+   ..|.+.+.++...+.+..+.  ..+.-=-|.|||..|.--+     .+.. |.-+|.
T Consensus       193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~d~  271 (386)
T PF14583_consen  193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGYDP  271 (386)
T ss_dssp             EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE-T
T ss_pred             cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEeeCC
Confidence            899998877766652 2222   34444444444444443332  3344556899998776422     2334 777888


Q ss_pred             CCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC
Q 014007          289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK  324 (432)
Q Consensus       289 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  324 (432)
                      .+++.......    .....+.-++||++++-=+.|
T Consensus       272 ~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  272 DTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred             CCCCceEEEeC----CceeeeEEcCCCCEEEecCCC
Confidence            88866543332    235567778999987653333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.71  E-value=6.3e-06  Score=76.49  Aligned_cols=219  Identities=14%  Similarity=0.177  Sum_probs=120.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      .......+.++|+|+++++++++...||.....+..        .......+.|.+++.+.+--. .     ++|.++.-
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k--------~~G~g~~~vw~~~n~yAv~~~-~-----~~I~I~kn   96 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK--------AFGSGLSFVWSSRNRYAVLES-S-----STIKIYKN   96 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE--------EEEE-SEEEE-TSSEEEEE-T-T-----S-EEEEET
T ss_pred             CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc--------ccCceeEEEEecCccEEEEEC-C-----CeEEEEEc
Confidence            344578899999999999988888888874433332        223445667777665444433 4     78999743


Q ss_pred             CCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       164 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (432)
                      -+.+....+.....+..+-.   |.+++  .++.|.+||+.+++.+..+...  ++..+.|+++++.+++++    +..+
T Consensus        97 ~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i  167 (443)
T PF04053_consen   97 FKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSI  167 (443)
T ss_dssp             TEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SE
T ss_pred             CccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeE
Confidence            33333344543334444433   66666  3667999999999999998753  378899999999887764    5678


Q ss_pred             EEEEccCC------------ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007          242 RVEHYASK------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (432)
Q Consensus       242 ~i~d~~~~------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~  309 (432)
                      .+++.+..            ....+..-...|.+..|..+  .++-.+.. . |+.+  -.|+.. .+..  -..++.=+
T Consensus       168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl--~~Ge~~-~i~~--ld~~~yll  238 (443)
T PF04053_consen  168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYL--VNGETG-IIAH--LDKPLYLL  238 (443)
T ss_dssp             EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEE--ETTEEE-EEEE---SS--EEE
T ss_pred             EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEE--EcCCcc-eEEE--cCCceEEE
Confidence            88776655            45555544678888899765  44444444 5 7763  344332 2221  22466667


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecC
Q 014007          310 AFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       310 ~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      .+.+....+.....|+.|..+.+..
T Consensus       239 gy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  239 GYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEETTTTEEEEE-TT--EEEEE--H
T ss_pred             EEEccCCEEEEEECCCCEEEEEECH
Confidence            7777777888888888888887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.70  E-value=1.3e-05  Score=74.26  Aligned_cols=176  Identities=11%  Similarity=0.087  Sum_probs=116.5

Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe-----C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-----E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                      ..+.+-|.. +.....+. ....+..-+|+|++..++.     .  ..++++++.+++....+. ........+|+|||+
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~  250 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS  250 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence            566666654 65555665 5667778899999887662     2  369999999887655554 334445789999999


Q ss_pred             cEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCc--eEEEEECCCCceEEEEEeCCCcCc
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVRRGADRAE  305 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~--~i~vwd~~~~~~~~~~~~~~~~~~  305 (432)
                      .+++.......-.|.++|+.++....+....+.-..-.|+|||+.|+..+..+.  .|.+.|...+.. ..+....  ..
T Consensus       251 ~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~--~~  327 (425)
T COG0823         251 KLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG--GG  327 (425)
T ss_pred             EEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC--CC
Confidence            888876554455566778877766555544444457789999999887665442  167777665554 3333221  22


Q ss_pred             eEEEEECCCCCEEEEEeC-CCe--EEEEEecCCC
Q 014007          306 IYSLAFSSNAQWLAVSSD-KGT--VHVFNLKVNS  336 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~~-dg~--i~iwd~~~~~  336 (432)
                      -..-.|+|||++|+..+. +|.  |.+.|+.++.
T Consensus       328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            237889999999987764 344  5555555443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.67  E-value=1.1e-07  Score=55.90  Aligned_cols=36  Identities=22%  Similarity=0.183  Sum_probs=34.2

Q ss_pred             eEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       373 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      +.++.+|.+.|++++|+|++++|++++.||.|++|+
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            567899999999999999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=1.3e-07  Score=80.34  Aligned_cols=143  Identities=10%  Similarity=0.127  Sum_probs=108.3

Q ss_pred             CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-----ceeeeeccCCceeEEEEc
Q 014007          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----RTKFIMAHDSRIACFALT  267 (432)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-----~~~~~~~~~~~i~~~~~s  267 (432)
                      +..|-+-|+.+|-. +.+. ....|....|...++.  +. .|..+|.|..+|++.+     ......-|.+.|+++..-
T Consensus       233 sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nL--v~-~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L  307 (425)
T KOG2695|consen  233 SQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNL--VF-NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL  307 (425)
T ss_pred             cceeEEEEeecccc-cccc-cchhHHHHHhcccCCe--eE-ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence            66788888877643 3333 4556666677665552  23 4679999999999874     223334589999999887


Q ss_pred             C-CCCEEEEEcCCCceEEEEECCCCce---EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCC
Q 014007          268 Q-DGQLLATSSTKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS  341 (432)
Q Consensus       268 p-~~~~l~~~~~dg~~i~vwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  341 (432)
                      . ++.+|++.+.+|+ |++||++--++   +..+.+|.....-.-+-..+....++++++|-..+||.++.+..+.++
T Consensus       308 q~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             ccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            7 8889999999999 99999998877   889998765555555566777788889999999999999998865444

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.67  E-value=1.7e-07  Score=76.68  Aligned_cols=138  Identities=13%  Similarity=0.148  Sum_probs=88.4

Q ss_pred             cCCCCcEEEEEccCCc--eeeeeccCCceeEEEEcCCCCEEEEEc------CCCceEEEEECCCCceEEEEEeCCCcCce
Q 014007          235 GLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSS------TKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~------~dg~~i~vwd~~~~~~~~~~~~~~~~~~i  306 (432)
                      +..||.+.+++.+...  ...+..-...-.+.++...++++.++.      .| . .+.|+++..+.+..-..  ....|
T Consensus       107 ~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d-~-~~a~~~~p~~t~~~~~~--~~~~v  182 (319)
T KOG4714|consen  107 GYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD-N-FYANTLDPIKTLIPSKK--ALDAV  182 (319)
T ss_pred             cCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc-c-eeeeccccccccccccc--ccccc
Confidence            5589999999887611  111111111112222333444444332      23 2 56777655443322221  12458


Q ss_pred             EEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007          307 YSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI  385 (432)
Q Consensus       307 ~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  385 (432)
                      .+++-+|.. +.+++|+.||.+.+||.++....                                  ...++.|+..++.
T Consensus       183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----------------------------------~S~l~ahk~~i~e  228 (319)
T KOG4714|consen  183 TALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----------------------------------VSLLKAHKAEIWE  228 (319)
T ss_pred             hhhhCCcccccEEEEecCCCeEEEEEcccccch----------------------------------HHHHHHhhhhhhh
Confidence            999999854 56677889999999999987522                                  2246778999999


Q ss_pred             EEEcc-CCCEEEEEecCCeEEEEEec
Q 014007          386 VAFGH-QKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       386 ~~~s~-~~~~l~~~~~dg~v~iw~~~  410 (432)
                      +-|+| ++..|+++++||.+..|+-.
T Consensus       229 V~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  229 VHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             eeccCCCchheeEecCCCcEEEEcCC
Confidence            99999 78899999999999888754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.66  E-value=1e-07  Score=55.98  Aligned_cols=39  Identities=31%  Similarity=0.581  Sum_probs=35.2

Q ss_pred             CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  331 (432)
                      ++++.++.+  |...|.+|+|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~--h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRG--HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEES--SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcC--CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357778885  679999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.63  E-value=1.1e-07  Score=90.57  Aligned_cols=215  Identities=13%  Similarity=0.115  Sum_probs=146.9

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      .....|....+|++|+-+.+.|++|+-.| |++|++.++...  .... .|+..++.+..+.++....+.+.-   +.-.
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--~s~n-cH~SavT~vePs~dgs~~Ltsss~---S~Pl 1168 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--ESVN-CHQSAVTLVEPSVDGSTQLTSSSS---SSPL 1168 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc--cccc-ccccccccccccCCcceeeeeccc---cCch
Confidence            55667788999999999999999999655 999999988766  3443 699999999988888766554432   1135


Q ss_pred             EEEEeCCC-CceeEEeecCCceEEEEEecCccEEE--e-CCeEEEEEcCCCeeeEEEee----ccCCcceEEEecCCCcE
Q 014007          158 VMIWDDHQ-SRCIGELSFRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIET----IANPKGLCAVSQGVGSL  229 (432)
Q Consensus       158 v~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  229 (432)
                      ..+|+... +.....|.   .-.++.|+.....-+  . .....+||+.++..+.++-.    ..-..+...|+|+...+
T Consensus      1169 saLW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             HHHhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            78999754 33444443   335677776533322  3 46789999999877665311    12223568899987632


Q ss_pred             EEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007          230 VLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  308 (432)
                        .    .||  .+||++.. .++.+......+ .-.|+|.|..++.-+      .|||+++.+.++....    -.-+.
T Consensus      1246 --l----ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~----Ldqc~ 1306 (1516)
T KOG1832|consen 1246 --L----NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS------EIWDMRTFKLLHSVPS----LDQCA 1306 (1516)
T ss_pred             --e----eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec------hhhhhHHHHHHhcCcc----ccceE
Confidence              2    456  47999884 344444333222 335999999887743      5999999998887763    23467


Q ss_pred             EEECCCCCEEEEE
Q 014007          309 LAFSSNAQWLAVS  321 (432)
Q Consensus       309 ~~~s~~~~~l~~~  321 (432)
                      +.|+..|..++..
T Consensus      1307 VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYAM 1319 (1516)
T ss_pred             EEeccCccchhhh
Confidence            8898888876544

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.63  E-value=0.00013  Score=67.79  Aligned_cols=220  Identities=16%  Similarity=0.188  Sum_probs=117.7

Q ss_pred             EEEcCCCCEEEEEcCC------------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           91 ISFNQDHGCFAAGTDH------------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        91 ~~~s~~~~~l~~~~~~------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      ++.+|.|..+|...+.            .|+||+... +......+.  + ..+..+.|..+...++.. .|     |.+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~--~-~~iv~~~wt~~e~LvvV~-~d-----G~v  103 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWD--S-GRIVGMGWTDDEELVVVQ-SD-----GTV  103 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEEC--C-CCEEEEEECCCCeEEEEE-cC-----CEE
Confidence            4556666666666544            488888653 444334453  3 789999998875555444 33     999


Q ss_pred             EEEeCCCCce-------eEEee-cCCceEEEEEecCccEEEe-CCeEEEEEcCCCe-eeEEEeeccCCcc----------
Q 014007          159 MIWDDHQSRC-------IGELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLK-LLHQIETIANPKG----------  218 (432)
Q Consensus       159 ~iwd~~~~~~-------~~~~~-~~~~v~~~~~~~~~~~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~----------  218 (432)
                      ++||+. |+.       +.... ....+....+..+|..+.+ ++.+++.+--... ..+.+........          
T Consensus       104 ~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~  182 (410)
T PF04841_consen  104 RVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTV  182 (410)
T ss_pred             EEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccccccc
Confidence            999975 333       11111 1222333344456765553 5555544322211 1111111000000          


Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~  298 (432)
                      ...++.+....+++.   .++.+.+.+-..-  ..+ ...+++..|++||+|++||.-..+|. +.+.+..-.+.+.++.
T Consensus       183 i~~l~~~~~~~i~~~---~g~~i~~i~~~~~--~~i-~~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  183 IPLLSSDRVVEILLA---NGETIYIIDENSF--KQI-DSDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFD  255 (410)
T ss_pred             ceEeecCcceEEEEe---cCCEEEEEEcccc--ccc-cCCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEee
Confidence            012222322222222   2234443222111  011 12468999999999999999999999 9998876666777776


Q ss_pred             eCCCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007          299 RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       299 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  331 (432)
                      .. .......|.|.-+...++.-  ...|.+..
T Consensus       256 ~~-~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  256 TD-SKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             cC-cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            54 23566788887665433333  34455554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.58  E-value=0.00011  Score=73.18  Aligned_cols=237  Identities=12%  Similarity=0.083  Sum_probs=144.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw  161 (432)
                      ...+.|.++.|..++.-+..+...| |.+-|.++......    +.-..+|.++.|++|...++-....     +++.+-
T Consensus        66 ~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv----g~vd~GI~aaswS~Dee~l~liT~~-----~tll~m  136 (1265)
T KOG1920|consen   66 DGDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV----GNVDNGISAASWSPDEELLALITGR-----QTLLFM  136 (1265)
T ss_pred             CCCcceEEEEEecccceEEEEecCCcEEEEcccccceeee----eeccCceEEEeecCCCcEEEEEeCC-----cEEEEE
Confidence            3447999999999988777777555 77777666554432    2356788999999987665544433     455544


Q ss_pred             eCC----C-------------------CceeEEee----------------------cCCceEEEEEecCccEEEe----
Q 014007          162 DDH----Q-------------------SRCIGELS----------------------FRSEVRSVKLRRDRIIVVL----  192 (432)
Q Consensus       162 d~~----~-------------------~~~~~~~~----------------------~~~~v~~~~~~~~~~~~~~----  192 (432)
                      +-.    .                   |+....+.                      ..+.=..+.|.-||.+++.    
T Consensus       137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~  216 (1265)
T KOG1920|consen  137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE  216 (1265)
T ss_pred             eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence            310    0                   01001111                      0111234889999988883    


Q ss_pred             ---C-CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee----eeeccCCceeEE
Q 014007          193 ---E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FIMAHDSRIACF  264 (432)
Q Consensus       193 ---d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----~~~~~~~~i~~~  264 (432)
                         + ..|++||-+ |.+-..-......-.+++|-|.|..+..+-....|+.|.+|.-++-+..    .+......+..+
T Consensus       217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L  295 (1265)
T KOG1920|consen  217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL  295 (1265)
T ss_pred             ccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence               5 689999965 5443332223334457899998876655444456778999986663222    123334459999


Q ss_pred             EEcCCCCEEEE---EcCCCceEEEEECCCCceE--EEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecC
Q 014007          265 ALTQDGQLLAT---SSTKGTLVRIFNTLDGTLL--QEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       265 ~~sp~~~~l~~---~~~dg~~i~vwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~  334 (432)
                      +|+.++..|++   ...... |++|-+.+..-.  +.+..   +.. .-+.|+|... .|..-..+|...++|..-
T Consensus       296 ~Wns~sdiLAv~~~~~e~~~-v~lwt~~NyhWYLKq~l~~---~~~-~~~~W~p~~~~~L~v~~~sG~~~v~~~~~  366 (1265)
T KOG1920|consen  296 AWNSNSDILAVVTSNLENSL-VQLWTTGNYHWYLKQELQF---SQK-ALLMWDPVTEKTLHVLRESGQRLVRDFAW  366 (1265)
T ss_pred             eecCCCCceeeeecccccce-EEEEEecCeEEEEEEEEec---ccc-ccccccCCCceeEEEEecCCcEEEEEEEE
Confidence            99999999988   556666 999987765322  22221   111 1288988432 344444677777766643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.49  E-value=1.7e-05  Score=73.43  Aligned_cols=182  Identities=15%  Similarity=0.155  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC-CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEE
Q 014007          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL  273 (432)
Q Consensus       195 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l  273 (432)
                      .+.+-|.. +...+.+......+..-+|++++..+....--... ..+.++|+.++....+....+.-..-+|+|||+.|
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l  252 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence            34444432 44444444444555667889998876554322122 46899999986665555455556677899999987


Q ss_pred             EEEc-CCCc-eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCe--EEEEEecCCCCCCCCCCCCCCC
Q 014007          274 ATSS-TKGT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGT--VHVFNLKVNSGSARSEPRSTSD  348 (432)
Q Consensus       274 ~~~~-~dg~-~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~  348 (432)
                      +.+. .||. .|++.|+..++..+ +...  .+.-..-.|+|||++|+-.+ ..|.  |.+++.+....           
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~--~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-----------  318 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKNLPR-LTNG--FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-----------  318 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCccee-cccC--CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----------
Confidence            7654 4443 27788887777443 4422  23344778999999988766 4454  55555555441           


Q ss_pred             CCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec-CCeEEEEEecCCCCCc
Q 014007          349 PTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM-DGSFYRCQFDPVNGGE  416 (432)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~  416 (432)
                                               ..+....+.-..-.|+|||++|+..+. +|...|...++..+..
T Consensus       319 -------------------------~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         319 -------------------------TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             -------------------------eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence                                     112222222236789999999987775 4655555566665554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.47  E-value=1.5e-05  Score=73.53  Aligned_cols=135  Identities=15%  Similarity=0.247  Sum_probs=90.1

Q ss_pred             eEEEEEcCCC--eeeEEEeeccCCcceEEEecCCCcEEEEee--cCCCCcE----EEEEccCCceeee----eccCCcee
Q 014007          195 KIFVYNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCP--GLQKGQV----RVEHYASKRTKFI----MAHDSRIA  262 (432)
Q Consensus       195 ~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~d~~i----~i~d~~~~~~~~~----~~~~~~i~  262 (432)
                      .+.++.+..+  +.+..++...+++ .+.|+-...+.+....  -+.+|.+    .+|+....+++..    ......|.
T Consensus       185 Nl~L~~~~~~klEvL~yirTE~dPl-~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~  263 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSYIRTENDPL-DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI  263 (545)
T ss_pred             cEEEEEecCCcEEEEEEEEecCCcE-EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence            3555554433  2333444444443 5677764444433321  1123433    3466655444322    35788899


Q ss_pred             EEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       263 ~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      +++++|+...|+.|+.||. |.+||...+..... +   ..-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       264 ~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~-k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  264 CCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA-K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEecCcccceEEEEecCCe-EEEEEcCCCeeeee-e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            9999999999999999999 99999766643322 3   3356789999999999999999999999998754

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.46  E-value=0.00058  Score=64.27  Aligned_cols=244  Identities=12%  Similarity=0.102  Sum_probs=136.2

Q ss_pred             CeEEEEEcCCCCEEEEEc-C-Cc----EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC------
Q 014007           87 TLLHISFNQDHGCFAAGT-D-HG----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP------  154 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~-~-~~----i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~------  154 (432)
                      .+....+||||++||.+- . +.    ++++|+++++... ..+.   ......+.|.+++..++....+....      
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccc---ccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            344678999999998774 2 22    9999999886542 2222   12222388888855544333221111      


Q ss_pred             CCeEEEEeCCCCcee--EEee--cCCc-eEEEEEecCccEEEe------C-CeEEEEEcCCC----eeeEEEeeccCCcc
Q 014007          155 LNKVMIWDDHQSRCI--GELS--FRSE-VRSVKLRRDRIIVVL------E-QKIFVYNFADL----KLLHQIETIANPKG  218 (432)
Q Consensus       155 ~~~v~iwd~~~~~~~--~~~~--~~~~-v~~~~~~~~~~~~~~------d-~~i~i~d~~~~----~~~~~~~~~~~~~~  218 (432)
                      +..|+.|.+.+....  ..+.  .... ...+..++|+++++.      + ..+++.++..+    .....+......+.
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence            367999998877433  3444  2233 668889999998872      4 57899998774    23344433333332


Q ss_pred             eEEEecCCCcEEEEee-cCCCCcEEEEEccCCc----eeeeeccCCceeEEEEcCCCCEEEEEc-CCCc-eEEEEECCCC
Q 014007          219 LCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSS-TKGT-LVRIFNTLDG  291 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~----~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~-~i~vwd~~~~  291 (432)
                      ... ...+..+++.+. +..++.|...++....    ...+..+...+.-..+...+.+|+... .++. .|+++|+..+
T Consensus       281 ~~v-~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~  359 (414)
T PF02897_consen  281 YYV-DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG  359 (414)
T ss_dssp             EEE-EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred             EEE-EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence            222 222566666542 2345777777877743    225556665433333334444555443 3332 2889998746


Q ss_pred             ceEEEEEeCCCcCceEEEEECCCCCEEE--EEe--CCCeEEEEEecCCC
Q 014007          292 TLLQEVRRGADRAEIYSLAFSSNAQWLA--VSS--DKGTVHVFNLKVNS  336 (432)
Q Consensus       292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~--~dg~i~iwd~~~~~  336 (432)
                      .....+... ..+.|..+...+++..+.  ..+  .-++++.||+.+++
T Consensus       360 ~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  360 KESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             cEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            666666643 235567777666665443  222  35688999998887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.45  E-value=0.00071  Score=64.85  Aligned_cols=228  Identities=12%  Similarity=0.170  Sum_probs=121.9

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEeecccC---cceeEE--EEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE
Q 014007           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERG---GGIGVV--EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (432)
Q Consensus        96 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~  170 (432)
                      ++++++...++.+.-+|..+++..........   ....+.  .+....++..++ +..+     +.|+-+|.++|+.+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v-~~~~-----g~v~AlD~~TG~~~W  134 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFF-GTFD-----GRLVALDAETGKQVW  134 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEE-ecCC-----CeEEEEECCCCCEee
Confidence            34433433355577778777776654443211   000111  111222133333 3345     899999999999998


Q ss_pred             EeecCCc------eE-EEEEecCccEEE-e----------CCeEEEEEcCCCeeeEEEeeccCC----------------
Q 014007          171 ELSFRSE------VR-SVKLRRDRIIVV-L----------EQKIFVYNFADLKLLHQIETIANP----------------  216 (432)
Q Consensus       171 ~~~~~~~------v~-~~~~~~~~~~~~-~----------d~~i~i~d~~~~~~~~~~~~~~~~----------------  216 (432)
                      .+.....      +. ...+. ++.+++ .          ++.++.+|..+|+.+..++.....                
T Consensus       135 ~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~  213 (488)
T cd00216         135 KFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP  213 (488)
T ss_pred             eecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence            8873332      11 12222 244433 2          467899999999988776542110                


Q ss_pred             ----c-ceEEEecCCCcEEEEeecC---------------CCCcEEEEEccCCceeeee---ccCCc---e-eEEEEc--
Q 014007          217 ----K-GLCAVSQGVGSLVLVCPGL---------------QKGQVRVEHYASKRTKFIM---AHDSR---I-ACFALT--  267 (432)
Q Consensus       217 ----~-~~~~~~~~~~~~~~~~~g~---------------~d~~i~i~d~~~~~~~~~~---~~~~~---i-~~~~~s--  267 (432)
                          + ...++.+.+..+++.+...               .++.|.-+|..+++..-..   .|...   . ....+.  
T Consensus       214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~  293 (488)
T cd00216         214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI  293 (488)
T ss_pred             CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec
Confidence                0 1233444455555543111               1236888888886654321   12110   0 000111  


Q ss_pred             --CCCC---EEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE------------------eCC
Q 014007          268 --QDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS------------------SDK  324 (432)
Q Consensus       268 --p~~~---~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~------------------~~d  324 (432)
                        -+|.   .++.++.+|. +...|.++|+.+......     ...++.+| + .+..+                  ..+
T Consensus       294 ~~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~~~-----~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~  365 (488)
T cd00216         294 KPKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARPEV-----EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGK  365 (488)
T ss_pred             cccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeEee-----ccccccCC-c-eEEEccccccccCcccccCCCCCCCc
Confidence              1333   6788889999 999999999998876532     12234444 2 22222                  235


Q ss_pred             CeEEEEEecCCCCC
Q 014007          325 GTVHVFNLKVNSGS  338 (432)
Q Consensus       325 g~i~iwd~~~~~~~  338 (432)
                      |.|.-.|+.+++.+
T Consensus       366 G~l~AlD~~tG~~~  379 (488)
T cd00216         366 GGLAALDPKTGKVV  379 (488)
T ss_pred             eEEEEEeCCCCcEe
Confidence            77888888888743

The alignment model contains an 8-bladed beta-propeller.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.43  E-value=0.00053  Score=62.04  Aligned_cols=170  Identities=15%  Similarity=0.178  Sum_probs=107.3

Q ss_pred             CeEEEEeCCCCceeEEee--cCCceEEEEEec---C----ccEEEe------------C-CeEEEEEcCCC----eeeEE
Q 014007          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRR---D----RIIVVL------------E-QKIFVYNFADL----KLLHQ  209 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~---~----~~~~~~------------d-~~i~i~d~~~~----~~~~~  209 (432)
                      ..|++.|..+.+.+..+.  ....+.+++.-.   +    ..+++.            . |.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            578999988888887776  455566655332   2    345541            2 88999999884    22222


Q ss_pred             E--eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCC--ceeEEEEcCCCCEEEEEcCCCceEE
Q 014007          210 I--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVR  284 (432)
Q Consensus       210 ~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~~i~  284 (432)
                      +  ....+++.+++--  ++.+ +++.   .+.|.+|++.... +.....+..  .+.++..  .++++++|..... |.
T Consensus        82 i~~~~~~g~V~ai~~~--~~~l-v~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~s-v~  152 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGRL-VVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKS-VS  152 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTEE-EEEE---TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSS-EE
T ss_pred             EEEEeecCcceEhhhh--CCEE-EEee---cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccC-EE
Confidence            2  2235555554444  4444 4443   4899999999877 554443433  4555544  4668999988777 88


Q ss_pred             EEECCC-CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          285 IFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       285 vwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      ++.... .+.+..+........++++.|-++++.++.+..+|.+.++....
T Consensus       153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            775443 44344554433456789999986777999999999999999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=9.7e-06  Score=76.89  Aligned_cols=139  Identities=16%  Similarity=0.180  Sum_probs=102.5

Q ss_pred             cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC
Q 014007          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  314 (432)
                      |+.+|.|++++..... .....|...      .-+|.++++|+.||+ |.|..+.+.+....+.   ...++.+++++|+
T Consensus        55 GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~~~~~~~d---f~rpiksial~Pd  123 (846)
T KOG2066|consen   55 GTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTDDEITQYD---FKRPIKSIALHPD  123 (846)
T ss_pred             ccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCc-EEEeeccCCccceeEe---cCCcceeEEeccc
Confidence            5689999999988766 555555544      568999999999999 9999999888887777   3478999999998


Q ss_pred             -----CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEc
Q 014007          315 -----AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG  389 (432)
Q Consensus       315 -----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  389 (432)
                           .+.+++|+..| +.++.-+=....                                 .-..+...+|.|.++.| 
T Consensus       124 ~~~~~sk~fv~GG~ag-lvL~er~wlgnk---------------------------------~~v~l~~~eG~I~~i~W-  168 (846)
T KOG2066|consen  124 FSRQQSKQFVSGGMAG-LVLSERNWLGNK---------------------------------DSVVLSEGEGPIHSIKW-  168 (846)
T ss_pred             hhhhhhhheeecCcce-EEEehhhhhcCc---------------------------------cceeeecCccceEEEEe-
Confidence                 56888999888 777754322210                                 01124445688999999 


Q ss_pred             cCCCEEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007          390 HQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYN  423 (432)
Q Consensus       390 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  423 (432)
                       .|+++|-++.+| |++|+..  .+..+..+++-
T Consensus       169 -~g~lIAWand~G-v~vyd~~--~~~~l~~i~~p  198 (846)
T KOG2066|consen  169 -RGNLIAWANDDG-VKVYDTP--TRQRLTNIPPP  198 (846)
T ss_pred             -cCcEEEEecCCC-cEEEecc--ccceeeccCCC
Confidence             477999888887 7887764  34555555543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.39  E-value=2.4e-07  Score=88.26  Aligned_cols=190  Identities=8%  Similarity=0.046  Sum_probs=140.9

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe-----CCeEEEEE
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-----EQKIFVYN  200 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-----d~~i~i~d  200 (432)
                      .+....++++|+.+..+++.|.-.     |.|++|++.+|.....+. |...|+-+.-+.||....+     .--..+|+
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~-----Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHA-----GEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeecc-----ceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            567888999999999999998888     999999999999888888 9999999999999877663     22567899


Q ss_pred             cCC-CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eee-e---eccCCceeEEEEcCCCCEEE
Q 014007          201 FAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKF-I---MAHDSRIACFALTQDGQLLA  274 (432)
Q Consensus       201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~-~---~~~~~~i~~~~~sp~~~~l~  274 (432)
                      +.. +...+.+..    -.++.|+......++.+   ......+||+.+.. +.+ +   .+....-++..|+|+..+++
T Consensus      1174 ~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt---~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE----DKAVKFSNSLQFRALGT---EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             cccccCccccccc----cceeehhhhHHHHHhcc---cccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            764 555666543    23677776655445544   44678899999843 222 2   12233347889999988765


Q ss_pred             EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCC
Q 014007          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (432)
Q Consensus       275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  342 (432)
                         +||.   +||++..+.++.|...   ..-..-.|+|.|..++.-+     .|||+++.+.+...+
T Consensus      1247 ---ndGv---LWDvR~~~aIh~FD~f---t~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1247 ---NDGV---LWDVRIPEAIHRFDQF---TDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred             ---eCce---eeeeccHHHHhhhhhh---eecccccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence               4664   9999998888887642   1223447999999988876     499999998777655

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.39  E-value=0.00082  Score=55.76  Aligned_cols=127  Identities=10%  Similarity=0.007  Sum_probs=79.4

Q ss_pred             CCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007           97 HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (432)
Q Consensus        97 ~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~  175 (432)
                      ..+++.|+-.+ +.--|..++.......+.  .......+. -  +.+++-|...     |.+++.+.++|.....+.-.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-v--gdfVV~GCy~-----g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-V--GDFVVLGCYS-----GGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-E--CCEEEEEEcc-----CcEEEEEecchhheeeeeeh
Confidence            34666666433 666777777777665553  332222332 2  2335556666     99999999999888888744


Q ss_pred             CceEE-EEEecCccEEE--e-CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007          176 SEVRS-VKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       176 ~~v~~-~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      +.|.+ ....+++.++.  + |++.+..|.++..++...+........-++.+-...++++.
T Consensus        93 ~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~  154 (354)
T KOG4649|consen   93 ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI  154 (354)
T ss_pred             hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe
Confidence            44443 23455666555  3 89999999999888777655444334455666445555554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.39  E-value=3.9e-05  Score=71.34  Aligned_cols=220  Identities=11%  Similarity=0.083  Sum_probs=116.7

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe--CCeEEEEEcCCCe
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLK  205 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~  205 (432)
                      .......+.++|++.+++.++.      |...|+.....+..    ..+......|...+.+++.  +++|.|+.--+.+
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~------geY~iyt~~~~r~k----~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGD------GEYEIYTALAWRNK----AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEET------TEEEEEETTTTEEE----EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred             CCcCCeeEEECCCCCEEEEEcC------CEEEEEEccCCccc----ccCceeEEEEecCccEEEEECCCeEEEEEcCccc
Confidence            3344678899999988887554      78888873332221    2345567889998888885  5689996422223


Q ss_pred             eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (432)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v  285 (432)
                      ....++..   ...-.+.. |.- +.+.   .++.|.+||+.++.+..-.... .|..+.|+++|.+++..+.+.  +.|
T Consensus       101 ~~k~i~~~---~~~~~If~-G~L-L~~~---~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~--i~i  169 (443)
T PF04053_consen  101 VVKSIKLP---FSVEKIFG-GNL-LGVK---SSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDS--IYI  169 (443)
T ss_dssp             TT-----S---S-EEEEE--SSS-EEEE---ETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-S--EEE
T ss_pred             cceEEcCC---cccceEEc-CcE-EEEE---CCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCe--EEE
Confidence            22333322   11222222 443 3332   2457999999986544333333 389999999999999998775  777


Q ss_pred             EECCCC-----------ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007          286 FNTLDG-----------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (432)
Q Consensus       286 wd~~~~-----------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (432)
                      ++....           ..+..+..  ....|.+.+|..|  .++-.+.. .|+.  +-.++                  
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge------------------  224 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE------------------  224 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT--EEEEE-TT-EEEE--EETTE------------------
T ss_pred             EEecchhcccccccCchhceEEEEE--ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC------------------
Confidence            764322           02333331  1367889999766  34333333 6665  55554                  


Q ss_pred             CceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                        ...+..-+.++.-+...+..+.|.....|+.|..+.+++
T Consensus       225 ------------------~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  225 ------------------TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             ------------------EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             ------------------cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence                              223333345677888888888999999999999999876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.38  E-value=0.0002  Score=67.93  Aligned_cols=234  Identities=12%  Similarity=0.075  Sum_probs=137.3

Q ss_pred             CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEE-------------------EecCccEEE----eCC
Q 014007          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVK-------------------LRRDRIIVV----LEQ  194 (432)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~-------------------~~~~~~~~~----~d~  194 (432)
                      +|+++...+..    ...|...++...++.+.++  ....+.+++                   +.+||+.+.    ..+
T Consensus       140 dGr~~findk~----n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~  215 (635)
T PRK02888        140 DGRYLFINDKA----NTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRS  215 (635)
T ss_pred             ceeEEEEecCC----CcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeE
Confidence            56666655432    1566666666655444333  223333333                   334555443    145


Q ss_pred             eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC-CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEE
Q 014007          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL  273 (432)
Q Consensus       195 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l  273 (432)
                      .+.+.|..+.+...++.....+ ..+.++++++.+++.+..++. ..+...+.......... .-..+  -++.++|++.
T Consensus       216 ~vSvID~etmeV~~qV~Vdgnp-d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf-ni~~i--ea~vkdGK~~  291 (635)
T PRK02888        216 LFTAVDAETMEVAWQVMVDGNL-DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF-NIARI--EEAVKAGKFK  291 (635)
T ss_pred             EEEEEECccceEEEEEEeCCCc-ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE-chHHH--HHhhhCCCEE
Confidence            7888888887777777654433 568999999887765422222 22332222211100000 00001  1334578877


Q ss_pred             EEEcCCCceEEEEECCC-----CceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCC
Q 014007          274 ATSSTKGTLVRIFNTLD-----GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTS  347 (432)
Q Consensus       274 ~~~~~dg~~i~vwd~~~-----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~  347 (432)
                      ..+  ++. |.+.|.++     .+.+..+..   ......+.++|||+++++++ .+++|.|+|+.+.+..-..      
T Consensus       292 ~V~--gn~-V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~------  359 (635)
T PRK02888        292 TIG--GSK-VPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG------  359 (635)
T ss_pred             EEC--CCE-EEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc------
Confidence            663  566 99999988     466666663   36788999999999988776 6899999999987632100      


Q ss_pred             CCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          348 DPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                             .+.+          +.--.++.....+ -...+|.++|+...+.--|..|-.|+++.
T Consensus       360 -------~~~~----------~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        360 -------KIKP----------RDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             -------cCCc----------cceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence                   0000          0000122222222 34688999999888888899999999876

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.38  E-value=0.00018  Score=67.67  Aligned_cols=203  Identities=9%  Similarity=0.070  Sum_probs=121.3

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ......++..|.--+++..+++++.|++.| +.+|+...+.... .... +....+..+..+++..++|.|+..     |
T Consensus        26 ~~~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~-~~~~~~~~~~vs~~e~lvAagt~~-----g   98 (726)
T KOG3621|consen   26 LLQPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNE-GATGITCVRSVSSVEYLVAAGTAS-----G   98 (726)
T ss_pred             hhccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-cccc-CccceEEEEEecchhHhhhhhcCC-----c
Confidence            344566777888888888999999999777 9999977665442 2222 345555666777877788888777     9


Q ss_pred             eEEEEeCCCCce-----eEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCe----eeEEEeeccCCcceEEE
Q 014007          157 KVMIWDDHQSRC-----IGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLK----LLHQIETIANPKGLCAV  222 (432)
Q Consensus       157 ~v~iwd~~~~~~-----~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~  222 (432)
                      .|.++-+..+..     +....  |+..|++++|++++..+++   .|+|..-.+....    ..+.+-....  .++.+
T Consensus        99 ~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds--~IVQl  176 (726)
T KOG3621|consen   99 RVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS--EIVQL  176 (726)
T ss_pred             eEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCc--ceEEe
Confidence            999998776432     11122  6788999999999999985   5788877776511    1111211122  24555


Q ss_pred             ecCCCcEEEEeecCCCCcEEEEEccCCceeeeec--cCCc-eeEEEEcCC----CCEEEEEcCCCceEEEEECC-CCceE
Q 014007          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSR-IACFALTQD----GQLLATSSTKGTLVRIFNTL-DGTLL  294 (432)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~-i~~~~~sp~----~~~l~~~~~dg~~i~vwd~~-~~~~~  294 (432)
                      +.-...+++++    --...+++.+.+.++.+-.  .++. -...+|-|.    .+-.+.++.-|  .|+|... .|+.+
T Consensus       177 D~~q~~LLVSt----l~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~  250 (726)
T KOG3621|consen  177 DYLQSYLLVST----LTRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVI  250 (726)
T ss_pred             ecccceehHhh----hhhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEE
Confidence            55544444432    2334456665544433321  1221 123344442    33455666666  5888654 34443


Q ss_pred             E
Q 014007          295 Q  295 (432)
Q Consensus       295 ~  295 (432)
                      +
T Consensus       251 ~  251 (726)
T KOG3621|consen  251 K  251 (726)
T ss_pred             E
Confidence            3

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.36  E-value=0.00075  Score=59.67  Aligned_cols=207  Identities=13%  Similarity=0.069  Sum_probs=124.9

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEE-EEecCccEEEeCCeEEEEEcCCCeeeEEEeec-----cCCcceEEEecCCCcE
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSV-KLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-----ANPKGLCAVSQGVGSL  229 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  229 (432)
                      +.|.-|+..+++ ...+...+.+.++ .+...+.+++.+..+++++.+++..+..+...     ....+...+.|+|.. 
T Consensus        47 ~~i~r~~~~~g~-~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~-  124 (307)
T COG3386          47 GRIHRLDPETGK-KRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI-  124 (307)
T ss_pred             CeEEEecCCcCc-eEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE-
Confidence            788888876554 3344444444444 45566777778888999998766553333211     123346788888753 


Q ss_pred             EEEeec---------CCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC--Cc---eEE
Q 014007          230 VLVCPG---------LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--GT---LLQ  295 (432)
Q Consensus       230 ~~~~~g---------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~--~~---~~~  295 (432)
                      ++...+         ..-|.|+.+|......+.+..+-..-+.|+||||++.|+.+......|.-|++..  +.   ...
T Consensus       125 wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~  204 (307)
T COG3386         125 WFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG  204 (307)
T ss_pred             EEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce
Confidence            344333         1124444444433445555555666789999999988877766533277777652  21   111


Q ss_pred             EEEeCCCcCceEEEEECCCCCEEEEEeCCC-eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeE
Q 014007          296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKG-TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA  374 (432)
Q Consensus       296 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (432)
                      .+......+..-.++...+|.+.+++..+| .|.+|+.+ ++.                                   +.
T Consensus       205 ~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l-----------------------------------~~  248 (307)
T COG3386         205 FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL-----------------------------------LG  248 (307)
T ss_pred             EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE-----------------------------------EE
Confidence            122112345667788888888876554444 89999988 552                                   34


Q ss_pred             EEEecCCCceEEEEcc-CCCEEEEEec
Q 014007          375 QFRLVEGSPYIVAFGH-QKNTVVILGM  400 (432)
Q Consensus       375 ~~~~~~~~v~~~~~s~-~~~~l~~~~~  400 (432)
                      .++.+...+++++|-- +.+.|++.+.
T Consensus       249 ~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         249 EIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEECCCCCCccceEeCCCcCEEEEEec
Confidence            5666666788888854 5565554444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.36  E-value=7.2e-05  Score=69.12  Aligned_cols=116  Identities=13%  Similarity=0.126  Sum_probs=79.0

Q ss_pred             CceeEEEEcC-CCCEEEE----EcCCCc---eEEEEECCCCce--EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEE
Q 014007          259 SRIACFALTQ-DGQLLAT----SSTKGT---LVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH  328 (432)
Q Consensus       259 ~~i~~~~~sp-~~~~l~~----~~~dg~---~i~vwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  328 (432)
                      ....++.|+- +.+.+.+    .+.+|.   .-.+|++...+.  +..... ..+..+.+++++|+...|+.|+.||+|.
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSii  284 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSII  284 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEE
Confidence            3445666665 3333333    222332   135677655432  222222 2567899999999999999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          329 VFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      +||...+..                                     ......=..+.++|+|+|..+++|+..|.+.+||
T Consensus       285 LyD~~~~~t-------------------------------------~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  285 LYDTTRGVT-------------------------------------LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             EEEcCCCee-------------------------------------eeeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence            999987641                                     1111222367899999999999999999999999


Q ss_pred             ecCC
Q 014007          409 FDPV  412 (432)
Q Consensus       409 ~~~~  412 (432)
                      +...
T Consensus       328 ~ALs  331 (545)
T PF11768_consen  328 MALS  331 (545)
T ss_pred             eecC
Confidence            8663

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.34  E-value=0.0002  Score=65.64  Aligned_cols=176  Identities=12%  Similarity=0.100  Sum_probs=102.2

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeec-----------------cCC
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI-----------------ANP  216 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~-----------------~~~  216 (432)
                      +.+.+||+.+++..........+....|+|+|..++  .++.|++++..+++..+.-...                 -+.
T Consensus        23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~  102 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR  102 (353)
T ss_dssp             EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred             eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence            789999999876554444567889999999999988  3999999998777443321111                 112


Q ss_pred             cceEEEecCCCcEEEEeecCCCCc-----------------------------------EEEEEccCCceeeee------
Q 014007          217 KGLCAVSQGVGSLVLVCPGLQKGQ-----------------------------------VRVEHYASKRTKFIM------  255 (432)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~d~~-----------------------------------i~i~d~~~~~~~~~~------  255 (432)
                      -..+.|+||++.++++..  .+..                                   +.++|+.+++...+.      
T Consensus       103 ~~~~~WSpd~~~la~~~~--d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~  180 (353)
T PF00930_consen  103 RSAVWWSPDSKYLAFLRF--DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLN  180 (353)
T ss_dssp             SBSEEE-TTSSEEEEEEE--E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHH
T ss_pred             ccceEECCCCCEEEEEEE--CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccC
Confidence            346889999988765542  1222                                   223444443332221      


Q ss_pred             ccCCceeEEEEcCCCCEEEEE--cCCCc--eEEEEECCCCceEEEEEeCCCcCce---EEEEEC-CCCCE-EEEEeCCCe
Q 014007          256 AHDSRIACFALTQDGQLLATS--STKGT--LVRIFNTLDGTLLQEVRRGADRAEI---YSLAFS-SNAQW-LAVSSDKGT  326 (432)
Q Consensus       256 ~~~~~i~~~~~sp~~~~l~~~--~~dg~--~i~vwd~~~~~~~~~~~~~~~~~~i---~~~~~s-~~~~~-l~~~~~dg~  326 (432)
                      .-...+..+.|.++++.|+..  +.+..  .+.+.|..++++...+... ....|   ..+.|. +++.. |.....+|-
T Consensus       181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~  259 (353)
T PF00930_consen  181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGY  259 (353)
T ss_dssp             TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred             CCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCC
Confidence            234467889999999844433  33322  2677788887665444432 22322   345554 55554 444447776


Q ss_pred             EEEEEecC
Q 014007          327 VHVFNLKV  334 (432)
Q Consensus       327 i~iwd~~~  334 (432)
                      -+||-+..
T Consensus       260 ~hly~~~~  267 (353)
T PF00930_consen  260 RHLYLYDL  267 (353)
T ss_dssp             EEEEEEET
T ss_pred             cEEEEEcc
Confidence            55555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.34  E-value=0.0007  Score=57.74  Aligned_cols=196  Identities=9%  Similarity=0.087  Sum_probs=114.8

Q ss_pred             eecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEEe---CCe
Q 014007          122 RDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQK  195 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~  195 (432)
                      +.+. +-...+..++|+++ +..++..+..     +.|..++. +|+.++.+.  ..+..-+|++..++.+++.   ++.
T Consensus        15 ~~l~-g~~~e~SGLTy~pd~~tLfaV~d~~-----~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~   87 (248)
T PF06977_consen   15 KPLP-GILDELSGLTYNPDTGTLFAVQDEP-----GEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQR   87 (248)
T ss_dssp             EE-T-T--S-EEEEEEETTTTEEEEEETTT-----TEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTE
T ss_pred             eECC-CccCCccccEEcCCCCeEEEEECCC-----CEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCc
Confidence            4454 44456899999986 5566666666     89999995 588888887  3467899999999998885   578


Q ss_pred             EEEEEcCCCe------eeEEEe-----eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--C--ceee-------
Q 014007          196 IFVYNFADLK------LLHQIE-----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--K--RTKF-------  253 (432)
Q Consensus       196 i~i~d~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~--~~~~-------  253 (432)
                      +.++++....      ....+.     .....+..++|++.++.++++.   +..-..+|.++.  .  ....       
T Consensus        88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~  164 (248)
T PF06977_consen   88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLD  164 (248)
T ss_dssp             EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred             EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccc
Confidence            9998884321      112222     1223467899999999988775   455556666654  1  1111       


Q ss_pred             -eeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCceEEEEEeCC--C-----cCceEEEEECCCCCEEEEEeCC
Q 014007          254 -IMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--D-----RAEIYSLAFSSNAQWLAVSSDK  324 (432)
Q Consensus       254 -~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~--~-----~~~i~~~~~s~~~~~l~~~~~d  324 (432)
                       .......+.+++++|. |++++.+..... |..+| .+|+.+..+....  |     -...-.|+|.++|++. ..++-
T Consensus       165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEp  241 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEP  241 (248)
T ss_dssp             -HT--SS---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETT
T ss_pred             cccceeccccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCC
Confidence             1123446789999995 556666666776 99999 7888877666422  1     0247789999999655 45577


Q ss_pred             CeEEEE
Q 014007          325 GTVHVF  330 (432)
Q Consensus       325 g~i~iw  330 (432)
                      +..++|
T Consensus       242 Nlfy~f  247 (248)
T PF06977_consen  242 NLFYRF  247 (248)
T ss_dssp             TEEEEE
T ss_pred             ceEEEe
Confidence            777665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.34  E-value=0.0017  Score=57.07  Aligned_cols=262  Identities=16%  Similarity=0.162  Sum_probs=144.0

Q ss_pred             cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC-------CCeEEEEeCCCCceeEEeecCC---
Q 014007          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP-------LNKVMIWDDHQSRCIGELSFRS---  176 (432)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~-------~~~v~iwd~~~~~~~~~~~~~~---  176 (432)
                      .+.++|.+.++..  ..+.   ....-.+..++++..+.+...-  |+       .-.|.+||..+-....++.-+.   
T Consensus        18 rv~viD~d~~k~l--Gmi~---~g~~~~~~~spdgk~~y~a~T~--~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R   90 (342)
T PF06433_consen   18 RVYVIDADSGKLL--GMID---TGFLGNVALSPDGKTIYVAETF--YSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR   90 (342)
T ss_dssp             EEEEEETTTTEEE--EEEE---EESSEEEEE-TTSSEEEEEEEE--EEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred             eEEEEECCCCcEE--EEee---cccCCceeECCCCCEEEEEEEE--EeccccccceeEEEEEecCcCcccceEecCCcch
Confidence            4788887776644  3332   1222234456776666543210  11       0359999999998888776221   


Q ss_pred             -----ceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCC-CcEEEEeecCCCCcEEEEE
Q 014007          177 -----EVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEH  245 (432)
Q Consensus       177 -----~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~i~i~d  245 (432)
                           ....++++.|++++..     ...|.|.|+..++.+.++... +   |.-+-|.+ +.+...|   .||.+.-..
T Consensus        91 ~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC---~DGsl~~v~  163 (342)
T PF06433_consen   91 AQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLC---GDGSLLTVT  163 (342)
T ss_dssp             --BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEE---TTSCEEEEE
T ss_pred             heecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEe---cCCceEEEE
Confidence                 1234678889988874     568999999999988887642 2   33333443 3444444   589998888


Q ss_pred             ccC-Cceee-----eeccCCce-eEEEEcCCCCEEEEEcCCCceEEEEECCCCceE--EEEEeCC--------CcCceEE
Q 014007          246 YAS-KRTKF-----IMAHDSRI-ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL--QEVRRGA--------DRAEIYS  308 (432)
Q Consensus       246 ~~~-~~~~~-----~~~~~~~i-~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~--~~~~~~~--------~~~~i~~  308 (432)
                      ++. ++...     +.....++ ..-++...+..++--+.+|. |+--|+......  ..+....        .++.-.-
T Consensus       164 Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~-v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~  242 (342)
T PF06433_consen  164 LDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGN-VYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL  242 (342)
T ss_dssp             ETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSE-EEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-
T ss_pred             ECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCE-EEEEeccCCcccccCcccccCccccccCcCCcceee
Confidence            874 33221     11112222 23344445555666788888 888887665432  2222100        0123344


Q ss_pred             EEECCCCCEEEEEeC--------CC--eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe
Q 014007          309 LAFSSNAQWLAVSSD--------KG--TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL  378 (432)
Q Consensus       309 ~~~s~~~~~l~~~~~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (432)
                      +++++....|.+.-.        |+  .|.+||+.+++.                                   ++.+..
T Consensus       243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-----------------------------------v~Ri~l  287 (342)
T PF06433_consen  243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-----------------------------------VARIPL  287 (342)
T ss_dssp             EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-----------------------------------EEEEEE
T ss_pred             eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-----------------------------------EEEEeC
Confidence            667665544443221        11  356666666652                                   333332


Q ss_pred             cCCCceEEEEccCCC-EEEEE-ecCCeEEEEEecCCCCCcceEee
Q 014007          379 VEGSPYIVAFGHQKN-TVVIL-GMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       379 ~~~~v~~~~~s~~~~-~l~~~-~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                      . ..+.+++.+.|.+ +|++. ..+|.+.+|+  ..+|+.+..++
T Consensus       288 ~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D--~~tGk~~~~~~  329 (342)
T PF06433_consen  288 E-HPIDSIAVSQDDKPLLYALSAGDGTLDVYD--AATGKLVRSIE  329 (342)
T ss_dssp             E-EEESEEEEESSSS-EEEEEETTTTEEEEEE--TTT--EEEEE-
T ss_pred             C-CccceEEEccCCCcEEEEEcCCCCeEEEEe--CcCCcEEeehh
Confidence            1 2477899998766 56554 4589999966  46777776665

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=0.00017  Score=69.25  Aligned_cols=201  Identities=16%  Similarity=0.176  Sum_probs=128.7

Q ss_pred             CeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCC
Q 014007           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      .|+  +|++.+..++.|+ ++.|.+++-  .- .....++ .+...+....+.-+. .++++-+.|..-.+-.|++|+++
T Consensus        27 ~is--c~~s~~~~vvigt~~G~V~~Ln~--s~-~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   27 AIS--CCSSSTGSVVIGTADGRVVILNS--SF-QLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             cee--EEcCCCceEEEeeccccEEEecc--cc-eeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            554  4678888899998 444766652  21 2223343 344445555555444 66666655522222379999986


Q ss_pred             CC------cee---EEee-----cCCceEEEEEecCccEEE---eCCeEEEEEcC---C-CeeeEEEeeccCCcceEEEe
Q 014007          165 QS------RCI---GELS-----FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA---D-LKLLHQIETIANPKGLCAVS  223 (432)
Q Consensus       165 ~~------~~~---~~~~-----~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~---~-~~~~~~~~~~~~~~~~~~~~  223 (432)
                      .-      .++   +.+.     ...++.+++.+.+-..++   .+|.|..+.=.   + +...........+|+.+++.
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR  180 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence            43      233   2222     246788899999877766   38998888521   1 22222233456789999999


Q ss_pred             cCCCcEEEEeecCCCCcEEEEEccCCc--eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007          224 QGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (432)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~  298 (432)
                      .++...++++   .-..|.+|.+.++.  ...+..|...+.|..|++....+++++...  |.+||....+.-..|.
T Consensus       181 ~d~~s~lFv~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  181 SDGKSVLFVA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cCCceeEEEE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeec
Confidence            9998854554   34689999988755  455778889999999998665466666554  8999977655555555

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.32  E-value=0.00014  Score=71.39  Aligned_cols=132  Identities=14%  Similarity=0.245  Sum_probs=94.2

Q ss_pred             CCeEEEEEcCCCeeeEEEeeccCCcceEEEecC-------CCcEEEEeecCCCCcEEEEEccCCc--eeeee----ccCC
Q 014007          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG-------VGSLVLVCPGLQKGQVRVEHYASKR--TKFIM----AHDS  259 (432)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~----~~~~  259 (432)
                      .+.|+-.|++.|+.+..+..+... ....+.|+       +...+++.   .+..+..||.+-..  +....    ....
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGl---s~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGL---SDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEE---CCCceEEeccCCCCCceeeccccccccCC
Confidence            468999999999999999887653 25566664       23344443   67899999998732  21111    2345


Q ss_pred             ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      ...|++-+.+| +||+|+.+|. ||+|| +.|+.-++.-.+ ...+|..|..+.||++|++.+ +..|.+++..
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~-IRLyd-~~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGD-IRLYD-RLGKRAKTALPG-LGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCc-EEeec-ccchhhhhcCCC-CCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            67888888787 6899999999 99999 455433333222 347999999999999998776 5668888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.31  E-value=0.0014  Score=59.38  Aligned_cols=217  Identities=13%  Similarity=0.211  Sum_probs=123.6

Q ss_pred             cEEEEEcCCCeeEEEeecccCcceeEEEE---eeeC----CeEEEecCCC-C-CC--CCC-CeEEEEeCCCC-----c--
Q 014007          107 GFRIYNCDPFREIFRRDFERGGGIGVVEM---LFRC----NILALVGGGP-D-PQ--YPL-NKVMIWDDHQS-----R--  167 (432)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~---~~~~----~~~~~~s~~~-d-~~--~~~-~~v~iwd~~~~-----~--  167 (432)
                      .|+|.|-.+.+......+.  ....+.++   .+..    ...+++.|.. . +.  ... |.|.++++...     +  
T Consensus         3 ~i~l~d~~~~~~~~~~~l~--~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELE--PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEE--TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             EEEEEeCCCCeEEEEEECC--CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            3788887777766555665  33444433   3332    1344443321 1 11  112 89999999884     2  


Q ss_pred             eeEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007          168 CIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (432)
Q Consensus       168 ~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  247 (432)
                      .+......++|++++--.+..+++.++.|++|++...+.+........+.....+...++.+++   |+....+.++.++
T Consensus        81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~v---gD~~~sv~~~~~~  157 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILV---GDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEE---EESSSSEEEEEEE
T ss_pred             EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEE---EEcccCEEEEEEE
Confidence            2233347899999987744433336999999999887723333333444456667666665443   3356777777554


Q ss_pred             C--Cceeeee--ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC-------Cc-eEE-EEEeCCCcCceEEE---EE
Q 014007          248 S--KRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-------GT-LLQ-EVRRGADRAEIYSL---AF  311 (432)
Q Consensus       248 ~--~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~-------~~-~~~-~~~~~~~~~~i~~~---~~  311 (432)
                      .  ..+..+.  .....++++.|-++++.++.+..+|. |.++....       +. .+. ...-+ ....|+++   ++
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l  235 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSL  235 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--S
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEe
Confidence            4  3333332  23556889989877778999999999 99987752       22 222 22222 33567777   55


Q ss_pred             CCC--CC------EEEEEeCCCeEEEE
Q 014007          312 SSN--AQ------WLAVSSDKGTVHVF  330 (432)
Q Consensus       312 s~~--~~------~l~~~~~dg~i~iw  330 (432)
                      .|.  +.      .++.++.+|.|.+.
T Consensus       236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  236 IPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eecCCCCcccccceEEEEecCCEEEEE
Confidence            552  22      47778889988844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.30  E-value=2e-05  Score=75.83  Aligned_cols=175  Identities=17%  Similarity=0.280  Sum_probs=123.0

Q ss_pred             EEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCC
Q 014007           99 CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRS  176 (432)
Q Consensus        99 ~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~  176 (432)
                      .++.|+ .+.+..+|+.+.+......+.   ...+.-|.  .++..+.+|...     |+|.+-|..+.+.+.++. |.+
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~---a~~v~imR--~Nnr~lf~G~t~-----G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVS---ASGVTIMR--YNNRNLFCGDTR-----GTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeecc---CCceEEEE--ecCcEEEeeccc-----ceEEeecCCcCceeeeeecccc
Confidence            344444 444677787766655333332   22233333  456777788877     999999999999999999 999


Q ss_pred             ceEEEEEecCccEEE----------eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEE-
Q 014007          177 EVRSVKLRRDRIIVV----------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH-  245 (432)
Q Consensus       177 ~v~~~~~~~~~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d-  245 (432)
                      .|.++....+-...+          .|.-|+|||++..+.+.-+..+.++ ..+.|.|.-...++++  +..|...+.| 
T Consensus       219 siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~--S~sGq~q~vd~  295 (1118)
T KOG1275|consen  219 SISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVT--SQSGQFQFVDT  295 (1118)
T ss_pred             ceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEE--ecccceeeccc
Confidence            998776644322211          3778999999998877777665555 4678888766555554  2568889888 


Q ss_pred             --ccCCce--eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007          246 --YASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       246 --~~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd  287 (432)
                        +.+...  ..+......+..+.++++|+.|+.|..+|. |.+|-
T Consensus       296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa  340 (1118)
T KOG1275|consen  296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA  340 (1118)
T ss_pred             cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence              433323  334445566999999999999999999999 99996

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=7.3e-05  Score=65.46  Aligned_cols=243  Identities=10%  Similarity=0.082  Sum_probs=130.0

Q ss_pred             cccCCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYP  154 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~  154 (432)
                      .+.+..|...|..++|||..+ +|..++ ++.|+|.|+++....  ..+.  -...+++++|+-+ ..++.+|..+    
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--ssy~--a~~~~wSC~wDlde~h~IYaGl~n----  257 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--SSYI--AYNQIWSCCWDLDERHVIYAGLQN----  257 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee--ehee--ccCCceeeeeccCCcceeEEeccC----
Confidence            457788899999999999887 666666 667999999887665  3333  3378899999765 4566777777    


Q ss_pred             CCeEEEEeCCCCc-eeEEee---cCCceEEEEEe------cCccEEE-eCCeEEEEEcCC--CeeeEEEeec-cCCcceE
Q 014007          155 LNKVMIWDDHQSR-CIGELS---FRSEVRSVKLR------RDRIIVV-LEQKIFVYNFAD--LKLLHQIETI-ANPKGLC  220 (432)
Q Consensus       155 ~~~v~iwd~~~~~-~~~~~~---~~~~v~~~~~~------~~~~~~~-~d~~i~i~d~~~--~~~~~~~~~~-~~~~~~~  220 (432)
                       |.|.+||++..+ .+..+.   ...+|..++.-      +.+-+++ .--.+..|++.-  +.....++.. .+....+
T Consensus       258 -G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cism  336 (463)
T KOG1645|consen  258 -GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISM  336 (463)
T ss_pred             -ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeee
Confidence             999999987653 222222   23344443322      2222332 333344555432  1111112111 1222223


Q ss_pred             EEecCCCcEEEEeecCC-C---CcE--EEEEccCCcee-eeecc-CCc------eeEEEEcCCCCEEEE-EcCCCceEEE
Q 014007          221 AVSQGVGSLVLVCPGLQ-K---GQV--RVEHYASKRTK-FIMAH-DSR------IACFALTQDGQLLAT-SSTKGTLVRI  285 (432)
Q Consensus       221 ~~~~~~~~~~~~~~g~~-d---~~i--~i~d~~~~~~~-~~~~~-~~~------i~~~~~sp~~~~l~~-~~~dg~~i~v  285 (432)
                      ...+..+++++.+-... -   ..+  ++-+.+...+. .-..+ ...      -..+.-.++.++++. +...+. +.+
T Consensus       337 qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~-lil  415 (463)
T KOG1645|consen  337 QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE-LIL  415 (463)
T ss_pred             eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce-eEE
Confidence            33333344443321100 0   000  00011111110 00111 000      011222345555554 444455 999


Q ss_pred             EECCCCceEEEEEeCCCcCceEEEEECC-C-CCEEEEEeCCCeEEEEEecC
Q 014007          286 FNTLDGTLLQEVRRGADRAEIYSLAFSS-N-AQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~-~-~~~l~~~~~dg~i~iwd~~~  334 (432)
                      ||..+++.++++.   ...+|.+++... + +.+|+.-. |..++||..+.
T Consensus       416 ~D~~s~evvQ~l~---~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  416 QDPHSFEVVQTLA---LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             eccchhheeeecc---cCcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence            9999999999998   447888887654 2 34666554 66789987543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.0022  Score=59.34  Aligned_cols=240  Identities=14%  Similarity=0.109  Sum_probs=159.7

Q ss_pred             CeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeC
Q 014007           87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      ....+.+.+++..+.+..  .+.+...+..  ......... .....-..++.++.+. ..+....+     +.|.+.|.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~-~g~~~p~~i~v~~~~~~vyv~~~~~-----~~v~vid~  103 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNTVTQSLS-VGGVYPAGVAVNPAGNKVYVTTGDS-----NTVSVIDT  103 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc--cceeeeecc-CCCccccceeeCCCCCeEEEecCCC-----CeEEEEcC
Confidence            455678888886555444  2223333332  111111111 1112233445555444 55555445     89999998


Q ss_pred             CCCceeEEeecCCceEEEEEecCccEEE---e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCC
Q 014007          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (432)
Q Consensus       164 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (432)
                      .+.+.............+++++++..+.   .   ++++.+.|..+++.+........+ ..++++|+|+.++++.  ..
T Consensus       104 ~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~--~~  180 (381)
T COG3391         104 ATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN--SD  180 (381)
T ss_pred             cccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe--cC
Confidence            8888877777555788999999987666   2   478999998888888886555445 6899999999887765  46


Q ss_pred             CCcEEEEEccCCceee-----eeccCCceeEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007          238 KGQVRVEHYASKRTKF-----IMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (432)
Q Consensus       238 d~~i~i~d~~~~~~~~-----~~~~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~  309 (432)
                      ++.|.++|.....+..     ...-......+.++|+|.++......   +. +...|..++.....-...... ....+
T Consensus       181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~~~~~~-~~~~v  258 (381)
T COG3391         181 DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDLPVGSG-APRGV  258 (381)
T ss_pred             CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEeccccccC-CCCce
Confidence            8999999977765553     12223345678899999976665544   47 999999888777652221111 46778


Q ss_pred             EECCCCCEEEEEe-CCCeEEEEEecCCCCCC
Q 014007          310 AFSSNAQWLAVSS-DKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       310 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~  339 (432)
                      .++|+|..+.+.. ..+.+.+-|..+....+
T Consensus       259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~  289 (381)
T COG3391         259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVK  289 (381)
T ss_pred             eECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence            9999999988874 45889999988876444

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.19  E-value=0.00039  Score=63.72  Aligned_cols=139  Identities=9%  Similarity=0.074  Sum_probs=83.0

Q ss_pred             CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeecc---------------
Q 014007          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH---------------  257 (432)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---------------  257 (432)
                      .+.+.+||+.+++....... ........|+|+|+.++++.    ++.|.+++..++....+...               
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~----~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye   96 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR----DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE   96 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE----TTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe----cCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence            46799999998765443332 56677899999999877663    68899998876544333211               


Q ss_pred             ---CCceeEEEEcCCCCEEEEEcCCCc-----------------------------------eEEEEECCCCceEE-EEE
Q 014007          258 ---DSRIACFALTQDGQLLATSSTKGT-----------------------------------LVRIFNTLDGTLLQ-EVR  298 (432)
Q Consensus       258 ---~~~i~~~~~sp~~~~l~~~~~dg~-----------------------------------~i~vwd~~~~~~~~-~~~  298 (432)
                         -+.-..+-|||||++|+....|..                                   .+.|+|+.+++... ...
T Consensus        97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~  176 (353)
T PF00930_consen   97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP  176 (353)
T ss_dssp             HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---
T ss_pred             ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec
Confidence               112357889999999987654432                                   14556665555431 111


Q ss_pred             e--CCCcCceEEEEECCCCCEEEEEe--CC---CeEEEEEecCCC
Q 014007          299 R--GADRAEIYSLAFSSNAQWLAVSS--DK---GTVHVFNLKVNS  336 (432)
Q Consensus       299 ~--~~~~~~i~~~~~s~~~~~l~~~~--~d---g~i~iwd~~~~~  336 (432)
                      .  ......+..+.|.++++.|+..-  .+   ..+.++|..+++
T Consensus       177 ~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~  221 (353)
T PF00930_consen  177 NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE  221 (353)
T ss_dssp             HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred             cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc
Confidence            0  11234678889999888444332  22   245666776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.18  E-value=0.0014  Score=58.00  Aligned_cols=211  Identities=15%  Similarity=0.079  Sum_probs=129.9

Q ss_pred             EEcCCCCEEEEEc-CCc-EEEEEcCCCeeEEEeecccCcceeEEEEe-eeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007           92 SFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEML-FRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (432)
Q Consensus        92 ~~s~~~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~  168 (432)
                      .|.++...|.-.. -++ |.-|+..+++..   .+.  ....+.... ....+.++++.        ..+.+++.+++..
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---~~~--~p~~~~~~~~~d~~g~Lv~~~--------~g~~~~~~~~~~~   97 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR---VFP--SPGGFSSGALIDAGGRLIACE--------HGVRLLDPDTGGK   97 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE---EEE--CCCCcccceeecCCCeEEEEc--------cccEEEeccCCce
Confidence            6778887666665 333 888877655432   222  223334433 34444444443        4677888766655


Q ss_pred             eEEee------cCCceEEEEEecCccEEEeC--------------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          169 IGELS------FRSEVRSVKLRRDRIIVVLE--------------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       169 ~~~~~------~~~~v~~~~~~~~~~~~~~d--------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      +..+.      .....+.+...|+|.+.+.+              |.|+.+|. .+...+.+..+-..-+.++|+||++.
T Consensus        98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t  176 (307)
T COG3386          98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT  176 (307)
T ss_pred             eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence            33332      12456778888998887742              22444553 45555555443344467999999998


Q ss_pred             EEEEeecCCCCcEEEEEccC------Cc--eeeeeccCCceeEEEEcCCCCEEEEEcCCC-ceEEEEECCCCceEEEEEe
Q 014007          229 LVLVCPGLQKGQVRVEHYAS------KR--TKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRR  299 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~------~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~~i~vwd~~~~~~~~~~~~  299 (432)
                      ++++=  +..+.|..|++..      +.  ...+....+..-.++...+|.+.+++..+| . |.+|+.. ++++..+..
T Consensus       177 ly~aD--T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         177 LYVAD--TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             EEEEe--CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEEC
Confidence            87753  4568888888762      11  112223456677788888998876555554 6 9999976 999999985


Q ss_pred             CCCcCceEEEEEC-CCCCEEEEEe
Q 014007          300 GADRAEIYSLAFS-SNAQWLAVSS  322 (432)
Q Consensus       300 ~~~~~~i~~~~~s-~~~~~l~~~~  322 (432)
                      ..  ..+++++|- ++.+.|.+.+
T Consensus       253 P~--~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         253 PV--KRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CC--CCCccceEeCCCcCEEEEEe
Confidence            42  678888884 3445554444

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=7.7e-05  Score=65.32  Aligned_cols=89  Identities=18%  Similarity=0.164  Sum_probs=70.0

Q ss_pred             EEEEeCCCCceeEEee-cCCceEEEEEecCcc--EEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI--IVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~--~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      |++.+..+.+....+. +...|.+++|+|...  +..  .+.+|+|.|+++...+..+..+ ..+.+++|.-+..+.+  
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I--  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI--  251 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee--
Confidence            6666666666555444 778899999999765  222  3899999999998888888766 7889999999987654  


Q ss_pred             eecCCCCcEEEEEccCC
Q 014007          233 CPGLQKGQVRVEHYASK  249 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~  249 (432)
                      ++|..+|.|.+||++..
T Consensus       252 YaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             EEeccCceEEEEEccCC
Confidence            35789999999999873

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=0.0019  Score=59.80  Aligned_cols=218  Identities=13%  Similarity=0.077  Sum_probs=145.8

Q ss_pred             CCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC---CCCCCCCCeEEE
Q 014007           86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG---PDPQYPLNKVMI  160 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~---~d~~~~~~~v~i  160 (432)
                      ..-..+++++.+..+.+..  ++.|.+.|..+.+.......  +.  .-..+.+++++..+..+.   .+     +.+.+
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~--~P~~~~~~~~~~~vYV~n~~~~~-----~~vsv  144 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GL--GPVGLAVDPDGKYVYVANAGNGN-----NTVSV  144 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--cc--CCceEEECCCCCEEEEEecccCC-----ceEEE
Confidence            3345678899888554444  56699999766555422222  22  556677777764433332   25     89999


Q ss_pred             EeCCCCceeEEeecCCceEEEEEecCccEEEe----CCeEEEEEcCCCeeeE-----EEeeccCCcceEEEecCCCcEEE
Q 014007          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLH-----QIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       161 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      .|..+++.+........-..++++|+|..+..    ++.|.++|.......+     .+.... .-..+.+++++...++
T Consensus       145 id~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV  223 (381)
T COG3391         145 IDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYV  223 (381)
T ss_pred             EeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCCEEEE
Confidence            99999988888653322389999999986662    7899999976655443     122222 2246899999999988


Q ss_pred             EeecCCCCcEEEEEccCCceeeeec-cCC-ceeEEEEcCCCCEEEEEcCC-CceEEEEECCCCceEEEEEeCCCc-CceE
Q 014007          232 VCPGLQKGQVRVEHYASKRTKFIMA-HDS-RIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQEVRRGADR-AEIY  307 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~~~~~~-~~~-~i~~~~~sp~~~~l~~~~~d-g~~i~vwd~~~~~~~~~~~~~~~~-~~i~  307 (432)
                      +..++.++.+...|...+....... -.. ....+.++|+|+++.+.... +. +.+-|..+.+....+..+... ..+.
T Consensus       224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~~~~~~~  302 (381)
T COG3391         224 ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNEALGEPV  302 (381)
T ss_pred             EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeecccccccccce
Confidence            8755445789999988866654421 111 46678999999998887554 66 999999888887776643221 2355


Q ss_pred             EEEECCC
Q 014007          308 SLAFSSN  314 (432)
Q Consensus       308 ~~~~s~~  314 (432)
                      .+++.+.
T Consensus       303 ~~~~~~~  309 (381)
T COG3391         303 SIAISPL  309 (381)
T ss_pred             eccceee
Confidence            6666553

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.09  E-value=2.2e-05  Score=73.51  Aligned_cols=124  Identities=15%  Similarity=0.209  Sum_probs=90.9

Q ss_pred             cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       257 ~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +...|.--+++..+++++.|+..|. +++|+-..++. ..++.....+.+..+..|++..++|.|+..|.|.++-+....
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGS-VYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccce-EEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            3444555556678899999999999 99999655544 344432233567778899999999999999999999988733


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      ... .                       .|+..     .-+.|...|++++|++++..|++|...|+|..-.++.
T Consensus       110 p~~-~-----------------------~~~t~-----~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 PRD-L-----------------------DYVTP-----CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCc-c-----------------------eeecc-----ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            111 0                       00000     0122677899999999999999999999999988877

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.09  E-value=0.012  Score=56.89  Aligned_cols=189  Identities=15%  Similarity=0.217  Sum_probs=103.5

Q ss_pred             CCEEEEEcCCcEEEEEcCCCeeEEEeecccCcc-eeE-------EEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007           97 HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG-IGV-------VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (432)
Q Consensus        97 ~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~-~~v-------~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~  168 (432)
                      +.+++++.++.|.-+|..+++............ ...       ..+++..+..+ + +..+     +.|.-.|..+|+.
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~-v-~t~d-----g~l~ALDa~TGk~  142 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVF-F-GTLD-----ARLVALDAKTGKV  142 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEE-E-EcCC-----CEEEEEECCCCCE
Confidence            333333334557777777777665544321000 000       11223333333 3 3344     8999999999999


Q ss_pred             eEEeecCC-----ceEEEEEecCccEEE-e-------CCeEEEEEcCCCeeeEEEeeccCC-------------------
Q 014007          169 IGELSFRS-----EVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANP-------------------  216 (432)
Q Consensus       169 ~~~~~~~~-----~v~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~-------------------  216 (432)
                      +.......     .+.+--.--++.+++ .       +|.|..+|.++|+.+-.+......                   
T Consensus       143 ~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t  222 (527)
T TIGR03075       143 VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT  222 (527)
T ss_pred             EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence            88765211     122111112444444 2       578999999999887665332111                   


Q ss_pred             ------------c-ceEEEecCCCcEEEEeecC---CC-----------CcEEEEEccCCceee-ee--ccCC-------
Q 014007          217 ------------K-GLCAVSQGVGSLVLVCPGL---QK-----------GQVRVEHYASKRTKF-IM--AHDS-------  259 (432)
Q Consensus       217 ------------~-~~~~~~~~~~~~~~~~~g~---~d-----------~~i~i~d~~~~~~~~-~~--~~~~-------  259 (432)
                                  + ...++.+..+.+++.+ |.   .+           ..|.-.|+++++++- ++  .|+.       
T Consensus       223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~t-Gnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~  301 (527)
T TIGR03075       223 WPGDAWKTGGGATWGTGSYDPETNLIYFGT-GNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVN  301 (527)
T ss_pred             CCCCccccCCCCccCceeEcCCCCeEEEeC-CCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCC
Confidence                        0 1235566666666654 22   01           256667777766542 22  2221       


Q ss_pred             ceeEEEEcCCCC---EEEEEcCCCceEEEEECCCCceE
Q 014007          260 RIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLL  294 (432)
Q Consensus       260 ~i~~~~~sp~~~---~l~~~~~dg~~i~vwd~~~~~~~  294 (432)
                      ...-+.+..+|+   .++.+..+|. +++.|.++|+.+
T Consensus       302 ~p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i  338 (527)
T TIGR03075       302 EMILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL  338 (527)
T ss_pred             CcEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence            111222234665   7889999999 999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.07  E-value=0.0072  Score=58.03  Aligned_cols=231  Identities=12%  Similarity=0.096  Sum_probs=126.4

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcc---eeEE-EEeeeCCeEEEecCCCCCCC----CCCeEEEEeCCCCce
Q 014007           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGG---IGVV-EMLFRCNILALVGGGPDPQY----PLNKVMIWDDHQSRC  168 (432)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~~~s~~~d~~~----~~~~v~iwd~~~~~~  168 (432)
                      ..++.++ ++.|.-+|.++++........ .+.   ..+. ...... +.+++.... ..+    .++.|..+|..+|+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v~~-~~v~vg~~~-~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTIVK-KLVIIGSSG-AEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCC-CCcCcceEecCCCEEEC-CEEEEeccc-cccccCCCCcEEEEEECCCCce
Confidence            3455555 555888999888887665553 110   0011 112222 334333211 000    128899999999998


Q ss_pred             eEEeecC-Cc--------------------e-EEEEEecC-ccEEE-e-CC------------------eEEEEEcCCCe
Q 014007          169 IGELSFR-SE--------------------V-RSVKLRRD-RIIVV-L-EQ------------------KIFVYNFADLK  205 (432)
Q Consensus       169 ~~~~~~~-~~--------------------v-~~~~~~~~-~~~~~-~-d~------------------~i~i~d~~~~~  205 (432)
                      +..+... ..                    + ...++.+. +.+++ + ++                  .|.-+|..+|+
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            8887621 10                    1 12334432 33433 2 33                  69999999999


Q ss_pred             eeEEEeeccCCc------ceEEEe----cCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEE
Q 014007          206 LLHQIETIANPK------GLCAVS----QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT  275 (432)
Q Consensus       206 ~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~  275 (432)
                      .+..++......      ....+.    -++....++..+..+|.+..+|.++++..--....  ...++.+|  ..++.
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv  343 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYL  343 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEE
Confidence            887765322111      011111    23332222333557899999999887654322111  11233344  22333


Q ss_pred             E------------------cCCCceEEEEECCCCceEEEEEeCCCc------Cce--EEEEECCCCCEEEEEeCCCeEEE
Q 014007          276 S------------------STKGTLVRIFNTLDGTLLQEVRRGADR------AEI--YSLAFSSNAQWLAVSSDKGTVHV  329 (432)
Q Consensus       276 ~------------------~~dg~~i~vwd~~~~~~~~~~~~~~~~------~~i--~~~~~s~~~~~l~~~~~dg~i~i  329 (432)
                      +                  ..+|. |.-.|+.+|+.+-+.....+.      ...  ..+..  .+..|+.++.||.|+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~a  420 (488)
T cd00216         344 GAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRA  420 (488)
T ss_pred             ccccccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEE
Confidence            2                  23567 888899999888777643111      111  11222  4578888899999999


Q ss_pred             EEecCCCCC
Q 014007          330 FNLKVNSGS  338 (432)
Q Consensus       330 wd~~~~~~~  338 (432)
                      +|.++++.+
T Consensus       421 ld~~tG~~l  429 (488)
T cd00216         421 FDATTGKEL  429 (488)
T ss_pred             EECCCCcee
Confidence            999999843

The alignment model contains an 8-bladed beta-propeller.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.04  E-value=0.012  Score=54.99  Aligned_cols=168  Identities=13%  Similarity=0.168  Sum_probs=90.7

Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEe--eccCCcceE---EEecCCCc
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIE--TIANPKGLC---AVSQGVGS  228 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~  228 (432)
                      .|++|+ ..|+.+..+. ..+.+.++.|+.+..+++  .||.+++||+. |+....+.  .....+...   .....+.+
T Consensus        62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence            599998 5677888877 458999999999877777  39999999986 33311111  011111111   11112234


Q ss_pred             EEEEeecCCCCcEEEEEccCCc--eeeeeccCC---------cee-EEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007          229 LVLVCPGLQKGQVRVEHYASKR--TKFIMAHDS---------RIA-CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~---------~i~-~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~  296 (432)
                      +++.+   .++.+.+..--...  .+.+..-..         ... ...++.+....+....++. +.+.+-...+.   
T Consensus       140 ivvLt---~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~---  212 (410)
T PF04841_consen  140 IVVLT---GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ---  212 (410)
T ss_pred             EEEEC---CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc---
Confidence            44443   34444443322211  111110000         000 0223334444444444444 44333222111   


Q ss_pred             EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +.   ..+++..|+.||+|++||.-..+|.+.|.+..-.+
T Consensus       213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~  249 (410)
T PF04841_consen  213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE  249 (410)
T ss_pred             cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence            21   23689999999999999999999999888765443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.0027  Score=61.50  Aligned_cols=187  Identities=18%  Similarity=0.250  Sum_probs=116.3

Q ss_pred             eeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCc-eEEEEEecCccEEEe---C-C----eEEEEEcCCC-
Q 014007          136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE-VRSVKLRRDRIIVVL---E-Q----KIFVYNFADL-  204 (432)
Q Consensus       136 ~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~-v~~~~~~~~~~~~~~---d-~----~i~i~d~~~~-  204 (432)
                      ++++++..++-|..+     |.|.+++ ..-+.++.++ +... |..+....+..++++   | +    .|+||+++.- 
T Consensus        30 c~~s~~~~vvigt~~-----G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTAD-----GRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             EEcCCCceEEEeecc-----ccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            356666777777777     8888887 4445556666 5555 554544445455553   2 2    6999998752 


Q ss_pred             -----eee--EEEee-----ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-----CceeeeeccCCceeEEEEc
Q 014007          205 -----KLL--HQIET-----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----KRTKFIMAHDSRIACFALT  267 (432)
Q Consensus       205 -----~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-----~~~~~~~~~~~~i~~~~~s  267 (432)
                           .++  +.+..     ...++.+++++.+-..  ++ .|-.+|.|..+.-+-     .+......-..+|+.+++.
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~--Iv-~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT--IV-CGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR  180 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccE--EE-EEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence                 223  12222     2345677888888443  33 366889998885432     1222233456789999999


Q ss_pred             CCCCE-EEEEcCCCceEEEEECCCCce-EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          268 QDGQL-LATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       268 p~~~~-l~~~~~dg~~i~vwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      .++.. ++++.. .. |.+|.+....+ ...+..  |...+.|..|++....+++++ +..|.+|+....+
T Consensus       181 ~d~~s~lFv~Tt-~~-V~~y~l~gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  181 SDGKSVLFVATT-EQ-VMLYSLSGRTPSLKVLDN--NGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             cCCceeEEEEec-ce-eEEEEecCCCcceeeecc--CCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence            98887 333333 34 89999874442 333442  557889999987666465554 4469999987544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.98  E-value=0.0039  Score=55.01  Aligned_cols=194  Identities=14%  Similarity=0.191  Sum_probs=119.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEe-------------ecccCcceeEEEEe---eeCCeEEEecCCCC
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-------------DFERGGGIGVVEML---FRCNILALVGGGPD  150 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~-------------~~~~~~~~~v~~~~---~~~~~~~~~s~~~d  150 (432)
                      .|..+...++-+.|++-+|+.+.+++++........             .+.  ....+..++   -......++.+.. 
T Consensus        37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~f~~~~~~~~~~~L~va~k-  113 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLP--ETKGVSFFAVNGGHEGSRRLCVAVK-  113 (275)
T ss_pred             eEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccccccccccc--ccCCeeEEeeccccccceEEEEEEC-
Confidence            399999999888888777888999998755443211             111  223333333   2233344444443 


Q ss_pred             CCCCCCeEEEEeCCCC-----ceeEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeecc-----------
Q 014007          151 PQYPLNKVMIWDDHQS-----RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA-----------  214 (432)
Q Consensus       151 ~~~~~~~v~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------  214 (432)
                           .+|.+|.+...     +..+++.....+..++|..+...++..+...+.|+.++.....+....           
T Consensus       114 -----k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~  188 (275)
T PF00780_consen  114 -----KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSS  188 (275)
T ss_pred             -----CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccC
Confidence                 68888877653     456677788999999999777777778889999998766543332111           


Q ss_pred             -CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC
Q 014007          215 -NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (432)
Q Consensus       215 -~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~  291 (432)
                       .++..+.+. + +. ++.+   .+..-.+.|..+...+  .+.- ...+.++++  ...||+..+. +. |.||++.++
T Consensus       189 ~~~~~~~~~~-~-~e-~Ll~---~~~~g~fv~~~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~-~~-iEV~~~~~~  257 (275)
T PF00780_consen  189 SKPLGIFQLS-D-NE-FLLC---YDNIGVFVNKNGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFSS-NS-IEVRSLETG  257 (275)
T ss_pred             CCceEEEEeC-C-ce-EEEE---ecceEEEEcCCCCcCcccEEEc-CCchhEEEE--ECCEEEEECC-CE-EEEEECcCC
Confidence             122222222 1 23 3443   3444455566554333  2222 335556666  3347766665 45 999999999


Q ss_pred             ceEEEEEe
Q 014007          292 TLLQEVRR  299 (432)
Q Consensus       292 ~~~~~~~~  299 (432)
                      ++++.+..
T Consensus       258 ~lvQ~i~~  265 (275)
T PF00780_consen  258 ELVQTIPL  265 (275)
T ss_pred             cEEEEEEC
Confidence            99999884

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.92  E-value=0.0011  Score=64.30  Aligned_cols=109  Identities=14%  Similarity=0.081  Sum_probs=66.5

Q ss_pred             CcceEEEecCCCcEEEEee-----cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEE----
Q 014007          216 PKGLCAVSQGVGSLVLVCP-----GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF----  286 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~-----g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vw----  286 (432)
                      .+...+++|+|+.++++..     ......|.+++..... ..+.. ....+.-.|+|+|+.|++.......+++.    
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            4567899999998766542     1123356665654333 33322 22478899999998887775432213333    


Q ss_pred             -------ECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEe
Q 014007          287 -------NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (432)
Q Consensus       287 -------d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  332 (432)
                             ++..++...  .   ....|..+.|||||..++... +|.|++=-+
T Consensus       429 ~gql~~~~vd~ge~~~--~---~~g~Issl~wSpDG~RiA~i~-~g~v~Va~V  475 (591)
T PRK13616        429 TGQLARTPVDASAVAS--R---VPGPISELQLSRDGVRAAMII-GGKVYLAVV  475 (591)
T ss_pred             CceEEEEeccCchhhh--c---cCCCcCeEEECCCCCEEEEEE-CCEEEEEEE
Confidence                   333322221  1   235799999999999998776 577777433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.91  E-value=0.0083  Score=52.94  Aligned_cols=216  Identities=16%  Similarity=0.215  Sum_probs=122.5

Q ss_pred             CCCCEEEEEcCCcEEEEEc-CCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE---
Q 014007           95 QDHGCFAAGTDHGFRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG---  170 (432)
Q Consensus        95 ~~~~~l~~~~~~~i~iw~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~---  170 (432)
                      ..++.|+.|+++|+.+++. ...+..  ...   +...|..+...++...++.-. |     +.++++++..-....   
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~--~i~---~~~~I~ql~vl~~~~~llvLs-d-----~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKPT--RIL---KLSSITQLSVLPELNLLLVLS-D-----GQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCccce--eEe---ecceEEEEEEecccCEEEEEc-C-----CccEEEEchhhccccccc
Confidence            3577899999889999998 322222  222   333488888777544444333 2     799999987654333   


Q ss_pred             ------------EeecCCceEEEE---EecCccEEE--eCCeEEEEEcCCC-----eeeEEEeeccCCcceEEEecCCCc
Q 014007          171 ------------ELSFRSEVRSVK---LRRDRIIVV--LEQKIFVYNFADL-----KLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       171 ------------~~~~~~~v~~~~---~~~~~~~~~--~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                                  .+.....+...+   -......++  ...+|.+|.....     +..+++... ..+..++|.  ++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~  150 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNK  150 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCE
Confidence                        122233444444   112233333  4778888887653     455555443 455567777  444


Q ss_pred             EEEEeecCCCCcEEEEEccCCceeeeecc-------------CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEE
Q 014007          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAH-------------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------------~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~  295 (432)
                      +.+++    .....+.|+.++....+...             ..++..+.. +++.+|++-  |.. -.+.| ..|+..+
T Consensus       151 i~v~~----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~-g~fv~-~~G~~~r  221 (275)
T PF00780_consen  151 ICVGT----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNI-GVFVN-KNGEPSR  221 (275)
T ss_pred             EEEEe----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cce-EEEEc-CCCCcCc
Confidence            54432    46688899987655544321             123334444 345666543  222 23334 4554443


Q ss_pred             --EEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          296 --EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       296 --~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                        .+.-   ...+.++++.  ..||+.... +.|.||++.+++.++
T Consensus       222 ~~~i~W---~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  222 KSTIQW---SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQ  261 (275)
T ss_pred             ccEEEc---CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence              3432   2455667763  357777665 559999999998543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.90  E-value=0.022  Score=53.65  Aligned_cols=195  Identities=10%  Similarity=0.119  Sum_probs=109.5

Q ss_pred             eEEEEeeeCCeEEEec-----CCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---C---------
Q 014007          131 GVVEMLFRCNILALVG-----GGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---E---------  193 (432)
Q Consensus       131 ~v~~~~~~~~~~~~~s-----~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d---------  193 (432)
                      .+..+.++|++..++-     |+..     ..++++|+.+|+.+...-.......+.|.+++..++.   +         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~-----~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEW-----YTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSE-----EEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             EeeeeeECCCCCEEEEEecCCCCce-----EEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCC
Confidence            3336778888876653     2322     5799999999977654322222234999999776652   1         


Q ss_pred             --CeEEEEEcCCCee--eEEEeeccCC--cceEEEecCCCcEEEEeecCCC-CcEEEEEccCC-----ceeeeeccCCce
Q 014007          194 --QKIFVYNFADLKL--LHQIETIANP--KGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYASK-----RTKFIMAHDSRI  261 (432)
Q Consensus       194 --~~i~i~d~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~~~~-----~~~~~~~~~~~i  261 (432)
                        ..|+.|.+.+...  ...+......  ...+..+.+++.+++.+....+ ..+.+.|+...     ....+......+
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~  279 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV  279 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence              1378888876532  2334443333  3357789999988776655555 67888888764     455555555555


Q ss_pred             eEEEEcCCCCEEEEEcC---CCceEEEEECCCCce---EEEEEeCCCcCceEEEEECCCCCEEE-EEeCCC--eEEEEEe
Q 014007          262 ACFALTQDGQLLATSST---KGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLA-VSSDKG--TVHVFNL  332 (432)
Q Consensus       262 ~~~~~sp~~~~l~~~~~---dg~~i~vwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg--~i~iwd~  332 (432)
                      ....-+..+.+++....   ++. |.-.++.+...   ...+..+.....+..+..  .+.+|+ ....++  .|+++++
T Consensus       280 ~~~v~~~~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~  356 (414)
T PF02897_consen  280 EYYVDHHGDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL  356 (414)
T ss_dssp             EEEEEEETTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred             EEEEEccCCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence            44333334444444332   345 66677777652   223333221124555554  344444 444454  5778888


Q ss_pred             c
Q 014007          333 K  333 (432)
Q Consensus       333 ~  333 (432)
                      .
T Consensus       357 ~  357 (414)
T PF02897_consen  357 D  357 (414)
T ss_dssp             T
T ss_pred             C
Confidence            7

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.86  E-value=5.1e-06  Score=76.76  Aligned_cols=194  Identities=13%  Similarity=0.229  Sum_probs=119.6

Q ss_pred             EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCcee-EEee--cCCceEEEEEec-CccEEEe-------CCeEEEEE
Q 014007          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI-GELS--FRSEVRSVKLRR-DRIIVVL-------EQKIFVYN  200 (432)
Q Consensus       132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~-~~~~--~~~~v~~~~~~~-~~~~~~~-------d~~i~i~d  200 (432)
                      +++..+..+...++.|..+     |.|-+-.+....-- .++.  +...+++++|++ |...++.       |..+.|||
T Consensus        61 cva~~y~~d~cIlavG~at-----G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   61 CVASFYGNDRCILAVGSAT-----GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             eehhhcCCchhhhhhcccc-----CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3333344555667777777     99998887654322 3333  778899999998 4445542       67899999


Q ss_pred             cCCC--eeeEE--Eee-ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcC-CCCEEE
Q 014007          201 FADL--KLLHQ--IET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLA  274 (432)
Q Consensus       201 ~~~~--~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~  274 (432)
                      +.++  .+...  +.. .......++|--+.+  ++. +|.....+.++|++........-....+..+..+| .+.|++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvl-aGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcc--hhh-cccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee
Confidence            9875  22211  111 223344566663333  333 46677899999999654444334455677788888 777876


Q ss_pred             EEcCCCceEEEEEC-CCCc-eEEEEEeCC--CcCceEEEEECCCCC-EEEEEe-CCCeEEEEEecCC
Q 014007          275 TSSTKGTLVRIFNT-LDGT-LLQEVRRGA--DRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVN  335 (432)
Q Consensus       275 ~~~~dg~~i~vwd~-~~~~-~~~~~~~~~--~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~  335 (432)
                      +-. ||. |.+||. +.-+ ++..+....  ....+..++|+|... .+++.. ..++|++||+...
T Consensus       213 s~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  213 SNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             ccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence            655 888 999993 3222 222222110  113489999999543 344444 6689999998653

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.86  E-value=0.015  Score=52.87  Aligned_cols=224  Identities=13%  Similarity=0.088  Sum_probs=102.7

Q ss_pred             CCCEEEEEc-C-CcEEEEEcC--CCeeEEEeeccc------CcceeEEEEeeeCCeEEEecCCCCCC-CCCCeEEEEeCC
Q 014007           96 DHGCFAAGT-D-HGFRIYNCD--PFREIFRRDFER------GGGIGVVEMLFRCNILALVGGGPDPQ-YPLNKVMIWDDH  164 (432)
Q Consensus        96 ~~~~l~~~~-~-~~i~iw~~~--~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~s~~~d~~-~~~~~v~iwd~~  164 (432)
                      +.++|++.+ . +.|.|+|+.  ..+....+.++.      ..-..-.....-+++..++++-.|+. ...|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            466788777 4 449999985  334444444431      01122233344567766655332211 223778899988


Q ss_pred             CCceeEEeec----CCceEEEEEecCccEEEe-----------------------CCeEEEEEcCCCeeeEEEeeccCC-
Q 014007          165 QSRCIGELSF----RSEVRSVKLRRDRIIVVL-----------------------EQKIFVYNFADLKLLHQIETIANP-  216 (432)
Q Consensus       165 ~~~~~~~~~~----~~~v~~~~~~~~~~~~~~-----------------------d~~i~i~d~~~~~~~~~~~~~~~~-  216 (432)
                      +.+.+...+.    ..--+.+-|.|....+++                       ..++.+||+.+.+.++++...... 
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            7777776662    223456667776655552                       358999999999999999765432 


Q ss_pred             -cceEEEecC--CCcEEEEeecCCCCcEEEEEc-cCC-----ceeeeec-----------------cCCceeEEEEcCCC
Q 014007          217 -KGLCAVSQG--VGSLVLVCPGLQKGQVRVEHY-ASK-----RTKFIMA-----------------HDSRIACFALTQDG  270 (432)
Q Consensus       217 -~~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~-~~~-----~~~~~~~-----------------~~~~i~~~~~sp~~  270 (432)
                       .-.+.|..+  ..+-++.++  -..+|..|-- +.+     ++..+..                 -..-|+.|.+|.|.
T Consensus       246 ~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             ceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence             223555444  444444443  2344444432 221     2222211                 13457999999999


Q ss_pred             CEEEEEcC-CCceEEEEECCCCc---eEEEEEeCC--------------CcCceEEEEECCCCCEEEEEe
Q 014007          271 QLLATSST-KGTLVRIFNTLDGT---LLQEVRRGA--------------DRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       271 ~~l~~~~~-dg~~i~vwd~~~~~---~~~~~~~~~--------------~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      ++|..++. .|. |+.||+.+..   ++..+..+.              -.+...-+..|-||+.|...+
T Consensus       324 rfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  324 RFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             CEEEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            99987664 677 9999998743   333333211              112346778888998887654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.85  E-value=0.014  Score=49.88  Aligned_cols=194  Identities=12%  Similarity=0.089  Sum_probs=104.1

Q ss_pred             CCCCCCCeEEEEEcCCCCEEE-EEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           81 SSSPPPTLLHISFNQDHGCFA-AGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~-~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      +.+-...+..|+|+|+...|+ +....+ |..++.+ ++......+.  .....-.+++..++.++++..++     +.+
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~--g~~D~EgI~y~g~~~~vl~~Er~-----~~L   88 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD--GFGDYEGITYLGNGRYVLSEERD-----QRL   88 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S--S-SSEEEEEE-STTEEEEEETTT-----TEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC--CCCCceeEEEECCCEEEEEEcCC-----CcE
Confidence            444455699999999866555 444444 6556653 4444334453  45567788888899998888777     999


Q ss_pred             EEEeCCCCc------eeEEee------cCCceEEEEEecCcc-EEEe--CCeEEEEEcCC---CeeeEEEe--------e
Q 014007          159 MIWDDHQSR------CIGELS------FRSEVRSVKLRRDRI-IVVL--EQKIFVYNFAD---LKLLHQIE--------T  212 (432)
Q Consensus       159 ~iwd~~~~~------~~~~~~------~~~~v~~~~~~~~~~-~~~~--d~~i~i~d~~~---~~~~~~~~--------~  212 (432)
                      .++++....      ....+.      ++..+-+++|++.+. +++.  ..-..+|.+..   ...+....        .
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            999884321      122222      345689999999644 4443  33344554432   11111111        1


Q ss_pred             ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccC---------CceeEEEEcCCCCEEEEEcCCCceE
Q 014007          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------SRIACFALTQDGQLLATSSTKGTLV  283 (432)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---------~~i~~~~~sp~~~~l~~~~~dg~~i  283 (432)
                      .......+.++|..+++++.+  .....|..+|.....+..+.-..         .....|+|.++|++.++ ++-+. .
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS--~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNl-f  244 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILS--DESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNL-F  244 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEE--TTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTE-E
T ss_pred             eeccccceEEcCCCCeEEEEE--CCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCce-E
Confidence            223456789999988888875  47888999996665444333211         35779999999965544 45554 5


Q ss_pred             EEE
Q 014007          284 RIF  286 (432)
Q Consensus       284 ~vw  286 (432)
                      ++|
T Consensus       245 y~f  247 (248)
T PF06977_consen  245 YRF  247 (248)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.83  E-value=0.0029  Score=45.73  Aligned_cols=67  Identities=22%  Similarity=0.372  Sum_probs=51.5

Q ss_pred             eeEEEEcC---CC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          261 IACFALTQ---DG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       261 i~~~~~sp---~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      |++|++..   +| +.|++|+.|.. ||+|+  ..+.+.++.   ....|++++-... ..++.+-.+|+|-+|+-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~--~~e~~~Ei~---e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFE-IRVFK--GDEIVAEIT---ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcE-EEEEe--CCcEEEEEe---cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence            55666654   33 57999999999 99997  557888887   4478888887766 5688888999999997643

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.83  E-value=0.025  Score=52.06  Aligned_cols=76  Identities=16%  Similarity=0.289  Sum_probs=50.9

Q ss_pred             CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC-----------------CCEEE-E
Q 014007          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-----------------AQWLA-V  320 (432)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----------------~~~l~-~  320 (432)
                      ..+.++..+|++++.|+...-|. |.++|+.++..++.+++-. ...+.-+.....                 ..+|+ -
T Consensus       308 R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            45788999999998888888888 9999999998888877532 111111111111                 11222 3


Q ss_pred             EeCCCeEEEEEecCCC
Q 014007          321 SSDKGTVHVFNLKVNS  336 (432)
Q Consensus       321 ~~~dg~i~iwd~~~~~  336 (432)
                      +-.-|.|.||.++++.
T Consensus       386 aprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  386 APRRGILEVWSMRQGP  401 (415)
T ss_pred             eccCCeEEEEecCCCC
Confidence            4467888888888876

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.80  E-value=0.016  Score=49.18  Aligned_cols=157  Identities=11%  Similarity=0.076  Sum_probs=104.4

Q ss_pred             CCCceeEEeecCCceEEEEEecCccEEE-e----CCeEEEEEcCCCeeeEEEeeccC--CcceEEEecCCCcEEEEeecC
Q 014007          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV-L----EQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPGL  236 (432)
Q Consensus       164 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~----d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~  236 (432)
                      +.|+++...........++++|.....+ .    .-...++|....+.+..+....+  -...=.|++||..+| ++-+.
T Consensus        56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LY-ATEnd  134 (366)
T COG3490          56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLY-ATEND  134 (366)
T ss_pred             cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEE-eecCC
Confidence            4577777777777778899998654433 2    44688999988877666644332  223457999998776 33222


Q ss_pred             ---CCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCC------------------CceEEEEECCCCce
Q 014007          237 ---QKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTK------------------GTLVRIFNTLDGTL  293 (432)
Q Consensus       237 ---~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d------------------g~~i~vwd~~~~~~  293 (432)
                         ..|.|-|||.+.  .++-.+..|.-....+.+.+||+.|+.+...                  -. +.+.|..+|++
T Consensus       135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS-lvlld~atG~l  213 (366)
T COG3490         135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS-LVLLDAATGNL  213 (366)
T ss_pred             CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc-EEEEeccccch
Confidence               348899999987  3455677888888999999999998876531                  11 44555556665


Q ss_pred             EEEEEeC--CCcCceEEEEECCCCCEEEEEe
Q 014007          294 LQEVRRG--ADRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       294 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      +.+....  .+...|..++..+||+.++.+-
T Consensus       214 iekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         214 IEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             hhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence            5443322  2335677888888887665543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.73  E-value=0.025  Score=50.98  Aligned_cols=198  Identities=11%  Similarity=0.037  Sum_probs=93.3

Q ss_pred             eeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCceeEEeecC-CceEEEEEecCccEEE-e--CCeEEEEEcCCCeeeEEE
Q 014007          136 LFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKLLHQI  210 (432)
Q Consensus       136 ~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~-~--d~~i~i~d~~~~~~~~~~  210 (432)
                      +|.+++. ++.++..+   ....+++.|+.+++..+--... .......++++.+.++ .  +..|+-.|+.+.+....+
T Consensus        42 ~ft~dG~kllF~s~~d---g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFD---GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TT---SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CcCCCCCEEEEEeccC---CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence            4556664 33344333   1267888899988776655532 3333566778777665 3  458999999998765555


Q ss_pred             eeccCCcceEEEec--CCCcEEEEeecCC-------------------CCcEEEEEccCCceeeeeccCCceeEEEEcCC
Q 014007          211 ETIANPKGLCAVSQ--GVGSLVLVCPGLQ-------------------KGQVRVEHYASKRTKFIMAHDSRIACFALTQD  269 (432)
Q Consensus       211 ~~~~~~~~~~~~~~--~~~~~~~~~~g~~-------------------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~  269 (432)
                      .....-+....+..  ++..++-+.....                   ...|...|+.++....+..-...+.-+.|+|.
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            55555554445543  3333221111111                   14455567777777777777888999999995


Q ss_pred             C-CEEEEEcC---CCceEEEEECC-CCceEEEEEeCCCcCceEEEEECCCCCEEEEEe-----CCCeEEEEEecCCC
Q 014007          270 G-QLLATSST---KGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-----DKGTVHVFNLKVNS  336 (432)
Q Consensus       270 ~-~~l~~~~~---dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----~dg~i~iwd~~~~~  336 (432)
                      . ..|+-|-+   +...-|||-++ .+.....+..+.....+..=-|.|||..|.--+     .+..|.-+|+.+++
T Consensus       199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            4 45555443   11002455433 333333333222223456667899998665422     23355666666654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.73  E-value=0.023  Score=52.39  Aligned_cols=230  Identities=15%  Similarity=0.150  Sum_probs=113.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~  165 (432)
                      .|+.+.|+++..-|++|...| |.||.....+..-.+.     ...-..+.+.+    +-..+       +.-.+-|+..
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~-----~~~~~~~~~~~----~~~~~-------~~~~l~di~~   66 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE-----QPPDLDYNFRR----FSLNN-------SPGKLTDISD   66 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S------GGG-------SS-SEEE-GG
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccC-----CCcccCccccc----ccccC-------CCcceEEehh
Confidence            589999999988888888666 8888764332211000     01111111100    00000       1111222211


Q ss_pred             --------C-ceeEEee-cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeecc--------CCcceEEEe--
Q 014007          166 --------S-RCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIA--------NPKGLCAVS--  223 (432)
Q Consensus       166 --------~-~~~~~~~-~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~--  223 (432)
                              | .+...+. ..++|++++.+.-|-..+.  +|.+.|.|++....+..-....        ..++.+.|.  
T Consensus        67 r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm  146 (395)
T PF08596_consen   67 RAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM  146 (395)
T ss_dssp             G--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE
T ss_pred             hCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE
Confidence                    1 1223333 4789999999877766653  8999999998877776632222        133445444  


Q ss_pred             -cCCCc---EEEEeecCCCCcEEEEEccC---Cce-----eeeeccCCceeEEE-EcCC---------------------
Q 014007          224 -QGVGS---LVLVCPGLQKGQVRVEHYAS---KRT-----KFIMAHDSRIACFA-LTQD---------------------  269 (432)
Q Consensus       224 -~~~~~---~~~~~~g~~d~~i~i~d~~~---~~~-----~~~~~~~~~i~~~~-~sp~---------------------  269 (432)
                       ..++.   +.+. .|...|.+.+|.+.-   +..     .....+.+.|..|. |+.+                     
T Consensus       147 ~~~~D~ySSi~L~-vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i  225 (395)
T PF08596_consen  147 TLGGDGYSSICLL-VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI  225 (395)
T ss_dssp             E-TTSSSEEEEEE-EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred             ecCCCcccceEEE-EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence             22222   3333 466789999998752   111     11124556665554 3221                     


Q ss_pred             CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC-----CCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS-----SNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       270 ~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      ..++++++.. . ||++...+.+..++...  .......+.+-     ..+..|++-..+|.|++|.+...+.
T Consensus       226 ~g~vVvvSe~-~-irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke  294 (395)
T PF08596_consen  226 PGYVVVVSES-D-IRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE  294 (395)
T ss_dssp             -EEEEEE-SS-E-EEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred             CcEEEEEccc-c-eEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence            1245555544 4 99999988887766652  22233344452     3566788888999999999988774

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.73  E-value=0.009  Score=59.21  Aligned_cols=194  Identities=12%  Similarity=0.126  Sum_probs=112.0

Q ss_pred             CceEEEEEe--cCccEEEeCCeEEEEEcCC-Cee-----eEEEeeccCCc---ceEEEecCCCcEEEEeecCCCCcEEEE
Q 014007          176 SEVRSVKLR--RDRIIVVLEQKIFVYNFAD-LKL-----LHQIETIANPK---GLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (432)
Q Consensus       176 ~~v~~~~~~--~~~~~~~~d~~i~i~d~~~-~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~d~~i~i~  244 (432)
                      ....+|+..  .|..+++-+..|-|+.... +.+     +..+....+..   ..+-++-....+++. .......|+-.
T Consensus       431 ~~n~~Lavg~k~DrSfVvRg~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~-~~~~~~~ly~m  509 (794)
T PF08553_consen  431 EKNSSLAVGYKNDRSFVVRGSKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILL-DPNNPNKLYKM  509 (794)
T ss_pred             CccceeEeeeccCceEEECCCcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEee-cCCCCCceEEE
Confidence            345556655  4666777677888888652 221     11111111100   011222233444444 33356788888


Q ss_pred             EccCCce-eeeeccCCc-eeEEEEcCC-------CCEEEEEcCCCceEEEEECCCCc--eEE-EEEeCCCcCceEEEEEC
Q 014007          245 HYASKRT-KFIMAHDSR-IACFALTQD-------GQLLATSSTKGTLVRIFNTLDGT--LLQ-EVRRGADRAEIYSLAFS  312 (432)
Q Consensus       245 d~~~~~~-~~~~~~~~~-i~~~~~sp~-------~~~l~~~~~dg~~i~vwd~~~~~--~~~-~~~~~~~~~~i~~~~~s  312 (432)
                      |+..+++ ..+..|... |..+  .|+       ..--+.|-.+.. |..||.|-..  ++. ....-.......|++-+
T Consensus       510 DLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~-lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt  586 (794)
T PF08553_consen  510 DLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNS-LFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT  586 (794)
T ss_pred             ecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCc-eEEeccCCCCCceeeccccccccCCCceEEEec
Confidence            9988665 445555433 4444  343       223455666667 9999998632  331 11111133467788877


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  392 (432)
                      .+| +||+|+.+|.||+||-. ++..+                                  ..+.+-..+|..|..+.||
T Consensus       587 ~~G-~iavgs~~G~IRLyd~~-g~~AK----------------------------------T~lp~lG~pI~~iDvt~DG  630 (794)
T PF08553_consen  587 EDG-YIAVGSNKGDIRLYDRL-GKRAK----------------------------------TALPGLGDPIIGIDVTADG  630 (794)
T ss_pred             CCc-eEEEEeCCCcEEeeccc-chhhh----------------------------------hcCCCCCCCeeEEEecCCC
Confidence            776 68999999999999943 22111                                  1233445689999999999


Q ss_pred             CEEEEEecCCeEEEEEec
Q 014007          393 NTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       393 ~~l~~~~~dg~v~iw~~~  410 (432)
                      ++|++.| +..+.+++.-
T Consensus       631 kwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  631 KWILATC-KTYLLLIDTL  647 (794)
T ss_pred             cEEEEee-cceEEEEEEe
Confidence            9998766 5566666653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.72  E-value=5.1e-05  Score=72.60  Aligned_cols=110  Identities=18%  Similarity=0.179  Sum_probs=87.0

Q ss_pred             eEEEEcCCCCEEEEEcC----CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          262 ACFALTQDGQLLATSST----KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       262 ~~~~~sp~~~~l~~~~~----dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      +-..|+|...++++++.    .|. |.|| ..+|++.....   .+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GS-VtIf-adtGEPqr~Vt---~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGS-VTIF-ADTGEPQRDVT---YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCce-EEEE-ecCCCCCcccc---cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence            44578998888887764    466 8898 47887655554   224467899999988999999999999999887651


Q ss_pred             CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                                         -.....|...|..+.||++|..|+++..-|.|.+|.+|.
T Consensus        94 -----------------------------------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   94 -----------------------------------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             -----------------------------------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence                                               011334677899999999999999999999999999985

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.003  Score=60.71  Aligned_cols=152  Identities=15%  Similarity=0.148  Sum_probs=99.0

Q ss_pred             cCCCCCCCeEEEEEcCC-------------CCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-----
Q 014007           80 TSSSPPPTLLHISFNQD-------------HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-----  140 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~-------------~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----  140 (432)
                      ....|.+.|.-..+.-+             |.++++|+++| |.|-.+.+.+......+    ...+..++++|+     
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df----~rpiksial~Pd~~~~~  128 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF----KRPIKSIALHPDFSRQQ  128 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec----CCcceeEEeccchhhhh
Confidence            34556666666665544             99999999666 99988877776644444    466777888886     


Q ss_pred             eEEEecCCCCCCCCCCeEEEEeCCC---CceeEEee-cCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCC
Q 014007          141 ILALVGGGPDPQYPLNKVMIWDDHQ---SRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANP  216 (432)
Q Consensus       141 ~~~~~s~~~d~~~~~~~v~iwd~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  216 (432)
                      ...+++|+.-     | +.++.-.-   ...+ .+. ..++|.++.|..+-...+.|--|++||+.+++.+..++.....
T Consensus       129 sk~fv~GG~a-----g-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~  201 (846)
T KOG2066|consen  129 SKQFVSGGMA-----G-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQS  201 (846)
T ss_pred             hhheeecCcc-----e-EEEehhhhhcCccce-eeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCC
Confidence            4567777765     6 77775221   1122 233 6899999999655444445888999999998888777544433


Q ss_pred             cc------eEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007          217 KG------LCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (432)
Q Consensus       217 ~~------~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  247 (432)
                      ++      .+.|.++.  .+++  | ...+|+|..++
T Consensus       202 ~R~e~fpphl~W~~~~--~LVI--G-W~d~v~i~~I~  233 (846)
T KOG2066|consen  202 VRPELFPPHLHWQDED--RLVI--G-WGDSVKICSIK  233 (846)
T ss_pred             CCcccCCCceEecCCC--eEEE--e-cCCeEEEEEEe
Confidence            32      24444443  3333  2 44678887776

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.63  E-value=1.2e-05  Score=74.42  Aligned_cols=164  Identities=15%  Similarity=0.117  Sum_probs=107.0

Q ss_pred             ccCCCCCCCeEEEEEcC-CCCEEEEEcC-----CcEEEEEcCCC--eeEEEeecccCcceeEEEEeeeCCeEEEecCCCC
Q 014007           79 STSSSPPPTLLHISFNQ-DHGCFAAGTD-----HGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~-----~~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  150 (432)
                      .+..++....++++|++ |...||+|-+     ..+.|||+.+.  .......+..+.......++|..+...+.+|...
T Consensus        96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s  175 (783)
T KOG1008|consen   96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS  175 (783)
T ss_pred             eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence            45666778899999998 5678888852     23999999765  1111122322233444577787888888888876


Q ss_pred             CCCCCCeEEEEeCCCCceeEEeecCCceEEEEEec-CccEEE--eCCeEEEEE-cCC-CeeeEEEeeccC----CcceEE
Q 014007          151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV--LEQKIFVYN-FAD-LKLLHQIETIAN----PKGLCA  221 (432)
Q Consensus       151 ~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~--~d~~i~i~d-~~~-~~~~~~~~~~~~----~~~~~~  221 (432)
                           ..+.++|++........-....+..+.+.| .+.+++  .||.|.+|| .+. ..++..+....+    .+..++
T Consensus       176 -----r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~a  250 (783)
T KOG1008|consen  176 -----RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALA  250 (783)
T ss_pred             -----chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEE
Confidence                 799999986432111111344677788888 777888  499999999 332 222332222222    366789


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccC
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~  248 (432)
                      |.|-...++.++ ....+.|+++|+..
T Consensus       251 ycPtrtglla~l-~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  251 YCPTRTGLLAVL-SRDSITIRLYDICV  276 (783)
T ss_pred             eccCCcchhhhh-ccCcceEEEecccc
Confidence            999877665544 34678999999865

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.59  E-value=0.059  Score=52.12  Aligned_cols=233  Identities=10%  Similarity=0.069  Sum_probs=126.0

Q ss_pred             EEEEc-CCcEEEEEcCCCeeEEEeecccCcc--eeEEE-EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-c
Q 014007          100 FAAGT-DHGFRIYNCDPFREIFRRDFERGGG--IGVVE-MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F  174 (432)
Q Consensus       100 l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~--~~v~~-~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~  174 (432)
                      +++++ ++.+.-+|..+++........ .+.  ..+.+ .... ++..++.......-.+|.|.-+|.++|+.+..+. .
T Consensus       123 v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~  200 (527)
T TIGR03075       123 VFFGTLDARLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV  200 (527)
T ss_pred             EEEEcCCCEEEEEECCCCCEEeecccc-cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence            34444 556788888888777554432 111  11111 1112 3344443221000012899999999999887765 1


Q ss_pred             -CC------------------------------ceE-EEEEecCccEEE--e-------------CC----eEEEEEcCC
Q 014007          175 -RS------------------------------EVR-SVKLRRDRIIVV--L-------------EQ----KIFVYNFAD  203 (432)
Q Consensus       175 -~~------------------------------~v~-~~~~~~~~~~~~--~-------------d~----~i~i~d~~~  203 (432)
                       ..                              .+. .+++.+...++.  +             |+    .|.-.|+++
T Consensus       201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T  280 (527)
T TIGR03075       201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT  280 (527)
T ss_pred             CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence             11                              111 234555433333  2             11    677889999


Q ss_pred             CeeeEEEeeccCCcc---------eEEEecCCCcEEEEeecCCCCcEEEEEccCCcee---------ee----eccC-Cc
Q 014007          204 LKLLHQIETIANPKG---------LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---------FI----MAHD-SR  260 (432)
Q Consensus       204 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---------~~----~~~~-~~  260 (432)
                      |+..-.++...+.+.         .+.+..+|+..-++..+..+|.+.+.|-++++..         ..    .... .+
T Consensus       281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p  360 (527)
T TIGR03075       281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRP  360 (527)
T ss_pred             CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCC
Confidence            998877765433221         2333346653223334568999999998875542         11    0000 00


Q ss_pred             e----------------------------eEEEEcCCCCEEEEEcCC---------------------------------
Q 014007          261 I----------------------------ACFALTQDGQLLATSSTK---------------------------------  279 (432)
Q Consensus       261 i----------------------------~~~~~sp~~~~l~~~~~d---------------------------------  279 (432)
                      +                            ..++++|+..+++....+                                 
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~  440 (527)
T TIGR03075       361 IEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHM  440 (527)
T ss_pred             ccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCc
Confidence            0                            125666665555443332                                 


Q ss_pred             CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      |. |.=+|+.+++.+-......  ....+. ..-.+.+++.++.+|.++.+|.++++.+
T Consensus       441 g~-l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       441 GS-LIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             ee-EEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence            34 7778888888877666321  111111 1124556777888999999999999843

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00037  Score=64.82  Aligned_cols=93  Identities=16%  Similarity=0.178  Sum_probs=74.9

Q ss_pred             CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCcee-EEEEcCCCCEEEEEcCCCceEEEEECCCCceE
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA-CFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~-~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~  294 (432)
                      .+..+.|+|.-+-++++   ..+|.|.+..+.-.++.++.-|...++ +++|.|||++||+|-.||+ |++.|+.++..+
T Consensus        22 ~i~~~ewnP~~dLiA~~---t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l   97 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATR---TEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRL   97 (665)
T ss_pred             ceEEEEEcCccchhhee---ccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCce
Confidence            34567888877655444   478999999988888888887777777 9999999999999999999 999999999888


Q ss_pred             EEEEeCCCcCceEEEEECC
Q 014007          295 QEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       295 ~~~~~~~~~~~i~~~~~s~  313 (432)
                      ..+... ....|.++-|++
T Consensus        98 ~~~~~s-~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFS-VETDISKGIWDR  115 (665)
T ss_pred             eccccc-cccchheeeccc
Confidence            774322 346788888863

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.55  E-value=0.025  Score=48.98  Aligned_cols=159  Identities=19%  Similarity=0.155  Sum_probs=94.9

Q ss_pred             CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE-CCCCceE
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN-TLDGTLL  294 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd-~~~~~~~  294 (432)
                      .+...+++++++.++++..+.....++++.........+  ....+..-.|++++...+....+.. .+++. ..+++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCc-eEEEEecCCCcce
Confidence            566899999998877665232345555555444333333  2337888899999887777776666 67763 3344332


Q ss_pred             -EEEEeCCCcCceEEEEECCCCCEEEEEe---CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecc
Q 014007          295 -QEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSE  370 (432)
Q Consensus       295 -~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (432)
                       ..+........|..+.+||||..+|...   .++.|++--+.....-                        .+......
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g------------------------~~~~l~~~  157 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG------------------------VPRRLTGP  157 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC------------------------Ccceeccc
Confidence             2222211112899999999999888765   4578888877654311                        00000000


Q ss_pred             eeeEEEEecCCCceEEEEccCCCEEEEEecCCe
Q 014007          371 WSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS  403 (432)
Q Consensus       371 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  403 (432)
                        +.........+..++|.+++.+++.+...+.
T Consensus       158 --~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  158 --RRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             --eEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence              1111122346889999999888776665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.002  Score=58.94  Aligned_cols=143  Identities=15%  Similarity=0.315  Sum_probs=97.4

Q ss_pred             CccEEEeC----CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe----ecCCCCcEEEEEccCCc---eeee
Q 014007          186 DRIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC----PGLQKGQVRVEHYASKR---TKFI  254 (432)
Q Consensus       186 ~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~d~~i~i~d~~~~~---~~~~  254 (432)
                      +..++..+    ..++-.|++.|+.+.+++.+.. |..+.+.|+.+..-+..    -|-.+..|.-||.+-..   +...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            44445543    4688899999999999987766 77788888765322211    13468889999988532   2222


Q ss_pred             ecc----CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007          255 MAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (432)
Q Consensus       255 ~~~----~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  330 (432)
                      +.|    .....|++-..+| ++++|+.+|. ||+||- .++.-++.-.+ ...+|..+..+.||++|++.+ +..+.+-
T Consensus       423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGKwil~Tc-~tyLlLi  497 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGKWILATC-KTYLLLI  497 (644)
T ss_pred             eccccccccccceeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc-cCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence            333    2345566666666 7899999999 999995 55444433322 447899999999999987766 5667777


Q ss_pred             EecC
Q 014007          331 NLKV  334 (432)
Q Consensus       331 d~~~  334 (432)
                      ++.-
T Consensus       498 ~t~~  501 (644)
T KOG2395|consen  498 DTLI  501 (644)
T ss_pred             EEec
Confidence            7653

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00063  Score=63.37  Aligned_cols=79  Identities=19%  Similarity=0.228  Sum_probs=67.7

Q ss_pred             CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE-EEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY-SLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      ...|.-+.|+|.-.++|++..+|. |-+..+. .+.+.++..+.  ..++ +++|.|||+.||.|-.||+|++-|+.++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~qRlwtip~p~--~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGE-LLIHRLN-WQRLWTIPIPG--ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCc-EEEEEec-cceeEeccCCC--CccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            456788999999999999999999 9998876 77888887432  4455 99999999999999999999999999988


Q ss_pred             CCCC
Q 014007          337 GSAR  340 (432)
Q Consensus       337 ~~~~  340 (432)
                      .+..
T Consensus        96 ~l~~   99 (665)
T KOG4640|consen   96 RLVS   99 (665)
T ss_pred             ceec
Confidence            6654

>smart00320 WD40 WD40 repeats

Probab=97.46  E-value=0.00039  Score=39.68  Aligned_cols=36  Identities=17%  Similarity=0.165  Sum_probs=31.8

Q ss_pred             eEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       373 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      ...+..|...|.++.|.++++.+++++.||.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            445667888999999999999999999999999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.44  E-value=0.037  Score=54.02  Aligned_cols=149  Identities=19%  Similarity=0.182  Sum_probs=89.4

Q ss_pred             CceEEEEEecCccEEEe---------CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec---------
Q 014007          176 SEVRSVKLRRDRIIVVL---------EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG---------  235 (432)
Q Consensus       176 ~~v~~~~~~~~~~~~~~---------d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------  235 (432)
                      ..+.+.+++|+|..++.         |.  .|.+++.. +.. ..+.. ......-.|+|+|+.++++..+         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            35778899999988772         22  45565642 222 33322 2236778999998877665422         


Q ss_pred             CCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEE---EECCCCce-E---EEEEeCCCcCceEE
Q 014007          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI---FNTLDGTL-L---QEVRRGADRAEIYS  308 (432)
Q Consensus       236 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v---wd~~~~~~-~---~~~~~~~~~~~i~~  308 (432)
                      ...+.+.+.+++.+....  .....|..+.|||||..++... ++. |++   -....|.. +   ..+... ....+.+
T Consensus       427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vvr~~~G~~~l~~~~~l~~~-l~~~~~~  501 (591)
T PRK13616        427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGK-VYLAVVEQTEDGQYALTNPREVGPG-LGDTAVS  501 (591)
T ss_pred             CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEEeCCCCceeecccEEeecc-cCCcccc
Confidence            123445444555544433  3456799999999999888766 466 776   45445541 1   112211 2234688


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEec
Q 014007          309 LAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       309 ~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      +.|..++.++ ++..++...+|.+.
T Consensus       502 l~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        502 LDWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             ceEecCCEEE-EEecCCCCceEEEe
Confidence            9999999855 55555555556554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.00091  Score=66.21  Aligned_cols=96  Identities=18%  Similarity=0.270  Sum_probs=71.0

Q ss_pred             cCCCCcEEEEEccCCce--eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-CceEEEEE
Q 014007          235 GLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLAF  311 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~~~~  311 (432)
                      |+..|.+...|+.+...  ..-..-.++|++++|+.+|++++.|-.+|. |.+||+..++.++.+..+.++ ..+..+.+
T Consensus       105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~  183 (1206)
T KOG2079|consen  105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTGVIFVGR  183 (1206)
T ss_pred             EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccceEEEEEE
Confidence            34678888888877422  222334678999999999999999999999 999999999999888764432 23444555


Q ss_pred             CCCCCEEEEEeCCCeEEEEEec
Q 014007          312 SSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       312 s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      ..++..++++...|.  +|.+.
T Consensus       184 t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  184 TSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eCCCcEEEEccCCCc--eEEEE
Confidence            556667888877776  66654

>smart00320 WD40 WD40 repeats

Probab=97.43  E-value=0.00067  Score=38.65  Aligned_cols=38  Identities=32%  Similarity=0.639  Sum_probs=31.8

Q ss_pred             ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  331 (432)
                      ++...+..  |...|.++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKG--HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEe--cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44555653  557899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.40  E-value=0.031  Score=46.76  Aligned_cols=113  Identities=15%  Similarity=0.133  Sum_probs=81.7

Q ss_pred             EEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~  299 (432)
                      +.+.++.+.+++  .|+..+.+.-.|..++.+.--..-...|.+-+.- -|++++.|+..|. +++.+.++|.....+..
T Consensus        16 LVV~~dskT~v~--igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~-lYfl~~~tGs~~w~f~~   91 (354)
T KOG4649|consen   16 LVVCNDSKTLVV--IGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGG-LYFLCVKTGSQIWNFVI   91 (354)
T ss_pred             EEEecCCceEEE--EecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCc-EEEEEecchhheeeeee
Confidence            344455544433  3567888888888887766544445555554443 5778999999999 99999999988877774


Q ss_pred             CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       300 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      ..  .--......+++..+..|+.|+..+..|.++..++
T Consensus        92 ~~--~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen   92 LE--TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV  128 (354)
T ss_pred             hh--hhccceEEcCCCceEEEecCCCcEEEecccccceE
Confidence            21  22233456679999999999999999999988754

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.39  E-value=0.069  Score=45.61  Aligned_cols=184  Identities=9%  Similarity=0.071  Sum_probs=110.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-CCc--EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           84 PPPTLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~-~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      ...-...+.|..+|.++-+.+ -+.  |+.+|+++++......+.  ...---.+....+..+.++--.      +...+
T Consensus        43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--~~~FgEGit~~~d~l~qLTWk~------~~~f~  114 (264)
T PF05096_consen   43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP--PRYFGEGITILGDKLYQLTWKE------GTGFV  114 (264)
T ss_dssp             TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T--TT--EEEEEEETTEEEEEESSS------SEEEE
T ss_pred             CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC--ccccceeEEEECCEEEEEEecC------CeEEE
Confidence            344556788877787766655 222  999999998877666665  4444456666788888888765      89999


Q ss_pred             EeCCCCceeEEeecCCceEEEEEecCccEEEeCC--eEEEEEcCCCeeeEEEeeccC--C---cceEEEecCCCcEEEEe
Q 014007          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQ--KIFVYNFADLKLLHQIETIAN--P---KGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       161 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~  233 (432)
                      ||..+.+.+.++...+.=+.++. .+..++.+||  .|+.+|..+.+....+....+  +   ++.+.+. +| . +.|.
T Consensus       115 yd~~tl~~~~~~~y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~-IyAN  190 (264)
T PF05096_consen  115 YDPNTLKKIGTFPYPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-K-IYAN  190 (264)
T ss_dssp             EETTTTEEEEEEE-SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-E-EEEE
T ss_pred             EccccceEEEEEecCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-E-EEEE
Confidence            99999999999997777788883 2334555766  789999888777766654322  2   2234443 22 2 2222


Q ss_pred             ecCCCCcEEEEEccCCceeeee----------------ccCCceeEEEEcCCCCEEEEEcCCC
Q 014007          234 PGLQKGQVRVEHYASKRTKFIM----------------AHDSRIACFALTQDGQLLATSSTKG  280 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~~~~~~~~----------------~~~~~i~~~~~sp~~~~l~~~~~dg  280 (432)
                       --....|...|..++.+....                ....-.+.|++.|....|...+..-
T Consensus       191 -VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~W  252 (264)
T PF05096_consen  191 -VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLW  252 (264)
T ss_dssp             -ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-
T ss_pred             -eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCC
Confidence             123455666666665543221                1134578999998776665555443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.37  E-value=0.073  Score=45.34  Aligned_cols=240  Identities=17%  Similarity=0.134  Sum_probs=133.1

Q ss_pred             CCeEEEEEcCCCC-EEEEEcC-Cc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007           86 PTLLHISFNQDHG-CFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        86 ~~v~~~~~s~~~~-~l~~~~~-~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      ..-..|+|+|... -++.+-. ++ ..++|.+..+......-. ...--.-.-.|++++.+|.....|..-..|.|-|||
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd  146 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-EGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD  146 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-cCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence            3445678888654 4556653 33 788888776654322211 111112234589999999887776444458999999


Q ss_pred             CCCC-ceeEEee-cCCceEEEEEecCccEEE-eCCeEEEE--------------------EcCCCeeeEEEe----eccC
Q 014007          163 DHQS-RCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVY--------------------NFADLKLLHQIE----TIAN  215 (432)
Q Consensus       163 ~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~--------------------d~~~~~~~~~~~----~~~~  215 (432)
                      ...+ +.+.++. |.-....+.+.+||+.++ .+|-|...                    |..+|+.+.+..    .+..
T Consensus       147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l  226 (366)
T COG3490         147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL  226 (366)
T ss_pred             cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence            8754 5566676 777778899999999888 46655544                    323333332211    1122


Q ss_pred             CcceEEEecCCCcEEEEee--cC-CCCcEEEEE-ccCCceeeee-------ccCCceeEEEEcCCCCEEEEEcCCCceEE
Q 014007          216 PKGLCAVSQGVGSLVLVCP--GL-QKGQVRVEH-YASKRTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVR  284 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~--g~-~d~~i~i~d-~~~~~~~~~~-------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~  284 (432)
                      .++.++..+||. +++.|-  |. .|---.+=- ..++.+..+.       .....|-+|+.+.+..+++..+-.|+...
T Consensus       227 SiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v  305 (366)
T COG3490         227 SIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV  305 (366)
T ss_pred             ceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence            344455555543 122220  00 000000000 0111111111       22346778888876666666666665478


Q ss_pred             EEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      +||..+|..+..-..    .....++-  ...-++..+.+|.+.++.-.
T Consensus       306 i~da~tG~vv~~a~l----~daaGva~--~~~gf~vssg~G~~~~~s~~  348 (366)
T COG3490         306 IWDAATGAVVSEAAL----PDAAGVAA--AKGGFAVSSGQGRIIFYSRA  348 (366)
T ss_pred             EEEcCCCcEEecccc----ccccccee--ccCceEEecCCceEEecccc
Confidence            999999988755432    12233333  33446666678888888443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.35  E-value=0.081  Score=45.39  Aligned_cols=162  Identities=8%  Similarity=0.089  Sum_probs=104.9

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEc
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNF  201 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~  201 (432)
                      +-...+.++.|+|+...+++....     ..-.++=..+|+.++++.  .-.....+.+..+++++++   ++.+.++.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~-----p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNK-----PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccceeeCCCcceEEEecCC-----CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            444558999999998777766655     566666667899999988  4456677889999999996   567777776


Q ss_pred             CCCeeeEE-------Eee--c-cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeecc-------CCc
Q 014007          202 ADLKLLHQ-------IET--I-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAH-------DSR  260 (432)
Q Consensus       202 ~~~~~~~~-------~~~--~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~-------~~~  260 (432)
                      ........       +..  + ......++|.+....++++=   +..-+.||.+....    ......+       -..
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D  234 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD  234 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---ccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence            65422111       111  1 23445789999988887764   56667777665422    1111111       235


Q ss_pred             eeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007          261 IACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (432)
Q Consensus       261 i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~  298 (432)
                      |.++.|++ .+.+|+-+.+++. +.-.|. +|..+..+.
T Consensus       235 vSgl~~~~~~~~LLVLS~ESr~-l~Evd~-~G~~~~~ls  271 (316)
T COG3204         235 VSGLEFNAITNSLLVLSDESRR-LLEVDL-SGEVIELLS  271 (316)
T ss_pred             cccceecCCCCcEEEEecCCce-EEEEec-CCCeeeeEE
Confidence            77788887 5566666777776 777774 555444443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.35  E-value=0.074  Score=45.60  Aligned_cols=183  Identities=8%  Similarity=0.032  Sum_probs=110.4

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      ..+-...|.++.|+|+.+.|.+..++. -.|+-...++......+.  .-...-.+.|..++.++++-.++     +.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~--g~~DpE~Ieyig~n~fvi~dER~-----~~l~  153 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT--GFSDPETIEYIGGNQFVIVDERD-----RALY  153 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc--ccCChhHeEEecCCEEEEEehhc-----ceEE
Confidence            344455599999999999887777666 444443455555444444  34445567888999999999988     8999


Q ss_pred             EEeCCCCceeE-----Eee-----c-CCceEEEEEecCccEEE-e--CCeEEEEEcCCCe-e--eEEEe-------eccC
Q 014007          160 IWDDHQSRCIG-----ELS-----F-RSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLK-L--LHQIE-------TIAN  215 (432)
Q Consensus       160 iwd~~~~~~~~-----~~~-----~-~~~v~~~~~~~~~~~~~-~--d~~i~i~d~~~~~-~--~~~~~-------~~~~  215 (432)
                      ++.+..+..+.     .+.     + +....+++|.+....+. +  .+-+.||.+.... .  ++...       ..-.
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~  233 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL  233 (316)
T ss_pred             EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence            88876553211     111     2 45678899999765544 3  3445555443221 1  11100       1123


Q ss_pred             CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccC---------CceeEEEEcCCCCE
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------SRIACFALTQDGQL  272 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---------~~i~~~~~sp~~~~  272 (432)
                      .+..+.+.+..+.+++.+  .+++.+.-.|.....+..+.-+.         .....|+..++|.+
T Consensus       234 DvSgl~~~~~~~~LLVLS--~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l  297 (316)
T COG3204         234 DVSGLEFNAITNSLLVLS--DESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL  297 (316)
T ss_pred             ccccceecCCCCcEEEEe--cCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence            456678888777777664  47788877887776544332221         12345666666653

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.34  E-value=0.066  Score=44.19  Aligned_cols=202  Identities=12%  Similarity=0.122  Sum_probs=113.1

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEeecccCc-ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC--CCceeEEee
Q 014007           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGG-GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS  173 (432)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~--~~~~~~~~~  173 (432)
                      .+|.+-- .+.|.-||+...+ .+...++... ...+.-+.-.++...+..|..      -.|--||..  .....+++.
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~-v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~k------f~i~nwd~~~~~a~v~~t~~  100 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNK-VYRAKIEGPPSAGFILPVEGGPQEFAVGCGSK------FVIVNWDGVSESAKVYRTLF  100 (310)
T ss_pred             eEEEEEeccCceehhhhhhhh-eEEEEEecCcceeEEEEecCCCceEEEeecce------EEEEEcccccceeeeeeecc
Confidence            3444444 3447779987644 3333443111 111222222233333333332      355667732  223333321


Q ss_pred             ------cCCceEEEEEecCccEEEe------------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007          174 ------FRSEVRSVKLRRDRIIVVL------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       174 ------~~~~v~~~~~~~~~~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                            .....+.-..+|+|++.+.            .|.++.|-..  ..+..+...-.--+.++|+.+.+.++++  .
T Consensus       101 ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~i--D  176 (310)
T KOG4499|consen  101 EVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYI--D  176 (310)
T ss_pred             ccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEE--c
Confidence                  2445667778899998661            3556666542  2222232222333467888887777765  3


Q ss_pred             CCCCcEEEEEcc--CCce------eeeec----cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc
Q 014007          236 LQKGQVRVEHYA--SKRT------KFIMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (432)
Q Consensus       236 ~~d~~i~i~d~~--~~~~------~~~~~----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~  303 (432)
                      +.+-.|.-||.+  ++.+      ..++.    ..-..-.+++..+|++.++.-..++ |..+|..+|+.+.++...  .
T Consensus       177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eiklP--t  253 (310)
T KOG4499|consen  177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKLP--T  253 (310)
T ss_pred             cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEcC--C
Confidence            567788778844  3221      11111    1112334566778888888888888 999999999999999964  4


Q ss_pred             CceEEEEECC
Q 014007          304 AEIYSLAFSS  313 (432)
Q Consensus       304 ~~i~~~~~s~  313 (432)
                      ..|++++|--
T Consensus       254 ~qitsccFgG  263 (310)
T KOG4499|consen  254 PQITSCCFGG  263 (310)
T ss_pred             CceEEEEecC
Confidence            6899999954

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.28  E-value=0.24  Score=49.51  Aligned_cols=226  Identities=13%  Similarity=0.189  Sum_probs=136.9

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC-CC--------CCCCCCeEEEEeCCCCcee
Q 014007           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PD--------PQYPLNKVMIWDDHQSRCI  169 (432)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d--------~~~~~~~v~iwd~~~~~~~  169 (432)
                      .|+.+..+.+++..++.-+....+++.  -......+++.+..+.+...+ +.        +.+.-..++++|-++-+.+
T Consensus       686 ~l~~~~~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl  763 (1096)
T KOG1897|consen  686 SLASANGGALTIGTIDEIQKLHIRTVP--LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL  763 (1096)
T ss_pred             eEEEecCCceEEEEecchhhcceeeec--CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence            566676777888888776665555554  344455666666433333222 11        1122245788887776665


Q ss_pred             EEee--cCC---ceEEEEEecC-ccEEEe-------------CCeEEEEEcCCCeeeEEEeeccCCcceEEEe-cCCCcE
Q 014007          170 GELS--FRS---EVRSVKLRRD-RIIVVL-------------EQKIFVYNFADLKLLHQIETIANPKGLCAVS-QGVGSL  229 (432)
Q Consensus       170 ~~~~--~~~---~v~~~~~~~~-~~~~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  229 (432)
                      ...+  ...   .|.+..|..| +.+++.             .|.|.+|....++.++.+..+.-.-...++. .+|+  
T Consensus       764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngk--  841 (1096)
T KOG1897|consen  764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGK--  841 (1096)
T ss_pred             eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCe--
Confidence            5544  223   3444557776 554441             5788898887744444432221111122332 2332  


Q ss_pred             EEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC--CCceEEEEEeCCCcCce
Q 014007          230 VLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DGTLLQEVRRGADRAEI  306 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~--~~~~~~~~~~~~~~~~i  306 (432)
                      ++|.   -+..|++|++..+ +++.-..+..++..+...-.|..+++|..-+. +.+.-.+  .|... .+...-++.++
T Consensus       842 llA~---In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~eg~f~-evArD~~p~Wm  916 (1096)
T KOG1897|consen  842 LLAG---INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGDEGNFE-EVARDYNPNWM  916 (1096)
T ss_pred             EEEe---cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEeccCCceE-EeehhhCccce
Confidence            4444   5689999999986 55555678888999999889999999998887 7665444  33343 33333366788


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       307 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      +++.+-.+. .++.+..+|.+++-..++
T Consensus       917 taveil~~d-~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  917 TAVEILDDD-TYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             eeEEEecCc-eEEeecccccEEEEEecC
Confidence            888886544 455666788888776654

>PRK10115 protease 2; Provisional

Probab=97.27  E-value=0.25  Score=49.55  Aligned_cols=241  Identities=10%  Similarity=0.046  Sum_probs=123.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-c-----EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC-CCCCeE
Q 014007           86 PTLLHISFNQDHGCFAAGTDH-G-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ-YPLNKV  158 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~~~-~-----i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~-~~~~~v  158 (432)
                      -.+..+.++|||++|+.+.|. |     |++.++.++... ...+.  .. . ..+.|.+++..|+-...++. ..+..|
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~--~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLD--NV-E-PSFVWANDSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-Ccccc--Cc-c-eEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence            347778999999999887632 2     777888766422 12222  11 1 34778776644333222211 122689


Q ss_pred             EEEeCCCC--ceeEEee-cCCceE-EEEEecCccEEEe------CCeEEEEEcC--CCeeeEEEeeccCCcceEEEecCC
Q 014007          159 MIWDDHQS--RCIGELS-FRSEVR-SVKLRRDRIIVVL------EQKIFVYNFA--DLKLLHQIETIANPKGLCAVSQGV  226 (432)
Q Consensus       159 ~iwd~~~~--~~~~~~~-~~~~v~-~~~~~~~~~~~~~------d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~  226 (432)
                      +.+++.++  +-...+. ...... .+..+.++.+++.      ++.+.+++..  ++.....+ .....+. ..+...+
T Consensus       202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~  279 (686)
T PRK10115        202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL-PRRKDHE-YSLDHYQ  279 (686)
T ss_pred             EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE-ECCCCCE-EEEEeCC
Confidence            99999988  3334444 222233 3333447776552      5688998843  33322222 2222222 2233334


Q ss_pred             CcEEEEee-cCCCCcEEEEEccC-Cceeeeecc-C-CceeEEEEcCCCCEEEEEcCCCc-eEEEEECCCCceEEEEEeCC
Q 014007          227 GSLVLVCP-GLQKGQVRVEHYAS-KRTKFIMAH-D-SRIACFALTQDGQLLATSSTKGT-LVRIFNTLDGTLLQEVRRGA  301 (432)
Q Consensus       227 ~~~~~~~~-g~~d~~i~i~d~~~-~~~~~~~~~-~-~~i~~~~~sp~~~~l~~~~~dg~-~i~vwd~~~~~~~~~~~~~~  301 (432)
                      +.+++.+. +.....|...++.. .....+..+ . ..|..+.+. .+.++++...++. .++++|...+ .+..+... 
T Consensus       280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~-  356 (686)
T PRK10115        280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFD-  356 (686)
T ss_pred             CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCC-
Confidence            56666552 22333444445542 333455555 3 368888887 3345555555664 1445554333 34444311 


Q ss_pred             CcCceEEEEEC--CCCC-EEEEEe---CCCeEEEEEecCCC
Q 014007          302 DRAEIYSLAFS--SNAQ-WLAVSS---DKGTVHVFNLKVNS  336 (432)
Q Consensus       302 ~~~~i~~~~~s--~~~~-~l~~~~---~dg~i~iwd~~~~~  336 (432)
                      ....+..+.++  +++. ++++.+   .-+.++.+|+.+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            12233334444  3433 444433   45778888887754

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.18  E-value=0.034  Score=40.34  Aligned_cols=91  Identities=15%  Similarity=0.198  Sum_probs=59.9

Q ss_pred             EEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcce
Q 014007          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGL  219 (432)
Q Consensus       142 ~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~  219 (432)
                      ..|+.|+.|     ..|++|+  ..+.+.++...+.|..+.-...+++.+  .+|+|-+|+-  ...+..++....++..
T Consensus        16 ~eLlvGs~D-----~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~   86 (111)
T PF14783_consen   16 NELLVGSDD-----FEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSM   86 (111)
T ss_pred             ceEEEecCC-----cEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEE
Confidence            567777777     9999997  457888888888999998888887776  3899999984  3344444444444444


Q ss_pred             EEEecCCCcEE-EEeecCCCCcEE
Q 014007          220 CAVSQGVGSLV-LVCPGLQKGQVR  242 (432)
Q Consensus       220 ~~~~~~~~~~~-~~~~g~~d~~i~  242 (432)
                      ..+..+++... ++ .|-.+|.|-
T Consensus        87 ~~~D~~gdG~~eLI-~GwsnGkve  109 (111)
T PF14783_consen   87 AFYDINGDGVPELI-VGWSNGKVE  109 (111)
T ss_pred             EEEcCCCCCceEEE-EEecCCeEE
Confidence            44455443221 22 244667654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.031  Score=51.60  Aligned_cols=144  Identities=11%  Similarity=0.090  Sum_probs=88.1

Q ss_pred             cEEEEeecCCCCcEEEEEccCCceee-eeccCCceeEEEEcCCCCE-------EEEEcCCCceEEEEECCCCc--eEEEE
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQL-------LATSSTKGTLVRIFNTLDGT--LLQEV  297 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~-------l~~~~~dg~~i~vwd~~~~~--~~~~~  297 (432)
                      .+++. .|.....++-.|+..+++.. +.-+. .|.-+.+.|+.+.       -+.|-.|.. |.-||.+-..  .+...
T Consensus       346 nlil~-~~~~~~~l~klDIE~GKIVeEWk~~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~-vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  346 NLILM-DGGEQDKLYKLDIERGKIVEEWKFED-DINMVDITPDFKFAQLTSEQTLVGLSDNS-VFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ceEee-CCCCcCcceeeecccceeeeEeeccC-CcceeeccCCcchhcccccccEEeecCCc-eEEecccccCcceeeee
Confidence            34444 34466777778888766554 44444 3777888886532       134555666 8999987322  22222


Q ss_pred             EeC--CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEE
Q 014007          298 RRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ  375 (432)
Q Consensus       298 ~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (432)
                      ..+  .......|.+-..+| ++++|+.+|.|++||- .++..++                                  .
T Consensus       423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKT----------------------------------A  466 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKT----------------------------------A  466 (644)
T ss_pred             eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhh----------------------------------c
Confidence            211  111334555555454 7899999999999998 4442221                                  1


Q ss_pred             EEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          376 FRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       376 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +.+-...|..|..+.||++|+..| +.++.+-+...
T Consensus       467 lPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~  501 (644)
T KOG2395|consen  467 LPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTLI  501 (644)
T ss_pred             ccccCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence            334445788999999999998666 55666655544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.06  E-value=0.24  Score=45.37  Aligned_cols=189  Identities=13%  Similarity=0.143  Sum_probs=86.7

Q ss_pred             eEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEee----cC----CceEEEEEecCccEEEe---------CCeEEEE
Q 014007          141 ILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS----FR----SEVRSVKLRRDRIIVVL---------EQKIFVY  199 (432)
Q Consensus       141 ~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~~----~~----~~v~~~~~~~~~~~~~~---------d~~i~i~  199 (432)
                      ..+++.+-..     +.|+|.|+.+.    +..+.++    +.    .....+..-|+|.++++         -|.+.++
T Consensus        88 r~Li~PgL~S-----srIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll  162 (461)
T PF05694_consen   88 RYLILPGLRS-----SRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL  162 (461)
T ss_dssp             -EEEEEBTTT-------EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred             CcEEeeeecc-----CcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence            4455556565     89999998853    3444443    11    22334455578866663         2468888


Q ss_pred             EcCCCeeeEEEeeccCC---cceEEEecCCCcEEEEee-------------------cCCCCcEEEEEccCCceee-eec
Q 014007          200 NFADLKLLHQIETIANP---KGLCAVSQGVGSLVLVCP-------------------GLQKGQVRVEHYASKRTKF-IMA  256 (432)
Q Consensus       200 d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------------------g~~d~~i~i~d~~~~~~~~-~~~  256 (432)
                      |-++.+.....+.....   -..+.+.|..+  +++++                   +.....+.+||+...+... +.-
T Consensus       163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             -TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred             cCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence            98877777666543321   12345555443  23332                   1124789999999966554 332


Q ss_pred             c-C-CceeEEEEcC--CCCE-EEEEcCCCceEEEEEC-CCCc----eEEEEEeCCC---------------cCceEEEEE
Q 014007          257 H-D-SRIACFALTQ--DGQL-LATSSTKGTLVRIFNT-LDGT----LLQEVRRGAD---------------RAEIYSLAF  311 (432)
Q Consensus       257 ~-~-~~i~~~~~sp--~~~~-l~~~~~dg~~i~vwd~-~~~~----~~~~~~~~~~---------------~~~i~~~~~  311 (432)
                      - + .....|.|..  +..+ ++.+...++ |..|-- ..++    .+..+.....               ..-|+.|..
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i  319 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI  319 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence            1 2 3456777754  3333 333334455 555432 3332    2222221100               234799999


Q ss_pred             CCCCCEEEEEe-CCCeEEEEEecCCCC
Q 014007          312 SSNAQWLAVSS-DKGTVHVFNLKVNSG  337 (432)
Q Consensus       312 s~~~~~l~~~~-~dg~i~iwd~~~~~~  337 (432)
                      |.|.++|...+ .+|.|+.||+.....
T Consensus       320 SlDDrfLYvs~W~~GdvrqYDISDP~~  346 (461)
T PF05694_consen  320 SLDDRFLYVSNWLHGDVRQYDISDPFN  346 (461)
T ss_dssp             -TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred             ccCCCEEEEEcccCCcEEEEecCCCCC
Confidence            99999998777 799999999998763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.01  E-value=0.45  Score=47.72  Aligned_cols=278  Identities=12%  Similarity=0.124  Sum_probs=135.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEE--EcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEE
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHG-FRIY--NCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~i  160 (432)
                      +..|.-..|-.|+.+|.++..+| +.-|  |..++...-.+... -+..++.=-.|+.. ..++.++++      .-..+
T Consensus       583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~-lGt~P~~Lr~f~sk~~t~vfa~sd------rP~vi  655 (1096)
T KOG1897|consen  583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT-LGTQPISLRTFSSKSRTAVFALSD------RPTVI  655 (1096)
T ss_pred             chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccc-cCCCCcEEEEEeeCCceEEEEeCC------CCEEE
Confidence            45666667777788888888666 4444  44444433222111 12233333334332 334444433      33444


Q ss_pred             EeCCCCceeEEeecCCceEEE-EEe----cCccEEEeCCeEEEEEcCCCee--eEEEeeccCCcceEEEecCCCcEEEEe
Q 014007          161 WDDHQSRCIGELSFRSEVRSV-KLR----RDRIIVVLEQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       161 wd~~~~~~~~~~~~~~~v~~~-~~~----~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      |. .+++.+..--.-..+..+ .|+    ||+...+..+.+++..+..-+.  ++++..+. ..+.+++.+... .+.+.
T Consensus       656 Y~-~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~-~prrI~~q~~sl-~~~v~  732 (1096)
T KOG1897|consen  656 YS-SNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGE-SPRRICYQESSL-TFGVL  732 (1096)
T ss_pred             Ee-cCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCC-ChhheEecccce-EEEEE
Confidence            44 233332221111111111 122    3445555677788777665322  22332222 233455555222 22222


Q ss_pred             ecC---------CC---CcEEEEEccCCceeeeeccC-------CceeEEEEcCC-CCEEEEEcC----------CCceE
Q 014007          234 PGL---------QK---GQVRVEHYASKRTKFIMAHD-------SRIACFALTQD-GQLLATSST----------KGTLV  283 (432)
Q Consensus       234 ~g~---------~d---~~i~i~d~~~~~~~~~~~~~-------~~i~~~~~sp~-~~~l~~~~~----------dg~~i  283 (432)
                      +..         ..   ..++++|-++-+  .+..|+       ..|.++.|..| +.++++|..          .|. |
T Consensus       733 s~r~e~~~~~~~ee~~~s~l~vlD~nTf~--vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR-I  809 (1096)
T KOG1897|consen  733 SNRIESSAEYYGEEYEVSFLRVLDQNTFE--VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR-I  809 (1096)
T ss_pred             ecccccchhhcCCcceEEEEEEecCCcee--EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce-E
Confidence            110         11   234455544422  222222       23555668777 677777753          466 8


Q ss_pred             EEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (432)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                      .+|.+..++.++......-++.+.++.- -+|++||.-  ...|++|+..+.+.+...                      
T Consensus       810 ivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e----------------------  864 (1096)
T KOG1897|consen  810 IVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIE----------------------  864 (1096)
T ss_pred             EEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhh----------------------
Confidence            8888877544444433223455666543 267777655  568999999988643321                      


Q ss_pred             cceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCC
Q 014007          364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVN  413 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~  413 (432)
                                   ..+...+.++...-.|..+++|.-=+++.+..+...+
T Consensus       865 -------------~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  865 -------------CNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             -------------hcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence                         1223345555555566666666666666555554443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.00  E-value=0.16  Score=46.91  Aligned_cols=194  Identities=18%  Similarity=0.246  Sum_probs=98.4

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeeccc-----CcceeEEEEeee-----CC---eEEE
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFER-----GGGIGVVEMLFR-----CN---ILAL  144 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~-----~~---~~~~  144 (432)
                      .......+.|++++.|. =-++|+|.++| +.|.|+.....++...+..     .....+.++.|.     .|   ...+
T Consensus        80 ~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             EEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             hheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            45556689999999984 45899999666 9999998777777655542     234456666664     22   3566


Q ss_pred             ecCCCCCCCCCCeEEEEeCC--C-Cc----eeEEe-ecCCceEEEE-EecC----------------------ccEEE-e
Q 014007          145 VGGGPDPQYPLNKVMIWDDH--Q-SR----CIGEL-SFRSEVRSVK-LRRD----------------------RIIVV-L  192 (432)
Q Consensus       145 ~s~~~d~~~~~~~v~iwd~~--~-~~----~~~~~-~~~~~v~~~~-~~~~----------------------~~~~~-~  192 (432)
                      ..|...     |.+.+|.+.  . +.    ..... .+.++|..+. ++.+                      +.+++ +
T Consensus       159 ~vGTn~-----G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  159 LVGTNS-----GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEETT-----SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             EEEeCC-----CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence            666666     999999764  1 21    12222 2556666665 3322                      12222 5


Q ss_pred             CCeEEEEEcCCCeeeEEEeeccCCcceEEEec---CCCcEEEEeecCCCCcEEEEEccC-Cceeeeecc----CCceeEE
Q 014007          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ---GVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH----DSRIACF  264 (432)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~----~~~i~~~  264 (432)
                      +..++++...+.+..+......-....+.+.+   ......+++- ..+|.+++|.+.. +.+..+.-.    ...+...
T Consensus       234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l-~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCL-FNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEE-ETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEE-ECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            88999999888776655432111222333421   1122223321 3789999999987 444443322    2234456


Q ss_pred             EEcCCCCEEEEEcCC
Q 014007          265 ALTQDGQLLATSSTK  279 (432)
Q Consensus       265 ~~sp~~~~l~~~~~d  279 (432)
                      .++++|..++-.+..
T Consensus       313 sis~~Gdi~~~~gps  327 (395)
T PF08596_consen  313 SISRNGDIFYWTGPS  327 (395)
T ss_dssp             EE-TTS-EEEE-SSS
T ss_pred             EECCCCCEEEEeCcc
Confidence            667788766555443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.91  E-value=0.0032  Score=37.98  Aligned_cols=31  Identities=6%  Similarity=0.071  Sum_probs=28.2

Q ss_pred             CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          381 GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       381 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      ..|..++|+|...+||.++.||.|.+|+++-
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            4689999999999999999999999999843

>PHA02713 hypothetical protein; Provisional

Probab=96.90  E-value=0.37  Score=47.18  Aligned_cols=219  Identities=11%  Similarity=0.075  Sum_probs=101.6

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE--EeecCCceEEEEEec
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG--ELSFRSEVRSVKLRR  185 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~  185 (432)
                      +..||..+.+-.....+.  ....-.+.+...+..++++|..........+..||..++.-..  .+.....-.+++...
T Consensus       274 v~~yd~~~~~W~~l~~mp--~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~  351 (557)
T PHA02713        274 ILVYNINTMEYSVISTIP--NHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID  351 (557)
T ss_pred             EEEEeCCCCeEEECCCCC--ccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence            667887665544333332  1111123333445555555532111112568889987764221  111111112233333


Q ss_pred             CccEEEe--C-----CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCC---------------------
Q 014007          186 DRIIVVL--E-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ---------------------  237 (432)
Q Consensus       186 ~~~~~~~--d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------------------  237 (432)
                      +..+++.  +     ..+..||..+.+-.. +.....+....+...-++.++++ +|..                     
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~~r~~~~~~~~~g~IYvi-GG~~~~~~~~~~~~~~~~~~~~~~~  429 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPIALSSYGMCVLDQYIYII-GGRTEHIDYTSVHHMNSIDMEEDTH  429 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCcccccccEEEECCEEEEE-eCCCccccccccccccccccccccc
Confidence            3333332  2     248889987653221 11111111111222223455544 3422                     


Q ss_pred             -CCcEEEEEccCCceeeeecc-CCce-eEEEEcCCCCEEEEEcCCC------ceEEEEECCC-Cce--EEEEEeCCCcCc
Q 014007          238 -KGQVRVEHYASKRTKFIMAH-DSRI-ACFALTQDGQLLATSSTKG------TLVRIFNTLD-GTL--LQEVRRGADRAE  305 (432)
Q Consensus       238 -d~~i~i~d~~~~~~~~~~~~-~~~i-~~~~~sp~~~~l~~~~~dg------~~i~vwd~~~-~~~--~~~~~~~~~~~~  305 (432)
                       -..+..||..+..-..+... .... .+++ .-+|++.+.|+.++      . +..||..+ .+-  +..+..  ....
T Consensus       430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~-ve~Ydp~~~~~W~~~~~m~~--~r~~  505 (557)
T PHA02713        430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTC-IFRYNTNTYNGWELITTTES--RLSA  505 (557)
T ss_pred             ccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCcccee-EEEecCCCCCCeeEccccCc--cccc
Confidence             13466788776443322211 1111 1122 22677777777542      3 67899876 333  222221  1122


Q ss_pred             eEEEEECCCCCEEEEEeCCC--eEEEEEecCCC
Q 014007          306 IYSLAFSSNAQWLAVSSDKG--TVHVFNLKVNS  336 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~  336 (432)
                      ...+.+  +|+..++|+.+|  .+..||..+.+
T Consensus       506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             ceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            222233  788889999888  78888888876

>PRK10115 protease 2; Provisional

Probab=96.73  E-value=0.78  Score=46.18  Aligned_cols=203  Identities=7%  Similarity=-0.057  Sum_probs=106.1

Q ss_pred             ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe----C-----CeEEEE
Q 014007          129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----E-----QKIFVY  199 (432)
Q Consensus       129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d-----~~i~i~  199 (432)
                      ...+..+.++|++..++-+.+........|++.|+.+|+.+...-.... ..++|.+|+..++.    +     ..|+.+
T Consensus       126 ~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        126 FYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             cEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            3556677889998776643222111125699999988864322211111 56899998876552    1     368888


Q ss_pred             EcCCC--eeeEEEeeccCCcceEEE-ecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEE
Q 014007          200 NFADL--KLLHQIETIANPKGLCAV-SQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLA  274 (432)
Q Consensus       200 d~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~  274 (432)
                      ++.++  +....+...........+ +.+++.+++.+....++.+.+++...  .....+..+...+..-..+..+.+++
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~  284 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYL  284 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEE
Confidence            88887  333334433333332233 34777777666666778899998532  33233333333222211233333333


Q ss_pred             EEcCCC-c-eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          275 TSSTKG-T-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       275 ~~~~dg-~-~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      ....++ . .|...++.+......+..+.....+..+.+. .+.++++...+|.-+++-+.
T Consensus       285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            333222 2 0433444421222333322122468888887 33555666677776666554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.70  E-value=0.0035  Score=51.26  Aligned_cols=136  Identities=14%  Similarity=0.097  Sum_probs=75.9

Q ss_pred             CCCCcEEEEEccCCcee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEEC
Q 014007          236 LQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFS  312 (432)
Q Consensus       236 ~~d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s  312 (432)
                      +.+|.|.-++++..+..  ...-|...   .....-+..+++|+.+|. |++|..... .....+... .+.....+.-.
T Consensus        37 sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~-v~~~n~n~~g~~~d~~~s~-~e~i~~~Ip~~  111 (238)
T KOG2444|consen   37 SADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGA-VYVFNWNLEGAHSDRVCSG-EESIDLGIPNG  111 (238)
T ss_pred             cCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccce-EEEecCCccchHHHhhhcc-cccceeccccc
Confidence            46788877777653221  11112222   111223567899999999 999986521 111111111 11222333333


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC-CCceEEEEccC
Q 014007          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGHQ  391 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~  391 (432)
                      .++.+.++++.||.|+.|++.-.+.+.                                   ....|. ..+.....+..
T Consensus       112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g-----------------------------------~~g~h~~~~~e~~ivv~s  156 (238)
T KOG2444|consen  112 RDSSLGCVGAQDGRIRACNIKPNKVLG-----------------------------------YVGQHNFESGEELIVVGS  156 (238)
T ss_pred             cccceeEEeccCCceeeeccccCceee-----------------------------------eeccccCCCcceeEEecC
Confidence            455678889999999999998776321                                   122233 33444445555


Q ss_pred             CCEEEEE--ecCCeEEEEEecC
Q 014007          392 KNTVVIL--GMDGSFYRCQFDP  411 (432)
Q Consensus       392 ~~~l~~~--~~dg~v~iw~~~~  411 (432)
                      +++|+++  +.|..++.|++..
T Consensus       157 d~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  157 DEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CceEEeeccccchhhhhcchhh
Confidence            6666666  6777777777654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.66  E-value=0.0071  Score=36.47  Aligned_cols=34  Identities=21%  Similarity=0.410  Sum_probs=30.1

Q ss_pred             CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce
Q 014007          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~  293 (432)
                      ...|.+++|+|...+||.++.+|. |.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcC
Confidence            456999999999999999999999 999998 5554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.64  E-value=0.37  Score=41.28  Aligned_cols=190  Identities=12%  Similarity=0.142  Sum_probs=114.5

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCc--eEEEEEecCccEEEe--CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSE--VRSVKLRRDRIIVVL--EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~--d~~i~  197 (432)
                      ..++.....-.-.+.|..++.++-+.+..   ....|+.+|+.+++.+........  -.+++...|..+..+  ++...
T Consensus        37 ~~ypHd~~aFTQGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   37 ETYPHDPTAFTQGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEE--TT-EEEEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred             EECCCCCcccCccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence            44442233444567775666666555543   224799999999998877774333  345666667666664  89999


Q ss_pred             EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cceeeee--ccC---CceeEEEEcCCCC
Q 014007          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIM--AHD---SRIACFALTQDGQ  271 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~--~~~---~~i~~~~~sp~~~  271 (432)
                      +||..+.+.+.++.-.. .  ..-+..+++.+++ +.|  ...++++|..+ .....+.  ...   ..++.+.|- +|.
T Consensus       114 ~yd~~tl~~~~~~~y~~-E--GWGLt~dg~~Li~-SDG--S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~  186 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYPG-E--GWGLTSDGKRLIM-SDG--SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK  186 (264)
T ss_dssp             EEETTTTEEEEEEE-SS-S----EEEECSSCEEE-E-S--SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred             EEccccceEEEEEecCC-c--ceEEEcCCCEEEE-ECC--ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence            99999998888876432 2  2334467776654 323  46788888766 2222222  222   245566665 676


Q ss_pred             EEEEEcCCCceEEEEECCCCceEEEEEeCC-------------CcCceEEEEECCCCCEEEEEe
Q 014007          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-------------DRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       272 ~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      +.|=.=.... |...|..+|+.+..+....             ...-.+.|++.|....|...+
T Consensus       187 IyANVW~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  187 IYANVWQTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            6665555666 8888999999988875310             124589999988766555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.014  Score=58.35  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       269 ~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      .+-.++.|+..|. |-.+|+... +-.-..+....++|++++|+.+|+.++.|-.+|.|.+||+.+++.++
T Consensus        98 ~~~~ivi~Ts~gh-vl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~  166 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGH-VLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK  166 (1206)
T ss_pred             eeeeEEEEcCchh-hhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee
Confidence            4557888888888 888887543 11112222234789999999999999999999999999999987543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.34  E-value=0.19  Score=46.56  Aligned_cols=139  Identities=12%  Similarity=0.211  Sum_probs=86.3

Q ss_pred             CccEEEeCC----eEEEEEcCCCeeeEEEeeccCCcceEEEecCCC-------cEEEEeecCCCCcEEEEEccC--Ccee
Q 014007          186 DRIIVVLEQ----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-------SLVLVCPGLQKGQVRVEHYAS--KRTK  252 (432)
Q Consensus       186 ~~~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~d~~i~i~d~~~--~~~~  252 (432)
                      +..++..||    .++-.|++.|+.+..+..+...  .+.+.|..+       ..++   |-.+..|.-.|.+.  .++.
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv---GlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV---GLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE---eecccceEEecccccCCcee
Confidence            445555443    6888899999999998876654  567776542       2222   22456665566554  2222


Q ss_pred             eeeccCCceeEEEEcC----CCCEEEEEcCCCceEEEEECCCCceEE-EEEeCCCcCceEEEEECCCCCEEEEEeCCCeE
Q 014007          253 FIMAHDSRIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQ-EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (432)
Q Consensus       253 ~~~~~~~~i~~~~~sp----~~~~l~~~~~dg~~i~vwd~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  327 (432)
                      . ......++.-.|+.    ...++|+++..|. |++||- -|..-+ .+.+  ....|..+..+.+|+++++.+ ...+
T Consensus       553 v-~esKdY~tKn~Fss~~tTesGyIa~as~kGD-irLyDR-ig~rAKtalP~--lG~aIk~idvta~Gk~ilaTC-k~yl  626 (776)
T COG5167         553 V-VESKDYKTKNKFSSGMTTESGYIAAASRKGD-IRLYDR-IGKRAKTALPG--LGDAIKHIDVTANGKHILATC-KNYL  626 (776)
T ss_pred             e-eeehhccccccccccccccCceEEEecCCCc-eeeehh-hcchhhhcCcc--cccceeeeEeecCCcEEEEee-cceE
Confidence            2 11222223223332    3458999999999 999994 443332 3332  336899999999999988776 4568


Q ss_pred             EEEEecCC
Q 014007          328 HVFNLKVN  335 (432)
Q Consensus       328 ~iwd~~~~  335 (432)
                      .+-|+.-.
T Consensus       627 lL~d~~ik  634 (776)
T COG5167         627 LLTDVPIK  634 (776)
T ss_pred             EEEecccc
Confidence            88887643

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.11  E-value=1.3  Score=43.47  Aligned_cols=191  Identities=15%  Similarity=0.143  Sum_probs=98.5

Q ss_pred             eEEEecCCCCC-CCCCCeEEEEeCCCCceeEE--eecCCceEEEEEecCccEEE--eC------CeEEEEEcCCCeeeEE
Q 014007          141 ILALVGGGPDP-QYPLNKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVV--LE------QKIFVYNFADLKLLHQ  209 (432)
Q Consensus       141 ~~~~~s~~~d~-~~~~~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~--~d------~~i~i~d~~~~~~~~~  209 (432)
                      +..++.|+..+ ......+..||..+++-...  +.....-.+++...+..+++  .|      ..+..||..+.+-.. 
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence            34444555442 12236788999887743332  23444456666666655655  24      368888887765322 


Q ss_pred             EeeccCCcceEEEecCCCcEEEEeecCCCC-----cEEEEEccCCceeeeeccCCceeEEEE-cCCCCEEEEEcCCCce-
Q 014007          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKG-----QVRVEHYASKRTKFIMAHDSRIACFAL-TQDGQLLATSSTKGTL-  282 (432)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-----~i~i~d~~~~~~~~~~~~~~~i~~~~~-sp~~~~l~~~~~dg~~-  282 (432)
                      +..-..+-.......-++.+++ .+| .||     .+..||..+..-............... .-+|++.++|+.++.. 
T Consensus       364 ~a~M~~~R~~~~v~~l~g~iYa-vGG-~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~  441 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAVLDGKLYA-VGG-FDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN  441 (571)
T ss_pred             cCCccCccccceeEEECCEEEE-Eec-cccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence            2111222223444444444443 334 554     466677776543333222222222211 2278888888866541 


Q ss_pred             ----EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC-----eEEEEEecCCC
Q 014007          283 ----VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG-----TVHVFNLKVNS  336 (432)
Q Consensus       283 ----i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~  336 (432)
                          +..||..+.+....-.......... ++. -++.+.+.|+.|+     +|..||..+.+
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence                6778877765432221111111112 222 3677888888776     36667777665

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.38  Score=39.17  Aligned_cols=105  Identities=10%  Similarity=0.091  Sum_probs=65.4

Q ss_pred             CCCEEEEEc--CC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe
Q 014007           96 DHGCFAAGT--DH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (432)
Q Consensus        96 ~~~~l~~~~--~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~  172 (432)
                      +|.++.+.+  .. .|++|++.+++......+. ....---.+.-..+..+..+...      |.-..+|..+-+++..+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~t~~~lg~~  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKE------GVAFKYDADTLEELGRF  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEecc------ceeEEEChHHhhhhccc
Confidence            445555544  22 2999999998888766664 11211122333455666666554      88899999999999988


Q ss_pred             ecCCceEEEEEecCccEEEeCC--eEEEEEcCCCeeeE
Q 014007          173 SFRSEVRSVKLRRDRIIVVLEQ--KIFVYNFADLKLLH  208 (432)
Q Consensus       173 ~~~~~v~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~  208 (432)
                      ...+.=+.++..... ++.+||  +++.-|.++.....
T Consensus       128 ~y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~~  164 (262)
T COG3823         128 SYEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAELD  164 (262)
T ss_pred             ccCCcceeeecCCcc-eEeeCCceEEEecCHHHhhhcc
Confidence            877777777654333 444566  45555665544333

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.07  E-value=1.6  Score=42.76  Aligned_cols=234  Identities=14%  Similarity=0.120  Sum_probs=117.1

Q ss_pred             cCCCCEEEEEc-CC------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCC-CCCCCCeEEEEeCCC
Q 014007           94 NQDHGCFAAGT-DH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD-PQYPLNKVMIWDDHQ  165 (432)
Q Consensus        94 s~~~~~l~~~~-~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-~~~~~~~v~iwd~~~  165 (432)
                      +..+.++++|+ .+      .+..||..+........+.  ......+++...+..++ .|+.+ .......+..||..+
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~--~~r~~~~~~~~~~~lYv-~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP--SPRCRVGVAVLNGKLYV-VGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC--cccccccEEEECCEEEE-EccccCCCcccceEEEecCCC
Confidence            33455666766 32      2778887766555444443  33444555555554444 44444 344447899999887


Q ss_pred             CceeEEee--cCCceEEEEEecCccEEE--eCC-----eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecC
Q 014007          166 SRCIGELS--FRSEVRSVKLRRDRIIVV--LEQ-----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (432)
Q Consensus       166 ~~~~~~~~--~~~~v~~~~~~~~~~~~~--~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (432)
                      ++-...-.  ....-.+++....-.+++  .||     .+..||..+.+--..- .............-+..++++ +|.
T Consensus       359 ~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~-GG~  436 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYII-GGG  436 (571)
T ss_pred             CceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEEE-cCc
Confidence            76322111  111112222222333333  132     5888887764321111 111123334444444555544 331


Q ss_pred             C-----CCcEEEEEccCCceeeeec---cCCceeEEEEcCCCCEEEEEcCCCc----eEEEEECCCCceEEEEEeCCCcC
Q 014007          237 Q-----KGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGADRA  304 (432)
Q Consensus       237 ~-----d~~i~i~d~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~dg~----~i~vwd~~~~~~~~~~~~~~~~~  304 (432)
                      .     -..+..||..++.-.....   -........  -++.+.+.|+.|+.    .|..||..+.+-...-.......
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs  514 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS  514 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence            1     1456778877754333221   111111222  27778888887762    16778887765543321111112


Q ss_pred             ceEEEEECCCCCEEEEEeCCC-----eEEEEEecCCC
Q 014007          305 EIYSLAFSSNAQWLAVSSDKG-----TVHVFNLKVNS  336 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~  336 (432)
                      .+....+  +++..++|+.||     +|..||..+.+
T Consensus       515 ~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  515 AVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence            2222222  667778888776     46777766655

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.99  E-value=0.014  Score=57.24  Aligned_cols=163  Identities=16%  Similarity=0.232  Sum_probs=90.0

Q ss_pred             cCCceEEEEEecCc--cEEEeCCeEEEEEcC--CCeeeEEE-----eeccCCcceEEEecCCCcEEEEeecCCCCcEEEE
Q 014007          174 FRSEVRSVKLRRDR--IIVVLEQKIFVYNFA--DLKLLHQI-----ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (432)
Q Consensus       174 ~~~~v~~~~~~~~~--~~~~~d~~i~i~d~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~  244 (432)
                      +.+.+..+.|....  +....-|.+.+||+.  .|+....+     .........+.|.|---.-..+|.+..++.+++.
T Consensus       131 f~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL  210 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLL  210 (1283)
T ss_pred             CCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEe
Confidence            45666666664311  111223556666654  24332222     2222333455555532222345567788999998


Q ss_pred             EccCCceeeeeccCCceeEEE-----------EcCCCCEEEEEcCCCceEEEEEC-----CCCceEEEEEeCCCcCceEE
Q 014007          245 HYASKRTKFIMAHDSRIACFA-----------LTQDGQLLATSSTKGTLVRIFNT-----LDGTLLQEVRRGADRAEIYS  308 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~i~~~~-----------~sp~~~~l~~~~~dg~~i~vwd~-----~~~~~~~~~~~~~~~~~i~~  308 (432)
                      .++......+..|..++..++           .+|||..++.++.||. +++|.+     ...+|++..+.|.....+..
T Consensus       211 ~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~g~~~~rclhewkphd~~p~vC~  289 (1283)
T KOG1916|consen  211 NINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYITGKIVHRCLHEWKPHDKHPRVCW  289 (1283)
T ss_pred             eechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeeeccccHhhhhccCCCCCCCceee
Confidence            887755555666776655543           5899999999999998 777754     34456666664321122333


Q ss_pred             EEECCCC---------CEEEEEe-CCCeEEEEEecCCCCC
Q 014007          309 LAFSSNA---------QWLAVSS-DKGTVHVFNLKVNSGS  338 (432)
Q Consensus       309 ~~~s~~~---------~~l~~~~-~dg~i~iwd~~~~~~~  338 (432)
                      + ++.+.         .++++++ .+..+++|.....+++
T Consensus       290 l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  290 L-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             e-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            3 33221         1344444 3456888877766643

>PHA02713 hypothetical protein; Provisional

Probab=95.94  E-value=1.4  Score=43.24  Aligned_cols=119  Identities=8%  Similarity=0.105  Sum_probs=52.9

Q ss_pred             CeEEEEeCCCCceeE--EeecCCceEEEEEecCccEEEe--C------CeEEEEEcCCCeeeEEEeeccCCcceEEEecC
Q 014007          156 NKVMIWDDHQSRCIG--ELSFRSEVRSVKLRRDRIIVVL--E------QKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~--d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  225 (432)
                      ..+..||..+++-..  .+.....-.+++...+..+++.  +      ..+..||..+.+-. .+.....+....+...-
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE
Confidence            357788877764222  2221111123333333333331  1      24778887765432 12111112222233333


Q ss_pred             CCcEEEEeecCCC-----CcEEEEEccCCceeeeeccCC---ceeEEEEcCCCCEEEEEcCC
Q 014007          226 VGSLVLVCPGLQK-----GQVRVEHYASKRTKFIMAHDS---RIACFALTQDGQLLATSSTK  279 (432)
Q Consensus       226 ~~~~~~~~~g~~d-----~~i~i~d~~~~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~~d  279 (432)
                      ++.++++ +| .+     ..+..||..+..-..+.....   ....+.+  +|++.+.|+.+
T Consensus       351 ~g~IYvi-GG-~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~  408 (557)
T PHA02713        351 DDTIYAI-GG-QNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRT  408 (557)
T ss_pred             CCEEEEE-CC-cCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCC
Confidence            3455544 34 33     347888887754333222111   1112222  67777888765

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.84  E-value=1.4  Score=40.04  Aligned_cols=236  Identities=13%  Similarity=0.082  Sum_probs=116.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCee-EEEeec---ccCcceeEEEEeeeCC-----eEEEecCCCCCCCC--C
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE-IFRRDF---ERGGGIGVVEMLFRCN-----ILALVGGGPDPQYP--L  155 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~-~~~~~~---~~~~~~~v~~~~~~~~-----~~~~~s~~~d~~~~--~  155 (432)
                      .-+.|+|.|||++|++-..+.|++++. .+.. .....+   ..........++++|+     ..+++....+....  .
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            457899999999888766555999883 3332 211221   2245678899999983     33444332100000  0


Q ss_pred             CeEEEEeCCCC-------cee-EEeec----CCceEEEEEecCccEEEe----------------CCeEEEEEcCCCee-
Q 014007          156 NKVMIWDDHQS-------RCI-GELSF----RSEVRSVKLRRDRIIVVL----------------EQKIFVYNFADLKL-  206 (432)
Q Consensus       156 ~~v~iwd~~~~-------~~~-~~~~~----~~~v~~~~~~~~~~~~~~----------------d~~i~i~d~~~~~~-  206 (432)
                      ..|.-|....+       +.+ ..+..    ...-..|.|.|||.+.++                .|.|.-.+.. ++. 
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p  160 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP  160 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence            23444444333       111 11111    344567999999976663                1334444432 221 


Q ss_pred             ------------eEEE-eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC------------------------
Q 014007          207 ------------LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK------------------------  249 (432)
Q Consensus       207 ------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~------------------------  249 (432)
                                  ...+ .++.++ ..++|+|....++.+-.| .++.=.|..+..+                        
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN~-~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRNP-FGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SEE-EEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCCccccCCCceEEEEEeCCCcc-ccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence                        0111 122222 257888884455554433 3332222222210                        


Q ss_pred             ------ceeeeeccCCceeEEEEcC-------CCCEEEEEcCCCceEEEEECCCCceEEEEEe--CCCcCceEEEEECCC
Q 014007          250 ------RTKFIMAHDSRIACFALTQ-------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAFSSN  314 (432)
Q Consensus       250 ------~~~~~~~~~~~i~~~~~sp-------~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~  314 (432)
                            ....+ .+...+..+.|..       .|.++++.-..+. |....+.....+.....  ......+..+++.||
T Consensus       239 ~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD  316 (331)
T PF07995_consen  239 CPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGR-IWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD  316 (331)
T ss_dssp             -TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred             CCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCE-EEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence                  00112 2334566676653       4556666665566 77777765533322221  112347999999999


Q ss_pred             CCEEEEEeCCCeEE
Q 014007          315 AQWLAVSSDKGTVH  328 (432)
Q Consensus       315 ~~~l~~~~~dg~i~  328 (432)
                      |.++++...+|.|+
T Consensus       317 G~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  317 GALYVSDDSDGKIY  330 (331)
T ss_dssp             SEEEEEE-TTTTEE
T ss_pred             CeEEEEECCCCeEe
Confidence            99888887888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.74  E-value=2.7  Score=42.66  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=22.6

Q ss_pred             EEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007          394 TVVILGMDGSFYRCQFDPVNGGEMTQLEYN  423 (432)
Q Consensus       394 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  423 (432)
                      .|+.++.+|.+++  +|.++|+.+...+..
T Consensus       461 ~v~~~~K~G~~~v--lDr~tG~~l~~~~e~  488 (764)
T TIGR03074       461 ALVAPTKQGQIYV--LDRRTGEPIVPVEEV  488 (764)
T ss_pred             EEEEECCCCEEEE--EECCCCCEEeeceee
Confidence            7889999998877  777888888776654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.71  E-value=1.6  Score=39.71  Aligned_cols=228  Identities=14%  Similarity=0.168  Sum_probs=114.4

Q ss_pred             EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce---eEEee-----cCCceEEEEEecC----cc-EEEeC-----
Q 014007          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC---IGELS-----FRSEVRSVKLRRD----RI-IVVLE-----  193 (432)
Q Consensus       132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~---~~~~~-----~~~~v~~~~~~~~----~~-~~~~d-----  193 (432)
                      -+.|+|.|++.++++-- .     |.|++++ ..+..   +..+.     .......++++|+    +. +++..     
T Consensus         4 P~~~a~~pdG~l~v~e~-~-----G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~   76 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAER-S-----GRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADED   76 (331)
T ss_dssp             EEEEEEETTSCEEEEET-T-----TEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred             ceEEEEeCCCcEEEEeC-C-----ceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence            46889999998888755 5     9999999 44443   22221     3456789999994    33 33321     


Q ss_pred             -----CeEEEEEcCCC-------eee-EEEee---ccCCcceEEEecCCCcEEEEeecCC-----------CCcEEEEEc
Q 014007          194 -----QKIFVYNFADL-------KLL-HQIET---IANPKGLCAVSQGVGSLVLVCPGLQ-----------KGQVRVEHY  246 (432)
Q Consensus       194 -----~~i~i~d~~~~-------~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~-----------d~~i~i~d~  246 (432)
                           ..|.-|....+       +.+ ..+..   ..+....+.|.|+| .+++..+...           .|.|.-.+.
T Consensus        77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~  155 (331)
T PF07995_consen   77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDP  155 (331)
T ss_dssp             SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred             CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecc
Confidence                 24555554433       111 11121   22334568999998 6666543221           234444443


Q ss_pred             cCCc-------------eeee-eccCCceeEEEEcCC-CCEEEEE-cCCCc-eEEEEECCCC------------------
Q 014007          247 ASKR-------------TKFI-MAHDSRIACFALTQD-GQLLATS-STKGT-LVRIFNTLDG------------------  291 (432)
Q Consensus       247 ~~~~-------------~~~~-~~~~~~i~~~~~sp~-~~~l~~~-~~dg~-~i~vwd~~~~------------------  291 (432)
                      +...             ...+ .++. ....++|+|. |.++++= +.++. .|.+-  ..|                  
T Consensus       156 dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~  232 (331)
T PF07995_consen  156 DGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPP  232 (331)
T ss_dssp             TSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-
T ss_pred             cCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCc
Confidence            3320             0111 1222 3457899998 6655442 11221 13222  111                  


Q ss_pred             -----------ceEEEEEeCCCcCceEEEEECC-------CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007          292 -----------TLLQEVRRGADRAEIYSLAFSS-------NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT  353 (432)
Q Consensus       292 -----------~~~~~~~~~~~~~~i~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (432)
                                 .++..+.   +...+..+.|..       .|.+|++.-..+.|....++....+.              
T Consensus       233 ~~~~~~~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~--------------  295 (331)
T PF07995_consen  233 IGDAPSCPGFVPPVFAYP---PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT--------------  295 (331)
T ss_dssp             ECTGSS-TTS---SEEET---TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE--------------
T ss_pred             cccccCCCCcCccceeec---CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc--------------
Confidence                       0122222   224566677653       34456555556677777776443110              


Q ss_pred             CCceeEeecccceeecceeeEEE-EecCCCceEEEEccCCCEEEEEecCCeEE
Q 014007          354 SSLSFIKGVLPKYFSSEWSVAQF-RLVEGSPYIVAFGHQKNTVVILGMDGSFY  405 (432)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~  405 (432)
                                        ....+ ......+..+++.|||.+.++-+.+|.|+
T Consensus       296 ------------------~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  296 ------------------EEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             ------------------EEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             ------------------ceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence                              00111 12223688999999999999888899876

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.4  Score=39.03  Aligned_cols=164  Identities=10%  Similarity=0.008  Sum_probs=89.9

Q ss_pred             ceeEEeecCCce--EEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007          167 RCIGELSFRSEV--RSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (432)
Q Consensus       167 ~~~~~~~~~~~v--~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (432)
                      +.++++.|...-  ..+.+. ++.++.+     ...|++||+.+++.+..-......+..--+..-++.++..+  -.+|
T Consensus        35 evi~~yphDs~sfTQGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT--w~eg  111 (262)
T COG3823          35 EVIRTYPHDSTSFTQGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT--WKEG  111 (262)
T ss_pred             EEEEeccCchhhhhcceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE--eccc
Confidence            345555554332  233333 3444443     45899999999988766543322222222334455556554  4688


Q ss_pred             cEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---CceEEEEECCCCC
Q 014007          240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSNAQ  316 (432)
Q Consensus       240 ~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~  316 (432)
                      .-..+|.++-+...-...++.=..++  .|++.|+.++...+ ++.-|-++.....++......   ..++.+.|- ||.
T Consensus       112 vaf~~d~~t~~~lg~~~y~GeGWgLt--~d~~~LimsdGsat-L~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~  187 (262)
T COG3823         112 VAFKYDADTLEELGRFSYEGEGWGLT--SDDKNLIMSDGSAT-LQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE  187 (262)
T ss_pred             eeEEEChHHhhhhcccccCCcceeee--cCCcceEeeCCceE-EEecCHHHhhhcceEEEEECCeecccccceeee-ccE
Confidence            88888887733222122333334443  35666777766667 888887765544443321111   234455553 666


Q ss_pred             EEEEEeCCCeEEEEEecCCCC
Q 014007          317 WLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       317 ~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      ..|-.-.+..|...|.++++.
T Consensus       188 lyANVw~t~~I~rI~p~sGrV  208 (262)
T COG3823         188 LYANVWQTTRIARIDPDSGRV  208 (262)
T ss_pred             EEEeeeeecceEEEcCCCCcE
Confidence            666555566676777777763

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.53  E-value=0.047  Score=44.91  Aligned_cols=99  Identities=16%  Similarity=0.194  Sum_probs=64.1

Q ss_pred             cCCCCcEEEEEccC-Cce-eeeeccCCceeEE-EEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-CceEEEE
Q 014007          235 GLQKGQVRVEHYAS-KRT-KFIMAHDSRIACF-ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLA  310 (432)
Q Consensus       235 g~~d~~i~i~d~~~-~~~-~~~~~~~~~i~~~-~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~~~  310 (432)
                      |..+|.|.+|.... +.. .....-...|.++ .--.++.+..+++.||. ||.|++.-++.+.....  |. .++..+.
T Consensus        76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~--h~~~~~e~~i  152 (238)
T KOG2444|consen   76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQ--HNFESGEELI  152 (238)
T ss_pred             ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeeecc--ccCCCcceeE
Confidence            56899999998773 111 1111122233332 22235668889999999 99999988887765553  33 4555555


Q ss_pred             ECCCCCEEEEE--eCCCeEEEEEecCCC
Q 014007          311 FSSNAQWLAVS--SDKGTVHVFNLKVNS  336 (432)
Q Consensus       311 ~s~~~~~l~~~--~~dg~i~iwd~~~~~  336 (432)
                      .+..+++++.+  +.|..++.|++....
T Consensus       153 vv~sd~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  153 VVGSDEFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             EecCCceEEeeccccchhhhhcchhhhh
Confidence            56666777777  777788888877654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.42  E-value=0.33  Score=47.27  Aligned_cols=108  Identities=11%  Similarity=0.137  Sum_probs=75.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEee--eCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      ...-+.-|.-++.-++..++. +.|||.......+...+.  ....|.++.|  .+++..+++-+-.     +.|.+|.-
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~--~~~~I~dLDWtst~d~qsiLaVGf~-----~~v~l~~Q  103 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS--EDDPIRDLDWTSTPDGQSILAVGFP-----HHVLLYTQ  103 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec--CCCceeeceeeecCCCCEEEEEEcC-----cEEEEEEc
Confidence            334445555555555544554 999999988888777774  5666776665  5788888777776     88888853


Q ss_pred             C---------CCceeEEee---c-CCceEEEEEecCccEEE-eCCeEEEEEc
Q 014007          164 H---------QSRCIGELS---F-RSEVRSVKLRRDRIIVV-LEQKIFVYNF  201 (432)
Q Consensus       164 ~---------~~~~~~~~~---~-~~~v~~~~~~~~~~~~~-~d~~i~i~d~  201 (432)
                      .         +-..++.+.   + ..+|.+..|.++|.+++ +++.+.|+|-
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence            1         112344443   3 47899999999999987 6889999983

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.40  E-value=1.7  Score=40.08  Aligned_cols=150  Identities=11%  Similarity=0.034  Sum_probs=80.5

Q ss_pred             eeEEEEeeeCCeEEEecCCCCC------CCCCC-eEEEEeCCC--Cce--eEEee-cCCceEEEEEecCccEEEeCCeEE
Q 014007          130 IGVVEMLFRCNILALVGGGPDP------QYPLN-KVMIWDDHQ--SRC--IGELS-FRSEVRSVKLRRDRIIVVLEQKIF  197 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~------~~~~~-~v~iwd~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~~~d~~i~  197 (432)
                      .....|+|.+++.++++...+-      .-..+ .|.+++-.+  |+.  ...+. .......+++.+++.+++....|.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~   93 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDIL   93 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEE
Confidence            3456778888887777642110      00013 777776443  332  23333 344568899999995554455565


Q ss_pred             EE-EcCC-C----ee--e-EEEeec----cCCcceEEEecCCCcEEEEeecC-----------------CCCcEEEEEcc
Q 014007          198 VY-NFAD-L----KL--L-HQIETI----ANPKGLCAVSQGVGSLVLVCPGL-----------------QKGQVRVEHYA  247 (432)
Q Consensus       198 i~-d~~~-~----~~--~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~-----------------~d~~i~i~d~~  247 (432)
                      .+ |... +    +.  + ..+...    ......+++.|+|. +++..+..                 ..|.|.-++.+
T Consensus        94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            55 4321 1    21  1 112111    22355788999874 55543210                 01445556666


Q ss_pred             CCceeeeeccCCceeEEEEcCCCCEEEEEcCCC
Q 014007          248 SKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (432)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg  280 (432)
                      +.....+...-.....++|+|+|+++++-..++
T Consensus       173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~  205 (367)
T TIGR02604       173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDP  205 (367)
T ss_pred             CCeEEEEecCcCCCccceECCCCCEEEEccCCC
Confidence            555544433334457899999998877654333

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.28  E-value=1.2  Score=41.03  Aligned_cols=137  Identities=17%  Similarity=0.144  Sum_probs=76.2

Q ss_pred             CceEEEEEecCccEEEeC---------------CeEEEEEcCC--Cee--eEEEeeccCCcceEEEecCCCcEEEEeecC
Q 014007          176 SEVRSVKLRRDRIIVVLE---------------QKIFVYNFAD--LKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (432)
Q Consensus       176 ~~v~~~~~~~~~~~~~~d---------------~~i~i~d~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (432)
                      .....|+|.++|++.+++               +.|.+++-.+  ++.  ...+.........+++.+++  ++++.   
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~---   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT---   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC---
Confidence            456678888888877752               2677776443  332  23332223334567787776  55542   


Q ss_pred             CCCcEEEE-EccCC-----ceee----eec----cCCceeEEEEcCCCCEEEEEcCC-------------------CceE
Q 014007          237 QKGQVRVE-HYASK-----RTKF----IMA----HDSRIACFALTQDGQLLATSSTK-------------------GTLV  283 (432)
Q Consensus       237 ~d~~i~i~-d~~~~-----~~~~----~~~----~~~~i~~~~~sp~~~~l~~~~~d-------------------g~~i  283 (432)
                      . ..|..+ |.+..     ....    +..    +......++|.|||.+.++-+..                   +. |
T Consensus        89 ~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i  166 (367)
T TIGR02604        89 P-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-L  166 (367)
T ss_pred             C-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce-E
Confidence            2 344433 54331     2111    111    23447789999999876654421                   34 5


Q ss_pred             EEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      .-+|...++ +..+..+ + .....++|+++|+++++-.
T Consensus       167 ~r~~pdg~~-~e~~a~G-~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       167 FRYNPDGGK-LRVVAHG-F-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EEEecCCCe-EEEEecC-c-CCCccceECCCCCEEEEcc
Confidence            555554443 3333322 2 3467899999999876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.16  E-value=1.5  Score=42.82  Aligned_cols=121  Identities=12%  Similarity=0.048  Sum_probs=72.6

Q ss_pred             ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC--CCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS--SNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      .+.-+.-+.-++ ++....++..+.|||.+.+.+..+-.- ...+.|.++.|.  |+|+.+++.+..+.|.+|--....-
T Consensus        31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            344444455444 444455554499999998876554442 135789999985  6899999999999999996543221


Q ss_pred             CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC-CCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      ..            ..++...           .+.+ .+..+. .+|.+..|.++|..++.+|  ..++|++
T Consensus       109 ~~------------~~p~w~~-----------i~~i-~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen  109 TN------------KGPSWAP-----------IRKI-DISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD  154 (631)
T ss_pred             hc------------CCcccce-----------eEEE-EeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence            10            0001110           1111 122222 4689999999988776544  4567654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.16  E-value=1.5  Score=36.17  Aligned_cols=134  Identities=18%  Similarity=0.201  Sum_probs=79.9

Q ss_pred             CeEEEecCCCCCCCCCCeEEEEeCCC--CceeEEeecCCceEEEEEecCccEEEe------CC---eEEEE-EcCC----
Q 014007          140 NILALVGGGPDPQYPLNKVMIWDDHQ--SRCIGELSFRSEVRSVKLRRDRIIVVL------EQ---KIFVY-NFAD----  203 (432)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~v~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~------d~---~i~i~-d~~~----  203 (432)
                      +.+++++++       +.|.+|++.+  .+.+.++..-+.|..+.++..|.++++      ..   .+|+| +.+.    
T Consensus        29 d~Lfva~~g-------~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~  101 (215)
T PF14761_consen   29 DALFVAASG-------CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE  101 (215)
T ss_pred             ceEEEEcCC-------CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence            566666555       7899999883  356677777799999999999999994      23   56665 2221    


Q ss_pred             CeeeE---------------------EEee-ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-----eee--
Q 014007          204 LKLLH---------------------QIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----KFI--  254 (432)
Q Consensus       204 ~~~~~---------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-----~~~--  254 (432)
                      .+++.                     .++. ...+..+++..|-...+++++    ++.+.+|.+.....     ..+  
T Consensus       102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~----~~~l~lf~l~~~~~~~~~~~~lDF  177 (215)
T PF14761_consen  102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC----GNKLVLFTLKYQTIQSEKFSFLDF  177 (215)
T ss_pred             CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc----CCEEEEEEEEEEEEecccccEEec
Confidence            11111                     1111 122345677777766766654    57899998765333     111  


Q ss_pred             -----eccCC-ceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007          255 -----MAHDS-RIACFALTQDGQLLATSSTKGTLVRIFNT  288 (432)
Q Consensus       255 -----~~~~~-~i~~~~~sp~~~~l~~~~~dg~~i~vwd~  288 (432)
                           ..|.+ .+..+++  -+.|+|..+...  ++++.+
T Consensus       178 e~~l~~~~~~~~p~~v~i--c~~yiA~~s~~e--v~Vlkl  213 (215)
T PF14761_consen  178 ERSLIDHIDNFKPTQVAI--CEGYIAVMSDLE--VLVLKL  213 (215)
T ss_pred             hhhhhheecCceEEEEEE--EeeEEEEecCCE--EEEEEE
Confidence                 11111 2445555  356777776653  676654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.14  E-value=4.3  Score=41.26  Aligned_cols=177  Identities=7%  Similarity=-0.004  Sum_probs=90.6

Q ss_pred             CeEEEEeCCCCceeEEeecCCceE-------------EEEEec---CccEEEe------------CCeEEEEEcCCCeee
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVR-------------SVKLRR---DRIIVVL------------EQKIFVYNFADLKLL  207 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~~~~~------------d~~i~i~d~~~~~~~  207 (432)
                      +.+.-.|.++|+.+..+...+.|.             .+.-.|   ++.+++.            +|.|+-+|.++|+.+
T Consensus       270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            899999999999887765433321             011111   3444441            478999999999998


Q ss_pred             EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007          208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd  287 (432)
                      -.+........  ..-+.++ .+. .++...=...-+|.+.+.+..-.+...+    .+....+.....-..+. |.-.|
T Consensus       350 W~~~~g~p~~~--~~~~~g~-~~~-~gg~n~W~~~s~D~~~glvy~ptGn~~p----d~~g~~r~~~~n~y~~s-lvALD  420 (764)
T TIGR03074       350 WAWDPGNPDPT--APPAPGE-TYT-RNTPNSWSVASYDEKLGLVYLPMGNQTP----DQWGGDRTPADEKYSSS-LVALD  420 (764)
T ss_pred             eEEecCCCCcc--cCCCCCC-Eec-cCCCCccCceEEcCCCCeEEEeCCCccc----cccCCccccCcccccce-EEEEe
Confidence            87753211111  0011222 111 1111111223344444333222222111    01000000001112344 77788


Q ss_pred             CCCCceEEEEEeCCCcC-------ceEEEEECC-CCC---EEEEEeCCCeEEEEEecCCCCCCCC
Q 014007          288 TLDGTLLQEVRRGADRA-------EIYSLAFSS-NAQ---WLAVSSDKGTVHVFNLKVNSGSARS  341 (432)
Q Consensus       288 ~~~~~~~~~~~~~~~~~-------~i~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~  341 (432)
                      .++|+..-.++...|..       ...=+.+.. +|+   .++.++.+|.++++|.++++.+...
T Consensus       421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            88888887776532321       111122322 553   7889999999999999999866553

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.13  E-value=0.81  Score=45.16  Aligned_cols=96  Identities=17%  Similarity=0.197  Sum_probs=63.3

Q ss_pred             CCCCcEEEEEccC-----Cce---------------eeeeccCCceeEEEEc--CCCCEEEEEcCCCceEEEEECCCC-c
Q 014007          236 LQKGQVRVEHYAS-----KRT---------------KFIMAHDSRIACFALT--QDGQLLATSSTKGTLVRIFNTLDG-T  292 (432)
Q Consensus       236 ~~d~~i~i~d~~~-----~~~---------------~~~~~~~~~i~~~~~s--p~~~~l~~~~~dg~~i~vwd~~~~-~  292 (432)
                      ..||.|.+|.+..     ...               ..........++++++  ...++||++++... |.||-.... .
T Consensus       121 ~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~-VTVFaf~l~~~  199 (717)
T PF08728_consen  121 TDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQE-VTVFAFALVDE  199 (717)
T ss_pred             ecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCce-EEEEEEecccc
Confidence            4899999997643     000               1112234578899998  78888998888888 888865432 1


Q ss_pred             eEEEEEeCCCcCceEEEEECCCC-----C-EEEEEeCCCeEEEEEe
Q 014007          293 LLQEVRRGADRAEIYSLAFSSNA-----Q-WLAVSSDKGTVHVFNL  332 (432)
Q Consensus       293 ~~~~~~~~~~~~~i~~~~~s~~~-----~-~l~~~~~dg~i~iwd~  332 (432)
                      ....-..+.+...|.+|+|-++.     . .|++++-.|.+.+|++
T Consensus       200 r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  200 RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            11111111244678899997643     2 7888889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.09  E-value=0.28  Score=49.91  Aligned_cols=143  Identities=11%  Similarity=0.083  Sum_probs=87.5

Q ss_pred             CCceEEEEEecCccEEE---e--CCeEEEEEcCCCeeeE-----EEee------ccCCcceEEEecCCCcEEEEeecCCC
Q 014007          175 RSEVRSVKLRRDRIIVV---L--EQKIFVYNFADLKLLH-----QIET------IANPKGLCAVSQGVGSLVLVCPGLQK  238 (432)
Q Consensus       175 ~~~v~~~~~~~~~~~~~---~--d~~i~i~d~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (432)
                      .-++..+...+|+...+   +  +..|..||+++...-.     -+..      ......++.|.|.-....+++  ..|
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~--l~d  177 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVD--LSD  177 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhh--ccc
Confidence            44566677777766554   2  3378999987632211     1111      111223456666544333333  467


Q ss_pred             CcEEEEEccCCceee-eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC--CcCceEEEEECCCC
Q 014007          239 GQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYSLAFSSNA  315 (432)
Q Consensus       239 ~~i~i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~~  315 (432)
                      +.|++..+....... -..-....++++|+|.|+.+++|-..|+ +.-|. .+++....+....  ....|.+|+|-...
T Consensus       178 lsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  178 LSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             cchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCe-EEEee-cccceeecccCCCcCCCcceeEEEEecce
Confidence            888887665422211 1244567899999999999999999999 77775 4565555554432  12579999998776


Q ss_pred             CEEEEE
Q 014007          316 QWLAVS  321 (432)
Q Consensus       316 ~~l~~~  321 (432)
                      .++++-
T Consensus       256 eflvvy  261 (1405)
T KOG3630|consen  256 EFLVVY  261 (1405)
T ss_pred             eEEEEe
Confidence            666643

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.09  E-value=0.52  Score=44.63  Aligned_cols=145  Identities=11%  Similarity=0.091  Sum_probs=85.3

Q ss_pred             CCceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC---cEEEEeecCCCCcEEEEEc
Q 014007          175 RSEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG---SLVLVCPGLQKGQVRVEHY  246 (432)
Q Consensus       175 ~~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~i~d~  246 (432)
                      -.++.+++|.....++.+     +|.+++=|-   +.+..|    ..|..+.|.|-+.   -.++|.  .....|.+|.+
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAV--QHkkhVtVWqL   89 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAV--QHKKHVTVWQL   89 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEE--eccceEEEEEe
Confidence            467888888654444442     555554442   233333    3456778877532   123444  36789999998


Q ss_pred             cCC---ceeeee----cc--CC--ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc--eEEEEEeCCCcCceEEEEECC
Q 014007          247 ASK---RTKFIM----AH--DS--RIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       247 ~~~---~~~~~~----~~--~~--~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~--~~~~~~~~~~~~~i~~~~~s~  313 (432)
                      ...   .-+.+.    ..  .-  -...+.|+|....|++-..... -.+++++...  ....++   ..+-|.+.+|.+
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-SV~~sV~~d~srVkaDi~---~~G~IhCACWT~  165 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-SVLPSVHCDSSRVKADIK---TSGLIHCACWTK  165 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-eEeeeeeeCCceEEEecc---CCceEEEEEecC
Confidence            631   111111    11  11  1245779999999888776654 4556665433  333343   447899999999


Q ss_pred             CCCEEEEEe-CCCeEEEEEe
Q 014007          314 NAQWLAVSS-DKGTVHVFNL  332 (432)
Q Consensus       314 ~~~~l~~~~-~dg~i~iwd~  332 (432)
                      ||+.|+++- ..=.-+|||-
T Consensus       166 DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  166 DGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             cCCEEEEEeCCeEEEEEecC
Confidence            999887663 3334578873

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.04  E-value=2.2  Score=37.28  Aligned_cols=217  Identities=13%  Similarity=0.138  Sum_probs=120.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEcCC-----CeeEEEeeccc--C--cceeEEEEeeeCCeEE------------E
Q 014007           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDP-----FREIFRRDFER--G--GGIGVVEMLFRCNILA------------L  144 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~-----~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~------------~  144 (432)
                      .-+.|+|+|.+.+-++....+ ..+||.+.     -...+...+..  +  .....+.+.|+....+            +
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            457899999887666555433 89999861     12122233321  1  1234556666543332            3


Q ss_pred             ecCCCCCCCCCCeEEEEeCCCCce-----eEEee--cCCc-eEEEEEecC--ccEEE----eCCeEEEEEcCCCeeeEE-
Q 014007          145 VGGGPDPQYPLNKVMIWDDHQSRC-----IGELS--FRSE-VRSVKLRRD--RIIVV----LEQKIFVYNFADLKLLHQ-  209 (432)
Q Consensus       145 ~s~~~d~~~~~~~v~iwd~~~~~~-----~~~~~--~~~~-v~~~~~~~~--~~~~~----~d~~i~i~d~~~~~~~~~-  209 (432)
                      +.+.++     |+|.-|...-+..     ...+.  ..+. -+.+++...  +.+|.    ..++|.+||-. ...+.. 
T Consensus       104 if~tEd-----GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~  177 (336)
T TIGR03118       104 LFVTED-----GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLP  177 (336)
T ss_pred             EEEeCC-----ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCC
Confidence            444455     8999998533322     12222  1233 345666533  44444    27899999843 222211 


Q ss_pred             --Eee-----ccCCcceEEEecCCCcEEEEee-----------cCCCCcEEEEEccCCceeeee--ccCCceeEEEEcC-
Q 014007          210 --IET-----IANPKGLCAVSQGVGSLVLVCP-----------GLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQ-  268 (432)
Q Consensus       210 --~~~-----~~~~~~~~~~~~~~~~~~~~~~-----------g~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~sp-  268 (432)
                        +..     ...+...   .--+..+++.++           |.--|.|-+||.....++++.  +.-...+.|+..| 
T Consensus       178 g~F~DP~iPagyAPFnI---qnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa  254 (336)
T TIGR03118       178 GSFIDPALPAGYAPFNV---QNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPE  254 (336)
T ss_pred             CCccCCCCCCCCCCcce---EEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChh
Confidence              100     0011111   111223333321           223478999999988777663  2334456777766 


Q ss_pred             -----CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC----cCceEEEEECC
Q 014007          269 -----DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----RAEIYSLAFSS  313 (432)
Q Consensus       269 -----~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~----~~~i~~~~~s~  313 (432)
                           .|.+|+---.||+ |..||..+++.+-.+.....    ...++.|+|..
T Consensus       255 ~FG~~sg~lLVGNFGDG~-InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       255 SFGSLSGALLVGNFGDGT-INAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             hhCCCCCCeEEeecCCce-eEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence                 5777877777999 99999999998887775321    13567888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.04  E-value=2.1  Score=37.12  Aligned_cols=157  Identities=12%  Similarity=0.046  Sum_probs=86.7

Q ss_pred             CeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe-C
Q 014007           87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD-D  163 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd-~  163 (432)
                      .+.+.+++++++.+|...  +++-.||-...+.... ..+   ....+....|++++...+....+     ...+++. .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~-~~~---~g~~l~~PS~d~~g~~W~v~~~~-----~~~~~~~~~   95 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR-PVL---TGGSLTRPSWDPDGWVWTVDDGS-----GGVRVVRDS   95 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce-eec---cCCccccccccCCCCEEEEEcCC-----CceEEEEec
Confidence            688899999999877655  4443444333332221 111   22366777888887666555544     5555553 3


Q ss_pred             CCCcee-EEee---cCCceEEEEEecCccEEE--e----CCeEEEEEcCC---C--e----eeEEEeeccCCcceEEEec
Q 014007          164 HQSRCI-GELS---FRSEVRSVKLRRDRIIVV--L----EQKIFVYNFAD---L--K----LLHQIETIANPKGLCAVSQ  224 (432)
Q Consensus       164 ~~~~~~-~~~~---~~~~v~~~~~~~~~~~~~--~----d~~i~i~d~~~---~--~----~~~~~~~~~~~~~~~~~~~  224 (432)
                      ..++.. ..+.   ....|..+.++|||..++  .    ++.|.+--+..   +  .    .+.........+..+.|..
T Consensus        96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen   96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            333322 2222   222899999999998887  3    56777765432   3  1    1111112234667788888


Q ss_pred             CCCcEEEEeecCCCCcEEE-EEccCCceeee
Q 014007          225 GVGSLVLVCPGLQKGQVRV-EHYASKRTKFI  254 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i-~d~~~~~~~~~  254 (432)
                      ++..+++.  ...++.+.. ..........+
T Consensus       176 ~~~L~V~~--~~~~~~~~~~v~~dG~~~~~l  204 (253)
T PF10647_consen  176 DSTLVVLG--RSAGGPVVRLVSVDGGPSTPL  204 (253)
T ss_pred             CCEEEEEe--CCCCCceeEEEEccCCccccc
Confidence            87643332  334454444 44554444333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.92  E-value=2.5  Score=41.88  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=74.9

Q ss_pred             eeEEEEcC--CCCEEEEEcCCCceEEEEECCC-------C-------------ceEEEEEeCCCcCceEEEEEC--CCCC
Q 014007          261 IACFALTQ--DGQLLATSSTKGTLVRIFNTLD-------G-------------TLLQEVRRGADRAEIYSLAFS--SNAQ  316 (432)
Q Consensus       261 i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~-------~-------------~~~~~~~~~~~~~~i~~~~~s--~~~~  316 (432)
                      |+-|....  +...|+.+..||. |.+|.+++       .             ++...+.   .....++++++  ...+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~-V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~r  178 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGD-VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKSR  178 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCe-EEEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcce
Confidence            44444333  4568899999999 99996631       0             1222333   33578999998  7888


Q ss_pred             EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC---C
Q 014007          317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK---N  393 (432)
Q Consensus       317 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~  393 (432)
                      +||+++....|.||-..........                          .      .-..+...|.+|+|-++.   .
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~--------------------------~------~s~~~~hNIP~VSFl~~~~d~~  226 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYH--------------------------V------PSHQHSHNIPNVSFLDDDLDPN  226 (717)
T ss_pred             EEEEecCCceEEEEEEecccccccc--------------------------c------cccccccCCCeeEeecCCCCCc
Confidence            9999988888888876653211000                          0      000134568889997743   2


Q ss_pred             ---EEEEEecCCeEEEEEec
Q 014007          394 ---TVVILGMDGSFYRCQFD  410 (432)
Q Consensus       394 ---~l~~~~~dg~v~iw~~~  410 (432)
                         +|++++-.|.+.+|++.
T Consensus       227 G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  227 GHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             cceEEEEEeccCcEEEEEEE
Confidence               78889999999999884

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.84  E-value=2.8  Score=38.61  Aligned_cols=155  Identities=10%  Similarity=0.017  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007           89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (432)
Q Consensus        89 ~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~  168 (432)
                      +.+-|...++.|.+...+++.=|-+.+........+.....+.|.++.|++|...++.--.+     .+|.+++....+.
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~-----~~v~f~nf~~d~~  100 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTS-----KTVDFCNFIPDNS  100 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecC-----ceEEEEecCCCch
Confidence            44566666677776667776667665433322233332356699999999999999998888     9999999754443


Q ss_pred             eEEee-----cCCceEEEEEecCccEEE-eCCeEEEEEcCC-CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007          169 IGELS-----FRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       169 ~~~~~-----~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (432)
                      ...+.     ....|.+..|+.+..+.. .+.-+-+|.+.. .+.++..+.+.-.+....|.++.+-.++++ +-..+.+
T Consensus       101 ~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t-~~~~n~l  179 (657)
T KOG2377|consen  101 QLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST-TVLENVL  179 (657)
T ss_pred             hhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec-ccccccc
Confidence            33322     345588999988755444 577777776544 234555566777788889999877655543 4344444


Q ss_pred             EEEEccCC
Q 014007          242 RVEHYASK  249 (432)
Q Consensus       242 ~i~d~~~~  249 (432)
                      .=+.++.+
T Consensus       180 npf~~~~~  187 (657)
T KOG2377|consen  180 NPFHFRAG  187 (657)
T ss_pred             ccEEEeec
Confidence            44555543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.78  E-value=4  Score=39.04  Aligned_cols=113  Identities=7%  Similarity=0.050  Sum_probs=68.3

Q ss_pred             CCCCeEEEEEcCCC-----CEEEEEcCCcEEEEEcC-----CCeeEEEeecccCccee--EEEEeeeCCeEEEecCCCCC
Q 014007           84 PPPTLLHISFNQDH-----GCFAAGTDHGFRIYNCD-----PFREIFRRDFERGGGIG--VVEMLFRCNILALVGGGPDP  151 (432)
Q Consensus        84 ~~~~v~~~~~s~~~-----~~l~~~~~~~i~iw~~~-----~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~s~~~d~  151 (432)
                      .-+.|..+.|.|-+     .+||+-..+.|.||.+-     ..+....++.+-+....  -..+.|+|....++.-... 
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~-  133 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR-  133 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC-
Confidence            34579999999864     47888888889999874     22222222222111112  2356788876554433322 


Q ss_pred             CCCCCeEEEEeCCCC--ceeEEeecCCceEEEEEecCccEEEe--CC--eEEEEEc
Q 014007          152 QYPLNKVMIWDDHQS--RCIGELSFRSEVRSVKLRRDRIIVVL--EQ--KIFVYNF  201 (432)
Q Consensus       152 ~~~~~~v~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~--d~--~i~i~d~  201 (432)
                          ..-.++++...  .....++..+-|.|.+|.+||..++.  +.  .-++||-
T Consensus       134 ----dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  134 ----DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ----ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence                23344554433  34445568899999999999987762  43  4567773

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.67  E-value=0.54  Score=47.07  Aligned_cols=76  Identities=18%  Similarity=0.284  Sum_probs=53.5

Q ss_pred             CceeEEEEcCCCCEEEEEcCCCceEEEEECCC----------Cce--E-EEEE------eCCCcCceEEEEECCC---CC
Q 014007          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTL--L-QEVR------RGADRAEIYSLAFSSN---AQ  316 (432)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~----------~~~--~-~~~~------~~~~~~~i~~~~~s~~---~~  316 (432)
                      -.|..|.++|+|++|+..|..|  |.|-.+..          |+.  . +.+.      .......|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            4688999999999999999877  45544421          111  1 1111      1123357999999996   47


Q ss_pred             EEEEEeCCCeEEEEEecCCC
Q 014007          317 WLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       317 ~l~~~~~dg~i~iwd~~~~~  336 (432)
                      .|+.-..|+++++||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            88888999999999997544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.49  E-value=0.17  Score=29.52  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=25.9

Q ss_pred             CceEEEEECCCC---CEEEEEeCCCeEEEEEecC
Q 014007          304 AEIYSLAFSSNA---QWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       304 ~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~~  334 (432)
                      +.+.++.|||+.   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358899999854   4888888889999999995

It contains a characteristic DLL sequence motif.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=94.43  E-value=4.9  Score=38.58  Aligned_cols=275  Identities=13%  Similarity=0.090  Sum_probs=122.0

Q ss_pred             eCCeEEEecC---CCCCCCCCCeEEEEeCCCCceeEEeec-CCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEee
Q 014007          138 RCNILALVGG---GPDPQYPLNKVMIWDDHQSRCIGELSF-RSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIET  212 (432)
Q Consensus       138 ~~~~~~~~s~---~~d~~~~~~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~  212 (432)
                      ..+++.++..   ...     ....++| ..|..+..+.. ......+...++|.+++ ..+.++.+|+ .|+.+.....
T Consensus       112 ~~~gl~~~~~~~~~~~-----~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~-~G~v~~~~~l  184 (477)
T PF05935_consen  112 MEDGLYFVNGNDWDSS-----SYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDL-LGKVIWEYDL  184 (477)
T ss_dssp             -TT-EEEEEETT--BE-----EEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-T-T--EEEEEE-
T ss_pred             cCCcEEEEeCCCCCCC-----ceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcC-CCCEEEeeec
Confidence            3466777776   223     6788888 56777666652 11111266778998888 4788899997 4776666554


Q ss_pred             ccCC---cceEEEecCCCcEEEEee-------cC----CC---------CcEEEEEccCC--ceee----------e---
Q 014007          213 IANP---KGLCAVSQGVGSLVLVCP-------GL----QK---------GQVRVEHYASK--RTKF----------I---  254 (432)
Q Consensus       213 ~~~~---~~~~~~~~~~~~~~~~~~-------g~----~d---------~~i~i~d~~~~--~~~~----------~---  254 (432)
                      ....   ...+..-|+|+.++++..       ..    .|         ..+..||+..-  ....          .   
T Consensus       185 ~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~  264 (477)
T PF05935_consen  185 PGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGS  264 (477)
T ss_dssp             -TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-S
T ss_pred             CCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccC
Confidence            3322   345777788877766541       00    12         22233333320  0000          0   


Q ss_pred             eccC--CceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC-cCc----eEE---------------EEE
Q 014007          255 MAHD--SRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-RAE----IYS---------------LAF  311 (432)
Q Consensus       255 ~~~~--~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~-~~~----i~~---------------~~~  311 (432)
                      ....  --+.++.+.+ ++.+|+++-.-.. |...|.++++....+..+.. ...    +..               ..|
T Consensus       265 ~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~-V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~  343 (477)
T PF05935_consen  265 GGGRDWLHINSIDYDPSDDSIIVSSRHQSA-VIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDW  343 (477)
T ss_dssp             STTSBS--EEEEEEETTTTEEEEEETTT-E-EEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS---
T ss_pred             CCCCCccccCccEEeCCCCeEEEEcCcceE-EEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcc
Confidence            0001  1378999998 5555555555556 88999888888766653210 000    000               111


Q ss_pred             CCCCCEEEEEeCCC---eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe---cCCCceE
Q 014007          312 SSNAQWLAVSSDKG---TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL---VEGSPYI  385 (432)
Q Consensus       312 s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~  385 (432)
                       .-|++-+.--.+|   .|.+||=...+.........  ......+...+.-....+.....|.+..-++   -...+..
T Consensus       344 -~~gQH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~--~~~~~Sr~v~Y~Ide~~~T~~~vw~y~~~~g~~~yS~~~s~  420 (477)
T PF05935_consen  344 -FWGQHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVS--PKDNYSRAVEYRIDENKMTVEQVWEYGKPRGNEFYSPIVSS  420 (477)
T ss_dssp             --SS-EEEEE-TTS---SEEEEE--TTGGGS--SSCC--G-----EEEEEEEETTTTEEEEEEEESGGGGGGG--SS--E
T ss_pred             -cccccceEEcCCCCeEEEEEEECCCCCCCCCccccc--cccccceEEEEEecCCCceEEEEEEeCCCCCCCccCCccee
Confidence             1245555555677   89999876655221110000  0000000111111111122223332221111   1245777


Q ss_pred             EEEccC-CCEEEEEecCCeE--------EEEEecCCCCCcceEeeec
Q 014007          386 VAFGHQ-KNTVVILGMDGSF--------YRCQFDPVNGGEMTQLEYN  423 (432)
Q Consensus       386 ~~~s~~-~~~l~~~~~dg~v--------~iw~~~~~~~~~~~~~~~~  423 (432)
                      +.+-++ |++|+..+..|..        ++-.++...++.+..++..
T Consensus       421 aq~l~n~gn~li~~g~~~~~~~~~~~~~~i~ev~~~~~~v~~e~~~~  467 (477)
T PF05935_consen  421 AQYLPNKGNTLITSGMAGLFSNGKPSKGIIIEVDPETKEVVFELTIP  467 (477)
T ss_dssp             EEEETTTTEEEEEEEEETTTSTTSEEEEEEEEEETTT--EEEEEEEE
T ss_pred             eEEecCCCCEEEEeCcccccccCCCCCceEEEEEcCCCEEEEEEEEe
Confidence            888888 9999887776544        5666777766655555543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.29  E-value=3.7  Score=36.51  Aligned_cols=227  Identities=13%  Similarity=0.126  Sum_probs=102.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~  166 (432)
                      ..++|.|..+ ..+++| +.++.+...+.++.=....+...-......+....+....+.+..      |.|+.=. ..|
T Consensus        63 ~l~~I~f~~~-~g~ivG-~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~-DgG  133 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVG-EPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR------GAIYRTT-DGG  133 (302)
T ss_dssp             EEEEEEEETT-EEEEEE-ETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--------EEEES-STT
T ss_pred             eEEEEEecCC-ceEEEc-CCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeC-CCC
Confidence            4677888654 445555 445544444433321111111011122233333333333333332      5544332 333


Q ss_pred             ceeEEee--cCCceEEEEEecCccEEEe--CCe-EEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007          167 RCIGELS--FRSEVRSVKLRRDRIIVVL--EQK-IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       167 ~~~~~~~--~~~~v~~~~~~~~~~~~~~--d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (432)
                      +.=..+.  ..+.+..+..++||.+++.  .|. ..-||--...-...-+.....+..+.|.+++.. .+++   ..|.|
T Consensus       134 ~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~l-w~~~---~Gg~~  209 (302)
T PF14870_consen  134 KTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNL-WMLA---RGGQI  209 (302)
T ss_dssp             SSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-E-EEEE---TTTEE
T ss_pred             CCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCE-EEEe---CCcEE
Confidence            3322222  4677888889999999884  454 456664321112222234567888999999654 4444   45788


Q ss_pred             EEEEccC--Cce----eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEECCC
Q 014007          242 RVEHYAS--KRT----KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSN  314 (432)
Q Consensus       242 ~i~d~~~--~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~  314 (432)
                      ++=+...  ..-    ..+....-.+..++|.+++...++|+. |. + +.....|+.-+..+.. .-...++.+.|..+
T Consensus       210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-L-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP  286 (302)
T ss_dssp             EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T--E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred             EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-E-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence            7766221  111    111122334889999998877776654 44 3 4455566655544421 12356889999776


Q ss_pred             CCEEEEEeCCCeEEEE
Q 014007          315 AQWLAVSSDKGTVHVF  330 (432)
Q Consensus       315 ~~~l~~~~~dg~i~iw  330 (432)
                      .+-++.| .+|.|.-|
T Consensus       287 ~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  287 DKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             TEEEEE--STTEEEEE
T ss_pred             CceEEEC-CCcEEEEe
Confidence            6666655 67876544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.24  E-value=0.29  Score=28.60  Aligned_cols=31  Identities=26%  Similarity=0.483  Sum_probs=25.1

Q ss_pred             CceeEEEEcCCC---CEEEEEcCCCceEEEEECCC
Q 014007          259 SRIACFALTQDG---QLLATSSTKGTLVRIFNTLD  290 (432)
Q Consensus       259 ~~i~~~~~sp~~---~~l~~~~~dg~~i~vwd~~~  290 (432)
                      +.|.++.|+|+.   .+|+.+-..+. |.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence            468899999854   47877777787 99999985

It contains a characteristic DLL sequence motif.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.15  E-value=2.9  Score=34.92  Aligned_cols=95  Identities=14%  Similarity=0.197  Sum_probs=63.1

Q ss_pred             ceeEEEEcCCCCEEE-EEcCCCceEEEEE--CCCCc-----eEEEEEeCC--CcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007          260 RIACFALTQDGQLLA-TSSTKGTLVRIFN--TLDGT-----LLQEVRRGA--DRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (432)
Q Consensus       260 ~i~~~~~sp~~~~l~-~~~~dg~~i~vwd--~~~~~-----~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i  329 (432)
                      --+.++|+.+.+.+. +-+.+-. |.-||  ..+|.     .+..++...  .....-.++...+|.+.++.-..++|..
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~-V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYE-VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK  237 (310)
T ss_pred             CCccccccccCcEEEEEccCceE-EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence            345788887776554 4455555 76677  55553     333333210  1122345666778888888888999999


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007          330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (432)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  390 (432)
                      .|..+++.                                   +..++.+...|++++|--
T Consensus       238 ~dp~tGK~-----------------------------------L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  238 VDPTTGKI-----------------------------------LLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ECCCCCcE-----------------------------------EEEEEcCCCceEEEEecC
Confidence            99999984                                   345777788899999965

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.07  E-value=0.35  Score=40.76  Aligned_cols=69  Identities=17%  Similarity=0.259  Sum_probs=52.2

Q ss_pred             EcCCCCEEEEEcCCCceEEEEECCCCceEEEE-------Ee-----CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV-------RR-----GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       266 ~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~-------~~-----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      +..++++|++-+.+|. +++||+.+++++..-       ..     ......|..+.++.+|.-|++-+ +|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            4457889999999999 999999998765432       10     01336789999999998887765 5788999887


Q ss_pred             CCC
Q 014007          334 VNS  336 (432)
Q Consensus       334 ~~~  336 (432)
                      -+.
T Consensus        96 L~~   98 (219)
T PF07569_consen   96 LGC   98 (219)
T ss_pred             cce
Confidence            655

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.01  E-value=3.9  Score=35.79  Aligned_cols=198  Identities=11%  Similarity=0.085  Sum_probs=111.7

Q ss_pred             eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC------CC-ceeEEee------cCCceEEEEEecCccE-------
Q 014007          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------QS-RCIGELS------FRSEVRSVKLRRDRII-------  189 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~------~~-~~~~~~~------~~~~v~~~~~~~~~~~-------  189 (432)
                      ..-+.++++|.+.+-++....     +...+||..      .. ..+-.+.      .....+.+.|+....+       
T Consensus        23 ~N~WGia~~p~~~~WVadngT-----~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~   97 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGT-----GTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI   97 (336)
T ss_pred             cccceeEecCCCCEEEecCCc-----ceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence            445788899888777777666     899999976      12 2222332      1346778888754333       


Q ss_pred             ------EE--eCCeEEEEEcCCCee-----eEEEeec-cCCc-ceEEEecC--CCcEEEEeecCCCCcEEEEEccCCcee
Q 014007          190 ------VV--LEQKIFVYNFADLKL-----LHQIETI-ANPK-GLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASKRTK  252 (432)
Q Consensus       190 ------~~--~d~~i~i~d~~~~~~-----~~~~~~~-~~~~-~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~~~~  252 (432)
                            +.  .||+|.-|...-+..     ...+... ...+ ..+++...  ++.++.  +.-..++|.+||-.-.++.
T Consensus        98 ~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa--adF~~g~IDVFd~~f~~~~  175 (336)
T TIGR03118        98 TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA--ANFRQGRIDVFKGSFRPPP  175 (336)
T ss_pred             ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE--eccCCCceEEecCcccccc
Confidence                  22  278888887432211     1122111 1222 23555543  334433  2456888998886554332


Q ss_pred             e---ee-----ccC-----------CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007          253 F---IM-----AHD-----------SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       253 ~---~~-----~~~-----------~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~  313 (432)
                      .   +.     .--           -.|+-..-.++++.=+.|..-|. |-+||+ +|+.++++.....-...+.|+..|
T Consensus       176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~-VdvFd~-~G~l~~r~as~g~LNaPWG~a~AP  253 (336)
T TIGR03118       176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGY-VNVFTL-NGQLLRRVASSGRLNAPWGLAIAP  253 (336)
T ss_pred             CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcce-EEEEcC-CCcEEEEeccCCcccCCceeeeCh
Confidence            1   00     000           01111122223322233444567 999995 888988886443334567787765


Q ss_pred             ------CCCEEEEEeCCCeEEEEEecCCC
Q 014007          314 ------NAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       314 ------~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                            .|.+|+---.||+|..||..+++
T Consensus       254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       254 ESFGSLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             hhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence                  45666655579999999999887

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.94  E-value=3.9  Score=35.52  Aligned_cols=192  Identities=8%  Similarity=0.062  Sum_probs=112.2

Q ss_pred             ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE---EeecCCceEEEEEecCccEEE-eCCeEEEEEcCCC
Q 014007          129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADL  204 (432)
Q Consensus       129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~  204 (432)
                      ..-+.++.++.+..+++-.+       .-++|.|+.+...-.   .+...+--.++..+-+-.+++ .|.-+.+.|+.+.
T Consensus        86 ~~l~~Dv~vse~yvyvad~s-------sGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdp  158 (370)
T COG5276          86 RDLFADVRVSEEYVYVADWS-------SGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDP  158 (370)
T ss_pred             hhhhheeEecccEEEEEcCC-------CceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCC
Confidence            34455677777777766654       679999998764322   233335555666655555555 3777788888764


Q ss_pred             ee---eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeecc---CCceeEEEEcCCCCEEEEEcC
Q 014007          205 KL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSST  278 (432)
Q Consensus       205 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~  278 (432)
                      +.   .-...........+++  .|++.++++   .|+-+.+.|+.....-.+.+|   ...+.++..+++..+++...+
T Consensus       159 ssP~lagrya~~~~d~~~v~I--SGn~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e  233 (370)
T COG5276         159 SSPQLAGRYALPGGDTHDVAI--SGNYAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE  233 (370)
T ss_pred             CCceeeeeeccCCCCceeEEE--ecCeEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc
Confidence            32   2222222222223444  455666665   789999999988544444433   336888888877766655443


Q ss_pred             CCceEEEEECCCCceEEEEEeCCCcCceEEE-EECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSL-AFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                       |  +.+-|..+.+....+..- ....+.++ .+.-.+++......+.-+.+-|+.+..
T Consensus       234 -g--vlivd~s~~ssp~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~  288 (370)
T COG5276         234 -G--VLIVDVSGPSSPTVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP  288 (370)
T ss_pred             -c--eEEEecCCCCCceEeecc-ccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence             3  778887766644444321 22222222 233345666666666667777877654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.91  E-value=3.2  Score=34.40  Aligned_cols=106  Identities=12%  Similarity=0.113  Sum_probs=66.8

Q ss_pred             CCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC-CCCeEEEE-eCCC----Cce--
Q 014007           97 HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY-PLNKVMIW-DDHQ----SRC--  168 (432)
Q Consensus        97 ~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~-~~~~v~iw-d~~~----~~~--  168 (432)
                      +.+|++++...|.+|++..........+.  .-+.|..+.++..|.++++-..+..- ....+|+| |++.    .+.  
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            34445444556999999866666667775  66889999999999999986544111 01256665 1111    111  


Q ss_pred             -------------------e--EEeecCCceEEEEEec-CccEEE-eCCeEEEEEcCCC
Q 014007          169 -------------------I--GELSFRSEVRSVKLRR-DRIIVV-LEQKIFVYNFADL  204 (432)
Q Consensus       169 -------------------~--~~~~~~~~v~~~~~~~-~~~~~~-~d~~i~i~d~~~~  204 (432)
                                         +  -++....++.+++.-| .|.+++ .++.+.+|.+...
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~  165 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ  165 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence                               1  1222445677777766 577666 5899999987653

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.82  E-value=8.4  Score=39.60  Aligned_cols=134  Identities=13%  Similarity=0.079  Sum_probs=76.4

Q ss_pred             EEEEEcCCCeeeEEEeeccC----CcceEEEecCCCcEEEEeecC----------CCCcEEEEEccC-Cc-eeeeec--c
Q 014007          196 IFVYNFADLKLLHQIETIAN----PKGLCAVSQGVGSLVLVCPGL----------QKGQVRVEHYAS-KR-TKFIMA--H  257 (432)
Q Consensus       196 i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~----------~d~~i~i~d~~~-~~-~~~~~~--~  257 (432)
                      |+++|...++.+..+....+    .+..+.|+......+++.++.          .+|.++.|++-. +. +..+..  -
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            77777777766655543332    233455555555533333221          234466666533 22 222211  1


Q ss_pred             CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      .+.|  .++.|-..++++|-.+ . +++||+...+++++.....-+..|..+++  .+..+++|...-.++++..+..
T Consensus       935 ~~~v--~Ai~~f~~~~LagvG~-~-l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen  935 PGPV--GAICPFQGRVLAGVGR-F-LRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred             Cccc--eEEeccCCEEEEeccc-E-EEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecC
Confidence            2233  3456766666665544 4 99999998888777665433567888887  4577888876666666655543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.79  E-value=4.1  Score=35.35  Aligned_cols=223  Identities=11%  Similarity=0.092  Sum_probs=124.7

Q ss_pred             cCCCCEEEEEc-CCcEEEEEcCCCe-eEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC---ce
Q 014007           94 NQDHGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RC  168 (432)
Q Consensus        94 s~~~~~l~~~~-~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~---~~  168 (432)
                      .-.|++..++. ++++.+.|+.+.. ..+...+. ........++.+.+..+++.-+       +-+.+-|+...   ..
T Consensus       135 ~vsGn~aYVadlddgfLivdvsdpssP~lagrya-~~~~d~~~v~ISGn~AYvA~~d-------~GL~ivDVSnp~sPvl  206 (370)
T COG5276         135 YVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYA-LPGGDTHDVAISGNYAYVAWRD-------GGLTIVDVSNPHSPVL  206 (370)
T ss_pred             EecCCEEEEeeccCcEEEEECCCCCCceeeeeec-cCCCCceeEEEecCeEEEEEeC-------CCeEEEEccCCCCCeE
Confidence            33577887777 8899999986443 33333332 2333345666676666655433       67888888764   34


Q ss_pred             eEEeecCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEE--eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEE
Q 014007          169 IGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (432)
Q Consensus       169 ~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d  245 (432)
                      +........+.++..+++..+++ .+.-+.+-|..+.+....+  ....++...-.+.-.++..+++-   .+.-+.+.|
T Consensus       207 i~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvad---ga~gl~~id  283 (370)
T COG5276         207 IGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVAD---GAKGLPIID  283 (370)
T ss_pred             EEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeec---cccCceeEe
Confidence            44444555889999999988887 4777888887776544333  22333433334455566666553   345556666


Q ss_pred             ccCCceeeeecc----CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007          246 YASKRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (432)
Q Consensus       246 ~~~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  321 (432)
                      +....--.+..|    ...-..+..  .+.++..+..+ . ..+-|....+......+  ....+.+.+.+-+.+.+.+.
T Consensus       284 isnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~-g~vV~~s~~s~m~~~~g--~~ti~~s~~v~~~~q~~y~~  357 (370)
T COG5276         284 ISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-T-GAVVDASPPSMMDKRPG--RPTIGQSCDVSVDTQIIYST  357 (370)
T ss_pred             ccCCCCCchhccccCCCccccceEE--ecCeeEeccCC-c-eEEEeCCChhhcccccC--cceEeeecceEEEeeEEEEe
Confidence            665332222211    112222322  34455555444 2 34555443332222221  11233444444456678888


Q ss_pred             eCCCeEEEEEec
Q 014007          322 SDKGTVHVFNLK  333 (432)
Q Consensus       322 ~~dg~i~iwd~~  333 (432)
                      ..++.+.||+..
T Consensus       358 d~~~gl~i~~~~  369 (370)
T COG5276         358 DYNGGLSIIEYL  369 (370)
T ss_pred             ecCCCEEEEEec
Confidence            888889999863

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.76  E-value=4.7  Score=35.84  Aligned_cols=234  Identities=15%  Similarity=0.170  Sum_probs=103.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEe---ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw  161 (432)
                      ...+..|.|..+..-+++|..+.  |+....+......   ............+.|..+..+++ +..      + +.+.
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~iv-G~~------g-~ll~   85 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIV-GEP------G-LLLH   85 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEE-EET------T-EEEE
T ss_pred             CCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEE-cCC------c-eEEE
Confidence            45889999997777788887654  3444333222111   11101134566777777655544 331      3 4444


Q ss_pred             eCCCCceeEEee----cCCceEEEEEecCccEEEeCCeEEEEEcCC-CeeeEE-EeeccCCcceEEEecCCCcEEEEeec
Q 014007          162 DDHQSRCIGELS----FRSEVRSVKLRRDRIIVVLEQKIFVYNFAD-LKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       162 d~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      ....|+.=..+.    .++....+....++...+....=.||...+ |+.-+. .......+..+..+++|..+++.   
T Consensus        86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs---  162 (302)
T PF14870_consen   86 TTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS---  162 (302)
T ss_dssp             ESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE---
T ss_pred             ecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE---
Confidence            444454333332    234444444444444333222223443333 332222 22333455566677887744332   


Q ss_pred             CCCCcEE-EEEccCCceee-eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEEC-CCCceEEE--EEeCCCcCceEEEE
Q 014007          236 LQKGQVR-VEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT-LDGTLLQE--VRRGADRAEIYSLA  310 (432)
Q Consensus       236 ~~d~~i~-i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~-~~~~~~~~--~~~~~~~~~i~~~~  310 (432)
                       ..|.+. -||--...-.. -......|.+|.|.|++.+.+++ ..|. |++=+. ...+....  .......-.+..++
T Consensus       163 -~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a  239 (302)
T PF14870_consen  163 -SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILDLA  239 (302)
T ss_dssp             -TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEEEE
T ss_pred             -CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEEEE
Confidence             345554 45544322222 22356789999999998876655 6776 777661 12221111  11101223589999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          311 FSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       311 ~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      |.+++...++|+ .|.+ +...+.++
T Consensus       240 ~~~~~~~wa~gg-~G~l-~~S~DgGk  263 (302)
T PF14870_consen  240 YRPPNEIWAVGG-SGTL-LVSTDGGK  263 (302)
T ss_dssp             ESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred             ecCCCCEEEEeC-CccE-EEeCCCCc
Confidence            999988887775 4433 33444444

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.74  E-value=1.5  Score=45.73  Aligned_cols=159  Identities=16%  Similarity=0.318  Sum_probs=95.7

Q ss_pred             EeecCCceEEEEEecC--ccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEE--------ecCCCcEEEEeecCCCCc
Q 014007          171 ELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAV--------SQGVGSLVLVCPGLQKGQ  240 (432)
Q Consensus       171 ~~~~~~~v~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~d~~  240 (432)
                      .+.+...-..+-+-|.  ..++..|+.+.+|+.+++.....+.+..+.|-.+.+        .|.=+++++++   .--.
T Consensus        74 q~~~~~~~~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva---T~~e  150 (1311)
T KOG1900|consen   74 QFSNIECKTDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA---TPVE  150 (1311)
T ss_pred             HhcCcceeeeeccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec---ccce
Confidence            3333333444555553  334456999999999997777777766665544432        23334555544   2345


Q ss_pred             EEEEEccC----Cceee------eeccCCceeEEEEcCCCCEEEEEcCCCceEEE--EECCCC---c-e-----------
Q 014007          241 VRVEHYAS----KRTKF------IMAHDSRIACFALTQDGQLLATSSTKGTLVRI--FNTLDG---T-L-----------  293 (432)
Q Consensus       241 i~i~d~~~----~~~~~------~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v--wd~~~~---~-~-----------  293 (432)
                      |.++-+.-    .....      +......|.|+....+|+.+++|- ||. |+=  |...++   + |           
T Consensus       151 i~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls  228 (1311)
T KOG1900|consen  151 IVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGN-LYELVYQAEDGWFGSRCRKICLTKSVLS  228 (1311)
T ss_pred             EEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCC-EEEEEEeccCchhhcccccccCchhHHH
Confidence            55554322    22222      223356789999888998776655 445 442  222221   0 1           


Q ss_pred             -----EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          294 -----LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       294 -----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                           +-.+. +.+..+|..++.......|.+-++.|+|.+||+...
T Consensus       229 ~lvPs~~~~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  229 SLVPSLLSVP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             HhhhhhhcCC-CCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence                 11111 235679999999888889999999999999999873

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=93.53  E-value=7.7  Score=37.62  Aligned_cols=172  Identities=15%  Similarity=0.153  Sum_probs=104.4

Q ss_pred             CeEEEEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007          156 NKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (432)
                      +.|.+.| .+.+.+..+.   ....|.++.|-.+.-++++   =.-+.+.|+.+.+..+.+-..+-+-.+--++|-++..
T Consensus       304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~  382 (521)
T PF09826_consen  304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENH  382 (521)
T ss_pred             EEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCCe
Confidence            7789998 7777777777   5788999999999988885   3458888988754443332222233344567777777


Q ss_pred             EEEeecCCCC----------cEEEEEccCC----ceeee-ec---c----CCceeEEEEcCCCCEEEEEcC-------CC
Q 014007          230 VLVCPGLQKG----------QVRVEHYASK----RTKFI-MA---H----DSRIACFALTQDGQLLATSST-------KG  280 (432)
Q Consensus       230 ~~~~~g~~d~----------~i~i~d~~~~----~~~~~-~~---~----~~~i~~~~~sp~~~~l~~~~~-------dg  280 (432)
                      +|..+-..+.          +|.+||+...    ++... .+   .    ...-.++.|+++.++|+.--.       -.
T Consensus       383 LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~~~~~~~~  462 (521)
T PF09826_consen  383 LLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSSYGYFNFQ  462 (521)
T ss_pred             EEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEccCccccc
Confidence            7765322233          4677998761    11111 11   0    112357888888777765333       12


Q ss_pred             ceEEEEECC-CC--ceEEEEEeCCCcC-------ceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          281 TLVRIFNTL-DG--TLLQEVRRGADRA-------EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       281 ~~i~vwd~~-~~--~~~~~~~~~~~~~-------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      . +.++++. ..  +....+.   |..       .+....+.  +..|.+.+ ++.|+++|+++.
T Consensus       463 g-~~v~~i~~~~g~~~~g~i~---h~~~~~~~~~~~~R~lyi--~d~lYtvS-~~~i~~~~l~t~  520 (521)
T PF09826_consen  463 G-AYVFSIDPEDGFTLKGKIT---HPSPDYYYSYQIQRSLYI--GDTLYTVS-DNGIKAYDLNTL  520 (521)
T ss_pred             e-EEEEEEeCCCCeEEEEEEE---ccCcccccccceeEEEEE--CCEEEEEE-CCEEEEEehHhc
Confidence            3 7788876 22  2333333   333       25555553  34666665 567999998875

>PHA03098 kelch-like protein; Provisional

Probab=93.49  E-value=8.2  Score=37.81  Aligned_cols=188  Identities=13%  Similarity=0.157  Sum_probs=83.8

Q ss_pred             CCCCEEEEEc-CC------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007           95 QDHGCFAAGT-DH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        95 ~~~~~l~~~~-~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      .++.+++.|+ +.      .+..||..+.+......+.  ....-.++....+..++++|..+ ......+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI--YPRKNPGVTVFNNRIYVIGGIYN-SISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC--cccccceEEEECCEEEEEeCCCC-CEecceEEEEcCCCCc
Confidence            3455666665 21      2667776655543222222  11112223333445555555432 1112568889887664


Q ss_pred             eeE--EeecCCceEEEEEecCccEEEeC---------CeEEEEEcCCCeeeEEEeeccCCc-ceEEEecCCCcEEEEeec
Q 014007          168 CIG--ELSFRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       168 ~~~--~~~~~~~v~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g  235 (432)
                      -..  .+.....-.+++.. ++.+.+..         +.+..||+.+.+-.. +.....+. ...+... ++.+++. +|
T Consensus       370 W~~~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~-~~~iyv~-GG  445 (534)
T PHA03098        370 WREEPPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAIYH-DGKIYVI-GG  445 (534)
T ss_pred             eeeCCCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEEEE-CCEEEEE-CC
Confidence            322  12122111222333 33333321         357888887654322 11111111 1122223 3445544 34


Q ss_pred             CCC-------CcEEEEEccCCceeeeecc---CCceeEEEEcCCCCEEEEEcCC-----CceEEEEECCCCc
Q 014007          236 LQK-------GQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGT  292 (432)
Q Consensus       236 ~~d-------~~i~i~d~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~~~~  292 (432)
                      ...       ..+.+||..+..-..+...   ......+.+  ++++++.|+.+     .. |.+||..+.+
T Consensus       446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~  514 (534)
T PHA03098        446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINE-IEVYDDKTNT  514 (534)
T ss_pred             ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccce-eEEEeCCCCE
Confidence            221       2378888877544333211   111112222  67777777754     34 7788876654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.44  E-value=5.8  Score=35.93  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=42.4

Q ss_pred             ceeEEEEcCCCCEEEEEcCC------CceEEEEECCCCceEEEEEe-------------CCCcCceEEEEECCCCCEEEE
Q 014007          260 RIACFALTQDGQLLATSSTK------GTLVRIFNTLDGTLLQEVRR-------------GADRAEIYSLAFSSNAQWLAV  320 (432)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~d------g~~i~vwd~~~~~~~~~~~~-------------~~~~~~i~~~~~s~~~~~l~~  320 (432)
                      ...+|++.++|.++++.-.+      .. |+.++.. |+.+..+..             ...+...-+|+++|||+.|++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~-I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~  163 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPR-IRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA  163 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCE-EEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence            45688887788877776666      66 8888865 766555421             113357889999999996666


Q ss_pred             Ee
Q 014007          321 SS  322 (432)
Q Consensus       321 ~~  322 (432)
                      +.
T Consensus       164 ~~  165 (326)
T PF13449_consen  164 AM  165 (326)
T ss_pred             EE
Confidence            54

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.35  E-value=1.3  Score=35.82  Aligned_cols=30  Identities=10%  Similarity=0.050  Sum_probs=24.9

Q ss_pred             CCceEEEEccCC------CEEEEEecCCeEEEEEec
Q 014007          381 GSPYIVAFGHQK------NTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       381 ~~v~~~~~s~~~------~~l~~~~~dg~v~iw~~~  410 (432)
                      ..|..++|||-|      ..|++.+.+|.|.||.-.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            368899999943      479999999999998754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.34  E-value=2  Score=39.59  Aligned_cols=78  Identities=18%  Similarity=0.287  Sum_probs=53.6

Q ss_pred             ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEE--EEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ--EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       256 ~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      ...++|.++.||+|.+.||+--.+.+ |.+++....+...  ..+.......|....|+.+ .-+|..+..| +-+|-+.
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~-v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKT-VDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL  140 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCce-EEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence            34669999999999999999999999 9999873322211  1111112346899999865 5677666555 7777765


Q ss_pred             CCC
Q 014007          334 VNS  336 (432)
Q Consensus       334 ~~~  336 (432)
                      ..+
T Consensus       141 pek  143 (657)
T KOG2377|consen  141 PEK  143 (657)
T ss_pred             hhh
Confidence            543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.02  E-value=10  Score=37.52  Aligned_cols=193  Identities=12%  Similarity=0.119  Sum_probs=104.4

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEE--e--e-cCCceEEEE
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--L--S-FRSEVRSVK  182 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~--~--~-~~~~v~~~~  182 (432)
                      |+||++.. .... ..+  -....++.|.|+.+...++..- +     |++++|++. |+.+..  .  + ....|....
T Consensus        66 I~If~~sG-~lL~-~~~--w~~~~lI~mgWs~~eeLI~v~k-~-----g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~  134 (829)
T KOG2280|consen   66 IRIFNISG-QLLG-RIL--WKHGELIGMGWSDDEELICVQK-D-----GTVHVYGLL-GEFIESNSVGFESQMSDIVECR  134 (829)
T ss_pred             EEEEeccc-cchH-HHH--hcCCCeeeecccCCceEEEEec-c-----ceEEEeecc-hhhhcccccccccccCceeEEE
Confidence            77887643 2221 222  1333889999998876665543 3     999999964 333333  2  1 345566677


Q ss_pred             EecCccEEEe-CCeEEEEEcCCCeeeEEEee---ccCCcceEEEecCCCcEEEEeecCCCCc--EEEEEccC--Cceeee
Q 014007          183 LRRDRIIVVL-EQKIFVYNFADLKLLHQIET---IANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYAS--KRTKFI  254 (432)
Q Consensus       183 ~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~~~--~~~~~~  254 (432)
                      +..+|..+.. +|.+.+.+-...-.+..+..   ..-+-.+....+++....+.. + -+-.  ..++....  .....+
T Consensus       135 ~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll-~-v~~~v~~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  135 FFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILL-D-VDVAVGLHICQVEESRVQLHAL  212 (829)
T ss_pred             EecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEE-e-echhhhhcccceeccccccccc
Confidence            7778877664 66665544222112222221   111112333333333222211 0 0100  01111222  122222


Q ss_pred             eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC
Q 014007          255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (432)
Q Consensus       255 ~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  315 (432)
                      ......+..+..||+.++|+--...|. |.+-+....+++..+....+ .....++|.-+.
T Consensus       213 ~~~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  213 SWPNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDH-DPPKQMAWCGND  271 (829)
T ss_pred             CCCCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCC-CchHhceeecCC
Confidence            233456788999999999999999999 99988888888777774433 333366665443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.99  E-value=8.1  Score=36.35  Aligned_cols=199  Identities=13%  Similarity=0.078  Sum_probs=106.0

Q ss_pred             eEEEEEecCccEEEeCCeEEEEEcCCCeee------EEEeecc---CCcceEEEecCCCcEEEEeecCCCCcEEEEEccC
Q 014007          178 VRSVKLRRDRIIVVLEQKIFVYNFADLKLL------HQIETIA---NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (432)
Q Consensus       178 v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~  248 (432)
                      -..+.|..+..++.-++.|-+|.-.....+      ..+....   -...-+-++-+...+++. .|.....++-.|+..
T Consensus       421 ~L~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~-dg~~~~kLykmDIEr  499 (776)
T COG5167         421 HLVVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYL-DGGERDKLYKMDIER  499 (776)
T ss_pred             eEEEEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcceEEe-cCCCcccceeeeccc
Confidence            344555566666666888888865442211      1111110   011123333344444444 355666676677766


Q ss_pred             Ccee-eeeccCCceeEEEEcCCC--------CEEEEEcCCCceEEEEECC-CCceEEEEEeCCCcCceEEEEECC----C
Q 014007          249 KRTK-FIMAHDSRIACFALTQDG--------QLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSS----N  314 (432)
Q Consensus       249 ~~~~-~~~~~~~~i~~~~~sp~~--------~~l~~~~~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~~~s~----~  314 (432)
                      +++. .+..|...  -+.|.|+.        ..|+ |-.+.. |.-.|.+ .|..+....   ....++.-.||.    .
T Consensus       500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~s-vFrIDPR~~gNKi~v~e---sKdY~tKn~Fss~~tTe  572 (776)
T COG5167         500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYS-VFRIDPRARGNKIKVVE---SKDYKTKNKFSSGMTTE  572 (776)
T ss_pred             ceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccc-eEEecccccCCceeeee---ehhcccccccccccccc
Confidence            5543 44555443  56777743        2343 444444 4444544 233333222   122333333432    4


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCE
Q 014007          315 AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT  394 (432)
Q Consensus       315 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  394 (432)
                      ..++|+++..|.|++||.-..+...                                   .+.+-...|..+..+.+|++
T Consensus       573 sGyIa~as~kGDirLyDRig~rAKt-----------------------------------alP~lG~aIk~idvta~Gk~  617 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKRAKT-----------------------------------ALPGLGDAIKHIDVTANGKH  617 (776)
T ss_pred             CceEEEecCCCceeeehhhcchhhh-----------------------------------cCcccccceeeeEeecCCcE
Confidence            4589999999999999975443111                                   11222345777888899999


Q ss_pred             EEEEecCCeEEEEEecCCCCCcceEe
Q 014007          395 VVILGMDGSFYRCQFDPVNGGEMTQL  420 (432)
Q Consensus       395 l~~~~~dg~v~iw~~~~~~~~~~~~~  420 (432)
                      |++.|. ..+.+-++....|+...++
T Consensus       618 ilaTCk-~yllL~d~~ik~g~~aGr~  642 (776)
T COG5167         618 ILATCK-NYLLLTDVPIKYGQPAGRD  642 (776)
T ss_pred             EEEeec-ceEEEEecccccCCccccc
Confidence            887774 4666666655555444444

>PHA03098 kelch-like protein; Provisional

Probab=92.99  E-value=9.8  Score=37.28  Aligned_cols=193  Identities=15%  Similarity=0.170  Sum_probs=86.6

Q ss_pred             eeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEEeC--------CeEEEEEcCCCee
Q 014007          137 FRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVLE--------QKIFVYNFADLKL  206 (432)
Q Consensus       137 ~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~d--------~~i~i~d~~~~~~  206 (432)
                      ...+..++++|..........+..||..+.+-...-.  ....-.+++.. ++.+.+..        ..+..||..+.+-
T Consensus       292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            3444555555543211111368889987765422111  11111222222 34433321        2577888776542


Q ss_pred             eEEEeeccCCcceEEEecCCCcEEEEeecCC-C----CcEEEEEccCCceeeeeccCC--ceeEEEEcCCCCEEEEEcCC
Q 014007          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQ-K----GQVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSSTK  279 (432)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d----~~i~i~d~~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~d  279 (432)
                      .. ......+....+....++.+++. +|.. +    ..+..||..+..-........  .-.++. .-++++++.|+.+
T Consensus       371 ~~-~~~lp~~r~~~~~~~~~~~iYv~-GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~  447 (534)
T PHA03098        371 RE-EPPLIFPRYNPCVVNVNNLIYVI-GGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGIS  447 (534)
T ss_pred             ee-CCCcCcCCccceEEEECCEEEEE-CCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCcc
Confidence            21 11111111122222234455544 3421 1    457888887644333221111  111222 2356677777643


Q ss_pred             --------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007          280 --------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (432)
Q Consensus       280 --------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  336 (432)
                              .. +.+||..+.+-...-...........+.+  +++.++.|+.+     +.|.+||..+.+
T Consensus       448 ~~~~~~~~~~-v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        448 YIDNIKVYNI-VESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCCCCcccce-EEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                    23 78888877654321110000111122222  67777777653     468888887764

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.91  E-value=6.4  Score=34.89  Aligned_cols=206  Identities=10%  Similarity=0.064  Sum_probs=109.2

Q ss_pred             CeEEEEEcCCCCEEEE--Ec----C----C---cEEEEEcCCCeeEEEeeccc---CcceeEEEEeeeC------CeEEE
Q 014007           87 TLLHISFNQDHGCFAA--GT----D----H---GFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRC------NILAL  144 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~--~~----~----~---~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~------~~~~~  144 (432)
                      .|..+...+++++-+.  |.    .    .   .|.+||+.+.+......+..   .....+..+....      ++.+.
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            4778888888886554  32    1    1   28889999988765555541   1345666666654      24566


Q ss_pred             ecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEEec
Q 014007          145 VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (432)
Q Consensus       145 ~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (432)
                      ++-...     +.|.++|+.+++..+.+.+.     +...|+...+..+|...-|  ..+            +..++.++
T Consensus        82 ItD~~~-----~glIV~dl~~~~s~Rv~~~~-----~~~~p~~~~~~i~g~~~~~--~dg------------~~gial~~  137 (287)
T PF03022_consen   82 ITDSGG-----PGLIVYDLATGKSWRVLHNS-----FSPDPDAGPFTIGGESFQW--PDG------------IFGIALSP  137 (287)
T ss_dssp             EEETTT-----CEEEEEETTTTEEEEEETCG-----CTTS-SSEEEEETTEEEEE--TTS------------EEEEEE-T
T ss_pred             EeCCCc-----CcEEEEEccCCcEEEEecCC-----cceeccccceeccCceEec--CCC------------ccccccCC
Confidence            666655     78999999998876655531     1111222223334432222  122            23344433


Q ss_pred             ---CCCcEEEEeecCCCCcEEEEEccCC---------------ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEE
Q 014007          225 ---GVGSLVLVCPGLQKGQVRVEHYASK---------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (432)
Q Consensus       225 ---~~~~~~~~~~g~~d~~i~i~d~~~~---------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vw  286 (432)
                         +++.+++..-  ...  ++|.+.+.               .++.+-........++++++|.++++--..+. |..|
T Consensus       138 ~~~d~r~LYf~~l--ss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~a-I~~w  212 (287)
T PF03022_consen  138 ISPDGRWLYFHPL--SSR--KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNA-IGCW  212 (287)
T ss_dssp             TSTTS-EEEEEET--T-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTE-EEEE
T ss_pred             CCCCccEEEEEeC--CCC--cEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCe-EEEE
Confidence               5555554431  112  23333321               11222111245678889999998888888888 9999


Q ss_pred             ECCCC---ceEEEEEeCCC-cCceEEEEECC--CCCEEEEE
Q 014007          287 NTLDG---TLLQEVRRGAD-RAEIYSLAFSS--NAQWLAVS  321 (432)
Q Consensus       287 d~~~~---~~~~~~~~~~~-~~~i~~~~~s~--~~~~l~~~  321 (432)
                      +..+.   +....+..... -..+.++.+.+  +|.+.+..
T Consensus       213 ~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  213 DPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             ETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             eCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            97651   12223332222 35788899988  66655544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=92.89  E-value=5.4  Score=36.49  Aligned_cols=171  Identities=16%  Similarity=0.191  Sum_probs=92.4

Q ss_pred             eEEEEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007          157 KVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      .|++.| +.+..+..+.   ....|.++.|..|-.++++   -.-+.+.|+...+..+.+...+-+-.+--++|-|++.+
T Consensus       407 ~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~  485 (603)
T COG4880         407 AVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRL  485 (603)
T ss_pred             eeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCcE
Confidence            345555 3445555555   5678999999988888774   44577888877554444433222333456788888888


Q ss_pred             EEeecCCCCcEEE--EEccC----Cceeeee--cc----CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007          231 LVCPGLQKGQVRV--EHYAS----KRTKFIM--AH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (432)
Q Consensus       231 ~~~~g~~d~~i~i--~d~~~----~~~~~~~--~~----~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~  298 (432)
                      +.. |..+|.+++  ||+..    +++....  ..    -..-++..|.|...+++.-...+.  .|+-++.|..+..  
T Consensus       486 lGv-G~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~g--yif~iedg~kl~k--  560 (603)
T COG4880         486 LGV-GAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGG--YIFFIEDGSKLRK--  560 (603)
T ss_pred             EEe-ecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCcc--EEEEEecCceeee--
Confidence            875 556777654  77654    1111111  00    011134455555554444333443  3566667643322  


Q ss_pred             eCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          299 RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       299 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      ...++..+...-|-.|  +|...+. ..+.++|-.+.+
T Consensus       561 ~~e~k~na~RA~fi~d--ylY~vg~-~ev~~ldenswe  595 (603)
T COG4880         561 RAERKLNADRAFFIKD--YLYLVGG-NEVWKLDENSWE  595 (603)
T ss_pred             hhhhcccceeeEEecc--eEEEecc-ceeEEeccchHh
Confidence            2224455555556444  4444332 246666665554

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.51  E-value=0.019  Score=52.39  Aligned_cols=143  Identities=19%  Similarity=0.250  Sum_probs=94.0

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE----eCCeEEEEEcCC
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD  203 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~  203 (432)
                      +........|.+.+.-++.++.+     ..|..|| +.++.+.....++....++|..++..++    ..+.+++||+.+
T Consensus        33 alv~pi~~~w~~e~~nlavaca~-----tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~  106 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACAN-----TIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS  106 (615)
T ss_pred             hccccceeeEecCCCceehhhhh-----hHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence            33444455666665556655555     7888898 5666666666777888899998877665    278999999976


Q ss_pred             CeeeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec-cCCceeEEEEcCCCCEEEEEcCCCc
Q 014007          204 LKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGT  281 (432)
Q Consensus       204 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~  281 (432)
                      ... ++++ +....-.-..|++......+   |...|.+.+++....+.....+ |...++++++.+.+. .+.++.|..
T Consensus       107 eyt-qqLE~gg~~s~sll~wsKg~~el~i---g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~  181 (615)
T KOG2247|consen  107 EYT-QQLESGGTSSKSLLAWSKGTPELVI---GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT  181 (615)
T ss_pred             hhH-HHHhccCcchHHHHhhccCCccccc---cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence            432 1221 11222223567776665543   3478999999988855544445 999999999999874 445555543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.43  E-value=11  Score=37.20  Aligned_cols=170  Identities=13%  Similarity=0.157  Sum_probs=91.1

Q ss_pred             CCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC--CCcCceEEEEECCCC
Q 014007          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG--ADRAEIYSLAFSSNA  315 (432)
Q Consensus       238 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~--~~~~~i~~~~~s~~~  315 (432)
                      ...|+||++.+..+..+......+-.+.|+.+. .|++-..+|+ +++|++. |+.+.....+  .....|..+.|..+|
T Consensus        63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~-v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G  139 (829)
T KOG2280|consen   63 RPYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGT-VHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG  139 (829)
T ss_pred             ceeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccce-EEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence            356889998887776665555588899999766 4667789999 9999974 3333332111  112346666665566


Q ss_pred             CEEEEEeCCCeE-EEEEecCCC--CCCCCCCC----CCCCCCCCCCCceeEeecc----cceee---cceeeEEEEecCC
Q 014007          316 QWLAVSSDKGTV-HVFNLKVNS--GSARSEPR----STSDPTLPTSSLSFIKGVL----PKYFS---SEWSVAQFRLVEG  381 (432)
Q Consensus       316 ~~l~~~~~dg~i-~iwd~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~  381 (432)
                      -.+.+.  +|.+ .+-+.....  ..+..+..    ..+....+......+-.+.    +....   .......+....+
T Consensus       140 Vavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~  217 (829)
T KOG2280|consen  140 VAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS  217 (829)
T ss_pred             eEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence            444443  3443 333333322  11111110    1111122222222111111    11000   0000111222235


Q ss_pred             CceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      .+..+..||+.++|+-=+.+|.+.+-..|+.
T Consensus       218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  218 SVVKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             eEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence            6788999999999999999999988777664

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.85  E-value=11  Score=35.24  Aligned_cols=143  Identities=12%  Similarity=0.082  Sum_probs=83.9

Q ss_pred             CeEEEecCCCCCCCCCCeEEEEeCCCCc-----eeEEeecCCceEEEEEec-----CccEEE--eCCeEEEEEcCC--Ce
Q 014007          140 NILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR-----DRIIVV--LEQKIFVYNFAD--LK  205 (432)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~~~--~d~~i~i~d~~~--~~  205 (432)
                      +...++.|+..     |.++||+...+.     .+.+.+...+|..+..-+     +...++  .-..+.+|.+..  +.
T Consensus        36 ~~d~IivGS~~-----G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~  110 (418)
T PF14727_consen   36 GSDKIIVGSYS-----GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT  110 (418)
T ss_pred             CccEEEEeccc-----cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence            44567777777     999999986543     344455788998887643     333444  377888888732  11


Q ss_pred             -------eeEEEeeccCCcc--eEEEecCCC-c-EEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEE
Q 014007          206 -------LLHQIETIANPKG--LCAVSQGVG-S-LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA  274 (432)
Q Consensus       206 -------~~~~~~~~~~~~~--~~~~~~~~~-~-~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~  274 (432)
                             .+..+..|.-...  .++.-+-|. . .-++|.-+.||.+.+|+-+.-....+...---...+.|.+.-..++
T Consensus       111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfv  190 (418)
T PF14727_consen  111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFV  190 (418)
T ss_pred             cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEE
Confidence                   2223333322222  222222221 1 1122233589999999987755443333233334567778778888


Q ss_pred             EEcCCCceEEEEEC
Q 014007          275 TSSTKGTLVRIFNT  288 (432)
Q Consensus       275 ~~~~dg~~i~vwd~  288 (432)
                      +++.+.. |..|..
T Consensus       191 t~sss~~-l~~Yky  203 (418)
T PF14727_consen  191 TASSSWT-LECYKY  203 (418)
T ss_pred             EecCcee-EEEecH
Confidence            8888877 877754

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.80  E-value=1.4  Score=25.52  Aligned_cols=40  Identities=20%  Similarity=0.377  Sum_probs=28.2

Q ss_pred             CCCCEEEEEcC-CCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007          268 QDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (432)
Q Consensus       268 p~~~~l~~~~~-dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~  311 (432)
                      |++++|+++.. ++. |.++|..+++.+..+..+.   ....++|
T Consensus         1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg~---~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVGG---YPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECCC---CCceEEe
Confidence            57777776654 566 9999999999988888542   3344544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.72  E-value=15  Score=36.48  Aligned_cols=60  Identities=15%  Similarity=0.122  Sum_probs=38.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC
Q 014007           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  148 (432)
                      ...++++.-+|.|..++.+. |+.|++|+..+.+..  +...  ...+-..+.|...|++.++.+
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs--ki~~--~~~p~~nlv~tnhgl~~~tsd   74 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS--KICE--EAKPKENLVFTNHGLVTATSD   74 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchh--hhhh--hcCCccceeeeccceEEEecc
Confidence            34577888889999999888 555999998665543  1111  222333455666666666654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.71  E-value=1.3  Score=37.32  Aligned_cols=66  Identities=12%  Similarity=0.177  Sum_probs=44.0

Q ss_pred             eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe---------------ecCCceEEEEEecCccEEE--eC
Q 014007          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL---------------SFRSEVRSVKLRRDRIIVV--LE  193 (432)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~--~d  193 (432)
                      .+..+....+...+++..       |.+++||+.+++.+..-               .....|..+.++.+|.-++  ++
T Consensus        14 ~~~~l~~~~~~Ll~iT~~-------G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn   86 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSS-------GLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN   86 (219)
T ss_pred             ceEEEEeCCCEEEEEeCC-------CeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence            444455555555555554       99999999988754432               1235677788888887666  47


Q ss_pred             CeEEEEEcCC
Q 014007          194 QKIFVYNFAD  203 (432)
Q Consensus       194 ~~i~i~d~~~  203 (432)
                      |..+.|+..-
T Consensus        87 g~~y~y~~~L   96 (219)
T PF07569_consen   87 GDSYSYSPDL   96 (219)
T ss_pred             CCEEEecccc
Confidence            8888888643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.56  E-value=7.1  Score=39.40  Aligned_cols=91  Identities=13%  Similarity=0.093  Sum_probs=53.5

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCC-CCCCCCCCCCCCCCCCCCCCceeEeec-ccceeecceeeEEEEecCC
Q 014007          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN-SGSARSEPRSTSDPTLPTSSLSFIKGV-LPKYFSSEWSVAQFRLVEG  381 (432)
Q Consensus       304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  381 (432)
                      -.|..+.++|+|++|+..|..| |.|-.+... .....+         ..+......+.. +...      + ....+..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~---------~~g~~~i~Crt~~v~~~------~-~~~~~~~  147 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEF---------EDGKKEINCRTVPVDER------F-FTSNSSL  147 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccc---------cCCCcceeEEEEEechh------h-ccCCCCc
Confidence            4688999999999999998766 556555431 100000         000000001000 0000      0 0112335


Q ss_pred             CceEEEEccC---CCEEEEEecCCeEEEEEecC
Q 014007          382 SPYIVAFGHQ---KNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       382 ~v~~~~~s~~---~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .|..+.|+|.   +..|++-+.|+.+++|++..
T Consensus       148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  148 EIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             eEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            6889999995   58999999999999999953

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.26  E-value=5  Score=37.38  Aligned_cols=42  Identities=7%  Similarity=-0.085  Sum_probs=31.8

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeE
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREI  119 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~  119 (432)
                      ...+......+.+|..+|++++.|+.++-| |.|+|+..+..+
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv  342 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV  342 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh
Confidence            345556677899999999998888876555 999998765443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.25  E-value=2.9  Score=43.10  Aligned_cols=114  Identities=10%  Similarity=-0.021  Sum_probs=72.2

Q ss_pred             CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce------eeee------ccCCceeEEEEcCCCC-EEEEEcCCCce
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT------KFIM------AHDSRIACFALTQDGQ-LLATSSTKGTL  282 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------~~~~------~~~~~i~~~~~sp~~~-~l~~~~~dg~~  282 (432)
                      ++..+...+|+....+..+. .+-.|..||++.-..      ..+.      .......++.|.|.-. ..+.+..|+. 
T Consensus       102 pi~~~v~~~D~t~s~v~~ts-ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls-  179 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTS-NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS-  179 (1405)
T ss_pred             cceEEEeccCCceEEEEEec-CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc-
Confidence            34455566665554444433 456788899886211      1111      1233456788888532 3456677888 


Q ss_pred             EEEEECCCCc-eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          283 VRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       283 i~vwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      |++..+.... ....+.   .....++++|+|.|+.++.|-..|++.-|...-
T Consensus       180 l~V~~~~~~~~~v~s~p---~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP---VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hhhhhhhhhhhhhcccC---cccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence            8888764332 222333   346789999999999999999999998886543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.20  E-value=1.9  Score=39.68  Aligned_cols=164  Identities=13%  Similarity=0.140  Sum_probs=95.4

Q ss_pred             eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee--e-eccCC----cee-EEEEcCCCCEEEEEcC
Q 014007          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF--I-MAHDS----RIA-CFALTQDGQLLATSST  278 (432)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~-~~~~~----~i~-~~~~sp~~~~l~~~~~  278 (432)
                      +..+......+..+-+.|||+.+++.+ |   ..+.++++.+.....  + ....+    .|+ .+..-..|.-|.+++.
T Consensus       213 i~~L~~~~~~v~qllL~Pdg~~LYv~~-g---~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         213 IRLLSVPFSDVSQLLLTPDGKTLYVRT-G---SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             hhhcCCCccchHhhEECCCCCEEEEec-C---CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence            333444556677788999999998875 3   678888887744322  1 11111    122 1222335667888999


Q ss_pred             CCceEEEE-ECCCCc-----eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007          279 KGTLVRIF-NTLDGT-----LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (432)
Q Consensus       279 dg~~i~vw-d~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (432)
                      ||. |.-| |.+.+.     .++.++.  ....+.-+.-..+.+-+++-+..|++.++.-...+.+.             
T Consensus       289 dG~-vsQWFdvr~~~~p~l~h~R~f~l--~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-------------  352 (733)
T COG4590         289 DGL-VSQWFDVRRDGQPHLNHIRNFKL--APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-------------  352 (733)
T ss_pred             CCc-eeeeeeeecCCCCcceeeecccc--CcccceeeccccccceEEEEcCCCceeeeecccCccee-------------
Confidence            998 7655 655432     1222221  11334444433345567777788888877665544221             


Q ss_pred             CCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCC
Q 014007          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG  414 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~  414 (432)
                                             +..--..+..+++||.+.+|++-. .|.++++.++...-
T Consensus       353 -----------------------~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P  390 (733)
T COG4590         353 -----------------------FERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNP  390 (733)
T ss_pred             -----------------------hhhhhcCcceeeeCcccchheeec-CCceEEEEecCCCC
Confidence                                   000112356789999999987543 57789988876543

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.08  E-value=4.4  Score=38.31  Aligned_cols=31  Identities=23%  Similarity=0.235  Sum_probs=25.3

Q ss_pred             CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          381 GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       381 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      ..|..++..+..+.|++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            4488899988889999999999999999977

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PHA02790 Kelch-like protein; Provisional

Probab=90.84  E-value=16  Score=35.22  Aligned_cols=171  Identities=11%  Similarity=0.049  Sum_probs=77.9

Q ss_pred             CeEEEEeCCCCceeEE--eecCCceEEEEEecCccEEEeC-----CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          156 NKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      ..+..||..+++-...  +.....-.+++. -++.+.+..     ..+..||..+++-.. +.....+....+..--++.
T Consensus       287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~  364 (480)
T PHA02790        287 NNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNV  364 (480)
T ss_pred             CeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCE
Confidence            4678888877643222  221111122222 344444432     357788876543221 1111122222222233345


Q ss_pred             EEEEeecCC--CCcEEEEEccCCceeeeeccCCc--eeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC
Q 014007          229 LVLVCPGLQ--KGQVRVEHYASKRTKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (432)
Q Consensus       229 ~~~~~~g~~--d~~i~i~d~~~~~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~  304 (432)
                      ++++ +|..  ...+..||.++..-.....-..+  -.+++ .-+|++.+.|+   . +.+||..+.+-...-.......
T Consensus       365 IYvi-GG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~GG---~-~e~ydp~~~~W~~~~~m~~~r~  438 (480)
T PHA02790        365 IYVI-GGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVGR---N-AEFYCESSNTWTLIDDPIYPRD  438 (480)
T ss_pred             EEEe-cCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEECC---c-eEEecCCCCcEeEcCCCCCCcc
Confidence            5544 3421  23567788776433322111111  11221 23666666663   5 7788887664432211110111


Q ss_pred             ceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007          305 EIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  336 (432)
                      ....+.  -+|+..+.|+.+     ..+..||..+.+
T Consensus       439 ~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        439 NPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            222222  367777887754     357788887765

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.79  E-value=1.4  Score=40.48  Aligned_cols=159  Identities=17%  Similarity=0.176  Sum_probs=89.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcc---eeEE-EEeeeCCeEEEecCCCCCCCCCC
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG---IGVV-EMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      +......|..+-..|||+.|.+-+...+.++++++......+......+   ..|. .+..-..+..+...+.|     |
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d-----G  290 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED-----G  290 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC-----C
Confidence            4455677888999999999888877788899887654433222221111   1111 11112344555566666     8


Q ss_pred             eEEEE-eCCCC-c----eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCC
Q 014007          157 KVMIW-DDHQS-R----CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (432)
Q Consensus       157 ~v~iw-d~~~~-~----~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (432)
                      .|.-| |+..+ .    .++.++ ...++..+.-..+.+-+++   +|++.++.....+.+. ++........++++|.+
T Consensus       291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~  369 (733)
T COG4590         291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQ  369 (733)
T ss_pred             ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCccc
Confidence            88777 44332 1    223333 2233433332223333332   6777777644333322 22223356679999999


Q ss_pred             CcEEEEeecCCCCcEEEEEccCC
Q 014007          227 GSLVLVCPGLQKGQVRVEHYASK  249 (432)
Q Consensus       227 ~~~~~~~~g~~d~~i~i~d~~~~  249 (432)
                      +++++    ...|.++++.+++.
T Consensus       370 ~~Ll~----e~~gki~~~~l~Nr  388 (733)
T COG4590         370 AYLLS----EDQGKIRLAQLENR  388 (733)
T ss_pred             chhee----ecCCceEEEEecCC
Confidence            87653    25688999988773

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=90.73  E-value=12  Score=33.44  Aligned_cols=73  Identities=19%  Similarity=0.355  Sum_probs=53.8

Q ss_pred             ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-C--ceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-A--EIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-~--~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      -|++|...++|.+|+++-.-.. |.+.|-++|+.+..+.+.... -  .-...+|-.|-+++-.+..++.|.|||=.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             EeeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            3677788889999999988888 999999999999888653110 0  11235555566666666788999999874

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=90.17  E-value=18  Score=34.77  Aligned_cols=137  Identities=9%  Similarity=0.005  Sum_probs=68.9

Q ss_pred             CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCc---eeEEEEcCCC
Q 014007          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR---IACFALTQDG  270 (432)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~---i~~~~~sp~~  270 (432)
                      +...++|. .|.....+.........+..-++|..+  +..   ...+..+|+.++.+.........   =+.+...|+|
T Consensus       128 ~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll--~~~---~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nG  201 (477)
T PF05935_consen  128 SYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLL--IGS---GNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNG  201 (477)
T ss_dssp             EEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EE--EEE---BTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred             ceEEEECC-CccEEEEEccCccccceeeEcCCCCEE--Eec---CCceEEEcCCCCEEEeeecCCcccccccccEECCCC
Confidence            46777774 566665554433332225556666533  322   27888888877655443322211   2467778999


Q ss_pred             CEEEEEcC-------------CCceEEEEECCCCceEEEEEeCCCc-------------------------CceEEEEEC
Q 014007          271 QLLATSST-------------KGTLVRIFNTLDGTLLQEVRRGADR-------------------------AEIYSLAFS  312 (432)
Q Consensus       271 ~~l~~~~~-------------dg~~i~vwd~~~~~~~~~~~~~~~~-------------------------~~i~~~~~s  312 (432)
                      ++|+.+..             ... |..+| .+|+.+..+....|-                         .-+.++.+.
T Consensus       202 n~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd  279 (477)
T PF05935_consen  202 NLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD  279 (477)
T ss_dssp             -EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred             CEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence            99888772             112 55566 667666655431110                         137889998


Q ss_pred             C-CCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          313 S-NAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       313 ~-~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      + ++.+|+++-.-..|...|.++++..
T Consensus       280 ~~dd~iivSsR~~s~V~~Id~~t~~i~  306 (477)
T PF05935_consen  280 PSDDSIIVSSRHQSAVIKIDYRTGKIK  306 (477)
T ss_dssp             TTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred             CCCCeEEEEcCcceEEEEEECCCCcEE
Confidence            8 6666666666668888887777643

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=90.14  E-value=11  Score=38.18  Aligned_cols=143  Identities=15%  Similarity=0.272  Sum_probs=85.8

Q ss_pred             EEEeCCeEEEEEcCCCeeeEEEeeccCCcceEE-EecCC-------CcEEEEeecCCCCcEEEEEc----cCCceeeeec
Q 014007          189 IVVLEQKIFVYNFADLKLLHQIETIANPKGLCA-VSQGV-------GSLVLVCPGLQKGQVRVEHY----ASKRTKFIMA  256 (432)
Q Consensus       189 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~g~~d~~i~i~d~----~~~~~~~~~~  256 (432)
                      ++..|+.+.+|+...+...+.+....+.+..+. +.|..       .++++++   ....+.++-+    +++++..+..
T Consensus        97 WiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vA---T~~e~~ilgvs~d~~T~Els~fnT  173 (1263)
T COG5308          97 WITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVA---TEKEVMILGVSKDTKTGELSLFNT  173 (1263)
T ss_pred             EEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhh---hhheeeEEEEEeccccceeEEEec
Confidence            444699999999997766665554444443332 23333       2333333   2344444432    3344433322


Q ss_pred             ------cCCceeEEEEcCCCCEEEEEcCCCceEEEEECC----C----Cc-------------eEE-EEEeCCCcCceEE
Q 014007          257 ------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL----D----GT-------------LLQ-EVRRGADRAEIYS  308 (432)
Q Consensus       257 ------~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~----~----~~-------------~~~-~~~~~~~~~~i~~  308 (432)
                            ..-.|.|+.-+.+|+.+++|..|-   .+|.+.    +    .+             .+. .+..+.+...|..
T Consensus       174 gl~vsvqGinV~civs~e~GrIFf~g~~d~---nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Q  250 (1263)
T COG5308         174 GLVVSVQGINVRCIVSEEDGRIFFGGENDP---NVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQ  250 (1263)
T ss_pred             ceEEeccCceeEEEEeccCCcEEEecCCCC---CeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhh
Confidence                  235688888888999998888873   355442    1    01             111 1111234467889


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       309 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      ++.......|.+-+....|+-|.+.....
T Consensus       251 l~vDqsRg~ly~Lr~kS~Vray~itkngl  279 (1263)
T COG5308         251 LAVDQSRGLLYVLRKKSAVRAYSITKNGL  279 (1263)
T ss_pred             eeecccccceeeecccceeeeEeeecccc
Confidence            99988878888888899999999877653

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.06  E-value=8.9  Score=36.22  Aligned_cols=78  Identities=14%  Similarity=0.229  Sum_probs=53.6

Q ss_pred             ceeEEEEcCCCCEEEEEcCCCceEEEEEC----------CCCceEEEEEe---------CCCcCceEEEEECCCC---CE
Q 014007          260 RIACFALTQDGQLLATSSTKGTLVRIFNT----------LDGTLLQEVRR---------GADRAEIYSLAFSSNA---QW  317 (432)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~----------~~~~~~~~~~~---------~~~~~~i~~~~~s~~~---~~  317 (432)
                      .|..+..++.|..++-.+.+|.  .|-.+          ++|+.....+.         ....-.+...+|+|+.   ..
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi--~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGL--MVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCCceEEEecCCee--EEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            5778889999999999999995  33333          24433222111         1111357788999975   56


Q ss_pred             EEEEeCCCeEEEEEecCCCCCC
Q 014007          318 LAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       318 l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      |..-+.|+.|++||+...+.+.
T Consensus       183 L~iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             EEEEecCcEEEEEecCCcchhh
Confidence            7777889999999998877553

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=90.04  E-value=20  Score=34.92  Aligned_cols=103  Identities=13%  Similarity=0.114  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCCcEEEEEcCC-CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC------------------CCC
Q 014007           95 QDHGCFAAGTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ------------------YPL  155 (432)
Q Consensus        95 ~~~~~l~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~------------------~~~  155 (432)
                      .||++|.+..++.|.|++..+ .+......+.  -...+..+-.+.+.+.+++......                  ...
T Consensus        20 TDG~yIY~v~~~~l~Iida~p~~~~~~~s~I~--~~~~~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (521)
T PF09826_consen   20 TDGEYIYVVSGGRLYIIDAYPAEEMKVVSRID--LDGSPQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSS   97 (521)
T ss_pred             ECCCEEEEEeCCEEEEEECCCchhceEEEEEe--cCCChhheEEcCCEEEEEEeccccccccccccccccccccccCCce
Confidence            389999999988899999843 2222223332  1112666666666666665332100                  112


Q ss_pred             CeEEEEeCCCC---ceeEEeecCCceEEEEEecCccEEEeCCeEEEE
Q 014007          156 NKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVY  199 (432)
Q Consensus       156 ~~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~  199 (432)
                      -.+.+||+...   +.+.++...+...+.....+..++++...+.++
T Consensus        98 t~i~vYDIsD~~~P~~~~~~~~~G~yvsSR~ig~~vy~Vt~~~~~~~  144 (521)
T PF09826_consen   98 TKITVYDISDPSNPKLLREIEIEGSYVSSRKIGDYVYLVTNSYPNYY  144 (521)
T ss_pred             eEEEEEECCCCCCceEEEEEEeeeEEEeEEEECCEEEEEEecCCccc
Confidence            46888888654   345555556666666666666666666655555

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.52  E-value=17  Score=33.56  Aligned_cols=152  Identities=14%  Similarity=0.082  Sum_probs=80.2

Q ss_pred             CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCC--ceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccC
Q 014007          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIAN  215 (432)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~  215 (432)
                      ++..+++. .+     +.++.+|..+|+.+.......  .+..-..-.++.....  ++.+...|..+++.+........
T Consensus       111 ~G~i~~g~-~~-----g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~  184 (370)
T COG1520         111 DGKIYVGS-WD-----GKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP  184 (370)
T ss_pred             CCeEEEec-cc-----ceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc
Confidence            66655544 44     789999988999998888444  2222233345555553  68899889888887766543221


Q ss_pred             -Cc-ceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCcee-----EEEEcCC-----CCEEEEEcCCCceE
Q 014007          216 -PK-GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA-----CFALTQD-----GQLLATSSTKGTLV  283 (432)
Q Consensus       216 -~~-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~-----~~~~sp~-----~~~l~~~~~dg~~i  283 (432)
                       .. ..-........+++...+. ++.+.-.|...+...--..+...+.     .......     +.-+..++.++. +
T Consensus       185 ~~~~~~~~~~~~~~~vy~~~~~~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~-~  262 (370)
T COG1520         185 LSLSIYGSPAIASGTVYVGSDGY-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGK-L  262 (370)
T ss_pred             cccccccCceeecceEEEecCCC-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCe-E
Confidence             00 0000112222333332111 4455556665543322111000000     0001111     122356777787 8


Q ss_pred             EEEECCCCceEEEEEe
Q 014007          284 RIFNTLDGTLLQEVRR  299 (432)
Q Consensus       284 ~vwd~~~~~~~~~~~~  299 (432)
                      ...|..+++.+..+..
T Consensus       263 ~~l~~~~G~~~W~~~~  278 (370)
T COG1520         263 LCLDADTGELIWSFPA  278 (370)
T ss_pred             EEEEcCCCceEEEEec
Confidence            8889999998888874

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=89.36  E-value=15  Score=36.93  Aligned_cols=111  Identities=9%  Similarity=0.125  Sum_probs=56.7

Q ss_pred             eEEEEEcCCCCEEEEEcC-Cc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007           88 LLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (432)
Q Consensus        88 v~~~~~s~~~~~l~~~~~-~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~  165 (432)
                      -.++-.+..|...++|-. +| +-+=|...  ....+..++-....+..++.+.+...+.+-.       |.|+-|-+..
T Consensus       187 fHSvfl~~kgqvY~cGhG~GGRlG~gdeq~--~~iPkrV~gL~gh~~~qisvs~~HslvLT~~-------g~Vys~GlN~  257 (1267)
T KOG0783|consen  187 FHSVFLTEKGQVYVCGHGAGGRLGFGDEQY--NFIPKRVPGLIGHKVIQISVSHTHSLVLTKF-------GSVYSWGLNG  257 (1267)
T ss_pred             ceeeEecCCCcEEEeccCCCCccCcCcccc--cccccccccccccceEEEEeecceeEEEeec-------ceEEEeecCc
Confidence            345555667776666653 33 32222111  1111222211344566777777777777654       8899998765


Q ss_pred             CceeEEee-----------------cCCceEEEEEecCccEEEeCCeEEEEEcCCCeee
Q 014007          166 SRCIGELS-----------------FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLL  207 (432)
Q Consensus       166 ~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  207 (432)
                      ...+....                 ....|..++--....++..+..|+.|-++.|+.-
T Consensus       258 ~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~~VY~wGlN~GQlG  316 (1267)
T KOG0783|consen  258 SHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDTDVYSWGLNNGQLG  316 (1267)
T ss_pred             ccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecceEEEecccCceec
Confidence            43332211                 1112222222222233335888999998887653

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=89.18  E-value=11  Score=35.53  Aligned_cols=31  Identities=19%  Similarity=0.386  Sum_probs=25.4

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      ..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3499999999889999999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.81  E-value=11  Score=39.67  Aligned_cols=175  Identities=11%  Similarity=0.143  Sum_probs=94.3

Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEE--------cCCCCEEEEEcCCCceEEEEECC
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFAL--------TQDGQLLATSSTKGTLVRIFNTL  289 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~--------sp~~~~l~~~~~dg~~i~vwd~~  289 (432)
                      .+-+-|.=+..++.    .|+.+.+|++.+ +....+.+-...|..|..        -|.=++|+.-+.--. |.++-+.
T Consensus        83 ~mGiFpeI~RaWiT----iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~e-i~ilgV~  157 (1311)
T KOG1900|consen   83 DMGIFPEIGRAWIT----IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVE-IVILGVS  157 (1311)
T ss_pred             eeccchhhcceEEE----eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccce-EEEEEEE
Confidence            34455554555543    589999999988 566666666666666543        222233333333333 5554322


Q ss_pred             ----CCce---EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeec
Q 014007          290 ----DGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV  362 (432)
Q Consensus       290 ----~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (432)
                          ++..   ...+........|.++....+|+.+.+|- ||  .+|.+.-...-.-+..    .+..-..+.+.+...
T Consensus       158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~----rc~Kiclt~s~ls~l  230 (1311)
T KOG1900|consen  158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGS----RCRKICLTKSVLSSL  230 (1311)
T ss_pred             eccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhc----ccccccCchhHHHHh
Confidence                2211   11122223346789999888998887764 55  5565543221100000    000000000011112


Q ss_pred             ccceeecceeeEEEE-ecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          363 LPKYFSSEWSVAQFR-LVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       363 ~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      +|.       +..+. .+.++|..++....-+.|.+-+..|+|.+|++...
T Consensus       231 vPs-------~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  231 VPS-------LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             hhh-------hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence            221       11222 45678999999888889999999999999999663

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=88.48  E-value=28  Score=34.56  Aligned_cols=157  Identities=13%  Similarity=0.129  Sum_probs=82.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEee--------eCCeEEEecC-CCCCCCC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF--------RCNILALVGG-GPDPQYP  154 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~s~-~~d~~~~  154 (432)
                      .+.|-.|.|.++++.+++...+| |.+|+.+.........+...+...+.--.|        ..+..++++. ..+    
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~----  204 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS----  204 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC----
Confidence            67899999999999888877666 999998332222111222122222221122        1234444444 211    


Q ss_pred             CCeEEEEeC-CCCceeEEee----cCCceEEEEEe-cCccEEE-eCCeEEEEEcCCCeeeEEEeec---cCC-cceEEEe
Q 014007          155 LNKVMIWDD-HQSRCIGELS----FRSEVRSVKLR-RDRIIVV-LEQKIFVYNFADLKLLHQIETI---ANP-KGLCAVS  223 (432)
Q Consensus       155 ~~~v~iwd~-~~~~~~~~~~----~~~~v~~~~~~-~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~---~~~-~~~~~~~  223 (432)
                      .-..+++.+ .....+.++.    +........|. .+|.+.. .+++|.+|++...+..+++...   ... -..+.+.
T Consensus       205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~  284 (670)
T PF10395_consen  205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK  284 (670)
T ss_pred             cEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence            035677776 1222222221    22222222222 2455444 6889999999888777766543   111 1234443


Q ss_pred             c-CCCcEEEEeecCCCCcEEEEEccCC
Q 014007          224 Q-GVGSLVLVCPGLQKGQVRVEHYASK  249 (432)
Q Consensus       224 ~-~~~~~~~~~~g~~d~~i~i~d~~~~  249 (432)
                      + ..++++ .+   .+..|++.|+.-.
T Consensus       285 ~~s~nRvL-Ls---~~nkIyLld~~~~  307 (670)
T PF10395_consen  285 PPSPNRVL-LS---VNNKIYLLDLKFE  307 (670)
T ss_pred             cCCCCeEE-EE---cCCEEEEEeehhh
Confidence            3 334444 43   4689999998753

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.30  E-value=0.062  Score=49.28  Aligned_cols=112  Identities=15%  Similarity=0.225  Sum_probs=73.1

Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEE-EcCCCceEEEEECCCCceEEEE
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLDGTLLQEV  297 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~-~~~dg~~i~vwd~~~~~~~~~~  297 (432)
                      ...|.+.+..+++++   .+..+..||-........ ...+....++|..+|..++. +-..+. +.+||+.+......-
T Consensus        39 ~~~w~~e~~nlavac---a~tiv~~YD~agq~~le~-n~tg~aldm~wDkegdvlavlAek~~p-iylwd~n~eytqqLE  113 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVAC---ANTIVIYYDKAGQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGP-IYLWDVNSEYTQQLE  113 (615)
T ss_pred             eeeEecCCCceehhh---hhhHHHhhhhhcceeccc-CCchhHhhhhhccccchhhhhhhcCCC-eeechhhhhhHHHHh
Confidence            456777777766654   567777787554433222 23445567888888776554 455667 999998764322211


Q ss_pred             EeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       298 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      .++.+....  +.|++.+..++.+...|.+.|++..+.+.
T Consensus       114 ~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~  151 (615)
T KOG2247|consen  114 SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR  151 (615)
T ss_pred             ccCcchHHH--HhhccCCccccccccccceEEEeccchhh
Confidence            122222222  78999999999999999999999887763

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=88.26  E-value=29  Score=34.46  Aligned_cols=238  Identities=16%  Similarity=0.106  Sum_probs=118.4

Q ss_pred             EEEEcCCCCEEEEEcCCc-EEEEEcC-CCeeEEEeecccCcceeEEEEeee---C-CeEEEecCCCCCCCCCCeEEEEeC
Q 014007           90 HISFNQDHGCFAAGTDHG-FRIYNCD-PFREIFRRDFERGGGIGVVEMLFR---C-NILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~~~~-i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~---~-~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      +..++|+...+-.|=.+. |.-|-+. +.+..+...+.  ....|.+|...   . ...++++-...     ++-++-.+
T Consensus        32 s~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~--pt~iV~~~dV~~~~~~~~~~~~glt~r-----Kk~~ll~i  104 (670)
T PF10395_consen   32 SDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPIS--PTTIVECCDVLEKSDGKKLYCVGLTER-----KKFKLLLI  104 (670)
T ss_pred             ecccCCCCceEEEEeccchhhheecCCCcceeEeeccC--cCceEEEEEeEecCCCcEEEEEEEeeC-----CeeEEEEE
Confidence            336778877776665444 5555443 33444444443  44444444432   1 22344433333     33333332


Q ss_pred             CCC-----------ce--eEEeecCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeE--EEeecc-CCcceEEEec
Q 014007          164 HQS-----------RC--IGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLH--QIETIA-NPKGLCAVSQ  224 (432)
Q Consensus       164 ~~~-----------~~--~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~--~~~~~~-~~~~~~~~~~  224 (432)
                      ..+           +.  ...++....|.++.+..++..++   -+|.|.+||...+....  .+.... ..+..-.|..
T Consensus       105 ~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~  184 (670)
T PF10395_consen  105 ERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVN  184 (670)
T ss_pred             EccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhc
Confidence            222           22  22334688999999998776665   29999999994322211  111111 1010001111


Q ss_pred             -----C-CCcEEEEee-cCCCCcEEEEEc--cCCceeeee---ccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCC
Q 014007          225 -----G-VGSLVLVCP-GLQKGQVRVEHY--ASKRTKFIM---AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDG  291 (432)
Q Consensus       225 -----~-~~~~~~~~~-g~~d~~i~i~d~--~~~~~~~~~---~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~  291 (432)
                           + .+.+++++. .+..-..+++.+  ....+..+.   .+........|.- +|.+.--  .+++ |.+|++...
T Consensus       185 ~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~-i~~ysip~f  261 (670)
T PF10395_consen  185 DFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKT-ISSYSIPNF  261 (670)
T ss_pred             ccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCE-EEEEEcCCc
Confidence                 2 234444443 223455677777  333333332   2222223333332 5543333  5667 999999998


Q ss_pred             ceEEEEEeCC--Cc--CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          292 TLLQEVRRGA--DR--AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       292 ~~~~~~~~~~--~~--~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      +..+++....  ..  ..+.++.--...+.|++  .++.|++.|+.-...+.
T Consensus       262 ~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs--~~nkIyLld~~~~siLs  311 (670)
T PF10395_consen  262 QIQKTISLPSIIDKESDDLVSLKPPSPNRVLLS--VNNKIYLLDLKFESILS  311 (670)
T ss_pred             eEEEEEEechhhccccccceEeecCCCCeEEEE--cCCEEEEEeehhhhhhh
Confidence            8888776431  11  12334432223344444  36789999997655443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=88.24  E-value=15  Score=33.41  Aligned_cols=157  Identities=11%  Similarity=0.068  Sum_probs=84.5

Q ss_pred             CCceEEEEEecCc-cEEEeCCeEEEEEcCC-CeeeEEEeeccC-----CcceEEEecCC--------------CcEEEEe
Q 014007          175 RSEVRSVKLRRDR-IIVVLEQKIFVYNFAD-LKLLHQIETIAN-----PKGLCAVSQGV--------------GSLVLVC  233 (432)
Q Consensus       175 ~~~v~~~~~~~~~-~~~~~d~~i~i~d~~~-~~~~~~~~~~~~-----~~~~~~~~~~~--------------~~~~~~~  233 (432)
                      .+....++|...+ .++++|...-+|.+.- ++....+.....     -...+.++++|              +.++.+.
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l  193 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAAL  193 (376)
T ss_pred             cCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeee
Confidence            4677888998876 6777787766666542 111111111100     00122222211              1233334


Q ss_pred             ecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCC-ceEEEEECCCCce--EEEEEeCCCcCceEEEE
Q 014007          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTL--LQEVRRGADRAEIYSLA  310 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~~i~vwd~~~~~~--~~~~~~~~~~~~i~~~~  310 (432)
                      .|..+|.+.-||..++..+.+...-.-.+.++.|||+.+++.+-.-- ..-+.| ++..+.  ...|..+ -++..-.|.
T Consensus       194 ~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw-i~g~k~gt~EvFa~~-LPG~PDNIR  271 (376)
T KOG1520|consen  194 EGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW-IKGPKAGTSEVFAEG-LPGYPDNIR  271 (376)
T ss_pred             cCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE-ecCCccCchhhHhhc-CCCCCccee
Confidence            45578889999988888777766666678899999999887764332 214566 332221  0111110 223445567


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecC
Q 014007          311 FSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       311 ~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      .+++|.+.+.-....+. +|++-.
T Consensus       272 ~~~~G~fWVal~~~~~~-~~~~~~  294 (376)
T KOG1520|consen  272 RDSTGHFWVALHSKRST-LWRLLM  294 (376)
T ss_pred             ECCCCCEEEEEecccch-HHHhhh
Confidence            77888765543322222 555543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.17  E-value=21  Score=32.83  Aligned_cols=186  Identities=13%  Similarity=0.139  Sum_probs=102.4

Q ss_pred             CCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEec----CccE----EEe---C--CeEEEEEcCC--
Q 014007          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR----DRII----VVL---E--QKIFVYNFAD--  203 (432)
Q Consensus       139 ~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~----~~~---d--~~i~i~d~~~--  203 (432)
                      |....+++....     +-+.+||+ .|+.++.+. .+.++.+....    ++..    +++   +  ..|++|.+..  
T Consensus        66 p~kSlIigTdK~-----~GL~VYdL-~Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~  138 (381)
T PF02333_consen   66 PAKSLIIGTDKK-----GGLYVYDL-DGKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT  138 (381)
T ss_dssp             GGG-EEEEEETT-----TEEEEEET-TS-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred             cccceEEEEeCC-----CCEEEEcC-CCcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence            445566666666     88999996 466666665 34445444322    2322    223   2  4689997753  


Q ss_pred             CeeeEEEee-------ccCCcceEEEe--cCCCcEEEEeecCCCCcEEEEEccC---C-----ceeeeeccCCceeEEEE
Q 014007          204 LKLLHQIET-------IANPKGLCAVS--QGVGSLVLVCPGLQKGQVRVEHYAS---K-----RTKFIMAHDSRIACFAL  266 (432)
Q Consensus       204 ~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~g~~d~~i~i~d~~~---~-----~~~~~~~~~~~i~~~~~  266 (432)
                      +. +..+..       ....+..+|+-  +....+++.. ...+|.+..|.+..   +     .++.+. -...+..+..
T Consensus       139 g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v-~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCVV  215 (381)
T PF02333_consen  139 GE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFV-NGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCVV  215 (381)
T ss_dssp             TE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEE-EETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEE
T ss_pred             Cc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEE-ecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEEE
Confidence            33 333321       11223455553  3333333333 34789888887753   2     233443 3457888888


Q ss_pred             cCCCCEEEEEcCCCceEEEEECCCC-----ceEEEEEeCCCcCceEEEEEC--CCC-CEEEEEe-CCCeEEEEEecCC
Q 014007          267 TQDGQLLATSSTKGTLVRIFNTLDG-----TLLQEVRRGADRAEIYSLAFS--SNA-QWLAVSS-DKGTVHVFNLKVN  335 (432)
Q Consensus       267 sp~~~~l~~~~~dg~~i~vwd~~~~-----~~~~~~~~~~~~~~i~~~~~s--~~~-~~l~~~~-~dg~i~iwd~~~~  335 (432)
                      .....+|+.+-++.. |+-|+.+..     +.+....+......|-.|++-  .++ .||++.+ .+++..||+.+..
T Consensus       216 DDe~g~LYvgEE~~G-IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  216 DDETGRLYVGEEDVG-IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             ETTTTEEEEEETTTE-EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             ecccCCEEEecCccE-EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            888889999999988 888887622     222222222233567777764  343 3555444 7889999998764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.97  E-value=1.7  Score=24.80  Aligned_cols=27  Identities=19%  Similarity=0.187  Sum_probs=18.8

Q ss_pred             CCceEEEEccCCCEEEEEec-C--CeEEEE
Q 014007          381 GSPYIVAFGHQKNTVVILGM-D--GSFYRC  407 (432)
Q Consensus       381 ~~v~~~~~s~~~~~l~~~~~-d--g~v~iw  407 (432)
                      +.-...+|||||+.|+.++. +  |...||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34567899999998886555 5  666666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.50  E-value=11  Score=28.71  Aligned_cols=80  Identities=16%  Similarity=0.245  Sum_probs=49.3

Q ss_pred             eeCCeEEEecCCCCCCCCCCeEEEEeCCCC--------ceeEEeecCCceEEEEEec-------CccEEEeCCeEEEEEc
Q 014007          137 FRCNILALVGGGPDPQYPLNKVMIWDDHQS--------RCIGELSFRSEVRSVKLRR-------DRIIVVLEQKIFVYNF  201 (432)
Q Consensus       137 ~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~--------~~~~~~~~~~~v~~~~~~~-------~~~~~~~d~~i~i~d~  201 (432)
                      |......|+.+..-     ++|.|++....        ..+..+.....|++|+-.+       |-.++.+...|..||+
T Consensus         6 fDG~~pcL~~aT~~-----gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV   80 (136)
T PF14781_consen    6 FDGVHPCLACATTG-----GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV   80 (136)
T ss_pred             eCCCceeEEEEecC-----CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence            44444455555554     89999986633        3556667788888886443       2223336889999999


Q ss_pred             CCCeeeEEEeeccCCcceEEE
Q 014007          202 ADLKLLHQIETIANPKGLCAV  222 (432)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~  222 (432)
                      ....-+..- .-.+.++++.+
T Consensus        81 ~~N~d~Fyk-e~~DGvn~i~~  100 (136)
T PF14781_consen   81 ENNSDLFYK-EVPDGVNAIVI  100 (136)
T ss_pred             ccCchhhhh-hCccceeEEEE
Confidence            876554332 22345555555

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.41  E-value=7.5  Score=31.39  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=24.8

Q ss_pred             CceeEEEEcCCC------CEEEEEcCCCceEEEEECC
Q 014007          259 SRIACFALTQDG------QLLATSSTKGTLVRIFNTL  289 (432)
Q Consensus       259 ~~i~~~~~sp~~------~~l~~~~~dg~~i~vwd~~  289 (432)
                      ..+.+++|||.|      -+|++.+.++. |.||.-.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecC
Confidence            478999999954      47889999999 9999754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.26  E-value=6.5  Score=34.57  Aligned_cols=52  Identities=15%  Similarity=0.286  Sum_probs=36.5

Q ss_pred             EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe------CCCeEEEEEecCCC
Q 014007          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS------DKGTVHVFNLKVNS  336 (432)
Q Consensus       283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------~dg~i~iwd~~~~~  336 (432)
                      |++||..+.+-...-. . -.+.|++|.|..+.++++.|.      ....+..||..+..
T Consensus        18 lC~yd~~~~qW~~~g~-~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen   18 LCLYDTDNSQWSSPGN-G-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             EEEEECCCCEeecCCC-C-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence            9999976665433222 2 447899999987777777664      34568888888765

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=87.23  E-value=21  Score=31.69  Aligned_cols=136  Identities=11%  Similarity=0.156  Sum_probs=80.4

Q ss_pred             eEEEEEcCCCeeeEEEeeccC------CcceEEEecCCC----cEEEEeecCCCCcEEEEEccCCceeeeec--------
Q 014007          195 KIFVYNFADLKLLHQIETIAN------PKGLCAVSQGVG----SLVLVCPGLQKGQVRVEHYASKRTKFIMA--------  256 (432)
Q Consensus       195 ~i~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------  256 (432)
                      +|.+||+.+++.++.+.....      ....+.+.....    ..+.++ ....+.|.|+|+.++....+..        
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt-D~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT-DSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE-ETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe-CCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            688999999998888755432      223455555322    333333 3345689999998855433321        


Q ss_pred             ------------cCCceeEEEEcC---CCCEEEEEcCCCceEEEEECCC-----C---------ceEEEEEeCCCcCceE
Q 014007          257 ------------HDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTLD-----G---------TLLQEVRRGADRAEIY  307 (432)
Q Consensus       257 ------------~~~~i~~~~~sp---~~~~l~~~~~dg~~i~vwd~~~-----~---------~~~~~~~~~~~~~~i~  307 (432)
                                  ....+..++.+|   +|+.|.-+...+.  ++|.+.+     .         +.++.+-.  ......
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~--k~~~s~  189 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDLGD--KGSQSD  189 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----SEC
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceeccc--cCCCCc
Confidence                        122366677765   6677777766654  5554432     1         11222221  113556


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      .++++++|.++++--..+.|..|+..+.
T Consensus       190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~  217 (287)
T PF03022_consen  190 GMAIDPNGNLYFTDVEQNAIGCWDPDGP  217 (287)
T ss_dssp             EEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred             eEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence            7889999998888889999999998863

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.86  E-value=41  Score=34.73  Aligned_cols=114  Identities=15%  Similarity=0.140  Sum_probs=71.1

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEcCCCee----EEEeecc-cC-------cceeEEEEeeeCCeEEEecCCC
Q 014007           84 PPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFRE----IFRRDFE-RG-------GGIGVVEMLFRCNILALVGGGP  149 (432)
Q Consensus        84 ~~~~v~~~~~s~~-~~~l~~~~~~~-i~iw~~~~~~~----~~~~~~~-~~-------~~~~v~~~~~~~~~~~~~s~~~  149 (432)
                      ...+...++|+|. .+.||+-+..| ..||++.....    ....... .+       ....-..+.|.++...++.++.
T Consensus       144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r  223 (765)
T PF10214_consen  144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR  223 (765)
T ss_pred             CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence            3456778999985 45788888666 99999921111    1111100 00       1122236677777666666655


Q ss_pred             CCCCCCCeEEEEeCCCCceeE---EeecCCceEEEEEecC---ccEEEeCCeEEEEEcCC
Q 014007          150 DPQYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRD---RIIVVLEQKIFVYNFAD  203 (432)
Q Consensus       150 d~~~~~~~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~---~~~~~~d~~i~i~d~~~  203 (432)
                            ..+.++|+++.....   .......|.++.-++.   ..++.+...|...++..
T Consensus       224 ------~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  224 ------SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             ------CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence                  689999998875533   2225677888888876   33444688888888876

These proteins are found in fungi.

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=86.75  E-value=34  Score=33.70  Aligned_cols=240  Identities=13%  Similarity=0.055  Sum_probs=124.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCC----c--EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           87 TLLHISFNQDHGCFAAGTDH----G--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~----~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      .+-.++.|||.+++|.+-|.    .  +++-|+.++..... .    -......++|.+++..+.-...++.-.+.+|..
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d-~----i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~  204 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPD-E----ITNTSGSFAWAADGKTLFYTRLDENHRPDKVWR  204 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccch-h----hcccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence            45677889999999887522    1  88888887765421 1    222345667777665554443332223345555


Q ss_pred             EeCCC--CceeEEeecCC--ceEEEEEecCccEEEe------CCeEEEEEcCCCeee-EEEeeccCCcceEEEecCCCcE
Q 014007          161 WDDHQ--SRCIGELSFRS--EVRSVKLRRDRIIVVL------EQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       161 wd~~~--~~~~~~~~~~~--~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  229 (432)
                      ..+.+  ..-...++...  -..++.-+.+..+++.      .+.+++.+....... ..+..-...+ .......++.+
T Consensus       205 h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~-eY~~eh~~d~f  283 (682)
T COG1770         205 HRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGV-EYSVEHGGDRF  283 (682)
T ss_pred             EecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCc-EEeeeecCcEE
Confidence            55554  22233333233  3334444455666652      346888887764332 1221111122 22333445555


Q ss_pred             EEEeecCCCC-cEEEEEccC----CceeeeeccCCceeEEEEcCCCCEEEEEcCCCc--eEEEEECCCCceEEEEEeCCC
Q 014007          230 VLVCPGLQKG-QVRVEHYAS----KRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVRRGAD  302 (432)
Q Consensus       230 ~~~~~g~~d~-~i~i~d~~~----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~--~i~vwd~~~~~~~~~~~~~~~  302 (432)
                      ++.+  ..+| ..+|+....    ..-+.+..|...+.--.|+--..+|+....++.  .|++++.++++... +... .
T Consensus       284 ~i~s--N~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~-i~f~-~  359 (682)
T COG1770         284 YILS--NADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG-IAFD-D  359 (682)
T ss_pred             EEEe--cCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee-EEec-c
Confidence            5554  2334 555655443    223455677777766666666667766555432  17888887776543 3321 2


Q ss_pred             cCceEEEEECCC--CCE--EEEEe--CCCeEEEEEecCCC
Q 014007          303 RAEIYSLAFSSN--AQW--LAVSS--DKGTVHVFNLKVNS  336 (432)
Q Consensus       303 ~~~i~~~~~s~~--~~~--l~~~~--~dg~i~iwd~~~~~  336 (432)
                      ......+..+++  ...  +-..+  .-.++.=+|+.+++
T Consensus       360 ~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~e  399 (682)
T COG1770         360 EAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGE  399 (682)
T ss_pred             hhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCc
Confidence            233344444432  221  22222  34467777777766

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=86.51  E-value=6  Score=27.75  Aligned_cols=44  Identities=18%  Similarity=0.166  Sum_probs=31.9

Q ss_pred             cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (432)
                      +..+|.+..||..+++...+...-...+.|++++|+.+|+.+-.
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence            34568899999999888777665667889999999997766543

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.45  E-value=20  Score=34.08  Aligned_cols=92  Identities=13%  Similarity=0.018  Sum_probs=51.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  384 (432)
                      .|..+..++.|..++-.+.+|.+.++=.+....-..+         ..+......+.     +.-...+.+-. ..=.+.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~---------eDgk~~v~CRt-----~~i~~~~ftss-~~ltl~  169 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEF---------EDGKSTVNCRT-----TPVAERFFTSS-TSLTLK  169 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCcccee---------cCCCceEEEEe-----ecccceeeccC-Cceeee
Confidence            5778888999999999999996665542222111000         00000001100     00000011111 112467


Q ss_pred             EEEEccCC---CEEEEEecCCeEEEEEecC
Q 014007          385 IVAFGHQK---NTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       385 ~~~~s~~~---~~l~~~~~dg~v~iw~~~~  411 (432)
                      .++|+|+.   ..|..-+.|..|++|++..
T Consensus       170 Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  170 QAAWHPSSILDPHLVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             eccccCCccCCceEEEEecCcEEEEEecCC
Confidence            78999975   6788899999999999855

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=86.39  E-value=1  Score=44.99  Aligned_cols=103  Identities=8%  Similarity=0.029  Sum_probs=52.0

Q ss_pred             ccCCCCCCCeEEEEEcCC-CCEEEEEcC-CcEEEEEcCCCeeEE-----Eeecc--cCcceeEEEEeeeCCeEEEecCCC
Q 014007           79 STSSSPPPTLLHISFNQD-HGCFAAGTD-HGFRIYNCDPFREIF-----RRDFE--RGGGIGVVEMLFRCNILALVGGGP  149 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~i~iw~~~~~~~~~-----~~~~~--~~~~~~v~~~~~~~~~~~~~s~~~  149 (432)
                      ....+-++.|-.+.|... ...+.  .+ +.+.+|+++-.+...     .....  +.....|..+-|-++..++..+..
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~  203 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK  203 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence            344555677777777431 11121  22 237788875322111     11111  112233444445556666777777


Q ss_pred             CCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccE
Q 014007          150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII  189 (432)
Q Consensus       150 d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  189 (432)
                      +     +.|++.++.+... ..+. |...+..++|...|..
T Consensus       204 ~-----~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~  238 (1283)
T KOG1916|consen  204 G-----GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVL  238 (1283)
T ss_pred             C-----CceeEeeechHHH-HHHHhcCCCcccHHHHhhchh
Confidence            6     8888877655432 2222 7777776666555543

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.35  E-value=31  Score=32.79  Aligned_cols=57  Identities=18%  Similarity=0.217  Sum_probs=37.7

Q ss_pred             CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce--EEEEE---eCCCcCceEEEEECCCC
Q 014007          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVR---RGADRAEIYSLAFSSNA  315 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~--~~~~~---~~~~~~~i~~~~~s~~~  315 (432)
                      -.....|+|.|||++|++--..|. |++++..++..  +..+.   ..........|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~-I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGK-ILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCE-EEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            445789999999987776555688 99998655432  11111   11124678999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.99  E-value=57  Score=34.69  Aligned_cols=74  Identities=7%  Similarity=-0.005  Sum_probs=45.0

Q ss_pred             eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       255 ~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      .-+...+.+..+...... +.+...+. +-+|+.........+...       ...++.++..++++-.||.+.+||...
T Consensus       195 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~h~Dgs~~fWd~s~  265 (993)
T KOG1983|consen  195 SLIEYESLQVLYYSPTKI-LIGFNRGL-VVIKDRASKYVQSAYLPN-------GQLESRDGSHFVSYHTDGSYAFWDVSS  265 (993)
T ss_pred             cccccccceeeeecCCCc-ceeeeeee-eeehhcccccchhhcccc-------cccCccCCceEEEEEecCCEEeeecCC
Confidence            344555666555444443 34444555 667765444333333321       111178899999999999999999998


Q ss_pred             CCC
Q 014007          335 NSG  337 (432)
Q Consensus       335 ~~~  337 (432)
                      ++.
T Consensus       266 g~~  268 (993)
T KOG1983|consen  266 GKL  268 (993)
T ss_pred             Cce
Confidence            754

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.86  E-value=8.5  Score=37.86  Aligned_cols=38  Identities=29%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             ceeEEEEcC----CCCEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007          260 RIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (432)
Q Consensus       260 ~i~~~~~sp----~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~  298 (432)
                      ....++++.    +..+|++.+.|+. +|+||+.+++++....
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATID  257 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEec
Confidence            455666666    6789999999999 9999999999977764

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.72  E-value=5.4  Score=39.24  Aligned_cols=35  Identities=29%  Similarity=0.296  Sum_probs=27.1

Q ss_pred             ceEEEEECC----CCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          305 EIYSLAFSS----NAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       305 ~i~~~~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      ....++++.    +..+|++.+.|+++|+||+.+++++.
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence            456666666    67899999999999999999999743

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=83.61  E-value=61  Score=33.87  Aligned_cols=170  Identities=14%  Similarity=0.175  Sum_probs=100.0

Q ss_pred             eEEEEeCCCCceeEEeecCC-----ceEEEEEecCcc--EEE--------------eCCeEEEEEcC-CCeeeEEEeecc
Q 014007          157 KVMIWDDHQSRCIGELSFRS-----EVRSVKLRRDRI--IVV--------------LEQKIFVYNFA-DLKLLHQIETIA  214 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~--~~~--------------~d~~i~i~d~~-~~~~~~~~~~~~  214 (432)
                      .|++.|..+++.+..+.+..     .+..+.|+....  +++              ++|.++.|++- .++.+.-+....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            58999988888777776332     355566665332  222              14557777754 344333332222


Q ss_pred             CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee---eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC-C
Q 014007          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-D  290 (432)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~---~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~-~  290 (432)
                      -+-...++.|..+.+ ++.   ....+++||+..+++..   +..-...|..+++  .+..+++|..... +.++-.+ .
T Consensus       934 ~~~~v~Ai~~f~~~~-Lag---vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~ 1006 (1205)
T KOG1898|consen  934 IPGPVGAICPFQGRV-LAG---VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRE 1006 (1205)
T ss_pred             CCccceEEeccCCEE-EEe---cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecC
Confidence            233356777877744 343   34899999998854422   2234567788877  5667888876655 5543332 3


Q ss_pred             CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      .+.+..+-....+..|+.+.+- |-..+|.+..=|.+.+-.+..
T Consensus      1007 ~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1007 DNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence            4445555543344556766664 445677777777777666543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=83.46  E-value=28  Score=29.88  Aligned_cols=83  Identities=18%  Similarity=0.127  Sum_probs=48.9

Q ss_pred             EEEEEccCCceeeeec-cCCceeEEEEcCCCCEEEEEcCC---CceEEEEECCC--CceE-EEEEe-CCCcCceEEEEEC
Q 014007          241 VRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLD--GTLL-QEVRR-GADRAEIYSLAFS  312 (432)
Q Consensus       241 i~i~d~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~--~~~~-~~~~~-~~~~~~i~~~~~s  312 (432)
                      -.+||+.+...+.+.. ......+-.+-+||++|.+|+..   .. +++++..+  ..+- .+... -...-.--+...-
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~-ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKA-IRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccc-eEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            3578988877765543 22333445677899999998763   24 88887543  1111 11110 0122344455556


Q ss_pred             CCCCEEEEEeCC
Q 014007          313 SNAQWLAVSSDK  324 (432)
Q Consensus       313 ~~~~~l~~~~~d  324 (432)
                      +||+.|+.|+.+
T Consensus       127 ~DG~vlIvGG~~  138 (243)
T PF07250_consen  127 PDGRVLIVGGSN  138 (243)
T ss_pred             CCCCEEEEeCcC
Confidence            799999998876

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.60  E-value=6.1  Score=22.37  Aligned_cols=31  Identities=19%  Similarity=0.318  Sum_probs=19.9

Q ss_pred             eccCCceeEEEEcCCCCEEEEEcCC---CceEEEE
Q 014007          255 MAHDSRIACFALTQDGQLLATSSTK---GTLVRIF  286 (432)
Q Consensus       255 ~~~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vw  286 (432)
                      ......-....|+|||+.|+-.+..   |. -.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence            3445567789999999988766544   44 4554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=82.48  E-value=64  Score=33.34  Aligned_cols=157  Identities=11%  Similarity=0.049  Sum_probs=93.0

Q ss_pred             cCCceEEEEEe---c----CccEEE--eCCeEEEEEcC------C---------CeeeEEEe---eccCCcceEEEecCC
Q 014007          174 FRSEVRSVKLR---R----DRIIVV--LEQKIFVYNFA------D---------LKLLHQIE---TIANPKGLCAVSQGV  226 (432)
Q Consensus       174 ~~~~v~~~~~~---~----~~~~~~--~d~~i~i~d~~------~---------~~~~~~~~---~~~~~~~~~~~~~~~  226 (432)
                      ...+|..|+|.   .    ...+++  ....+.|+...      .         ..++..+.   ....+...++|+|..
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            45666667666   2    223555  36677777611      1         12333333   233456679999876


Q ss_pred             CcEEEEeecCCCCcEEEEEccC------CceeeeeccC----------CceeEEEEcCCCCEEEEEcCCCceEEEEECCC
Q 014007          227 GSLVLVCPGLQKGQVRVEHYAS------KRTKFIMAHD----------SRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (432)
Q Consensus       227 ~~~~~~~~g~~d~~i~i~d~~~------~~~~~~~~~~----------~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~  290 (432)
                      ...+.+.  ...|...||++..      ........+.          ..-..+.|.++-+.|+.++...  +.++|+.+
T Consensus       158 ~~q~AiV--D~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~--l~~~d~~~  233 (765)
T PF10214_consen  158 QRQFAIV--DEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK--LMLIDFES  233 (765)
T ss_pred             cceEEEE--eccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc--eEEEECCC
Confidence            5544333  4789999999932      1111111111          2234788988888888887664  89999988


Q ss_pred             CceEEEEEeCCCcCceEEEEECCC--CCEEEEEeCCCeEEEEEecCCC
Q 014007          291 GTLLQEVRRGADRAEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      ......+........|..+.-+++  +..|+-.  ...|...++....
T Consensus       234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~~  279 (765)
T PF10214_consen  234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSSS  279 (765)
T ss_pred             CCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCCC
Confidence            766432332224467999998887  3333333  2568888887743

These proteins are found in fungi.

>PLN02153 epithiospecifier protein

Probab=82.04  E-value=40  Score=30.71  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=14.8

Q ss_pred             CCCEEEEEcCC-----------CceEEEEECCCCc
Q 014007          269 DGQLLATSSTK-----------GTLVRIFNTLDGT  292 (432)
Q Consensus       269 ~~~~l~~~~~d-----------g~~i~vwd~~~~~  292 (432)
                      ++++++.|+.+           .. |.+||..+.+
T Consensus       137 ~~~iyv~GG~~~~~~~~~~~~~~~-v~~yd~~~~~  170 (341)
T PLN02153        137 ENHVYVFGGVSKGGLMKTPERFRT-IEAYNIADGK  170 (341)
T ss_pred             CCEEEEECCccCCCccCCCcccce-EEEEECCCCe
Confidence            56666776653           24 7788887654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=81.84  E-value=26  Score=34.91  Aligned_cols=68  Identities=4%  Similarity=0.019  Sum_probs=48.9

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eCCeEEEEE
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYN  200 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d  200 (432)
                      ....++++.-+|.+..++.+..|     |.|++|++......+......+-..+.|...|.+.+ +|..+.-|.
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d-----~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQD-----GSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWK   81 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecC-----CcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheee
Confidence            34456777788999999999999     999999987655433333445556677777777777 466666675

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=81.68  E-value=16  Score=25.71  Aligned_cols=40  Identities=8%  Similarity=0.057  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      +|.+..||..+++....+.+. ..-+.+++++|+..++++-
T Consensus        36 ~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   36 TGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             -EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEE
T ss_pred             CcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEe
Confidence            678999999888765444443 3445799999999877654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E

Probab=81.30  E-value=3.6  Score=26.12  Aligned_cols=30  Identities=17%  Similarity=0.298  Sum_probs=22.6

Q ss_pred             CCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          391 QKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       391 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                      ..+.++..+.+|.|+||.+|+.+++ +.+++
T Consensus        28 ~~N~Fav~~e~~~iKIfkyd~~tNe-i~L~K   57 (63)
T PF14157_consen   28 EHNHFAVVDEDGQIKIFKYDEDTNE-ITLKK   57 (63)
T ss_dssp             STTEEEEE-ETTEEEEEEEETTTTE-EEEEE
T ss_pred             cCCEEEEEecCCeEEEEEeCCCCCe-EEEEE
Confidence            4567888899999999999998764 44444

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=81.18  E-value=55  Score=31.68  Aligned_cols=279  Identities=13%  Similarity=0.064  Sum_probs=132.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      ....|..+.+.-.|. |-+|+++|+..||..+++.......  .....|..+.-+-++...+...       .-|++.+.
T Consensus       163 ~d~~V~aLv~D~~g~-lWvgT~dGL~~fd~~~gkalql~s~--~~dk~I~al~~d~qg~LWVGTd-------qGv~~~e~  232 (671)
T COG3292         163 KDTPVVALVFDANGR-LWVGTPDGLSYFDAGRGKALQLASP--PLDKAINALIADVQGRLWVGTD-------QGVYLQEA  232 (671)
T ss_pred             cCccceeeeeeccCc-EEEecCCcceEEccccceEEEcCCC--cchhhHHHHHHHhcCcEEEEec-------cceEEEch
Confidence            456888999998885 5567788888888766554422221  1225566665565666655544       45777775


Q ss_pred             CCCceeEEee--cCCceEEEEEecCccE-EEeCCeEEEEEcCCCeeeEEE-eecc--CCcceEEEecCCCcEEEEeecCC
Q 014007          164 HQSRCIGELS--FRSEVRSVKLRRDRII-VVLEQKIFVYNFADLKLLHQI-ETIA--NPKGLCAVSQGVGSLVLVCPGLQ  237 (432)
Q Consensus       164 ~~~~~~~~~~--~~~~v~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~~  237 (432)
                      +..+......  ..+.|..+.-..+|.+ +.+++-+-.+........... +.+.  ..+..+....+|+ +.+   +..
T Consensus       233 ~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv---~t~  308 (671)
T COG3292         233 EGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWV---GTY  308 (671)
T ss_pred             hhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-Eee---ecc
Confidence            4422111111  2344444444444443 334443444444433222111 1111  2233344444443 222   234


Q ss_pred             CCcEEEEEccCCceeeeeccCCc-eeEEEEcC--CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC
Q 014007          238 KGQVRVEHYASKRTKFIMAHDSR-IACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (432)
Q Consensus       238 d~~i~i~d~~~~~~~~~~~~~~~-i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  314 (432)
                      ++.+++-+-+-.....+...++. +...+..|  .+..+.-....|. +.+-+-.+|..++..... ....|+.+++..+
T Consensus       309 ~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~-L~van~stG~~v~sv~q~-Rg~nit~~~~d~~  386 (671)
T COG3292         309 GGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGE-LMVANGSTGELVRSVHQL-RGMNITTTLEDSR  386 (671)
T ss_pred             CceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccce-EEEecCCCCcEEEEeeec-cccccchhhhccC
Confidence            45555433222222222211111 11112222  1222222233333 455555566665554322 2345777777765


Q ss_pred             CCEEEEEeCCCeEEEEEecC-CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC
Q 014007          315 AQWLAVSSDKGTVHVFNLKV-NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN  393 (432)
Q Consensus       315 ~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  393 (432)
                      |+. -.|+..+-+..|+-++ +......                                  -..+.+.|.++-=.|+++
T Consensus       387 g~l-Wlgs~q~GLsrl~n~n~~avlde~----------------------------------agl~ss~V~aived~dns  431 (671)
T COG3292         387 GRL-WLGSMQNGLSRLDNKNEWAVLDED----------------------------------AGLPSSEVSAIVEDPDNS  431 (671)
T ss_pred             CcE-EEEecccchhhhccCCcccccccc----------------------------------cCCcccceeeeeecCCCC
Confidence            554 3444443355566555 1110000                                  011234577777778877


Q ss_pred             EEEEEecCCeEEEEEecCCCCCcc
Q 014007          394 TVVILGMDGSFYRCQFDPVNGGEM  417 (432)
Q Consensus       394 ~l~~~~~dg~v~iw~~~~~~~~~~  417 (432)
                       |..|+.+|.+++   +++.++-.
T Consensus       432 -LWIGTs~Glvk~---~pe~~~v~  451 (671)
T COG3292         432 -LWIGTSGGLVKR---DPESGRVL  451 (671)
T ss_pred             -EEEeccCCeEec---Cccccchh
Confidence             778999998884   66554433

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=80.87  E-value=8.5  Score=26.81  Aligned_cols=31  Identities=23%  Similarity=0.334  Sum_probs=25.6

Q ss_pred             CceEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007          304 AEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (432)
Q Consensus       304 ~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~  334 (432)
                      .....|.++|++++|..++ ..+.|++|....
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            4568899999999988776 678999998764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=80.20  E-value=37  Score=29.14  Aligned_cols=142  Identities=9%  Similarity=0.018  Sum_probs=72.8

Q ss_pred             EEEEEcCCCeeeEEEeeccC-CcceEEEecCCCcEEEEeecCCC--CcEEEEEccC-Cceeee------eccCCceeEEE
Q 014007          196 IFVYNFADLKLLHQIETIAN-PKGLCAVSQGVGSLVLVCPGLQK--GQVRVEHYAS-KRTKFI------MAHDSRIACFA  265 (432)
Q Consensus       196 i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d--~~i~i~d~~~-~~~~~~------~~~~~~i~~~~  265 (432)
                      -.+||+.+++.. .+....+ ....-.+-+||+  ++.++|..+  ..+++++... ......      .....+--.+.
T Consensus        48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~--ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~  124 (243)
T PF07250_consen   48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGR--LLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT  124 (243)
T ss_pred             EEEEecCCCcEE-eccCCCCCcccCcCCCCCCC--EEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence            457888876542 2222221 112234567775  334455544  3477776543 111111      11222333445


Q ss_pred             EcCCCCEEEEEcCCCceEEEEECCC-CceEEEE--Ee----CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          266 LTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEV--RR----GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       266 ~sp~~~~l~~~~~dg~~i~vwd~~~-~~~~~~~--~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      .-|||+.|+.|+.+.....+|.-.. ......+  ..    .....---.+...|||++|+.+..+  -.|||..+.+.+
T Consensus       125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~  202 (243)
T PF07250_consen  125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVV  202 (243)
T ss_pred             ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEE
Confidence            5679999999988764255665422 1111111  10    0011223356677999999888765  456788877654


Q ss_pred             CCCC
Q 014007          339 ARSE  342 (432)
Q Consensus       339 ~~~~  342 (432)
                      +.++
T Consensus       203 ~~lP  206 (243)
T PF07250_consen  203 RTLP  206 (243)
T ss_pred             eeCC
Confidence            4443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	432
4av8_A	339	Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length		5e-27
3vu4_A	355	Crystal Structure Of Kluyvelomyces Marxianus Hsv2 L		1e-26
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-04

>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length = 339

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 132/292 (45%), Gaps = 35/292 (11%)
Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQD  C    T   F IYN  P + I  ++    G I    ML R N +A V    +  
Sbjct: 22  FNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAGTI---RMLHRTNYIAFVSTKKELL 78
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
           +      IWDD + + I  +   + V+ + L R+ I+V     I ++ F +    ++I  
Sbjct: 79  H------IWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNP--WNKITE 130
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAHDSRIACFAL 266
                G+C  + G   L++       GQ+ V    +   +       + AH + +    L
Sbjct: 131 DIKFGGVCEFANG---LLVYSNEFNLGQIHVTRLQTDAEQVVGKGVLVKAHANPVKMVRL 187
Query: 267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT 326
            + G ++AT S  GTL+R+F T +G L++E RRG DR  I  + +S +   LAV SDK T
Sbjct: 188 NRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLAVVSDKWT 247
Query: 327 VHVFNLKVNSGSARSEPRXXXXXXXXXXXXXFIKGVLPKYFSSEWSVAQFRL 378
           +HVF +  ++ + R   +                 +  KYF SEWS+  F+L
Sbjct: 248 LHVFEVFNDAENKRHVLK---------------DWINIKYFQSEWSICNFKL 284

>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2 Length = 355

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 134/304 (44%), Gaps = 48/304 (15%)
Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQD  C    T   F IYN  P   I  ++      +  V ML R N +A V G  +  
Sbjct: 27  FNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH---LSKVRMLHRTNYVAFVTGVKEV- 82
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
                V IWDD + + +  +   + V+ + L R+ I+V     I V+ F +     +I  
Sbjct: 83  -----VHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNP--WKRITD 135
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----------------RTKFIM 255
                G+C  S G   L++       GQ+ +    S                  +   I 
Sbjct: 136 DIRFGGVCEFSNG---LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192
Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315
           AH + I    L +   ++AT S  GT++R+F T DG L++E RRG DRA++  + +S++ 
Sbjct: 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG 252
Query: 316 QWLAVSSDKGTVHVFNLKVNSGSARSEPRXXXXXXXXXXXXXFIKGVLP-KYFSSEWSVA 374
             LAV SDK T+HVF +  +  + R                  +KG +  KYF SEWS+ 
Sbjct: 253 SKLAVVSDKWTLHVFEIFNDQDNKRHA----------------LKGWINMKYFQSEWSLC 296
Query: 375 QFRL 378
            F+L
Sbjct: 297 NFKL 300

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR 303
            H   K    + AH S +   A + DGQ +A++S   T V+++N  +G LLQ +      
Sbjct: 2   SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHS 57
Query: 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFN 331
           + ++ +AFS + Q +A +SD  TV ++N
Sbjct: 58  SSVWGVAFSPDGQTIASASDDKTVKLWN 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	432
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.76
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.72
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.65
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.64
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.63
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.63
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.6
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.58
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.58
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.57
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.56
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.54
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.52
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.51
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.5
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.45
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.44
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.44
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.43
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.42
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.42
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.37
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.36
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.35
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.34
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.33
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.33
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.32
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.27
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.26
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.26
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.25
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.21
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.21
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.2
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.2
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.17
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.15
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.11
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.11
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.1
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.08
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.07
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.05
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.04
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.02
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.01
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.99
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.97
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.94
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.93
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.92
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.9
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.86
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.86
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.85
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.83
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.83
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.82
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.81
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.81
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.79
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.79
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.76
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.75
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.74
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.67
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.65
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.65
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.62
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.6
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.56
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.53
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.53
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.53
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.52
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.51
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.5
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.46
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.46
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.44
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.43
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.42
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.41
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.4
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.27
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.25
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.22
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.2
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.14
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.09
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.05
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.01
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.01
3ott_A	758	Two-component system sensor histidine kinase; beta	97.98
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.91
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.9
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.85
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.81
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.73
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.73
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.73
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.59
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.53
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.51
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.5
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.49
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.44
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.26
3ott_A	758	Two-component system sensor histidine kinase; beta	97.22
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.22
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.19
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.12
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.08
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.99
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.99
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.98
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.93
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.84
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.73
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.48
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.43
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.31
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.24
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.23
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.17
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.87
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.73
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.61
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.6
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.59
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.37
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.27
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.18
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.37
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.97
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.93
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.72
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.67
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.81
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.23
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	88.77
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.4
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.21
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	86.89
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	85.94
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	83.43
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.06
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	81.43
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	80.65

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-45  Score=333.00  Aligned_cols=285  Identities=16%  Similarity=0.234  Sum_probs=252.7

Q ss_pred             ccCCCCCCCeEEEEEcCC----CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQD----HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~----~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (432)
                      ....+|.+.|++++|+|+    +.+|++|+ |+.|+||++...+......+. +|...|.++.+++++..+++++.|   
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~~~~l~s~s~D---  101 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE-GHQLGVVSVDISHTLPIAASSSLD---  101 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECSSSSEEEEEETT---
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeec-cCCCCEEEEEECCCCCEEEEEeCC---
Confidence            456789999999999985    56899988 566999999877665555665 899999999999999999999999   


Q ss_pred             CCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (432)
                        +.|++||+.+++.+..+. +...+.+++|+|++.++++   |+.|++||+++++....+..+...+..++|+|+++.+
T Consensus       102 --~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          102 --AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             --SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             --CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence              999999999999998888 7889999999999999884   8999999999999988888888899999999999855


Q ss_pred             EEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  308 (432)
                      +.   |+.|+.|++||++++. +..+.+|...|.+++|+|++++|++|+.|+. |++||+++++++..+.+  |...|.+
T Consensus       180 as---g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~  253 (321)
T 3ow8_A          180 AS---GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSG--HASWVLN  253 (321)
T ss_dssp             EE---EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred             EE---EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcC--CCCceEE
Confidence            43   3489999999998854 5567889999999999999999999999999 99999999999888875  6689999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEE
Q 014007          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF  388 (432)
Q Consensus       309 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  388 (432)
                      ++|+|++++|++++.|++|++||+.++++                                   +..+..|.+.|.+++|
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-----------------------------------~~~~~~h~~~v~~v~~  298 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTC-----------------------------------VHTFFDHQDQVWGVKY  298 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEE-----------------------------------EEEECCCSSCEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCEE-----------------------------------EEEEcCCCCcEEEEEE
Confidence            99999999999999999999999988763                                   4457789999999999


Q ss_pred             ccCCCEEEEEecCCeEEEEEec
Q 014007          389 GHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       389 s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                      +|++++|++++.||.|++|++.
T Consensus       299 s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          299 NGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.8e-45  Score=340.37  Aligned_cols=283  Identities=15%  Similarity=0.206  Sum_probs=253.7

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ...+.+|...|++++|+|++.+|++|+ |+.|+|||+.+++..  ..+. +|...|.+++|++++..+++++.|     +
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~--~~l~-~h~~~V~~v~~~~~~~~l~sgs~D-----~  172 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLK-GHTDSVQDISFDHSGKLLASCSAD-----M  172 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--EEEe-ccCCcEEEEEEcCCCCEEEEEeCC-----C
Confidence            445678999999999999999999998 555999999887765  5565 789999999999999999999999     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      +|++||+.+++++..+. |...|.+++|+|++.++++   |++|++||+++++++..+..|...+..+.+++++..+  +
T Consensus       173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l--~  250 (410)
T 1vyh_C          173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI--A  250 (410)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE--E
T ss_pred             eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE--E
Confidence            99999999999999888 9999999999999988874   8999999999999999999999999999999998744  3


Q ss_pred             eecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCC--------------------CCEEEEEcCCCceEEEEECCCC
Q 014007          233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD--------------------GQLLATSSTKGTLVRIFNTLDG  291 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~--------------------~~~l~~~~~dg~~i~vwd~~~~  291 (432)
                      + |+.|+.|++||+++.. ...+.+|...|.+++|+|+                    |.+|++|+.|+. |++||++++
T Consensus       251 s-~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~  328 (410)
T 1vyh_C          251 S-CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTG  328 (410)
T ss_dssp             E-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTT
T ss_pred             E-EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCC
Confidence            3 3489999999998854 4567899999999999996                    678999999999 999999999


Q ss_pred             ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW  371 (432)
Q Consensus       292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (432)
                      +++..+.+  |...|.+++|+|+|++|++|+.||.|++||+.+++.                                  
T Consensus       329 ~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~----------------------------------  372 (410)
T 1vyh_C          329 MCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC----------------------------------  372 (410)
T ss_dssp             EEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC----------------------------------
T ss_pred             ceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----------------------------------
Confidence            99999985  668999999999999999999999999999987763                                  


Q ss_pred             eeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          372 SVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       372 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                       +..+.+|.+.|++++|+|++++|++|+.||.|++|++
T Consensus       373 -~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          373 -MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             -CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             -EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence             3457789999999999999999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.5e-44  Score=326.83  Aligned_cols=285  Identities=13%  Similarity=0.124  Sum_probs=249.0

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ....+.+|.+.|++++|+|++++|++|+ |+.|+|||+.+.+..  ..+. .|...+.+++|++++..+++++.|     
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~s~~~d-----  118 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV--HAIP-LRSSWVMTCAYAPSGNYVACGGLD-----  118 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--EEEE-CSSSCEEEEEECTTSSEEEEEETT-----
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc--eEee-cCCccEEEEEECCCCCEEEEEeCC-----
Confidence            3466789999999999999999999998 555999999887765  4444 588889999999999999999999     


Q ss_pred             CeEEEEeCCCCc----eeEEee-cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          156 NKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       156 ~~v~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      +.|++||+.+++    ....+. |.+.|.++.|++++.++..  |+.|++||+++++.+..+..|...+..++|+|+++.
T Consensus       119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  198 (340)
T 1got_B          119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL  198 (340)
T ss_dssp             CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence            999999998753    344555 8999999999999986663  899999999999999999999999999999999874


Q ss_pred             EEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      +  ++ |+.|+.|++||++++. ...+.+|...|.+++|+|++++|++|+.|+. |++||+++++.+..+....+...|.
T Consensus       199 l--~s-g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~  274 (340)
T 1got_B          199 F--VS-GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             E--EE-EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             E--EE-EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceE
Confidence            3  33 4489999999998854 5678899999999999999999999999999 9999999998888776433445799


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  387 (432)
                      +++|+|+|++|++|+.||.|++||+.+++.                                   +..+.+|.+.|.+++
T Consensus       275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-----------------------------------~~~~~~h~~~v~~~~  319 (340)
T 1got_B          275 SVSFSKSGRLLLAGYDDFNCNVWDALKADR-----------------------------------AGVLAGHDNRVSCLG  319 (340)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------------------EEEEECCSSCEEEEE
T ss_pred             EEEECCCCCEEEEECCCCeEEEEEcccCcE-----------------------------------eeEeecCCCcEEEEE
Confidence            999999999999999999999999987652                                   446789999999999


Q ss_pred             EccCCCEEEEEecCCeEEEEE
Q 014007          388 FGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       388 ~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      |+|+|++|++|+.||.|+||+
T Consensus       320 ~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          320 VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999995

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.9e-43  Score=323.60  Aligned_cols=287  Identities=11%  Similarity=0.092  Sum_probs=247.0

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ....+.+|.+.|++++|+|++++|++|+. +.|+|||..+.+...  .+. .+...+.+++|+|++..+++++.|     
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~--~~~-~~~~~v~~~~~sp~g~~lasg~~d-----  127 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH--AVT-MPCTWVMACAYAPSGCAIACGGLD-----  127 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EEE-CSSSCCCEEEECTTSSEEEEESTT-----
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce--EEe-cCCCCEEEEEECCCCCEEEEeeCC-----
Confidence            34667899999999999999999999995 459999988776653  343 477789999999999999999999     


Q ss_pred             CeEEEEeCCCC------ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecC
Q 014007          156 NKVMIWDDHQS------RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (432)
Q Consensus       156 ~~v~iwd~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  225 (432)
                      +.+++|++...      .....+. |...|.+++|++++..+++   |++|++||+++++.+..+..|...+.+++++|+
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~  207 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS  207 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence            99999998643      2344555 9999999999999987773   899999999999999999999999999999886


Q ss_pred             CCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC
Q 014007          226 VGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (432)
Q Consensus       226 ~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~  304 (432)
                      ....++++ |+.|+.|++||++++. +..+..|...|.+++|+|++++|++++.|+. |++||+++++.+..+..+.+..
T Consensus       208 ~~g~~l~s-gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~~  285 (354)
T 2pbi_B          208 ETGNTFVS-GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIF  285 (354)
T ss_dssp             SSCCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCS
T ss_pred             CCCCEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCccc
Confidence            54334454 4589999999998854 5667899999999999999999999999999 9999999998887776544445


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  384 (432)
                      .+.+++|+|+|++|++|+.|+.|++||+.+++.                                   +..+.+|.+.|+
T Consensus       286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-----------------------------------~~~l~~h~~~v~  330 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-----------------------------------VSILFGHENRVS  330 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-----------------------------------EEEECCCSSCEE
T ss_pred             ceeEEEEeCCCCEEEEEECCCcEEEEECCCCce-----------------------------------EEEEECCCCcEE
Confidence            789999999999999999999999999987762                                   345778999999


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEE
Q 014007          385 IVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       385 ~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      +++|+|||++|++|+.||.|+||+
T Consensus       331 ~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          331 TLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999995

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4e-44  Score=325.84  Aligned_cols=282  Identities=12%  Similarity=0.115  Sum_probs=229.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCC----------CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCC
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDP----------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  151 (432)
                      ..|...|.+++|+|||++|+++++.++++||...          ........+  .+...|.+++|++++. +++++.| 
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~d~~-l~~~s~d-  102 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGV--QTEAGVADLTWVGERG-ILVASDS-  102 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEE--EESSCEEEEEEETTTE-EEEEETT-
T ss_pred             ccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeee--ccCCCEEEEEEeCCCe-EEEEECC-
Confidence            3467789999999999999999988888887321          000000111  2456799999999975 5566777 


Q ss_pred             CCCCCeEEEEeCCCCceeEEe-----ecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEe
Q 014007          152 QYPLNKVMIWDDHQSRCIGEL-----SFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (432)
Q Consensus       152 ~~~~~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  223 (432)
                          |+|+|||+.+++.+..+     .|...|.+++|+|++.++++   |++|++||+++++++..+.+|...|.+++|+
T Consensus       103 ----g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~  178 (344)
T 4gqb_B          103 ----GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS  178 (344)
T ss_dssp             ----SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ----CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec
Confidence                99999999998765433     28899999999999999884   8999999999999999999999999999999


Q ss_pred             cCCCcEEEEeecCCCCcEEEEEccCCce-eee--eccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007          224 QGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI--MAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (432)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~--~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~  299 (432)
                      +++..+++.  ++.|+.|++||++++.. ..+  ..|...+.+++|+| ++++|++|+.|+. |++||+++++++..+..
T Consensus       179 ~~~~~~l~s--~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~~~~~~~~~  255 (344)
T 4gqb_B          179 PHKDSVFLS--CSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKSTSCVLSSAV  255 (344)
T ss_dssp             SSCTTEEEE--EETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC--CCEEEEC
T ss_pred             CCCCCceee--eccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCCcEEEEEcC
Confidence            999876543  35899999999998543 333  35666799999999 5678899999999 99999999999999985


Q ss_pred             CCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe
Q 014007          300 GADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL  378 (432)
Q Consensus       300 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (432)
                        |...|++++|+|++ ++|++|+.|++|+|||+.+++                                    +..+.+
T Consensus       256 --h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~------------------------------------~~~~~~  297 (344)
T 4gqb_B          256 --HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE------------------------------------LFRSQA  297 (344)
T ss_dssp             --CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE------------------------------------EEEECC
T ss_pred             --CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc------------------------------------EEEEcC
Confidence              66899999999998 579999999999999998775                                    345678


Q ss_pred             cCCCceEEEEccCCC-EEEEEecCCeEEEEEecCC
Q 014007          379 VEGSPYIVAFGHQKN-TVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       379 ~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~  412 (432)
                      |.+.|++++|+|+++ +|++++.||+|++|+++.+
T Consensus       298 H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          298 HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            999999999999986 5678999999999999654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.6e-43  Score=324.33  Aligned_cols=284  Identities=14%  Similarity=0.146  Sum_probs=226.4

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcC------C-cEEEEEcCCCeeEEE--eecccCcceeEEEEeeeCCeEEEecCCCCC
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGTD------H-GFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~~------~-~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  151 (432)
                      ...|...|++++|+|||++|++|++      + .|++|+...+.....  ... .+|...|.+++|++++.+++++ .| 
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~~s~d~~~l~~s-~d-  114 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG-VQTEAGVTDVAWVSEKGILVAS-DS-  114 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE-EECSSCEEEEEEETTTEEEEEE-TT-
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc-CCCCCCEEEEEEcCCCCEEEEE-CC-
Confidence            3569999999999999999999984      2 388888755443211  111 1477889999999998877654 46 


Q ss_pred             CCCCCeEEEEeCCCCceeEE-----eecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEe
Q 014007          152 QYPLNKVMIWDDHQSRCIGE-----LSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (432)
Q Consensus       152 ~~~~~~v~iwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  223 (432)
                          |+|++||+.+++....     ..|...|.+++|+|++.++++   |+.|++||+++++.+..+..|...+.+++|+
T Consensus       115 ----g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s  190 (357)
T 4g56_B          115 ----GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC  190 (357)
T ss_dssp             ----SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ----CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence                9999999988865432     137899999999999998884   8999999999999999999999999999999


Q ss_pred             cCCCcEEEEeecCCCCcEEEEEccCCcee---eeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (432)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~  299 (432)
                      ++++.+++.  ++.|+.|++||++++...   ....|...+.+++|+|+ +.+|++|+.|+. |++||+++++++..+..
T Consensus       191 ~~~~~~~~s--~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~~~~~~~~~~  267 (357)
T 4g56_B          191 PGKDTIFLS--CGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKNPDSAQTSAV  267 (357)
T ss_dssp             TTCSSCEEE--EETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSCGGGCEEECC
T ss_pred             cCCCceeee--eccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCCCcEeEEEec
Confidence            998776543  347999999999885432   23457788999999997 568899999999 99999999999988875


Q ss_pred             CCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe
Q 014007          300 GADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL  378 (432)
Q Consensus       300 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (432)
                        |...|++++|+|++ ++|++|+.|++|+|||+++++                                    +....+
T Consensus       268 --~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~------------------------------------~~~~~~  309 (357)
T 4g56_B          268 --HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE------------------------------------VFRDLS  309 (357)
T ss_dssp             --CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE------------------------------------EEEECC
T ss_pred             --cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc------------------------------------EeEECC
Confidence              66899999999987 579999999999999998876                                    223447


Q ss_pred             cCCCceEEEEcc-CCCEEEEEecCCeEEEEEecCC
Q 014007          379 VEGSPYIVAFGH-QKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       379 ~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      |.+.|++++|+| |+++|++++.||.|++|+++..
T Consensus       310 H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            999999999998 8999999999999999998553

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.3e-42  Score=312.10  Aligned_cols=298  Identities=16%  Similarity=0.222  Sum_probs=241.4

Q ss_pred             ccCCCCCC-CeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           79 STSSSPPP-TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        79 ~~~~~~~~-~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ..+.+|.+ .|.+++|+|+|++||+|+ |+.|+||++.+........+..+|...|.+++|+|++..|++++.|     +
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~   83 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----A   83 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----C
Confidence            34567877 999999999999999998 5559999998776544344434799999999999999999999999     9


Q ss_pred             eEEEEeCCCC--ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC---eeeEEEeeccCCcceEEEecCCC
Q 014007          157 KVMIWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       157 ~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                      .|++||+..+  +++..+. |...|.+++|+|++.++++   |+.|++||++++   +.+..+..|...+..++|+|+++
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            9999998876  4566776 8999999999999998884   899999999875   34566778889999999999998


Q ss_pred             cEEEEeecCCCCcEEEEEccCCc---eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-------------
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-------------  291 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-------------  291 (432)
                      .++.   ++.|+.|++||.+...   ...+.+|...|.+++|+|+|++|++++.|+. |++||....             
T Consensus       164 ~l~s---~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~  239 (345)
T 3fm0_A          164 LLAS---ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDP  239 (345)
T ss_dssp             CEEE---EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---C
T ss_pred             EEEE---EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCC
Confidence            5543   3489999999998753   3567899999999999999999999999999 999996322             


Q ss_pred             --ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeec
Q 014007          292 --TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSS  369 (432)
Q Consensus       292 --~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (432)
                        +++..+.+ .|...|.+++|+|++..|++++.|+.|++|+..........             ...+           
T Consensus       240 ~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-------------~~~~-----------  294 (345)
T 3fm0_A          240 SWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP-------------TFSL-----------  294 (345)
T ss_dssp             EEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC-------------CEEE-----------
T ss_pred             ccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee-------------eEEE-----------
Confidence              23444443 26789999999999999999999999999999876421110             0000           


Q ss_pred             ceeeEEEEecCCCceEEEEccCC-CEEEEEecCCeEEEEEecCC
Q 014007          370 EWSVAQFRLVEGSPYIVAFGHQK-NTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~  412 (432)
                        ......+|.+.|++++|+|++ .+|++|+.||.|++|++...
T Consensus       295 --~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          295 --TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             --EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred             --EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence              011224688899999999987 59999999999999998553

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.3e-42  Score=306.91  Aligned_cols=284  Identities=12%  Similarity=0.132  Sum_probs=241.0

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .....+|.+.|++++|+|++++|++|+ |+.|+|||+.+....  ..+. .|...+.++.|++++..+++++.|     +
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~s~d-----~   77 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQ-VTETPVRAGKFIARKNWIIVGSDD-----F   77 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEEGGGTEEEEEETT-----S
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee--EEee-ccCCcEEEEEEeCCCCEEEEECCC-----C
Confidence            455678999999999999999999998 555999999887765  4554 688899999999999999999999     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC-eeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      .|++||+.+++.+..+. |...|.+++|+|++.++++   |++|++||++++ .....+..|...+.+++|+|++...+ 
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l-  156 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF-  156 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE-
T ss_pred             EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE-
Confidence            99999999999999998 9999999999999998884   899999999887 55677888999999999999654433 


Q ss_pred             EeecCCCCcEEEEEccCCce-ee-eeccCCceeEEEEcC--CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          232 VCPGLQKGQVRVEHYASKRT-KF-IMAHDSRIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~-~~-~~~~~~~i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      ++ |+.|+.|++||++.... .. ...|...+..+.|+|  ++.+|++|+.|+. |++||+++++++..+.+  |...|.
T Consensus       157 ~s-gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~--h~~~v~  232 (304)
T 2ynn_A          157 AS-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVS  232 (304)
T ss_dssp             EE-EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEEC--CSSCEE
T ss_pred             EE-EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeCC--CCCCEE
Confidence            33 45899999999987432 23 346778899999987  7789999999999 99999999999999986  668999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  387 (432)
                      +++|+|++++|++|+.||+|++||+.+++.                                   ...+..|.+.+++++
T Consensus       233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~-----------------------------------~~~~~~~~~~~~~~~  277 (304)
T 2ynn_A          233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKV-----------------------------------EKTLNVGLERSWCIA  277 (304)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTCCE-----------------------------------EEEECCSSSSEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCce-----------------------------------eeeccCCCccEEEEE
Confidence            999999999999999999999999998763                                   345667888899999


Q ss_pred             EccCCC--EEEEEecCCeEEEEEec
Q 014007          388 FGHQKN--TVVILGMDGSFYRCQFD  410 (432)
Q Consensus       388 ~s~~~~--~l~~~~~dg~v~iw~~~  410 (432)
                      |+|++.  +|++|+.|| +.+|++.
T Consensus       278 ~~~~~~~~~~asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          278 THPTGRKNYIASGFDNG-FTVLSLG  301 (304)
T ss_dssp             ECTTCGGGCEEEEETTE-EEEEECC
T ss_pred             ECCCCCceEEEEecCCc-eEEEEec
Confidence            999875  477776665 6666653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-42  Score=320.81  Aligned_cols=293  Identities=15%  Similarity=0.167  Sum_probs=240.7

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ....+.+|.+.|++++|+|++++|++|+ |+.|+|||+.+.+..  ..+. .|...|.+++|+|++..+++++.|     
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~--~~~~-~h~~~v~~~~~s~~g~~las~~~d-----  129 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT--HAIK-LHCPWVMECAFAPNGQSVACGGLD-----  129 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE--EEEE-CCCTTCCCCEECTTSSEEEECCSS-----
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--eEEe-cCCCCEEEEEECCCCCEEEEeeCC-----
Confidence            3467889999999999999999999998 555999999888766  4454 688889999999999999999999     


Q ss_pred             CeEEEEeCCCCc-------eeEEee-cCCceEEEEEecCc-cEEE---eCCeEEEEEcCCCeeeEEE-----eeccCCcc
Q 014007          156 NKVMIWDDHQSR-------CIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQI-----ETIANPKG  218 (432)
Q Consensus       156 ~~v~iwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~-----~~~~~~~~  218 (432)
                      +.|++||+.+..       ....+. |.+.|.++.|.|++ ..++   .|++|++||+++++.+..+     ..|...+.
T Consensus       130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~  209 (380)
T 3iz6_a          130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL  209 (380)
T ss_dssp             SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred             CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence            999999987532       233455 88999999999964 3344   2899999999999888777     45777888


Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~  296 (432)
                      .+++++....++ ++ |+.|+.|++||++.  ..+..+.+|...|.+++|+|++++|++|+.|++ |++||+++++.+..
T Consensus       210 ~~~~~~~~~~~l-~s-gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          210 SLSINSLNANMF-IS-GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQV  286 (380)
T ss_dssp             EEEECSSSCCEE-EE-EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEE
T ss_pred             EEEeecCCCCEE-EE-EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEE
Confidence            888877444433 33 45899999999974  456778899999999999999999999999999 99999999999888


Q ss_pred             EEeCCC-----cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007          297 VRRGAD-----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW  371 (432)
Q Consensus       297 ~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (432)
                      +..+..     ...|++++|+|+|++|++|+.||.|++||+.+++.+...                              
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~------------------------------  336 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL------------------------------  336 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE------------------------------
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE------------------------------
Confidence            865321     124899999999999999999999999999877621100                              


Q ss_pred             eeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          372 SVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       372 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                       .....+|.+.|++++|+|||++|++|+.||.|+||++..
T Consensus       337 -~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          337 -GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             -CCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             -ecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence             000146888999999999999999999999999999853

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.6e-41  Score=304.98  Aligned_cols=293  Identities=16%  Similarity=0.220  Sum_probs=240.0

Q ss_pred             ccCCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCee---EEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (432)
                      ..+.+|.+.|++++|+|++ ++|++|+ |+.|++|++.....   .....+. +|...|.++.|++++..+++++.|   
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D---   86 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWD---   86 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT---
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCC---
Confidence            4678999999999999965 7898888 55599999864321   2234565 799999999999999999999999   


Q ss_pred             CCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC--
Q 014007          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG--  227 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--  227 (432)
                        ++|++||+.+++.+..+. |...|.+++|+|++.++++   |++|++||++ ++.+..+..|...+..+.+.|...  
T Consensus        87 --~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           87 --KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             --SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred             --CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence              999999999999999988 9999999999999988884   8999999986 567778888999999999998643  


Q ss_pred             --cEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC
Q 014007          228 --SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (432)
Q Consensus       228 --~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~  304 (432)
                        ...+++ ++.|+.|++||++... ...+.+|...|.+++|+|+|++|++++.|+. |++||+.+++++..+..   ..
T Consensus       164 ~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~---~~  238 (319)
T 3frx_A          164 DDSVTIIS-AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSA---QD  238 (319)
T ss_dssp             --CCEEEE-EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---CS
T ss_pred             CCccEEEE-EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---CC
Confidence              223443 4589999999998854 4567799999999999999999999999999 99999999999998883   46


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY  384 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  384 (432)
                      .|.+++|+|++.+|++++.+ .+++|++.....+...                     .+...      .....|...+.
T Consensus       239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~---------------------~~~~~------~~~~~~~~~v~  290 (319)
T 3frx_A          239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDL---------------------RPEFA------GYSKAAEPHAV  290 (319)
T ss_dssp             CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEE---------------------CCCCT------TCCGGGCCCEE
T ss_pred             cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeecc---------------------Ccccc------ccccCcCccee
Confidence            89999999999999988754 5999999875421110                     00000      00123456789


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          385 IVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       385 ~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +++|+|||++|++|+.||.|++|++..
T Consensus       291 ~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          291 SLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             EEEECCCCCEEEEeecCceEEEEEEee
Confidence            999999999999999999999999854

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.3e-41  Score=311.05  Aligned_cols=280  Identities=15%  Similarity=0.180  Sum_probs=236.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeeccc-----------------CcceeEEEEeeeCCeEEEe
Q 014007           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER-----------------GGGIGVVEMLFRCNILALV  145 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~  145 (432)
                      .|...|++++|+|||++||+|+++.++||++.+++...  .+..                 .+...|.+++|++++..++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVA--RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEE--EECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEE--EecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            59999999999999999999998889999998876653  2220                 1223488999999999999


Q ss_pred             cCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEE
Q 014007          146 GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCA  221 (432)
Q Consensus       146 s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  221 (432)
                      +++.|     +.|++||+.+++.+..+. |...|.+++|+|++.++++   |++|++||+++++....+. +...+..++
T Consensus       140 s~~~d-----~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~  213 (393)
T 1erj_A          140 TGAED-----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVA  213 (393)
T ss_dssp             EEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred             EEcCC-----CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEE
Confidence            99999     999999999999988888 9999999999999988884   8999999999998887775 456788899


Q ss_pred             Eec-CCCcEEEEeecCCCCcEEEEEccCCcee-ee-------eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-
Q 014007          222 VSQ-GVGSLVLVCPGLQKGQVRVEHYASKRTK-FI-------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-  291 (432)
Q Consensus       222 ~~~-~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~-------~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-  291 (432)
                      ++| ++..+  ++ |+.|+.|++||++++... .+       .+|...|.+++|+|+|++|++|+.|+. |++||+++. 
T Consensus       214 ~~~~~~~~l--~~-~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~  289 (393)
T 1erj_A          214 VSPGDGKYI--AA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNAN  289 (393)
T ss_dssp             ECSTTCCEE--EE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC----
T ss_pred             EECCCCCEE--EE-EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCC
Confidence            999 55533  33 448999999999885432 23       578999999999999999999999999 999999763 


Q ss_pred             -----------ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEe
Q 014007          292 -----------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK  360 (432)
Q Consensus       292 -----------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (432)
                                 .+...+.+  |...|.+++|+|++++|++|+.||.|++||+.+++.                       
T Consensus       290 ~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~-----------------------  344 (393)
T 1erj_A          290 NKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-----------------------  344 (393)
T ss_dssp             -----------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE-----------------------
T ss_pred             CcccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE-----------------------
Confidence                       34455554  668899999999999999999999999999988762                       


Q ss_pred             ecccceeecceeeEEEEecCCCceEEEEcc------CCCEEEEEecCCeEEEEEecC
Q 014007          361 GVLPKYFSSEWSVAQFRLVEGSPYIVAFGH------QKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                  +..+.+|.+.|.+++|++      ++++|++|+.||.|+||++..
T Consensus       345 ------------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          345 ------------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ------------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             ------------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence                        446788999999999986      688999999999999999853

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.9e-41  Score=301.10  Aligned_cols=286  Identities=14%  Similarity=0.255  Sum_probs=245.1

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .....+|...|++++|+|++++|++|+ |+.|++|++.+++..  ..+. +|...|.+++|++++..+++++.|     +
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~~~d-----~   87 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS-GHKLGISDVAWSSDSNLLVSASDD-----K   87 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc--hhhc-cCCCceEEEEEcCCCCEEEEECCC-----C
Confidence            456678999999999999999999998 555999999877655  4454 688999999999999999999999     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      .|++||+.+++.+..+. |...|.+++|+|++.++++   |+.|++||+++++.+..+..|...+..++|+++++.++. 
T Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-  166 (312)
T 4ery_A           88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-  166 (312)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE-
T ss_pred             EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE-
Confidence            99999999999999988 9999999999999998884   899999999999999999999999999999999875432 


Q ss_pred             eecCCCCcEEEEEccCCce-eee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc-eEEE
Q 014007          233 CPGLQKGQVRVEHYASKRT-KFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE-IYSL  309 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~-~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~-i~~~  309 (432)
                        ++.|+.|++||++++.. ..+ ..+...+.+++|+|++++|++++.|+. |++||+++++++..+..+..... +...
T Consensus       167 --~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~  243 (312)
T 4ery_A          167 --SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCIFAN  243 (312)
T ss_dssp             --EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred             --EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEEecCCceEEEEEE
Confidence              34899999999988554 333 456778999999999999999999999 99999999999988876432222 2233


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEc
Q 014007          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG  389 (432)
Q Consensus       310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  389 (432)
                      ...+++.+|++|+.||.|++||+.+++.                                   +..+.+|.+.|.+++|+
T Consensus       244 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~-----------------------------------~~~~~~h~~~v~~~~~~  288 (312)
T 4ery_A          244 FSVTGGKWIVSGSEDNLVYIWNLQTKEI-----------------------------------VQKLQGHTDVVISTACH  288 (312)
T ss_dssp             EECSSSCEEEECCTTSCEEEEETTTCCE-----------------------------------EEEECCCSSCEEEEEEC
T ss_pred             EEeCCCcEEEEECCCCEEEEEECCCchh-----------------------------------hhhhhccCCcEEEEeec
Confidence            3446889999999999999999988762                                   44677899999999999


Q ss_pred             cCCCEEEEEe--cCCeEEEEEec
Q 014007          390 HQKNTVVILG--MDGSFYRCQFD  410 (432)
Q Consensus       390 ~~~~~l~~~~--~dg~v~iw~~~  410 (432)
                      |+++.|++++  .||.|++|+.|
T Consensus       289 p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          289 PTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSSSEEEEEECTTTCCEEEEECC
T ss_pred             CcCCceEEEEccCCccEEEecCC
Confidence            9999999987  69999999975

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1e-40  Score=304.41  Aligned_cols=297  Identities=17%  Similarity=0.176  Sum_probs=236.4

Q ss_pred             cccCCCCCCCeEEEEE-----cC-CCCEEEEEc-CCcEEEEEcCCCe-----eEEEeecccCcceeEEEEeeeCCeEEEe
Q 014007           78 ESTSSSPPPTLLHISF-----NQ-DHGCFAAGT-DHGFRIYNCDPFR-----EIFRRDFERGGGIGVVEMLFRCNILALV  145 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~-----s~-~~~~l~~~~-~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~  145 (432)
                      ...+.+|.+.|++++|     ++ ++++|++|+ |+.|+||++...+     ......+. +|...|.+++|++++.+++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTTEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCCEEE
Confidence            3567889999999999     76 899999998 5559999986542     12234555 7899999999999999999


Q ss_pred             cCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEe---eccCCcc
Q 014007          146 GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIE---TIANPKG  218 (432)
Q Consensus       146 s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~---~~~~~~~  218 (432)
                      +++.|     ++|++||+.+++.+..+. |...|.+++|+|++.++++   |++|++||+... ......   .|...+.
T Consensus        93 s~s~D-----~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           93 SSSWD-----KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS  166 (343)
T ss_dssp             EEETT-----SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred             EEcCC-----CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence            99999     999999999999999888 9999999999999998884   899999999743 333332   5677888


Q ss_pred             eEEEecCCCc--------EEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC-
Q 014007          219 LCAVSQGVGS--------LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-  289 (432)
Q Consensus       219 ~~~~~~~~~~--------~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~-  289 (432)
                      +++|+|++..        .++++ ++.|+.|++||........+.+|...|.+++|+|+|++|++|+.|+. |++||+. 
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~  244 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFAS-VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILN  244 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEE-EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSC
T ss_pred             eeeeccccccccccCCCCCEEEE-EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCC
Confidence            9999998731        23444 44899999999766667778899999999999999999999999999 9999994 


Q ss_pred             CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC--CCCCCCCCCCCCCCCCceeEeeccccee
Q 014007          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA--RSEPRSTSDPTLPTSSLSFIKGVLPKYF  367 (432)
Q Consensus       290 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (432)
                      .......+.   +...|.+++|+|++++++++ .|+.|++||+.+++...  .+...                       
T Consensus       245 ~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~-----------------------  297 (343)
T 2xzm_R          245 LTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAE-----------------------  297 (343)
T ss_dssp             CSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCC-----------------------
T ss_pred             Ccccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecC-----------------------
Confidence            444555554   34579999999999988755 57889999998876432  10000                       


Q ss_pred             ecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                       .........+|...|.+++|+|+|++|++|+.||.|++|+++.
T Consensus       298 -~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          298 -PITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             -SGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             -cchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence             0000011235777899999999999999999999999999853

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.2e-39  Score=298.53  Aligned_cols=305  Identities=30%  Similarity=0.491  Sum_probs=238.9

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      ....|...|++++|+|||++|++|++++++||++++.+.......   +...+..+.+..+..+++ ++.+     ++|+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~d-----~~v~   84 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM---RHLSKVRMLHRTNYVAFV-TGVK-----EVVH   84 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC---SCCCEEEECTTSSEEEEE-CSST-----TEEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec---CCeEEEEEcCCCCEEEEE-ECCc-----cEEE
Confidence            347799999999999999999999999999999988766644333   234455555555544444 4445     8999


Q ss_pred             EEeCCCCceeEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCC-eeeEEEeeccCCcceEEEecCCCcEEEEee-cCC
Q 014007          160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCP-GLQ  237 (432)
Q Consensus       160 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~  237 (432)
                      +||+.+++.+..+.+...|.+++++++...++.++.|++||+.++ +.+..+..   +...+++++  ..  ++++ |..
T Consensus        85 iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~--la~~sg~~  157 (355)
T 3vu4_A           85 IWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GL--LVYSNEFN  157 (355)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TE--EEEEESSC
T ss_pred             EEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cE--EEEeCCCc
Confidence            999999999999998899999999999888889999999999988 77666654   445677777  33  3333 679


Q ss_pred             CCcEEEEEccCCc-----------------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC
Q 014007          238 KGQVRVEHYASKR-----------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (432)
Q Consensus       238 d~~i~i~d~~~~~-----------------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~  300 (432)
                      +|.|++||++...                 ...+.+|...|.+++|+|+|++|++|+.|++.|++||+++++++..+..+
T Consensus       158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g  237 (355)
T 3vu4_A          158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG  237 (355)
T ss_dssp             TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred             CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            9999999999754                 67788999999999999999999999999933999999999999999843


Q ss_pred             CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEee-cccceeecceeeEEEEec
Q 014007          301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG-VLPKYFSSEWSVAQFRLV  379 (432)
Q Consensus       301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  379 (432)
                      .|...|.+++|+|+|++|++++.|++|+|||++.....+..                .+.. .++.++...|.+..+..+
T Consensus       238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~  301 (355)
T 3vu4_A          238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH----------------ALKGWINMKYFQSEWSLCNFKLS  301 (355)
T ss_dssp             TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE----------------ETTTTEECCCCCCSSCSEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc----------------cccceeeccccccccceeEEEec
Confidence            36789999999999999999999999999999876422111                0000 345566666766666654


Q ss_pred             CC---CceEEEEccCCCEEEEEecCCeEEEEEecCCCCCc
Q 014007          380 EG---SPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGE  416 (432)
Q Consensus       380 ~~---~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~  416 (432)
                      ..   ....++|++|++.|++++.||.+++|++......+
T Consensus       302 ~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~  341 (355)
T 3vu4_A          302 VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEME  341 (355)
T ss_dssp             CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTT
T ss_pred             cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCc
Confidence            43   34789999999999999999999999997754443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.2e-40  Score=323.21  Aligned_cols=325  Identities=13%  Similarity=0.162  Sum_probs=244.4

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ......+|...|++++|+|+|++||+|+ |+.|+|||+.+.+......+. +|...|.+++|+|++..+++++.+. ...
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~~~-~~~  128 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGR-ERF  128 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCS-SCS
T ss_pred             cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec-ccCCceEEEEECCCCCEEEEEECCC-Cce
Confidence            3456678999999999999999999998 555999999765544445555 6888999999999999888766430 001


Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEecCccE-EEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII-VVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      +.|++||  .++.+..+. |...|.+++|+|++.+ +++   |++|++||..+++.+..+..|...|.+++|+|+++.+ 
T Consensus       129 ~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~l-  205 (611)
T 1nr0_A          129 GHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF-  205 (611)
T ss_dssp             EEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE-
T ss_pred             eEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEE-
Confidence            4677777  566667777 9999999999999863 553   8999999999999999999999999999999998844 


Q ss_pred             EEeecCCCCcEEEEEccCCce-eeee-------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe---
Q 014007          231 LVCPGLQKGQVRVEHYASKRT-KFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR---  299 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~~-~~~~-------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~---  299 (432)
                       ++ ++.|+.|++||+.++.. ..+.       +|...|.+++|+|+|++|++++.|++ |++||+.+++++..+..   
T Consensus       206 -as-~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~~  282 (611)
T 1nr0_A          206 -AS-TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTR  282 (611)
T ss_dssp             -EE-EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSS
T ss_pred             -EE-EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCCC
Confidence             43 34899999999887543 3342       79999999999999999999999999 99999998887665531   


Q ss_pred             --------------------------------------CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCC
Q 014007          300 --------------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS  341 (432)
Q Consensus       300 --------------------------------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  341 (432)
                                                            ..|...|++++|+|+|++|++++.|++|++||+.+++.....
T Consensus       283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~  362 (611)
T 1nr0_A          283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF  362 (611)
T ss_dssp             GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS
T ss_pred             ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec
Confidence                                                  136788999999999999999999999999999987654332


Q ss_pred             -CCCCCCCC---CCCCCC---------ceeEee-----------------------ccc-------------ceeeccee
Q 014007          342 -EPRSTSDP---TLPTSS---------LSFIKG-----------------------VLP-------------KYFSSEWS  372 (432)
Q Consensus       342 -~~~~~~~~---~~~~~~---------~~~~~~-----------------------~~~-------------~~~~~~~~  372 (432)
                       ..|...+.   ..++..         +.++..                       ..+             ..+... .
T Consensus       363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~-~  441 (611)
T 1nr0_A          363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG-K  441 (611)
T ss_dssp             SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT-E
T ss_pred             ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC-c
Confidence             11111110   000000         000000                       000             000001 1


Q ss_pred             eEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       373 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +..+. |...+.+++|+|||++|++|+.||.|++|+++.
T Consensus       442 ~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~  479 (611)
T 1nr0_A          442 LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG  479 (611)
T ss_dssp             EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred             eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC
Confidence            22222 566789999999999999999999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.5e-40  Score=322.96  Aligned_cols=287  Identities=15%  Similarity=0.209  Sum_probs=233.4

Q ss_pred             ccCCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ..+.+|...|++++|+|++. .|++|+ |+.|++|+..+.+..  ..+. +|...|.+++|+|++..+++++.|     +
T Consensus       141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~--~~l~-~H~~~V~~v~fspdg~~las~s~D-----~  212 (611)
T 1nr0_A          141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK--STFG-EHTKFVHSVRYNPDGSLFASTGGD-----G  212 (611)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe--eeec-cccCceEEEEECCCCCEEEEEECC-----C
Confidence            45678999999999999987 588887 555999998776554  5565 799999999999999999999999     9


Q ss_pred             eEEEEeCCCCceeEEe--------ecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEE---------------
Q 014007          157 KVMIWDDHQSRCIGEL--------SFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQI---------------  210 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~---------------  210 (432)
                      +|++||+.+++.+..+        .|.+.|.+++|+|++.++++   |++|++||+.+++.+..+               
T Consensus       213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  292 (611)
T 1nr0_A          213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW  292 (611)
T ss_dssp             CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred             cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence            9999999999888777        48899999999999998884   899999999887665433               


Q ss_pred             ----------------------------eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee--------
Q 014007          211 ----------------------------ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--------  254 (432)
Q Consensus       211 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--------  254 (432)
                                                  .+|...+..++|+|+++.++  + ++.|+.|++||+.++.....        
T Consensus       293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~--s-~s~D~~v~~Wd~~~~~~~~~~~~~h~~~  369 (611)
T 1nr0_A          293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF--S-ADAEGHINSWDISTGISNRVFPDVHATM  369 (611)
T ss_dssp             CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--E-EETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred             cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEE--E-EeCCCcEEEEECCCCceeeecccCCcce
Confidence                                        35677888999999998554  3 34899999999875322110        


Q ss_pred             ---------------------------------------------------------------------------eccCC
Q 014007          255 ---------------------------------------------------------------------------MAHDS  259 (432)
Q Consensus       255 ---------------------------------------------------------------------------~~~~~  259 (432)
                                                                                                 ..|..
T Consensus       370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~  449 (611)
T 1nr0_A          370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY  449 (611)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSS
T ss_pred             EEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCC
Confidence                                                                                       01234


Q ss_pred             ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC-CCCC
Q 014007          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV-NSGS  338 (432)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~  338 (432)
                      .+.+++|+|+|++|++|+.|+. |++||+.+++...... ..|...|++++|+|||++|++++.|++|++||+.+ ++..
T Consensus       450 ~v~~va~spdg~~lasgs~D~~-v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~  527 (611)
T 1nr0_A          450 NSSCVALSNDKQFVAVGGQDSK-VHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA  527 (611)
T ss_dssp             CEEEEEECTTSCEEEEEETTSE-EEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             CceEEEEeCCCCEEEEeCCCCe-EEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCcee
Confidence            5789999999999999999999 9999998765422111 12778999999999999999999999999999987 4321


Q ss_pred             CCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      ..                                 ..+..|.+.|++++|+|||++|++|+.||+|++|+++.
T Consensus       528 ~~---------------------------------~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~  567 (611)
T 1nr0_A          528 HT---------------------------------NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  567 (611)
T ss_dssp             CC---------------------------------CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             ee---------------------------------eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence            10                                 01224888999999999999999999999999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-39  Score=297.83  Aligned_cols=286  Identities=13%  Similarity=0.183  Sum_probs=248.3

Q ss_pred             CCcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007           76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (432)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (432)
                      .....+.+|.+.|++++|+|++++|++|+ ++.|++|++.+++..  ..+. +|...|.+++|++++..+++++.|    
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~~~d----   95 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL--GTLD-GHTGTIWSIDVDCFTKYCVTGSAD----   95 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT----
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh--hhhh-hcCCcEEEEEEcCCCCEEEEEeCC----
Confidence            34466788999999999999999999998 455999999887765  4554 688999999999999999999998    


Q ss_pred             CCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---C-----CeEEEEEcCCCe-----------eeEEEeeccC
Q 014007          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---E-----QKIFVYNFADLK-----------LLHQIETIAN  215 (432)
Q Consensus       155 ~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d-----~~i~i~d~~~~~-----------~~~~~~~~~~  215 (432)
                       +.|++||+.+++.+..+.+...+.+++|+|++.+++.   +     +.|++||+....           ....+..+..
T Consensus        96 -g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (369)
T 3zwl_B           96 -YSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG  174 (369)
T ss_dssp             -TEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred             -CeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence             9999999999999999999999999999999998884   5     899999987653           2334444444


Q ss_pred             --CcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC
Q 014007          216 --PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (432)
Q Consensus       216 --~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~  291 (432)
                        .+..++|+|+++.++.   ++.||.|++||++.  .....+..|...|.+++|+|++++|++++.|+. |++||++++
T Consensus       175 ~~~~~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~  250 (369)
T 3zwl_B          175 LDAATVAGWSTKGKYIIA---GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVSTL  250 (369)
T ss_dssp             CCCEEEEEECGGGCEEEE---EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTC
T ss_pred             ccceeEEEEcCCCCEEEE---EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCCC
Confidence              7888999999886543   34799999999997  445667889999999999999999999999999 999999999


Q ss_pred             ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC--------------eEEEEEecCCCCCCCCCCCCCCCCCCCCCCce
Q 014007          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG--------------TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLS  357 (432)
Q Consensus       292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (432)
                      +.+..+.   +...+..++|+|+++++++++.++              .+++||+.+++.                    
T Consensus       251 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------------------  307 (369)
T 3zwl_B          251 QVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE--------------------  307 (369)
T ss_dssp             CEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE--------------------
T ss_pred             ceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc--------------------
Confidence            9999988   558899999999999999999888              788888877652                    


Q ss_pred             eEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          358 FIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                     +..+..|.+.|.+++|+|++++|++++.||.|++|+++.
T Consensus       308 ---------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          308 ---------------IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             ---------------EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             ---------------hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence                           446788999999999999999999999999999999965

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-40  Score=297.97  Aligned_cols=287  Identities=13%  Similarity=0.177  Sum_probs=224.7

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeec-ccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ..+.+|.+.|++++|+|+  +|++|+ |+.|+||++..........+ ..+|...|.+++|+|++..+++++.|     +
T Consensus         8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-----~   80 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD-----S   80 (330)
T ss_dssp             EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC-----C
Confidence            456789999999999998  888887 55699999976543333444 22488999999999999999999999     9


Q ss_pred             eEEEEeCCC-------CceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC----CeeeEEEeeccCCcceEE
Q 014007          157 KVMIWDDHQ-------SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD----LKLLHQIETIANPKGLCA  221 (432)
Q Consensus       157 ~v~iwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~  221 (432)
                      +|++||+..       .+.+..+. |...|.+++|+|++.++++   |++|++||++.    .+++..+..|...+..++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            999999853       34566666 9999999999999998884   89999999943    256777888999999999


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccCC---ceeeeeccCCceeEEEEcCC--CCEEEEEcCCCceEEEEECCCC-----
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQD--GQLLATSSTKGTLVRIFNTLDG-----  291 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~dg~~i~vwd~~~~-----  291 (432)
                      |+|++..+  ++ ++.|+.|++||....   .+..+.+|...|.+++|+|+  +.+|++|+.|++ |++||+..+     
T Consensus       161 ~~p~~~~l--~s-~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~~  236 (330)
T 2hes_X          161 WHPSEALL--AS-SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDDQ  236 (330)
T ss_dssp             ECSSSSEE--EE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTSC
T ss_pred             ECCCCCEE--EE-EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCcccc
Confidence            99998744  43 448999999998764   45678899999999999998  778999999999 999998754     


Q ss_pred             ---ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceee
Q 014007          292 ---TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS  368 (432)
Q Consensus       292 ---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (432)
                         .+...+.. .|...|.+++|++++ +|++++.||.|+|||..+++..                              
T Consensus       237 ~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~------------------------------  284 (330)
T 2hes_X          237 QEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK------------------------------  284 (330)
T ss_dssp             EEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE------------------------------
T ss_pred             ceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE------------------------------
Confidence               23333332 267899999999765 7899999999999999765310                              


Q ss_pred             cceeeE-EEEecCC-CceEEEEcc--CCCEEEEEecCCeEEEEEecC
Q 014007          369 SEWSVA-QFRLVEG-SPYIVAFGH--QKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       369 ~~~~~~-~~~~~~~-~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~  411 (432)
                         .+. ....|.. .|++++|+|  ++++|++|+.||.|+||+++.
T Consensus       285 ---~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          285 ---VFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ---EEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ---EEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence               011 1235665 799999999  789999999999999999753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-39  Score=318.34  Aligned_cols=276  Identities=20%  Similarity=0.292  Sum_probs=243.4

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      ....+|...|.+++|+|++++|++++++ .|++|+.+....   ..+. +|...+.+++|++++..+++++.|     +.
T Consensus       297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~---~~~~-~~~~~v~~~~~s~~g~~l~~~~~d-----g~  367 (577)
T 2ymu_A          297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL---QTLT-GHSSSVWGVAFSPDGQTIASASDD-----KT  367 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE---EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee---EEEe-CCCCCEEEEEECCCCCEEEEEeCC-----CE
Confidence            4567899999999999999999998854 599999875543   2343 688899999999999999999998     99


Q ss_pred             EEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      |++||. +++.+..+. |...|.+++|+|++.++++   |+.|++||. +++.+..+..|...+..++|+|+++.++.  
T Consensus       368 v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~--  443 (577)
T 2ymu_A          368 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIAS--  443 (577)
T ss_dssp             EEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEE--
T ss_pred             EEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEE--
Confidence            999994 677777777 8999999999999998884   889999995 67888889999999999999999885543  


Q ss_pred             ecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~  313 (432)
                       ++.|+.|++||.....+..+.+|...|.+++|+|++++|++++.|+. |++|| .+++++..+.+  |...|++++|+|
T Consensus       444 -~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~-~~~~~~~~~~~--h~~~v~~l~~s~  518 (577)
T 2ymu_A          444 -ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLTG--HSSSVRGVAFSP  518 (577)
T ss_dssp             -EETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEE-TTSCEEEEEEC--CSSCEEEEEECT
T ss_pred             -EcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEc-CCCCEEEEEeC--CCCCEEEEEEcC
Confidence             33799999999988888889999999999999999999999999999 99999 57889988885  668999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC
Q 014007          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN  393 (432)
Q Consensus       314 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  393 (432)
                      +|++|++++.||.|+|||.. ++.                                   +..+.+|.+.|++++|+|||+
T Consensus       519 dg~~l~s~~~dg~v~lwd~~-~~~-----------------------------------~~~~~~h~~~v~~~~fs~dg~  562 (577)
T 2ymu_A          519 DGQTIASASDDKTVKLWNRN-GQL-----------------------------------LQTLTGHSSSVWGVAFSPDGQ  562 (577)
T ss_dssp             TSSCEEEEETTSEEEEECTT-SCE-----------------------------------EEEEECCSSCEEEEEECTTSS
T ss_pred             CCCEEEEEECcCEEEEEeCC-CCE-----------------------------------EEEEcCCCCCEEEEEEcCCCC
Confidence            99999999999999999963 331                                   557889999999999999999


Q ss_pred             EEEEEecCCeEEEEE
Q 014007          394 TVVILGMDGSFYRCQ  408 (432)
Q Consensus       394 ~l~~~~~dg~v~iw~  408 (432)
                      +|++++.||.|++|+
T Consensus       563 ~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          563 TIASASSDKTVKLWN  577 (577)
T ss_dssp             CEEEEETTSCEEEEC
T ss_pred             EEEEEeCCCEEEEeC
Confidence            999999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.1e-39  Score=294.05  Aligned_cols=295  Identities=16%  Similarity=0.163  Sum_probs=241.3

Q ss_pred             ccCCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCee---EEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~-~~~l~~~~-~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (432)
                      .++.+|.+.|++|+|+|+ +++|++|+ |+.|+|||+...+.   .....+. +|...|.++.|++++..+++++.|   
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d---  107 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWD---  107 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETT---
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEccc---
Confidence            457899999999999998 57999988 55699999976442   2334555 789999999999999999999999   


Q ss_pred             CCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeee-EEEeeccCCcceEEEecCCCc
Q 014007          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  228 (432)
                        +.|++|+........... +...+..+.+++++.++++   |+.+++||+...... .....+...+..+++++++..
T Consensus       108 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          108 --GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             --SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred             --ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence              999999999888777777 7888899999999888773   899999998765443 334567788889999999877


Q ss_pred             EEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      .++++ ++.|+.|++||++... ...+.+|...|++++|+|++++|++|+.|+. |++||+++.+.+..+.   +...+.
T Consensus       186 ~~~~s-~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~---~~~~v~  260 (340)
T 4aow_A          186 PIIVS-CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLD---GGDIIN  260 (340)
T ss_dssp             CEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEE---CSSCEE
T ss_pred             cEEEE-EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeec---CCceEE
Confidence            76665 4489999999999854 4567789999999999999999999999999 9999999999999888   346899


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  387 (432)
                      +++|+|++.++ +++.|+.|++||+++...+...                          ...........|...|++++
T Consensus       261 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~--------------------------~~~~~~~~~~~h~~~v~~l~  313 (340)
T 4aow_A          261 ALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDEL--------------------------KQEVISTSSKAEPPQCTSLA  313 (340)
T ss_dssp             EEEECSSSSEE-EEEETTEEEEEETTTTEEEEEE--------------------------CCC-------CCCCCEEEEE
T ss_pred             eeecCCCCcee-eccCCCEEEEEECCCCeEEEec--------------------------cccceeeeccCCCCCEEEEE
Confidence            99999988765 5557999999999876532111                          01111224567888999999


Q ss_pred             EccCCCEEEEEecCCeEEEEEecC
Q 014007          388 FGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       388 ~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      |+|||++|++|+.||.|+||++..
T Consensus       314 ~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          314 WSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCEEEEEeCCC
Confidence            999999999999999999999854

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.8e-39  Score=290.85  Aligned_cols=280  Identities=12%  Similarity=0.132  Sum_probs=239.9

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeE---EEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      ...|...|++++|+|++++|++++++.|++|++.+.+..   ..... .+|...+.++.|++++..+++++.|     +.
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-----~~  120 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC-LNRDNYIRSCKLLPDGCTLIVGGEA-----ST  120 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEEC-SCTTSBEEEEEECTTSSEEEEEESS-----SE
T ss_pred             eccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccc-cCCCCcEEEEEEcCCCCEEEEEcCC-----Cc
Confidence            346999999999999999999999666999999765432   11111 1578899999999999999999988     99


Q ss_pred             EEEEeCCCCc--eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          158 VMIWDDHQSR--CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       158 v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      |++||+.+++  ....+. |...|.+++|+|++.++++   |+.|++||+++++.+..+..|...+..++|+|+++.++.
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  200 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence            9999999887  455555 8889999999999988773   899999999999999999889999999999999875543


Q ss_pred             EeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~  311 (432)
                         ++.|+.|++||+++........+...+.+++|+|++++|++++.++. |++||+++++.. .+.  .|...|.+++|
T Consensus       201 ---~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~-~~~--~~~~~v~~~~~  273 (337)
T 1gxr_A          201 ---GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKY-QLH--LHESCVLSLKF  273 (337)
T ss_dssp             ---EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEE-EEC--CCSSCEEEEEE
T ss_pred             ---EecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeE-EEc--CCccceeEEEE
Confidence               23799999999998776666678899999999999999999999999 999999988765 333  37789999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccC
Q 014007          312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ  391 (432)
Q Consensus       312 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  391 (432)
                      +|++++|++++.||.|++||+.+++.                                    .....|...|.+++|+|+
T Consensus       274 ~~~~~~l~~~~~dg~i~~~~~~~~~~------------------------------------~~~~~~~~~v~~~~~s~~  317 (337)
T 1gxr_A          274 AYCGKWFVSTGKDNLLNAWRTPYGAS------------------------------------IFQSKESSSVLSCDISVD  317 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCE------------------------------------EEEEECSSCEEEEEECTT
T ss_pred             CCCCCEEEEecCCCcEEEEECCCCeE------------------------------------EEEecCCCcEEEEEECCC
Confidence            99999999999999999999998762                                    123457788999999999


Q ss_pred             CCEEEEEecCCeEEEEEe
Q 014007          392 KNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       392 ~~~l~~~~~dg~v~iw~~  409 (432)
                      +++|++++.||.|++|++
T Consensus       318 ~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          318 DKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SCEEEEEETTSCEEEEEE
T ss_pred             CCEEEEecCCCeEEEEEE
Confidence            999999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.3e-38  Score=283.78  Aligned_cols=244  Identities=14%  Similarity=0.191  Sum_probs=217.7

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~  197 (432)
                      +.+. +|...|.+++|+|++..+++++.|     |.|++||+.+++.+..+. |..+|.+++|++++.++++   |+.|+
T Consensus         7 ~~~~-~h~~~V~~~~fsp~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            7 KTFS-NRSDRVKGIDFHPTEPWVLTTLYS-----GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             EEEE-EECSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             Eeec-CCCCceEEEEECCCCCEEEEEcCC-----CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence            4555 788999999999999999999999     999999999999999988 8899999999999998884   89999


Q ss_pred             EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ceeeeeccCCceeEEEEcC-CCCEEE
Q 014007          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQ-DGQLLA  274 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~sp-~~~~l~  274 (432)
                      +||+.+++.+..+..|...+..++|+|+++.+  ++ |+.|+.|++||++.+  ....+.+|...|.+++|+| ++.+|+
T Consensus        81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l--~s-gs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYV--LS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEE--EE-EETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEE--EE-ECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence            99999999999999999999999999998754  33 458999999999875  2356789999999999999 678999


Q ss_pred             EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC--CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS--NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (432)
Q Consensus       275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (432)
                      +|+.|+. |++||+++++....+..+ +...+..+.|+|  ++++|++++.|++|++||+++++.               
T Consensus       158 sgs~D~~-v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~---------------  220 (304)
T 2ynn_A          158 SGCLDRT-VKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC---------------  220 (304)
T ss_dssp             EEETTSE-EEEEETTCSSCSEEEECC-CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE---------------
T ss_pred             EEeCCCe-EEEEECCCCCccceeccC-CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc---------------
Confidence            9999999 999999988887777654 557899999987  788999999999999999988752               


Q ss_pred             CCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                          +..+.+|.+.|..++|+|++++|++|+.||.|++|++..
T Consensus       221 --------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          221 --------------------VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             --------------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             --------------------ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence                                456889999999999999999999999999999999744

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.8e-38  Score=291.31  Aligned_cols=283  Identities=12%  Similarity=0.118  Sum_probs=233.2

Q ss_pred             ccCCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPL  155 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~  155 (432)
                      ....+|...|++++|+|++ ++|++|+ |+.|+||++.+.+........ +|...|.+++|++ ++..+++++.|     
T Consensus        67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d-----  140 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM-GPGDAITGMKFNQFNTNQLFVSSIR-----  140 (383)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC-STTCBEEEEEEETTEEEEEEEEETT-----
T ss_pred             EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC-CcCCceeEEEeCCCCCCEEEEEeCC-----
Confidence            4567899999999999999 8999998 555999999877766444443 6899999999999 78999999998     


Q ss_pred             CeEEEEeCCCCceeEEee----cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          156 NKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      +.|++||+.. ..+..+.    +...|.+++|+|++.++++   |+.|++||+ +++.+..+..|...+..++|+|+++.
T Consensus       141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred             CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC
Confidence            9999999985 4455554    3478999999999998884   899999999 57888889999999999999999985


Q ss_pred             EEEEeecCCCCcEEEEEccC----CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC-
Q 014007          229 LVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-  302 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~-  302 (432)
                      +++.  ++.|+.|++||++.    .......+|...|.+++|+| ++++|++++.|+. |++||+++++.+..+..+.+ 
T Consensus       219 ~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~  295 (383)
T 3ei3_B          219 LMAT--SSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPHR  295 (383)
T ss_dssp             EEEE--EETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCBC
T ss_pred             EEEE--EeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCcccccccccccc
Confidence            4433  34799999999997    44444458999999999999 9999999999999 99999999988777775321 


Q ss_pred             ----c----------CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceee
Q 014007          303 ----R----------AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS  368 (432)
Q Consensus       303 ----~----------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (432)
                          .          ..+..++|+|++++  +++.||.|++||+.+++.                               
T Consensus       296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~-------------------------------  342 (383)
T 3ei3_B          296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL-------------------------------  342 (383)
T ss_dssp             CCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE-------------------------------
T ss_pred             ccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce-------------------------------
Confidence                1          23445667777766  677899999999998773                               


Q ss_pred             cceeeEEEEe--cCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          369 SEWSVAQFRL--VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       369 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                          +..+.+  |.+.+..++|+|++++|++|+ ||.|+||+++
T Consensus       343 ----~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          343 ----VHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             ----EEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred             ----eeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence                334554  457788889999999999997 9999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.7e-37  Score=303.27  Aligned_cols=288  Identities=19%  Similarity=0.260  Sum_probs=246.0

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .....+|...|++++|+|++++|++++. +.|++|+.+.. ..  ..+. +|...+.+++|+|++..+++++.|     +
T Consensus       255 ~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~--~~~~-~h~~~v~~~~~~~~~~~l~t~~~d-----~  325 (577)
T 2ymu_A          255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LL--QTLT-GHSSSVWGVAFSPDGQTIASASDD-----K  325 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EE--EEEe-cCCCCeEEEEECCCCCEEEEEeCC-----C
Confidence            3456789999999999999999999884 45999997543 22  3454 688999999999999999999998     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      .|++||.... .+..+. |...|.+++|+|++.++++   |+.|++||. +++.+..+..|...+..++|+|+++.++. 
T Consensus       326 ~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-  402 (577)
T 2ymu_A          326 TVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS-  402 (577)
T ss_dssp             CEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEE-
T ss_pred             eEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEE-
Confidence            9999997654 455555 8999999999999998884   889999995 67888889999999999999999986643 


Q ss_pred             eecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s  312 (432)
                        ++.|+.|++||.....+..+.+|...|++++|+|++++|++++.|+. |++||. +++.+..+..  |...|.+++|+
T Consensus       403 --~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-v~~w~~-~~~~~~~~~~--~~~~v~~~~~s  476 (577)
T 2ymu_A          403 --ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFS  476 (577)
T ss_dssp             --EETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEEC
T ss_pred             --EeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-EEEEEC-CCCEEEEEcC--CCCCEEEEEEc
Confidence              34799999999887888889999999999999999999999999999 999995 6778888875  66899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  392 (432)
                      |++++|++++.|+.|++||.. ++.                                   +..+.+|.+.|++++|+||+
T Consensus       477 pd~~~las~~~d~~i~iw~~~-~~~-----------------------------------~~~~~~h~~~v~~l~~s~dg  520 (577)
T 2ymu_A          477 PDGQTIASASDDKTVKLWNRN-GQL-----------------------------------LQTLTGHSSSVRGVAFSPDG  520 (577)
T ss_dssp             TTSCEEEEEETTSEEEEEETT-SCE-----------------------------------EEEEECCSSCEEEEEECTTS
T ss_pred             CCCCEEEEEeCCCEEEEEcCC-CCE-----------------------------------EEEEeCCCCCEEEEEEcCCC
Confidence            999999999999999999953 331                                   45678899999999999999


Q ss_pred             CEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007          393 NTVVILGMDGSFYRCQFDPVNGGEMTQLEY  422 (432)
Q Consensus       393 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~  422 (432)
                      ++|++++.||.|++|+.   +++.+..+..
T Consensus       521 ~~l~s~~~dg~v~lwd~---~~~~~~~~~~  547 (577)
T 2ymu_A          521 QTIASASDDKTVKLWNR---NGQLLQTLTG  547 (577)
T ss_dssp             SCEEEEETTSEEEEECT---TSCEEEEEEC
T ss_pred             CEEEEEECcCEEEEEeC---CCCEEEEEcC
Confidence            99999999999999985   3444444443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=292.05  Aligned_cols=306  Identities=9%  Similarity=0.121  Sum_probs=240.5

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEE-EEEc----CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC---eEEEecCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCF-AAGT----DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPD  150 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l-~~~~----~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d  150 (432)
                      ....+|...|++++|+|++..| ++|+    |+.|+||++.+.+......+  +|...|.++.|+++   +..+++++.|
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI--EKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE--EESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee--cccCcEEEEEEcCCCCCCceEEEecCC
Confidence            4456799999999999999655 5554    34499999998776644444  48889999999998   6889999988


Q ss_pred             CCCCCCeEEEEeCCCCc-eeEEee-cCCceEEEEE------ecCccEEEe---CCeEEEEEcCCCe-eeEEEeeccC---
Q 014007          151 PQYPLNKVMIWDDHQSR-CIGELS-FRSEVRSVKL------RRDRIIVVL---EQKIFVYNFADLK-LLHQIETIAN---  215 (432)
Q Consensus       151 ~~~~~~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~------~~~~~~~~~---d~~i~i~d~~~~~-~~~~~~~~~~---  215 (432)
                           +.|++||+.+++ .+..+. |...|.++.|      ++++.++++   |+.|++||+++++ .+..+..+..   
T Consensus        90 -----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  164 (357)
T 3i2n_A           90 -----GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK  164 (357)
T ss_dssp             -----SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred             -----CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence                 999999999987 788887 9999999965      678888774   8999999999876 6777765544   


Q ss_pred             -CcceEE----EecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcC---CCCEEEEEcCCCceEEEEE
Q 014007          216 -PKGLCA----VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ---DGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       216 -~~~~~~----~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp---~~~~l~~~~~dg~~i~vwd  287 (432)
                       .+..++    |+++++.++.   ++.|+.|++||+++........|...|.+++|+|   ++.+|++++.|+. |++||
T Consensus       165 ~~v~~~~~~~~~~~~~~~l~~---~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d  240 (357)
T 3i2n_A          165 RDCWTVAFGNAYNQEERVVCA---GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFD  240 (357)
T ss_dssp             CCEEEEEEECCCC-CCCEEEE---EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEE
T ss_pred             CceEEEEEEeccCCCCCEEEE---EccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEe
Confidence             566666    5677775433   3478999999999988877788999999999999   9999999999999 99999


Q ss_pred             CCCCceEEEEE---eCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007          288 TLDGTLLQEVR---RGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (432)
Q Consensus       288 ~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                      +++++.+..+.   ...|...|.+++|+|+++ +|++++.||.|++||+++..............               
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~---------------  305 (357)
T 3i2n_A          241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM---------------  305 (357)
T ss_dssp             EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC---------------
T ss_pred             CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc---------------
Confidence            98876554443   113678999999999998 89999999999999999876432221100000               


Q ss_pred             cceeecceeeEEEEecCCCceEEEEccCCCEEE-EEecCCeEEEEEecC
Q 014007          364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV-ILGMDGSFYRCQFDP  411 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~  411 (432)
                       ........+..+..|.+.|++++|+|++++|+ +++.||.|++|++..
T Consensus       306 -~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          306 -GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             -CCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             -ccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence             00011123567888999999999999999998 899999999999843

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.9e-38  Score=315.02  Aligned_cols=304  Identities=15%  Similarity=0.173  Sum_probs=235.9

Q ss_pred             ccCCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCee---EEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~  153 (432)
                      ..+.+|.+.|++|+|+|++ .+|++|+ |+.|+||++.....   .....+. +|...|.+++|++++..+++++.|   
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~D---  451 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWD---  451 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT---
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCC---
Confidence            3567899999999999875 6888888 55599999865322   2234454 799999999999999999999999   


Q ss_pred             CCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEE---eeccCCcceEEEecCC
Q 014007          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGV  226 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~  226 (432)
                        +.|++||+.+++.+..+. |...|.+++|+|++.++++   |++|++||+.........   ..|...+.+++|+|++
T Consensus       452 --g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          452 --GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             --SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             --CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence              999999999999998888 9999999999999988874   899999998654433222   3467778999999998


Q ss_pred             CcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007          227 GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (432)
Q Consensus       227 ~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~  305 (432)
                      ....+++ ++.|+.|++||++... ...+.+|...|.+++|+|+|++|++|+.|+. |++||+++++++..+.   +...
T Consensus       530 ~~~~l~s-~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~---~~~~  604 (694)
T 3dm0_A          530 LQPTIVS-ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLE---ANSV  604 (694)
T ss_dssp             SSCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCB---CSSC
T ss_pred             CcceEEE-EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEec---CCCc
Confidence            5544554 4589999999998854 4567899999999999999999999999999 9999999999887776   4468


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI  385 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  385 (432)
                      |.+++|+|++.+|++++ ++.|+|||+++++.+.....+........              ....  ......+.-.+++
T Consensus       605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~  667 (694)
T 3dm0_A          605 IHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKA--------------DNSG--PAATKRKVIYCTS  667 (694)
T ss_dssp             EEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------------------------CCCCEEE
T ss_pred             EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccc--------------cccc--cccCCceeEEeee
Confidence            99999999999887775 56699999998764432211100000000              0000  0001112224788


Q ss_pred             EEEccCCCEEEEEecCCeEEEEEec
Q 014007          386 VAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       386 ~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                      ++|+|||++|++|+.||.|+||++.
T Consensus       668 l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          668 LNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEecc
Confidence            9999999999999999999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.1e-38  Score=290.31  Aligned_cols=313  Identities=13%  Similarity=0.083  Sum_probs=238.1

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      ...|.+.|++++|+|++++|++++ ++.|++|++++.+......+. +|...|.+++|++++..+++++.|     +.|+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~   77 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTD-----RNAY   77 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETT-----SCEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCC-----CeEE
Confidence            345899999999999999999997 555999999887643445665 788999999999999999999998     9999


Q ss_pred             EEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCee---eEEE-eeccCCcceEEEecCCCcE
Q 014007          160 IWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKL---LHQI-ETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       160 iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~  229 (432)
                      +||+.+++....+.   |...|.+++|+|++.++++   |+.|++||++.++.   ...+ ..|...+..++|+|+++.+
T Consensus        78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  157 (372)
T 1k8k_C           78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL  157 (372)
T ss_dssp             EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred             EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence            99998887555443   8899999999999988884   89999999988652   2333 4567889999999998754


Q ss_pred             EEEeecCCCCcEEEEEcc------------------C-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC
Q 014007          230 VLVCPGLQKGQVRVEHYA------------------S-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~------------------~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~  290 (432)
                      +.   ++.|+.|++||++                  . .....+..|...|.+++|+|++++|++++.|+. |++||+++
T Consensus       158 ~~---~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~  233 (372)
T 1k8k_C          158 AA---GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADK  233 (372)
T ss_dssp             EE---EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGG
T ss_pred             EE---EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCC
Confidence            32   3479999999964                  2 345566789999999999999999999999999 99999999


Q ss_pred             CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC--CC--CCCCCCCCCCCCCCCCCCCceeEeecccce
Q 014007          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV--NS--GSARSEPRSTSDPTLPTSSLSFIKGVLPKY  366 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (432)
                      ++++..+..  |...|.+++|+|++++|+++ .|+.|++|++.+  ++  .+.....+....... ......+.    ..
T Consensus       234 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~  305 (372)
T 1k8k_C          234 KMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG-LTARERFQ----NL  305 (372)
T ss_dssp             TTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC---------CHHHHHH----HC
T ss_pred             CceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh-cchhhhhh----hc
Confidence            999999985  56789999999999988888 899999999988  42  111111100000000 00000000    00


Q ss_pred             eecceee------EEE-EecCCCceEEEEc-cCC---CEEEEEecCCeEEEEEecC
Q 014007          367 FSSEWSV------AQF-RLVEGSPYIVAFG-HQK---NTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       367 ~~~~~~~------~~~-~~~~~~v~~~~~s-~~~---~~l~~~~~dg~v~iw~~~~  411 (432)
                      .......      ..+ .+|.+.|++++|. ++|   ++|++|+.||.|++|+++.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          306 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             CCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence            0000000      112 3788999999976 566   9999999999999999854

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.2e-38  Score=290.21  Aligned_cols=288  Identities=15%  Similarity=0.197  Sum_probs=236.7

Q ss_pred             ccCCCCCCCeEEEEEcCC---CC--EEEEEcCCcEEEEEcCCCeeEEEe-ecc-cCcceeEEEEeeeCC----eEEEecC
Q 014007           79 STSSSPPPTLLHISFNQD---HG--CFAAGTDHGFRIYNCDPFREIFRR-DFE-RGGGIGVVEMLFRCN----ILALVGG  147 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~---~~--~l~~~~~~~i~iw~~~~~~~~~~~-~~~-~~~~~~v~~~~~~~~----~~~~~s~  147 (432)
                      ....+|...|++++|+|+   +.  ++++++++.|++|++.+.+..... ... ..+...+.+++|+++    +..++++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            456689999999999984   33  556666778999999866544221 111 136678999999998    7899999


Q ss_pred             CCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEE---eeccCCcce
Q 014007          148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQI---ETIANPKGL  219 (432)
Q Consensus       148 ~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~---~~~~~~~~~  219 (432)
                      +.|     +.|++||+.+++.+..+. |...|.+++|+| ++.++++   |+.|++||+++++.+..+   ..|...+..
T Consensus        92 ~~d-----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  166 (366)
T 3k26_A           92 GSR-----GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS  166 (366)
T ss_dssp             ETT-----CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred             cCC-----CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence            998     999999999999999998 999999999999 8887774   899999999999988888   678889999


Q ss_pred             EEEecCCCcEEEEeecCCCCcEEEEEccCCcee-----------------------------eeeccCCceeEEEEcCCC
Q 014007          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-----------------------------FIMAHDSRIACFALTQDG  270 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-----------------------------~~~~~~~~i~~~~~sp~~  270 (432)
                      ++|+|+++.++.   ++.|+.|++||++.....                             ....|...|.+++|+  +
T Consensus       167 ~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  241 (366)
T 3k26_A          167 ADYDLLGEKIMS---CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G  241 (366)
T ss_dssp             EEECTTSSEEEE---EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred             EEECCCCCEEEE---ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence            999999875543   337999999999874321                             122399999999998  7


Q ss_pred             CEEEEEcCCCceEEEEECCCCce--------------EEEEEeCCCcCceEEEEECCC--CCEEEEEeCCCeEEEEEecC
Q 014007          271 QLLATSSTKGTLVRIFNTLDGTL--------------LQEVRRGADRAEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       271 ~~l~~~~~dg~~i~vwd~~~~~~--------------~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~  334 (432)
                      ++|++++.|+. |++||+++++.              +..+..  |...|.+++|+|+  +++|++++.||.|++||+.+
T Consensus       242 ~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          242 DLILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             TEEEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred             CEEEEEecCCE-EEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence            79999999999 99999988754              666664  6678999999999  99999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEec--CCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV--EGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                      ++....                               ....+..|  .+.|++++|+|++++|++++.||.|++|++.
T Consensus       319 ~~~~~~-------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          319 EDPHKA-------------------------------KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SSGGGC-------------------------------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCccc-------------------------------cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            763211                               13356666  6889999999999999999999999999973

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.4e-38  Score=291.35  Aligned_cols=286  Identities=11%  Similarity=0.161  Sum_probs=236.2

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe----eEEEeecccCcceeEEEEeeeCC----e---EEEe
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCN----I---LALV  145 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~----~---~~~~  145 (432)
                      ...+.+|.+.|++++|+|  ++|++|+ |+.|+||++.+.+    ......+. +|...|.++.|+++    +   ..++
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEE
Confidence            356788999999999999  6888887 5559999998776    11123444 68889999999999    8   8999


Q ss_pred             cCCCCCCCCCCeEEEEeCCCCce-----eEEee-c-----CCceEEEEEe----cCccE-EEe---CCeEEEEEcCC---
Q 014007          146 GGGPDPQYPLNKVMIWDDHQSRC-----IGELS-F-----RSEVRSVKLR----RDRII-VVL---EQKIFVYNFAD---  203 (432)
Q Consensus       146 s~~~d~~~~~~~v~iwd~~~~~~-----~~~~~-~-----~~~v~~~~~~----~~~~~-~~~---d~~i~i~d~~~---  203 (432)
                      +++.|     +.|++||+.+++.     +..+. |     ...|.+++|+    |++.+ +++   |+.|++||+++   
T Consensus        86 s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           86 TTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEcCC-----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence            99988     9999999998886     77776 6     4899999999    99987 763   89999999998   


Q ss_pred             ---CeeeE-----EEee-------ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeec---c---CCce
Q 014007          204 ---LKLLH-----QIET-------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMA---H---DSRI  261 (432)
Q Consensus       204 ---~~~~~-----~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~---~---~~~i  261 (432)
                         ++.+.     .+..       +...+.+++|+|++ .  +++ ++.|+.|++||++.. .+..+..   |   ...|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~--l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L--IAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  236 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E--EEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e--EEE-EeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence               66665     6643       67889999999998 3  333 458999999999874 4456677   8   9999


Q ss_pred             eEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCC-----------CcCceEEEEECCCCCEEEEEeCCCeE
Q 014007          262 ACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSSDKGTV  327 (432)
Q Consensus       262 ~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~dg~i  327 (432)
                      .+++|+|++++|++++.|   +. |++||+++++.+..+....           |...|.+++|+|++++|++++.||.|
T Consensus       237 ~~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  315 (397)
T 1sq9_A          237 RSVKFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  315 (397)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             ceEEECCCCCEEEEEecCCCCce-EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence            999999999999999999   99 9999999999998887511           56899999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE------ec---------------CCCceEE
Q 014007          328 HVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR------LV---------------EGSPYIV  386 (432)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~~  386 (432)
                      ++||+.+++.+                                   ..+.      .|               ...|+++
T Consensus       316 ~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~  360 (397)
T 1sq9_A          316 RFWDVKTKERI-----------------------------------TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV  360 (397)
T ss_dssp             EEEETTTTEEE-----------------------------------EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred             EEEEcCCCcee-----------------------------------EEEecccCcccchhhhhccccccccccCCceeEE
Confidence            99999887632                                   2334      44               8899999


Q ss_pred             EEccCC----------CEEEEEecCCeEEEEEecC
Q 014007          387 AFGHQK----------NTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       387 ~~s~~~----------~~l~~~~~dg~v~iw~~~~  411 (432)
                      +|+|++          ++|++++.||.|++|+++.
T Consensus       361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             EeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            999998          7999999999999999854

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-37  Score=292.16  Aligned_cols=297  Identities=16%  Similarity=0.195  Sum_probs=240.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw  161 (432)
                      .|.+.|++++|+|++++|++|+.++ |++|+. +++..  ..+. .|...+.++.|++++..+++++.|     +.|++|
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw  176 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGALL--NVLN-FHRAPIVSVKWNKDGTHIISMDVE-----NVTILW  176 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEE--EEEC-CCCSCEEEEEECTTSSEEEEEETT-----CCEEEE
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCee--eecc-CCCccEEEEEECCCCCEEEEEecC-----CeEEEE
Confidence            3788999999999999999998554 999994 34433  4454 688999999999999999999988     999999


Q ss_pred             eCCCCceeEEee-cCCc---------------eEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEe
Q 014007          162 DDHQSRCIGELS-FRSE---------------VRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (432)
Q Consensus       162 d~~~~~~~~~~~-~~~~---------------v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  223 (432)
                      |+.+++.+..+. +...               +.+++|++++.+++.  ++.|++||+++++.+..+..|...+..++|+
T Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  256 (425)
T 1r5m_A          177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN  256 (425)
T ss_dssp             ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred             ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence            999999888887 5555               999999999887773  8999999999999988898899999999999


Q ss_pred             cCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC
Q 014007          224 QGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (432)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~  302 (432)
                      |+++.++.   ++.|+.|++||++.. ....+..|...|.+++|+|++ +|++++.|+. |++||+++++.+..+..  |
T Consensus       257 ~~~~~l~~---~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~  329 (425)
T 1r5m_A          257 DTNKLLLS---ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALSIV--D  329 (425)
T ss_dssp             TTTTEEEE---EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEEEC--T
T ss_pred             CCCCEEEE---EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEeccc--C
Confidence            99885443   347999999999884 456677899999999999999 9999999999 99999999999988885  5


Q ss_pred             cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC-
Q 014007          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-  381 (432)
Q Consensus       303 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  381 (432)
                      ...|.+++|+|++++|++++.||.|++||+.+++.......         ....    ..+.  ......+..+..|.. 
T Consensus       330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---------~~~~----~~~~--~~~~~~~~~~~~~~~~  394 (425)
T 1r5m_A          330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY---------GNRD----GILN--PLPIPLYASYQSSQDN  394 (425)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------------------------CEECCEEEEECCTTCC
T ss_pred             CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeee---------cccc----cccC--cccchhhhhhcCcccC
Confidence            68999999999999999999999999999987652211000         0000    0000  000113556778866 


Q ss_pred             -CceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          382 -SPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       382 -~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                       .|.+++|+|++++|++++.||.|++|+++
T Consensus       395 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          395 DYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             CceEEEEccCCCceEEEEecCceEEEEeec
Confidence             89999999999999999999999999984

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.4e-37  Score=284.06  Aligned_cols=279  Identities=11%  Similarity=0.066  Sum_probs=214.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC--------CcEEEEEcCCCeeE--------EEeecccCcceeEEEEeeeCCeEEE----
Q 014007           85 PPTLLHISFNQDHGCFAAGTD--------HGFRIYNCDPFREI--------FRRDFERGGGIGVVEMLFRCNILAL----  144 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~--------~~i~iw~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~----  144 (432)
                      ..+|++++|+|||++|++|+.        +.|++|+++.....        ....+. ++...+.++.++.+..+.    
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~-~~~~~v~s~~~~~~~~~~g~~~   92 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALE-DNDDSPTAIDASKGIILVGCNE   92 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECC-TTSCCCCEEEEETTEEEEECCC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEcc-CCCCceEEEEeCCCEEEEEECC
Confidence            357999999999999999862        23999998754321        112343 567778888887664432    


Q ss_pred             -----ecCCCCCCCCCCeEEEEeCCCCcee----EEee------cCCceEEEEEecCccEEE--e---CCeEEEEEcCCC
Q 014007          145 -----VGGGPDPQYPLNKVMIWDDHQSRCI----GELS------FRSEVRSVKLRRDRIIVV--L---EQKIFVYNFADL  204 (432)
Q Consensus       145 -----~s~~~d~~~~~~~v~iwd~~~~~~~----~~~~------~~~~v~~~~~~~~~~~~~--~---d~~i~i~d~~~~  204 (432)
                           ++++.|     +.+++|++......    ....      +...+..++|+|||++++  +   |++|+|||++++
T Consensus        93 ~~~~l~s~~~d-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~  167 (365)
T 4h5i_A           93 NSTKITQGKGN-----KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL  167 (365)
T ss_dssp             CHHHHHHTSCC-----CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred             CccEEEEecCC-----CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence                 344556     89999998765321    1111      234588999999999875  2   789999999999


Q ss_pred             eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce---eeeeccCCceeEEEEcCCCCEEEEEcCCC-
Q 014007          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKG-  280 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-  280 (432)
                      +.+..+. +...|..++|+|+++.++.   + .++.+.+|+...+..   .....|...|.+++|+|+++++++++.|+ 
T Consensus       168 ~~~~~~~-~~~~V~~v~fspdg~~l~s---~-s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~  242 (365)
T 4h5i_A          168 TEKFEIE-TRGEVKDLHFSTDGKVVAY---I-TGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG  242 (365)
T ss_dssp             EEEEEEE-CSSCCCEEEECTTSSEEEE---E-CSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred             cEEEEeC-CCCceEEEEEccCCceEEe---c-cceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence            9988885 6778999999999985533   2 245677777666433   23457888999999999999999999887 


Q ss_pred             ---ceEEEEECCCCceE----EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007          281 ---TLVRIFNTLDGTLL----QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT  353 (432)
Q Consensus       281 ---~~i~vwd~~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (432)
                         . +++||+......    ..+.  .|...|++++|+|||++||+|+.|++|+|||+++++.                
T Consensus       243 ~~~~-i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~----------------  303 (365)
T 4h5i_A          243 KGIV-LTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM----------------  303 (365)
T ss_dssp             CCEE-EEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE----------------
T ss_pred             ceeE-Eeecccccceecceeeeeec--CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE----------------
Confidence               5 888998776542    2333  3668999999999999999999999999999998763                


Q ss_pred             CCceeEeecccceeecceeeEE-EEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          354 SSLSFIKGVLPKYFSSEWSVAQ-FRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                                         +.. +.+|.+.|++|+|+|||++||+|+.|++|+||++...
T Consensus       304 -------------------~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          304 -------------------SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             -------------------EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             -------------------EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence                               223 3579999999999999999999999999999999654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.8e-37  Score=277.03  Aligned_cols=240  Identities=16%  Similarity=0.237  Sum_probs=215.9

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      .+.+|...|.+++|++++.++++++ |+.|++||+.+++..  ..+. .+...+..++|+|++..+++++.+     +.|
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~--~~~~-~~~~~~~~~~~spdg~~l~~g~~d-----g~v  146 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQI--KSID-AGPVDAWTLAFSPDSQYLATGTHV-----GKV  146 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCTTCCCCEEECTTSSEEEEECTT-----SEE
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEE--EEEe-CCCccEEEEEECCCCCEEEEEcCC-----CcE
Confidence            4678999999999999999999998 555999999988766  4444 567788899999999999999999     999


Q ss_pred             EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      ++||+.+++....+. +...|.+++|+|++.++++   |+.|++||+++++.+..+..|..++..++|+|+++.+  ++ 
T Consensus       147 ~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l--~s-  223 (321)
T 3ow8_A          147 NIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL--VT-  223 (321)
T ss_dssp             EEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEE--EE-
T ss_pred             EEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEE--EE-
Confidence            999999999888887 7889999999999999884   8999999999999999999999999999999998744  33 


Q ss_pred             cCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007          235 GLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       235 g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~  313 (432)
                      |+.|+.|++||++.. ....+.+|...|.+++|+|++++|++++.|+. |++||+++++++..+..  |...|.+++|+|
T Consensus       224 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~--h~~~v~~v~~s~  300 (321)
T 3ow8_A          224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFFD--HQDQVWGVKYNG  300 (321)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC--CSSCEEEEEECT
T ss_pred             EcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEcC--CCCcEEEEEECC
Confidence            458999999999874 45567899999999999999999999999999 99999999999999875  668999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEec
Q 014007          314 NAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       314 ~~~~l~~~~~dg~i~iwd~~  333 (432)
                      ++++|++++.||.|+|||..
T Consensus       301 ~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          301 NGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TSSEEEEEETTCCEEEEECC
T ss_pred             CCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-37  Score=288.71  Aligned_cols=248  Identities=14%  Similarity=0.220  Sum_probs=222.0

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA  202 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~  202 (432)
                      +|...|.++.|+|++..+++++.|     +.|++||+.+++.+..+. |...|.+++|+|++.++++   |++|++||+.
T Consensus       106 gh~~~V~~~~~~p~~~~l~s~s~D-----g~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFSVMVSASED-----ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESS-----SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            799999999999999999999999     999999999999999998 9999999999999998884   8999999999


Q ss_pred             CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCc
Q 014007          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGT  281 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~  281 (432)
                      +++++..+..|...+.+++|+|+++.++  + |+.|+.|++||++++ .+..+.+|...|.++.|+|++.+|++|+.|+.
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~--s-~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIV--S-ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEE--E-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEE--E-EeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence            9999999999999999999999988543  3 348999999999885 45678899999999999999999999999999


Q ss_pred             eEEEEECCCCceEEEEEeCCCcCceEEEEECCC--------------------CCEEEEEeCCCeEEEEEecCCCCCCCC
Q 014007          282 LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN--------------------AQWLAVSSDKGTVHVFNLKVNSGSARS  341 (432)
Q Consensus       282 ~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~  341 (432)
                       |++||++++++...+..  |...|.+++|+|+                    |.+|++|+.|+.|++||+++++.    
T Consensus       258 -v~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~----  330 (410)
T 1vyh_C          258 -VRVWVVATKECKAELRE--HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC----  330 (410)
T ss_dssp             -EEEEETTTCCEEEEECC--CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE----
T ss_pred             -EEEEECCCCceeeEecC--CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce----
Confidence             99999999999988875  6689999999996                    67899999999999999988762    


Q ss_pred             CCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          342 EPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                                                     +..+.+|.+.|.+++|+|++++|++|+.||.|++|++..  ++.+..+.
T Consensus       331 -------------------------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~--~~~~~~~~  377 (410)
T 1vyh_C          331 -------------------------------LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN--KRCMKTLN  377 (410)
T ss_dssp             -------------------------------EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT--SCCCEEEE
T ss_pred             -------------------------------EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CceEEEEc
Confidence                                           456788999999999999999999999999999998743  44444444


Q ss_pred             e
Q 014007          422 Y  422 (432)
Q Consensus       422 ~  422 (432)
                      .
T Consensus       378 ~  378 (410)
T 1vyh_C          378 A  378 (410)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-38  Score=296.73  Aligned_cols=316  Identities=13%  Similarity=0.121  Sum_probs=240.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCC--eeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCe
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNK  157 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~  157 (432)
                      ..|...|++++|+|++++|++|+. +.|++|++...  .......+. +|...|.++.|+++ +..+++++.|     +.
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d-----g~  137 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNN-----GE  137 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSS-----SC
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCC-----Ce
Confidence            358889999999999999999984 55999999761  111224554 68899999999998 8899999998     99


Q ss_pred             EEEEeCCCCc------eeEEe---e-cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEeec------cCCc
Q 014007          158 VMIWDDHQSR------CIGEL---S-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETI------ANPK  217 (432)
Q Consensus       158 v~iwd~~~~~------~~~~~---~-~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~------~~~~  217 (432)
                      |++||+.+++      ....+   . |...|.+++|+|+ +.++++   |+.|++||+++++.+..+..+      ...+
T Consensus       138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (416)
T 2pm9_A          138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL  217 (416)
T ss_dssp             EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred             EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence            9999999876      33333   3 8889999999998 666663   899999999999998888776      6789


Q ss_pred             ceEEEecCCCcEEEEeecCCCC---cEEEEEccCC--ceeeee-ccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCC
Q 014007          218 GLCAVSQGVGSLVLVCPGLQKG---QVRVEHYASK--RTKFIM-AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLD  290 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~---~i~i~d~~~~--~~~~~~-~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~  290 (432)
                      ..++|+|++..+++++  +.|+   .|++||++..  ....+. +|...|.+++|+| ++++|++++.|+. |++||+++
T Consensus       218 ~~~~~~~~~~~~l~~~--~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~  294 (416)
T 2pm9_A          218 SVVEWHPKNSTRVATA--TGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPES  294 (416)
T ss_dssp             EEEEECSSCTTEEEEE--ECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSS
T ss_pred             EEEEECCCCCCEEEEE--ECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCC
Confidence            9999999986654433  3677   9999999983  456667 8999999999999 9999999999999 99999999


Q ss_pred             CceEEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEee-c--ccce
Q 014007          291 GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG-V--LPKY  366 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~  366 (432)
                      ++++..+..  |...|.+++|+|++ .+|++++.||.|++||+.+.+.............   .....++.. .  ....
T Consensus       295 ~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  369 (416)
T 2pm9_A          295 AEQLSQFPA--RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQ---ESETDFWNNVSREESKE  369 (416)
T ss_dssp             CCEEEEEEC--SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------------CCS
T ss_pred             CccceeecC--CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccccc---CCccccccccccccccc
Confidence            999999985  56899999999999 8999999999999999998775443211000000   000000000 0  0000


Q ss_pred             eecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          367 FSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      ......+.....|...+.+++|+|||++|++++.||.|+||++..
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          370 KPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             CCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             ccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence            000000011123566788999999999999999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=281.67  Aligned_cols=242  Identities=13%  Similarity=0.131  Sum_probs=199.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEe--ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR--DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      .|...|++++|+|++.+++++.|+.|+|||+++++.....  .+. +|...|.+++|++++..+++++.|     ++|++
T Consensus        80 ~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~-~H~~~V~~v~~spdg~~l~sgs~d-----~~i~i  153 (344)
T 4gqb_B           80 QTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKY-EHDDIVSTVSVLSSGTQAVSGSKD-----ICIKV  153 (344)
T ss_dssp             EESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred             ccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeecccc-CCCCCEEEEEECCCCCEEEEEeCC-----CeEEE
Confidence            3567899999999976554444666999999887654322  232 689999999999999999999999     99999


Q ss_pred             EeCCCCceeEEee-cCCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEEee--ccCCcceEEEecCCCcEEEEe
Q 014007          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      ||+.+++++..+. |...|.+++|++++. ++++   |++|++||+++++....+..  +...+.+++|+|++..+++ +
T Consensus       154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-s  232 (344)
T 4gqb_B          154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV-F  232 (344)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE-E
T ss_pred             EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE-E
Confidence            9999999999998 999999999999874 4442   89999999999988777643  4456778999998776543 3


Q ss_pred             ecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007          234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~  311 (432)
                       |+.|+.|++||+++ ..+..+.+|...|++++|+|++ ++|++|+.|++ |+|||+.+++++. +.  .|...|++++|
T Consensus       233 -g~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~~-~~--~H~~~V~~v~~  307 (344)
T 4gqb_B          233 -GDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELFR-SQ--AHRDFVRDATW  307 (344)
T ss_dssp             -EETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEEE-EC--CCSSCEEEEEE
T ss_pred             -eccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEEE-Ec--CCCCCEEEEEE
Confidence             45899999999987 4567789999999999999998 57999999999 9999999987654 43  37799999999


Q ss_pred             CCCCC-EEEEEeCCCeEEEEEecCCC
Q 014007          312 SSNAQ-WLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       312 s~~~~-~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +|+++ +|++++.||+|++|++.+..
T Consensus       308 sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          308 SPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             eCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            99986 57789999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=285.37  Aligned_cols=282  Identities=17%  Similarity=0.198  Sum_probs=234.8

Q ss_pred             CCCCCCCeEEEEEcCCCC-EEEEEcCC-cEEEEEc----CCCee------EEE--eeccc-----CcceeEEEEeeeCCe
Q 014007           81 SSSPPPTLLHISFNQDHG-CFAAGTDH-GFRIYNC----DPFRE------IFR--RDFER-----GGGIGVVEMLFRCNI  141 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~-~l~~~~~~-~i~iw~~----~~~~~------~~~--~~~~~-----~~~~~v~~~~~~~~~  141 (432)
                      ...|.+.|++++|+|+++ +|++|+.+ .|++|++    .+++.      ...  ..+..     +|...|.+++|++++
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            344668999999999999 99999854 4999999    76662      211  11211     157799999999999


Q ss_pred             EEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCC-
Q 014007          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANP-  216 (432)
Q Consensus       142 ~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~-  216 (432)
                      ..+++++.|     +.|++|| .+++.+..+. |...|.+++|+|++.++++   |+.|++||+.+++.+..+..+... 
T Consensus       121 ~~l~~~~~d-----g~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  194 (425)
T 1r5m_A          121 NSIVTGVEN-----GELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG  194 (425)
T ss_dssp             SEEEEEETT-----SCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred             CEEEEEeCC-----CeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence            999999998     9999999 6778888887 9999999999999988773   899999999999998888777666 


Q ss_pred             --------------cceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCc
Q 014007          217 --------------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGT  281 (432)
Q Consensus       217 --------------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~  281 (432)
                                    +..++|++++.  + ++ ++.++.|++||++.. ....+..|...|.+++|+|++++|++++.|+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  270 (425)
T 1r5m_A          195 SSINAENHSGDGSLGVDVEWVDDDK--F-VI-PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT  270 (425)
T ss_dssp             -----------CCCBSCCEEEETTE--E-EE-ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             cceeeccccCCcceeeEEEEcCCCE--E-EE-EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE
Confidence                          88899999753  2 32 347999999999984 44567789999999999999999999999999


Q ss_pred             eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEee
Q 014007          282 LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG  361 (432)
Q Consensus       282 ~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (432)
                       |++||+++++.+..+..  |...|.+++|+|++ +|++++.||.|++||+++++.                        
T Consensus       271 -i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~------------------------  322 (425)
T 1r5m_A          271 -LRIWHGGNGNSQNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL------------------------  322 (425)
T ss_dssp             -EEEECSSSBSCSEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE------------------------
T ss_pred             -EEEEECCCCccceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE------------------------
Confidence             99999999998888864  66899999999999 999999999999999988752                        


Q ss_pred             cccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          362 VLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                 +..+..|...|.+++|+|++++|++++.||.|++|++..
T Consensus       323 -----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          323 -----------LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             -----------EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             -----------eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence                       345677888999999999999999999999999999865

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-36  Score=270.57  Aligned_cols=277  Identities=13%  Similarity=0.140  Sum_probs=231.5

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ...+.+|.+.|++++| +++++|++|+.++ |++|++.+.+..  ..+. .|...+.+++|++++..+++++.|     +
T Consensus        11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----g   81 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG--TVVY-TGQGFLNSVCYDSEKELLLFGGKD-----T   81 (313)
T ss_dssp             EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE--EEEE-ECSSCEEEEEEETTTTEEEEEETT-----S
T ss_pred             HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE--EEee-cCCccEEEEEECCCCCEEEEecCC-----C
Confidence            4567889999999999 9999999998555 999999877655  3343 578899999999999999999999     9


Q ss_pred             eEEEEeCCCC---ceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEec-CCCc
Q 014007          157 KVMIWDDHQS---RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GVGS  228 (432)
Q Consensus       157 ~v~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  228 (432)
                      .|++|++...   +.+..+. |...|.++.|.  +.+++   .|+.|++||  .++....+..+...+..+.+.+ +++.
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK  157 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEec--CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence            9999998764   4566666 89999999994  33444   289999999  6778888888999999999988 5554


Q ss_pred             EEEEeecCCCCcEEEEEccCCceeeeec-cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          229 LVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      ++ +  ++.|+.|++||.. .....+.. |...+.+++|+|++. |++++.|+. |++||+++++.+..+..  |...|.
T Consensus       158 l~-~--~~~d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~  229 (313)
T 3odt_A          158 FL-T--ASADKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYEG--HESFVY  229 (313)
T ss_dssp             EE-E--EETTSCEEEEETT-EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEE
T ss_pred             EE-E--EECCCCEEEEecC-ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhhc--CCceEE
Confidence            33 2  3479999999943 33444555 999999999999998 899999999 99999999999999985  668999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  387 (432)
                      +++|+|++ .|++++.||.|++||+.+++.                                   +..+..|.+.|.+++
T Consensus       230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~-----------------------------------~~~~~~~~~~i~~~~  273 (313)
T 3odt_A          230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSL-----------------------------------KQVITLPAISIWSVD  273 (313)
T ss_dssp             EEEECTTS-CEEEEETTSEEEEECTTTCCE-----------------------------------EEEEECSSSCEEEEE
T ss_pred             EEEEecCC-CEEEEecCCEEEEEECCCCce-----------------------------------eEEEeccCceEEEEE
Confidence            99999999 588999999999999988762                                   445778888999999


Q ss_pred             EccCCCEEEEEecCCeEEEEEecCC
Q 014007          388 FGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       388 ~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                      |+|+++ +++++.||.|++|+++..
T Consensus       274 ~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          274 CMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             ECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             EccCCC-EEEEeCCCcEEEEeCCCC
Confidence            999998 667999999999998653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.4e-36  Score=282.24  Aligned_cols=274  Identities=14%  Similarity=0.147  Sum_probs=233.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~  166 (432)
                      .++.|+||++ ++||+|.|+.|+|||..+++......+. +|...|.+++|++++.++++|+.|     +.|++||+.++
T Consensus       107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~-~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~  179 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQME-QPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQ  179 (420)
T ss_dssp             TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECC-STTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTT
T ss_pred             cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEec-CCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCC
Confidence            4678999975 5899999999999999998876555554 678899999999999999999999     99999999999


Q ss_pred             ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC-CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007          167 RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       167 ~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (432)
                      +.+..+. |...+.++.+++  .++++   |+.+++||... ...+..+..|...+..+.+++++..++  + ++.|+.+
T Consensus       180 ~~~~~~~~h~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~--s-~~~D~~v  254 (420)
T 4gga_A          180 KRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA--S-GGNDNLV  254 (420)
T ss_dssp             EEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE--E-EETTSCE
T ss_pred             cEEEEEeCCCCceEEEeeCC--CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeee--e-eeccccc
Confidence            9999988 899999888764  45552   89999999886 455677888999999999999998554  3 3489999


Q ss_pred             EEEEccCCc-----eeeeeccCCceeEEEEcCCCC-EEEE--EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007          242 RVEHYASKR-----TKFIMAHDSRIACFALTQDGQ-LLAT--SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       242 ~i~d~~~~~-----~~~~~~~~~~i~~~~~sp~~~-~l~~--~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~  313 (432)
                      ++|+...+.     +.....|...|.+++|+|++. ++++  |+.|+. |++||+.+++++..+..   ...+.++.|++
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~---~~~v~~~~~~~  330 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDA---HSQVCSILWSP  330 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEEC---SSCEEEEEEET
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeecc---ccceeeeeecC
Confidence            999998743     455678999999999999654 5544  467999 99999999999998883   46899999999


Q ss_pred             CCCEEEEEe--CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccC
Q 014007          314 NAQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ  391 (432)
Q Consensus       314 ~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  391 (432)
                      +++.|++++  .|+.|+|||+.+++.                                   +..+.+|.+.|++++|+||
T Consensus       331 ~~~~lv~~sg~~d~~I~iwd~~~~~~-----------------------------------v~~l~gH~~~V~~l~~spd  375 (420)
T 4gga_A          331 HYKELISGHGFAQNQLVIWKYPTMAK-----------------------------------VAELKGHTSRVLSLTMSPD  375 (420)
T ss_dssp             TTTEEEEEECTTTCCEEEEETTTCCE-----------------------------------EEEECCCSSCEEEEEECTT
T ss_pred             CCCeEEEEEecCCCEEEEEECCCCcE-----------------------------------EEEEcCCCCCEEEEEEcCC
Confidence            999988765  799999999988763                                   5568899999999999999


Q ss_pred             CCEEEEEecCCeEEEEEecC
Q 014007          392 KNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       392 ~~~l~~~~~dg~v~iw~~~~  411 (432)
                      |++|++|+.||+|+||++..
T Consensus       376 g~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          376 GATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             SSCEEEEETTTEEEEECCSC
T ss_pred             CCEEEEEecCCeEEEEECCC
Confidence            99999999999999999854

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.1e-38  Score=294.57  Aligned_cols=285  Identities=12%  Similarity=0.081  Sum_probs=224.2

Q ss_pred             CCCCCCCeEEEEEcC-CCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCe
Q 014007           81 SSSPPPTLLHISFNQ-DHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNK  157 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~-~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~  157 (432)
                      ...|...|+||+|+| ++.+||+|+. +.|+|||+.+.+......+. +|...|.+++|+| ++..|++++.|     ++
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~~l~s~s~D-----~~  188 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSME-----GT  188 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTTEEEEECSS-----SC
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCCEEEEEeCC-----CE
Confidence            446788999999999 5678999984 55999999877655445554 7999999999997 67899999999     99


Q ss_pred             EEEEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          158 VMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      |++||++++.......   +...+.+++|++++.++++   ||.|++||++ ++.+..+..|...|.+++|+|+++.+++
T Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred             EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEE
Confidence            9999997765433333   3456789999999998884   8999999986 4667778889999999999999887644


Q ss_pred             EeecCCCCcEEEEEccCCc----eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc----
Q 014007          232 VCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR----  303 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~----~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~----  303 (432)
                      .  |+.|+.|++||++...    .....+|...|++++|+|+|++|++++.|+. |+|||+.++++...+..+.+.    
T Consensus       268 s--~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~  344 (435)
T 4e54_B          268 T--ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQH  344 (435)
T ss_dssp             E--EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSS
T ss_pred             E--ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEeccccccccc
Confidence            3  3489999999998733    2334689999999999999999999999999 999999999988777653221    


Q ss_pred             CceEEEEECCCCCEEEEEe------------CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007          304 AEIYSLAFSSNAQWLAVSS------------DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW  371 (432)
Q Consensus       304 ~~i~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (432)
                      ..+....|+|++.+++++.            .++.|++||+.+++.+                                 
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~---------------------------------  391 (435)
T 4e54_B          345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM---------------------------------  391 (435)
T ss_dssp             SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE---------------------------------
T ss_pred             ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE---------------------------------
Confidence            1344567778777777664            3457999999887632                                 


Q ss_pred             eeEEE-EecCCCceEE-EEccCCCEEEEEecCCeEEEEEecC
Q 014007          372 SVAQF-RLVEGSPYIV-AFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       372 ~~~~~-~~~~~~v~~~-~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                        ..+ ..|...|.++ +|+|+|++|++|+ |+.|+||++..
T Consensus       392 --~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~  430 (435)
T 4e54_B          392 --CQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE  430 (435)
T ss_dssp             --EEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred             --EEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence              222 2466677777 7999999999876 88999998744

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-37  Score=296.64  Aligned_cols=317  Identities=8%  Similarity=-0.054  Sum_probs=226.2

Q ss_pred             CCCCeEEEEEcCCC---------CEEEEEc--------------------CCcEEEEEcCCCeeEE--EeecccCcceeE
Q 014007           84 PPPTLLHISFNQDH---------GCFAAGT--------------------DHGFRIYNCDPFREIF--RRDFERGGGIGV  132 (432)
Q Consensus        84 ~~~~v~~~~~s~~~---------~~l~~~~--------------------~~~i~iw~~~~~~~~~--~~~~~~~~~~~v  132 (432)
                      +.+.|.+|+|+|++         ++||+|+                    |+.|+||++++.+...  ...+. +|...|
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V  210 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEV  210 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEE-ECCCSE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE-ecCCcE
Confidence            57899999999987         6777754                    3349999997765432  12343 567789


Q ss_pred             EEEeeeCC------eEEEecCCCCCCCCCCeEEEEeCCCCce-----------eEEee-cCCceEEEEEecCccEEE--e
Q 014007          133 VEMLFRCN------ILALVGGGPDPQYPLNKVMIWDDHQSRC-----------IGELS-FRSEVRSVKLRRDRIIVV--L  192 (432)
Q Consensus       133 ~~~~~~~~------~~~~~s~~~d~~~~~~~v~iwd~~~~~~-----------~~~~~-~~~~v~~~~~~~~~~~~~--~  192 (432)
                      ..++|+|+      +..|++++.|     ++|++||+.+++.           ...+. |...|.+++|++++.+++  .
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~D-----gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~  285 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQE-----GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK  285 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETT-----SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEET
T ss_pred             EEEEECCCCCCCCCCceEEEEecC-----CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeC
Confidence            99999986      5789999999     9999999987642           23455 889999999998775444  3


Q ss_pred             CCeEEEEEcCCC-eeeEEEeeccCCcceE--EEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCC--ceeEEEE
Q 014007          193 EQKIFVYNFADL-KLLHQIETIANPKGLC--AVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDS--RIACFAL  266 (432)
Q Consensus       193 d~~i~i~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~--~i~~~~~  266 (432)
                      ||+|++||++++ .+...+..|...|..+  .+++++..+ +++ ++.|+.|+|||+++. ....+.+|..  .|.+++|
T Consensus       286 DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~-laS-~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f  363 (524)
T 2j04_B          286 NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTV-VST-VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY  363 (524)
T ss_dssp             TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCE-EEE-EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred             CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeE-EEE-eccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence            999999999876 3456688899999988  456766333 343 458999999999884 3445566653  5889999


Q ss_pred             cCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCC-
Q 014007          267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS-  345 (432)
Q Consensus       267 sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  345 (432)
                      +|+++.|++++.|++ |++||++++.++..+.+  |...|++++|+|+|++|++|+.||+|++||+... .+....... 
T Consensus       364 sp~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~  439 (524)
T 2j04_B          364 CPQIYSYIYSDGASS-LRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSA  439 (524)
T ss_dssp             ETTTTEEEEECSSSE-EEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC-----
T ss_pred             CCCcCeEEEeCCCCc-EEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCcc
Confidence            999999999999999 99999999999888886  6789999999999999999999999999998654 222211000 


Q ss_pred             -------CCCCCCCCCC-ceeEeecccceee-cceeeEEEEecCCCceEEEEccCCC---EEEEEecCCeEEEEEecCC
Q 014007          346 -------TSDPTLPTSS-LSFIKGVLPKYFS-SEWSVAQFRLVEGSPYIVAFGHQKN---TVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       346 -------~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~v~iw~~~~~  412 (432)
                             ......+... +.+.......... ....+..+.+|.+.|++|+|+|+++   +||+|+.||.|+||+++.+
T Consensus       440 ~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          440 TQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             -CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             ceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence                   0111222222 1111111110000 1224567889999999999999964   9999999999999998654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.2e-36  Score=276.51  Aligned_cols=276  Identities=17%  Similarity=0.217  Sum_probs=231.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      +.+.|.+++|+|||++++++...+ +.+|....... ....+  +|...|.+++|++++..+++++ |     +.|++||
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~h~~~v~~~~~~~~~~~l~~~~-d-----g~i~iw~   78 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHAR-QINTL--NHGEVVCAVTISNPTRHVYTGG-K-----GCVKVWD   78 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEE-EEEEE--CCSSCCCEEEECSSSSEEEEEC-B-----SEEEEEE
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccc-cceec--cCCCceEEEEEecCCcEEEEcC-C-----CeEEEEE
Confidence            456899999999999998887444 65565433222 22333  5899999999999999999998 7     9999999


Q ss_pred             CCCCce---eEEe---ecCCceEEEEEecCccEEEe---CCeEEEEEcCCCe--eeEEEeeccCCcceEEEecCCCcEEE
Q 014007          163 DHQSRC---IGEL---SFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       163 ~~~~~~---~~~~---~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      +.+++.   +..+   .|...|.+++|+|++.++++   |+.|++||+.+++  ....+..+...+..++|+|+++.++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  158 (337)
T 1gxr_A           79 ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS  158 (337)
T ss_dssp             TTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEE
Confidence            987653   2332   37889999999999988773   8999999999876  56667778888999999999876543


Q ss_pred             EeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~  310 (432)
                         ++.|+.|++||+++.. ...+..|...|.+++|+|++++|++++.|+. |++||+++++.+..+.   +...+.+++
T Consensus       159 ---~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~---~~~~v~~~~  231 (337)
T 1gxr_A          159 ---CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQLQQHD---FTSQIFSLG  231 (337)
T ss_dssp             ---EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEE---CSSCEEEEE
T ss_pred             ---EeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc-EEEEECCCCceEeeec---CCCceEEEE
Confidence               3379999999998854 4567789999999999999999999999999 9999999999988887   568899999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (432)
Q Consensus       311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  390 (432)
                      |+|++++|++++.++.|++||+.+.+                                    ...+..|.+.|.+++|+|
T Consensus       232 ~s~~~~~l~~~~~~~~i~~~~~~~~~------------------------------------~~~~~~~~~~v~~~~~~~  275 (337)
T 1gxr_A          232 YCPTGEWLAVGMESSNVEVLHVNKPD------------------------------------KYQLHLHESCVLSLKFAY  275 (337)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTSSC------------------------------------EEEECCCSSCEEEEEECT
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCC------------------------------------eEEEcCCccceeEEEECC
Confidence            99999999999999999999998875                                    234567888999999999


Q ss_pred             CCCEEEEEecCCeEEEEEecC
Q 014007          391 QKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       391 ~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      ++++|++++.||.|++|++..
T Consensus       276 ~~~~l~~~~~dg~i~~~~~~~  296 (337)
T 1gxr_A          276 CGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTT
T ss_pred             CCCEEEEecCCCcEEEEECCC
Confidence            999999999999999999854

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.2e-38  Score=289.85  Aligned_cols=315  Identities=11%  Similarity=0.065  Sum_probs=220.4

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      ...+.+.|++++|+|++++|++|+ ++.|+||++.+........+. +|...|.+++|++++..+++++.|     +.|+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~   80 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQD-----RNAY   80 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETT-----SSEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCC-----CeEE
Confidence            344677999999999999999997 555999999877434446665 789999999999999999999999     9999


Q ss_pred             EEeCCCCc---eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCe---eeEEEee-ccCCcceEEEecCCCc
Q 014007          160 IWDDHQSR---CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLK---LLHQIET-IANPKGLCAVSQGVGS  228 (432)
Q Consensus       160 iwd~~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~  228 (432)
                      +||+.+++   ....+. |...|.+++|+|++.++++   |+.|++||+++++   ....+.. |...+..++|+|+++.
T Consensus        81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  160 (377)
T 3dwl_C           81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL  160 (377)
T ss_dssp             EC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred             EEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence            99999887   455554 8999999999999987773   8999999999876   4677777 8899999999999875


Q ss_pred             EEEEeecCCCCcEEEEEccC-------------------CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007          229 LVLVCPGLQKGQVRVEHYAS-------------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~-------------------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~  289 (432)
                      ++  + ++.|+.|++||+..                   .....+ .|...|.+++|+|++++|++++.|+. |++||+.
T Consensus       161 l~--~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~  235 (377)
T 3dwl_C          161 LA--A-GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPS  235 (377)
T ss_dssp             EE--E-EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEEC
T ss_pred             EE--E-EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECC
Confidence            43  3 34899999999852                   223334 89999999999999999999999999 9999999


Q ss_pred             CCce----EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC-C-CCCCCCCCCCCCC----------CCC
Q 014007          290 DGTL----LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS-G-SARSEPRSTSDPT----------LPT  353 (432)
Q Consensus       290 ~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~-~~~~~~~~~~~~~----------~~~  353 (432)
                      +++.    +..+..  |...|.+++|+|++++|++++.++.+ +|+..... . .............          ...
T Consensus       236 ~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (377)
T 3dwl_C          236 APEQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEE  312 (377)
T ss_dssp             STTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-
T ss_pred             CCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccc
Confidence            9987    667775  66889999999999999999877665 66665322 1 1111100000000          000


Q ss_pred             CCceeEe--ecccceeec---ceeeEEEEecCCCceEEEEccCC-C---EEEEEecCCeEEEEEe
Q 014007          354 SSLSFIK--GVLPKYFSS---EWSVAQFRLVEGSPYIVAFGHQK-N---TVVILGMDGSFYRCQF  409 (432)
Q Consensus       354 ~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~-~---~l~~~~~dg~v~iw~~  409 (432)
                      ..+.+..  ..+......   .........|.+.|+++++.+.. .   .|++|+.||.|++|++
T Consensus       313 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            0000000  000000000   00000112388999999976643 3   6999999999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.5e-35  Score=269.75  Aligned_cols=251  Identities=14%  Similarity=0.201  Sum_probs=213.8

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~  197 (432)
                      ..+. +|...|.++.|++++..+++++.|     ++|++||+.+++.+..+. |...|.+++|+|++.++++   |+.|+
T Consensus        49 ~~l~-gH~~~v~~~~~s~d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~  122 (340)
T 1got_B           49 RTLR-GHLAKIYAMHWGTDSRLLLSASQD-----GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             EEEC-CCSSCEEEEEECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             eeec-CCCCceEEEEECCCCCEEEEEeCC-----CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence            4555 799999999999999999999999     999999999999998888 8999999999999999884   89999


Q ss_pred             EEEcCCC----eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCE
Q 014007          198 VYNFADL----KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQL  272 (432)
Q Consensus       198 i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~  272 (432)
                      +|++.+.    +....+..|...+.++.|++++.   +++ ++.|+.|++||+.++. ...+.+|...|.+++|+|++++
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s-~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  198 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVT-SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL  198 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEE-EECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence            9999875    45667788999999999998864   233 3479999999998854 5567889999999999999999


Q ss_pred             EEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (432)
Q Consensus       273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (432)
                      |++|+.|+. |++||+++++++..+..  |...|.+++|+|++++|++++.||+|++||+++++.+              
T Consensus       199 l~sg~~d~~-v~~wd~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~--------------  261 (340)
T 1got_B          199 FVSGACDAS-AKLWDVREGMCRQTFTG--HESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL--------------  261 (340)
T ss_dssp             EEEEETTSC-EEEEETTTCSEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------------
T ss_pred             EEEEeCCCc-EEEEECCCCeeEEEEcC--CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE--------------
Confidence            999999999 99999999999988875  6689999999999999999999999999999876521              


Q ss_pred             CCCceeEeecccceeecceeeEEEEe--cCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007          353 TSSLSFIKGVLPKYFSSEWSVAQFRL--VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY  422 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~  422 (432)
                                           ..+..  +...|.+++|+|+|++|++|+.||.|++|++..  ++.+..+..
T Consensus       262 ---------------------~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~--~~~~~~~~~  310 (340)
T 1got_B          262 ---------------------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--ADRAGVLAG  310 (340)
T ss_dssp             ---------------------EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEEC
T ss_pred             ---------------------EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc--CcEeeEeec
Confidence                                 11111  223689999999999999999999999999743  344444443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-36  Score=284.70  Aligned_cols=277  Identities=11%  Similarity=0.071  Sum_probs=227.0

Q ss_pred             CCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      ..+++++|+|+|++|++++ ++.|++|++.+.+..  ..+. .+ ..+....+++++..+++++.|     +.|++||+.
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  127 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS--KMLK-RA-DYTAVDTAKLQMRRFILGTTE-----GDIKVLDSN  127 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT--TTSC-SC-CEEEEEEECSSSCEEEEEETT-----SCEEEECTT
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEeccccee--eEEe-cC-CceEEEEEecCCCEEEEEECC-----CCEEEEeCC
Confidence            3456789999999999998 556999998765543  3333 23 334445688999999999998     999999999


Q ss_pred             CCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCc
Q 014007          165 QSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (432)
Q Consensus       165 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (432)
                      +++.+..+. |...|.+++|+|++.++++   |+.|++||+.+++.+..+..|...+..++|+|+++.++.   ++.|+.
T Consensus       128 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s---~~~d~~  204 (420)
T 3vl1_A          128 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS---ASLDGT  204 (420)
T ss_dssp             SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEE---EETTSC
T ss_pred             CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEE---EcCCCc
Confidence            999888876 9999999999999988884   899999999999999999999999999999999885542   348999


Q ss_pred             EEEEEccCCce-eeeec---cC---------------------CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEE
Q 014007          241 VRVEHYASKRT-KFIMA---HD---------------------SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (432)
Q Consensus       241 i~i~d~~~~~~-~~~~~---~~---------------------~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~  295 (432)
                      |++||++++.. ..+..   |.                     ..+.+++|+|++++|++++.||. |++||+++++.+.
T Consensus       205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~  283 (420)
T 3vl1_A          205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTI  283 (420)
T ss_dssp             EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTTCCEEE
T ss_pred             EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCCCceeE
Confidence            99999987543 33432   33                     44555566899999999999999 9999999999888


Q ss_pred             EEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeE
Q 014007          296 EVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA  374 (432)
Q Consensus       296 ~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (432)
                      .+... |...|.+++|+|+++ +|++++.||.|++||+++++..                                  +.
T Consensus       284 ~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~----------------------------------~~  328 (420)
T 3vl1_A          284 QLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP----------------------------------VG  328 (420)
T ss_dssp             EECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC----------------------------------SE
T ss_pred             Ecccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc----------------------------------hh
Confidence            87653 678999999999999 9999999999999999987531                                  23


Q ss_pred             EEEe-cCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          375 QFRL-VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       375 ~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .+.. |...|.++.| +++++|++++.||.|++|++..
T Consensus       329 ~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          329 EFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             EEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred             hhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence            4555 5567777754 6889999999999999999865

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-35  Score=277.22  Aligned_cols=275  Identities=12%  Similarity=0.087  Sum_probs=229.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~  166 (432)
                      .+.++.|++ +.+++++.++.|++|++.+++.......  .|...|.+++|++++..+++++.|     |.|++||+.++
T Consensus        95 ~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~  166 (401)
T 4aez_A           95 YLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAET--DESTYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQ  166 (401)
T ss_dssp             TCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEEC--CTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTC
T ss_pred             eEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeec--CCCCCEEEEEECCCCCEEEEECCC-----CeEEEEECcCC
Confidence            355677776 3456666677799999998876643333  478899999999999999999988     99999999999


Q ss_pred             ceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcC-CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007          167 RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       167 ~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (432)
                      +.+..+. |...|.+++|+++  +++   .|+.|++||++ ....+..+..|...+..++|+|+++.++.   |+.|+.|
T Consensus       167 ~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s---~~~d~~v  241 (401)
T 4aez_A          167 TKLRTMAGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS---GGNDNVV  241 (401)
T ss_dssp             CEEEEECCCSSCEEEEEEETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE---EETTSCE
T ss_pred             eEEEEecCCCCceEEEEECCC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE---EeCCCeE
Confidence            9999987 9999999999554  444   28999999998 46677888889999999999998875443   3489999


Q ss_pred             EEEEccCCc-eeeeeccCCceeEEEEcCCCC-EEEEEc--CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCE
Q 014007          242 RVEHYASKR-TKFIMAHDSRIACFALTQDGQ-LLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW  317 (432)
Q Consensus       242 ~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~-~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  317 (432)
                      ++||++... ...+..|...|.+++|+|++. ++++++  .|+. |++||+.+++++..+.   +...|.+++|+|++++
T Consensus       242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~  317 (401)
T 4aez_A          242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVD---AGSQVTSLIWSPHSKE  317 (401)
T ss_dssp             EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEECSSSSE
T ss_pred             EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCCCCEEEEEe---CCCcEEEEEECCCCCe
Confidence            999999854 456778999999999999764 556654  7999 9999999999999987   4578999999999999


Q ss_pred             EEEE--eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEE
Q 014007          318 LAVS--SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTV  395 (432)
Q Consensus       318 l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  395 (432)
                      |+++  +.||.|++||+.+++..                                 ....+.+|.+.|.+++|+|++++|
T Consensus       318 l~~~~g~~dg~i~v~~~~~~~~~---------------------------------~~~~~~~h~~~v~~~~~s~dg~~l  364 (401)
T 4aez_A          318 IMSTHGFPDNNLSIWSYSSSGLT---------------------------------KQVDIPAHDTRVLYSALSPDGRIL  364 (401)
T ss_dssp             EEEEECTTTCEEEEEEEETTEEE---------------------------------EEEEEECCSSCCCEEEECTTSSEE
T ss_pred             EEEEeecCCCcEEEEecCCccce---------------------------------eEEEecCCCCCEEEEEECCCCCEE
Confidence            9995  48999999999886521                                 133467899999999999999999


Q ss_pred             EEEecCCeEEEEEecC
Q 014007          396 VILGMDGSFYRCQFDP  411 (432)
Q Consensus       396 ~~~~~dg~v~iw~~~~  411 (432)
                      ++++.||.|++|++..
T Consensus       365 ~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          365 STAASDENLKFWRVYD  380 (401)
T ss_dssp             EEECTTSEEEEEECCC
T ss_pred             EEEeCCCcEEEEECCC
Confidence            9999999999999854

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=287.05  Aligned_cols=316  Identities=13%  Similarity=0.161  Sum_probs=232.3

Q ss_pred             ccCCCCCCCeEEEEEcC-CCCEEEEEcC-CcEEEEEcCC---CeeE-EEeecccCcceeEEEEeeeCCeEEEecCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQ-DHGCFAAGTD-HGFRIYNCDP---FREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~-~~i~iw~~~~---~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  152 (432)
                      ....+|.+.|++++|+| ++++|++|+. +.|+|||+.+   .... ....+  +|...|.+++|++++..+++++.|  
T Consensus        57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~d--  132 (437)
T 3gre_A           57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPNFDAFAVSSKD--  132 (437)
T ss_dssp             EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTTSSEEEEEETT--
T ss_pred             eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCCCCEEEEEeCC--
Confidence            34488999999999999 9999999985 4599999865   3211 11223  488999999999999999999999  


Q ss_pred             CCCCeEEEEeCC---CCceeEEee-------------cCCceEEEE--EecCccEEEe---CCeEEEEEcCCCeeeEEEe
Q 014007          153 YPLNKVMIWDDH---QSRCIGELS-------------FRSEVRSVK--LRRDRIIVVL---EQKIFVYNFADLKLLHQIE  211 (432)
Q Consensus       153 ~~~~~v~iwd~~---~~~~~~~~~-------------~~~~v~~~~--~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~  211 (432)
                         +.|++||+.   +++.+..+.             +...+.++.  +++++.++++   |+.|++||+++++.+..+.
T Consensus       133 ---g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          133 ---GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             ---SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ---CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence               999999985   554444332             344566666  4567877773   8999999999999999998


Q ss_pred             e--ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeee-ccCCceeEEEEc----CCCCEEEEEcCCCceE
Q 014007          212 T--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM-AHDSRIACFALT----QDGQLLATSSTKGTLV  283 (432)
Q Consensus       212 ~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~-~~~~~i~~~~~s----p~~~~l~~~~~dg~~i  283 (432)
                      .  |...+.+++|+|+++.++.   |+.||.|++||++.+.. ..+. .|...|.+++|+    |++.+|++|+.|+. |
T Consensus       210 ~~~h~~~v~~~~~s~~~~~l~s---~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i  285 (437)
T 3gre_A          210 NSPRHGAVSSICIDEECCVLIL---GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-L  285 (437)
T ss_dssp             CCGGGCCEEEEEECTTSCEEEE---EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-E
T ss_pred             cCCCCCceEEEEECCCCCEEEE---EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-E
Confidence            7  7889999999999875442   34899999999998654 4443 788899999665    56889999999999 9


Q ss_pred             EEEECCCCceEEEEEeCC------------------------CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          284 RIFNTLDGTLLQEVRRGA------------------------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~------------------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      ++||+++++++..+..+.                        |...|++++|+ ++++|++++.||.|++||+.+++...
T Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence            999999999999888542                        55668999999 78999999999999999999988665


Q ss_pred             CCCCCCCCCCC----CCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccC--CCEEEEEecCCeEEEEE
Q 014007          340 RSEPRSTSDPT----LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ--KNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       340 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~iw~  408 (432)
                      ....+......    .......+.......  .....+.....|.+.|++++|+++  +.+|++|+.||.|+||+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          365 AVISPSRFSDVFIPTQVTANLTMLLRKMKR--TSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEECC--CCCEEEEEEEETTEEEEEEECC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEecccccCceEEEEEeecceEEEEEeccc--ccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            54433211100    000000000000000  000112234559999999999998  78999999999999994

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.1e-35  Score=264.21  Aligned_cols=272  Identities=13%  Similarity=0.139  Sum_probs=228.2

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        88 v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      .++|+||+++ +||+|.|+.|+|||+++++......+. +|...|.+++|++++..+++|+.|     +.|++||+.+++
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~-~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~  100 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQME-QPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQK  100 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECC-STTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEec-CCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCce
Confidence            5779999986 899999999999999998877545554 688899999999999999999999     999999999999


Q ss_pred             eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC-eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007          168 CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (432)
Q Consensus       168 ~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (432)
                      .+..+. |...+.++.+.+  .++++   ++.+++|+.... ..+..+..|...+..+.+.++++.++  + ++.|+.|+
T Consensus       101 ~~~~~~~h~~~~~~~~~~~--~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--s-~~~d~~i~  175 (318)
T 4ggc_A          101 RLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA--S-GGNDNLVN  175 (318)
T ss_dssp             EEEEEECCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE--E-EETTSCEE
T ss_pred             eEEEecCccceEEEeecCC--CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEE--E-EecCccee
Confidence            999988 888887766554  45552   889999998765 45667788889999999999988553  2 34899999


Q ss_pred             EEEccCCc-----eeeeeccCCceeEEEEcCCCCEE---EEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC
Q 014007          243 VEHYASKR-----TKFIMAHDSRIACFALTQDGQLL---ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (432)
Q Consensus       243 i~d~~~~~-----~~~~~~~~~~i~~~~~sp~~~~l---~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  314 (432)
                      +||++++.     ......|...|.+++++|++..+   ++++.++. |++||...........   +...+..+.|+++
T Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~  251 (318)
T 4ggc_A          176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVD---AHSQVCSILWSPH  251 (318)
T ss_dssp             EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEEETT
T ss_pred             EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE-EEEEeccccccccccc---ceeeeeeeeeccc
Confidence            99998743     33456788899999999976533   46778899 9999999998887776   5578999999999


Q ss_pred             CCEEEEEe--CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007          315 AQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (432)
Q Consensus       315 ~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  392 (432)
                      +..+++++  .|+.|+|||+++++.                                   +..+++|.+.|++++|+|||
T Consensus       252 ~~~~~~~sg~~d~~i~iwd~~~~~~-----------------------------------~~~l~gH~~~V~~l~~spdg  296 (318)
T 4ggc_A          252 YKELISGHGFAQNQLVIWKYPTMAK-----------------------------------VAELKGHTSRVLSLTMSPDG  296 (318)
T ss_dssp             TTEEEEEECTTTCCEEEEETTTCCE-----------------------------------EEEECCCSSCEEEEEECTTS
T ss_pred             ccceEEEEEcCCCEEEEEECCCCcE-----------------------------------EEEEcCCCCCEEEEEEcCCC
Confidence            99887765  799999999998763                                   45688999999999999999


Q ss_pred             CEEEEEecCCeEEEEEec
Q 014007          393 NTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       393 ~~l~~~~~dg~v~iw~~~  410 (432)
                      ++|++|+.||+|+||++.
T Consensus       297 ~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          297 ATVASAAADETLRLWRCF  314 (318)
T ss_dssp             SCEEEEETTTEEEEECCS
T ss_pred             CEEEEEecCCeEEEEECC
Confidence            999999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-37  Score=288.02  Aligned_cols=283  Identities=12%  Similarity=0.161  Sum_probs=232.3

Q ss_pred             CCCCeEEEEEcCCCC-EEEEE----------c-CCcEEEEEcCCCeeE-EEeecccCcceeEEEEeeeCCeEEEecCCCC
Q 014007           84 PPPTLLHISFNQDHG-CFAAG----------T-DHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~-~l~~~----------~-~~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  150 (432)
                      +...|.+++|+|+++ +|++|          + |+.|+||++.+.+.. ....+  .|...|.+++|++++..+++++.|
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d   88 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGALDN   88 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEESS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEccC
Confidence            345788999999997 89998          5 445999999876532 11333  478899999999999999999988


Q ss_pred             CCCCCCeEEEEeCCC----CceeEEee-cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCe------eeEE---Eee
Q 014007          151 PQYPLNKVMIWDDHQ----SRCIGELS-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLK------LLHQ---IET  212 (432)
Q Consensus       151 ~~~~~~~v~iwd~~~----~~~~~~~~-~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~------~~~~---~~~  212 (432)
                           +.|++||+.+    .+.+..+. |...|.+++|+|+ +.++++   |+.|++||+.+++      ....   +..
T Consensus        89 -----g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  163 (416)
T 2pm9_A           89 -----GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS  163 (416)
T ss_dssp             -----SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred             -----CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence                 9999999987    34677776 9999999999998 777763   8999999999876      3322   356


Q ss_pred             ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeecc------CCceeEEEEcCCC-CEEEEEcCCC---c
Q 014007          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAH------DSRIACFALTQDG-QLLATSSTKG---T  281 (432)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~------~~~i~~~~~sp~~-~~l~~~~~dg---~  281 (432)
                      |...+..++|+|++..++++  ++.|+.|++||++.... ..+..|      ...|.+++|+|++ .+|++++.|+   .
T Consensus       164 ~~~~v~~~~~~~~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~  241 (416)
T 2pm9_A          164 SVDEVISLAWNQSLAHVFAS--AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS  241 (416)
T ss_dssp             SSCCCCEEEECSSCTTEEEE--ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred             CCCCeeEEEeCCCCCcEEEE--EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence            78889999999996555433  35899999999988543 444444      7889999999997 6899999998   9


Q ss_pred             eEEEEECCCC-ceEEEEEeCCCcCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeE
Q 014007          282 LVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI  359 (432)
Q Consensus       282 ~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (432)
                       |++||++++ +.+..+.. .|...|.+++|+| ++++|++++.||.|++||+++++.                      
T Consensus       242 -i~~~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~----------------------  297 (416)
T 2pm9_A          242 -ILIWDLRNANTPLQTLNQ-GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ----------------------  297 (416)
T ss_dssp             -CCEEETTSTTSCSBCCCS-CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE----------------------
T ss_pred             -EEEEeCCCCCCCcEEeec-CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc----------------------
Confidence             999999986 55555541 2668999999999 999999999999999999988762                      


Q ss_pred             eecccceeecceeeEEEEecCCCceEEEEccCC-CEEEEEecCCeEEEEEecCC
Q 014007          360 KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK-NTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~  412 (432)
                                   +..+..|.+.|.+++|+|++ ++|++++.||.|++|++...
T Consensus       298 -------------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          298 -------------LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             -------------EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             -------------ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence                         45677899999999999999 89999999999999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.8e-35  Score=277.42  Aligned_cols=285  Identities=10%  Similarity=0.068  Sum_probs=229.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      ..+....|++++++|++|+. +.|++|++.+.+..  ..+. +|...|.+++|++++..+++++.|     +.|++||+.
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~  169 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR--EIDQ-AHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVK  169 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE--EETT-SSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETT
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee--eecc-cccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCC
Confidence            44555678999999999985 45999999877654  4554 799999999999999999999999     999999999


Q ss_pred             CCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc------------------------CC
Q 014007          165 QSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA------------------------NP  216 (432)
Q Consensus       165 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~------------------------~~  216 (432)
                      +++.+..+. |...|.+++|+|++.++++   |+.|++||+++++.+..+..+.                        ..
T Consensus       170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  249 (420)
T 3vl1_A          170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK  249 (420)
T ss_dssp             TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred             CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence            999999888 9999999999999998884   8999999999999888886532                        33


Q ss_pred             cceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eee-eccCCceeEEEEcCCCC-EEEEEcCCCceEEEEECCCCce
Q 014007          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI-MAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTL  293 (432)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~-~~~~~~i~~~~~sp~~~-~l~~~~~dg~~i~vwd~~~~~~  293 (432)
                      +..++|+|+++.+  ++ |+.||.|++||+++... ..+ ..|...|.+++|+|++. +|++|+.||. |++||+++++.
T Consensus       250 v~~~~~s~~~~~l--~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~  325 (420)
T 3vl1_A          250 KNNLEFGTYGKYV--IA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPEC  325 (420)
T ss_dssp             CCTTCSSCTTEEE--EE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTS
T ss_pred             ccceEEcCCCCEE--EE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcC
Confidence            4445566777644  33 44899999999988543 333 45889999999999998 9999999999 99999998754


Q ss_pred             -EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee
Q 014007          294 -LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS  372 (432)
Q Consensus       294 -~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (432)
                       +..+..+ +...|.++.| +++++|++++.||.|++||+..........                          ....
T Consensus       326 ~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--------------------------~~~~  377 (420)
T 3vl1_A          326 PVGEFLIN-EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAI--------------------------EFET  377 (420)
T ss_dssp             CSEEEEES-TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEE--------------------------CTTS
T ss_pred             chhhhhcc-CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccce--------------------------eccC
Confidence             6777764 5678888866 578899999999999999998854322110                          0000


Q ss_pred             eEEEEecCCCceEEEEccCCC---EEEEEecCCeEEEEEec
Q 014007          373 VAQFRLVEGSPYIVAFGHQKN---TVVILGMDGSFYRCQFD  410 (432)
Q Consensus       373 ~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~v~iw~~~  410 (432)
                      ...+..|.+.|..++|+|+++   .|++++.+|.+.+|+++
T Consensus       378 ~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          378 PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             CEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             ccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence            123556888999999999999   78888899999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.4e-36  Score=278.17  Aligned_cols=245  Identities=15%  Similarity=0.202  Sum_probs=199.5

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc-cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      ...|...|++++|+|++++|+++.++.|+|||+.+++......+. .+|...|.+++|++++..+++++.|     +.|+
T Consensus        90 ~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~  164 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVK  164 (357)
T ss_dssp             EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEE
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEE
Confidence            345888999999999998888777888999999876654322221 2688999999999999999999999     9999


Q ss_pred             EEeCCCCceeEEee-cCCceEEEEEecCcc-EEE---eCCeEEEEEcCCCeeeEEEe--eccCCcceEEEecCCCcEEEE
Q 014007          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       160 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      +||+.+++.+..+. |...|.+++|++++. +++   .|+.|++||+++++....+.  .+...+..++|+|++..++ +
T Consensus       165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l-a  243 (357)
T 4g56_B          165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF-A  243 (357)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEE-E
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceE-E
Confidence            99999999999998 999999999999864 344   28999999999988766554  3455678899999877654 3


Q ss_pred             eecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007          233 CPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~  310 (432)
                      + |+.|+.|++||+++ .....+.+|...|++++|+|++ ++|++|+.|++ |+|||+++++++..+.   |...|++++
T Consensus       244 ~-g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~~---H~~~V~~va  318 (357)
T 4g56_B          244 C-GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDLS---HRDFVTGVA  318 (357)
T ss_dssp             E-EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEECC---CSSCEEEEE
T ss_pred             E-eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEECC---CCCCEEEEE
Confidence            3 45899999999988 4566788999999999999987 57999999999 9999999998876653   789999999


Q ss_pred             ECC-CCCEEEEEeCCCeEEEEEecCCC
Q 014007          311 FSS-NAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       311 ~s~-~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      |+| ++++|++++.||+|++||+.+..
T Consensus       319 fsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          319 WSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             EeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            998 89999999999999999997654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=281.31  Aligned_cols=311  Identities=10%  Similarity=0.141  Sum_probs=221.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee---------EEEeecccCcc------------eeEEEEeeeCC
Q 014007           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE---------IFRRDFERGGG------------IGVVEMLFRCN  140 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~---------~~~~~~~~~~~------------~~v~~~~~~~~  140 (432)
                      .+.+.|++++|+|+|++||+|+.++ |+||++.+.+.         .....+. +|.            ..|.++.|+++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCC
Confidence            4678999999999999999998555 99999986552         1234554 576            78999999999


Q ss_pred             e--EEEecCCCCCCCCCCeEEEEeCCCCcee---------------------------------------EEe-e-cCCc
Q 014007          141 I--LALVGGGPDPQYPLNKVMIWDDHQSRCI---------------------------------------GEL-S-FRSE  177 (432)
Q Consensus       141 ~--~~~~s~~~d~~~~~~~v~iwd~~~~~~~---------------------------------------~~~-~-~~~~  177 (432)
                      +  ..+++++.|     +.|++||+.+++..                                       ..+ . |...
T Consensus       105 ~~~~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          105 KNAAQFLLSTND-----KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             CSSSEEEEEECS-----SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             CCcceEEEeCCC-----CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence            7  778888888     99999998765432                                       122 2 8899


Q ss_pred             eEEEEEecCccEEEe--CCeEEEEEcCC-CeeeEE-------EeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007          178 VRSVKLRRDRIIVVL--EQKIFVYNFAD-LKLLHQ-------IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (432)
Q Consensus       178 v~~~~~~~~~~~~~~--d~~i~i~d~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  247 (432)
                      |.+++|+|++.++++  |+.|++||+++ ++.+..       +..|...+.+++|+|++..++ ++ |+.||.|++||++
T Consensus       180 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s-~~~dg~i~iwd~~  257 (447)
T 3dw8_B          180 INSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF-VY-SSSKGTIRLCDMR  257 (447)
T ss_dssp             CCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE-EE-EETTSCEEEEETT
T ss_pred             eEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEE-EE-EeCCCeEEEEECc
Confidence            999999999998884  89999999984 444442       446778899999999984433 32 3489999999999


Q ss_pred             CCc-----eeeeeccCC------------ceeEEEEcCCCCEEEEEcCCCceEEEEECCC-CceEEEEEeCCCcC-----
Q 014007          248 SKR-----TKFIMAHDS------------RIACFALTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRA-----  304 (432)
Q Consensus       248 ~~~-----~~~~~~~~~------------~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~-~~~~~~~~~~~~~~-----  304 (432)
                      ...     ...+..|..            .|.+++|+|+|++|++++. +. |++||+++ ++++..+..+....     
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~~l~~  335 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQVHEYLRSKLCS  335 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeeccccccccccc
Confidence            865     466777776            8999999999999999999 98 99999997 88888888542100     


Q ss_pred             --------ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC-CCCCCCceeEeecccceeecceeeEE
Q 014007          305 --------EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP-TLPTSSLSFIKGVLPKYFSSEWSVAQ  375 (432)
Q Consensus       305 --------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (432)
                              .+..++|+|++++|++++.||.|++||+.+++.+.-. .+..... ............. .+ ....... .
T Consensus       336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~  411 (447)
T 3dw8_B          336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLE-ASRENNKPRTVLKPRKVCASG-KR-KKDEISV-D  411 (447)
T ss_dssp             HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEE-CCSTTCCTTCBCCCCCEECSS-CC-CTTCEEG-G
T ss_pred             cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeee-ecccccccccccCCccccccC-Cc-ccccccc-c
Confidence                    1345999999999999999999999999987743211 1100000 0000000000000 00 0000000 0


Q ss_pred             EEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          376 FRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       376 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      ...+...|..++|+|++++||+++.++ +++|.
T Consensus       412 ~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          412 SLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             GCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             ccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence            001345789999999999999998876 77775

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.5e-35  Score=273.99  Aligned_cols=292  Identities=10%  Similarity=0.080  Sum_probs=235.2

Q ss_pred             cccCCCCCCCeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEeecc----------cCcceeEEEEeeeC-CeEEE
Q 014007           78 ESTSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFE----------RGGGIGVVEMLFRC-NILAL  144 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~-~~~~~  144 (432)
                      ......|.+.|++++|+| ++++|++|+ |+.|++|++.+.+........          .+|...|.++.|++ ++..+
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            355677999999999999 999999998 445999999876543222110          24889999999999 77788


Q ss_pred             ecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc---cEEEe---CCeEEEEEcCCCeeeEEEeeccCCcc
Q 014007          145 VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR---IIVVL---EQKIFVYNFADLKLLHQIETIANPKG  218 (432)
Q Consensus       145 ~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~  218 (432)
                      ++++.|     +.|++||+.+++.+..+.+...+.++.+++.+   .++++   |+.|++||+++++.+..+..|...+.
T Consensus       116 ~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~  190 (408)
T 4a11_B          116 TSSSFD-----KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL  190 (408)
T ss_dssp             EEEETT-----SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred             EEEeCC-----CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence            888888     99999999999999999999999999999854   36663   89999999999999999999999999


Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccCCc--eeee---------------eccCCceeEEEEcCCCCEEEEEcCCCc
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFI---------------MAHDSRIACFALTQDGQLLATSSTKGT  281 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~---------------~~~~~~i~~~~~sp~~~~l~~~~~dg~  281 (432)
                      +++|+|+++.++++  ++.||.|++||++...  ...+               ..|...|.+++|+|++++|++++.|+.
T Consensus       191 ~~~~~~~~~~ll~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  268 (408)
T 4a11_B          191 AVSWSPRYDYILAT--ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR  268 (408)
T ss_dssp             EEEECSSCTTEEEE--EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEECCCCCcEEEE--EcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence            99999999875433  3489999999998742  2222               578899999999999999999999999


Q ss_pred             eEEEEECCCCceEEEEEeCCC---cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007          282 LVRIFNTLDGTLLQEVRRGAD---RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF  358 (432)
Q Consensus       282 ~i~vwd~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (432)
                       |++||+.+++....+.....   ...+........+..+++++.++.|++||+.+++.                     
T Consensus       269 -i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---------------------  326 (408)
T 4a11_B          269 -MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ---------------------  326 (408)
T ss_dssp             -EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE---------------------
T ss_pred             -EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc---------------------
Confidence             99999999877654432211   11222222233455666777899999999988763                     


Q ss_pred             EeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                                    +..+.+|.+.|.+++|+|++++|++++.||.|++|+++..
T Consensus       327 --------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          327 --------------ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             --------------EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             --------------eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence                          4467789999999999999999999999999999999653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3e-35  Score=262.54  Aligned_cols=245  Identities=11%  Similarity=0.136  Sum_probs=201.1

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC--ceeEEee-cCCceEEEEEecC--ccEEEe---CCeEEE
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--RCIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFV  198 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i  198 (432)
                      +|...|.+++|++++..|++++.|     ++|++||+..+  +.+.++. |.+.|.+++|+++  +.++++   |++|++
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             CCcCceEEEEECCCCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            789999999999999999999999     99999998753  6677887 9999999999863  777773   999999


Q ss_pred             EEcCCCe--eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc---eeeeeccCCceeEEEEcCC----
Q 014007          199 YNFADLK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQD----  269 (432)
Q Consensus       199 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~i~~~~~sp~----  269 (432)
                      ||+++++  .+..+..|...+.+++|+|+....++++ ++.|+.|++||++...   ...+.+|...|.+++|+|+    
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s-~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEE-EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            9998874  5566777889999999999832223343 3489999999998742   4567799999999999997    


Q ss_pred             ---------CCEEEEEcCCCceEEEEECCCCc----eEEEEEeCCCcCceEEEEECCCC---CEEEEEeCCCeEEEEEec
Q 014007          270 ---------GQLLATSSTKGTLVRIFNTLDGT----LLQEVRRGADRAEIYSLAFSSNA---QWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       270 ---------~~~l~~~~~dg~~i~vwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~  333 (432)
                               +++|++|+.|+. |++||+++++    +...+.+  |...|.+++|+|++   ++|++++.|++|+|||++
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ---------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             cccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                     579999999999 9999998876    4455553  77899999999985   899999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE--EecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          334 VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF--RLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +.....                                ....+  ..|.+.|.+++|+|++++|++++.||.|+||+.+.
T Consensus       238 ~~~~~~--------------------------------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          238 NEQGPW--------------------------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             STTSCC--------------------------------EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CCCCcc--------------------------------ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            753110                                00011  24567899999999999999999999999999865


Q ss_pred             C
Q 014007          412 V  412 (432)
Q Consensus       412 ~  412 (432)
                      .
T Consensus       286 ~  286 (297)
T 2pm7_B          286 E  286 (297)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=264.73  Aligned_cols=260  Identities=16%  Similarity=0.145  Sum_probs=208.6

Q ss_pred             EeecccCcce-eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE--Ee-e-cCCceEEEEEecCccEEEe---
Q 014007          121 RRDFERGGGI-GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG--EL-S-FRSEVRSVKLRRDRIIVVL---  192 (432)
Q Consensus       121 ~~~~~~~~~~-~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~--~~-~-~~~~v~~~~~~~~~~~~~~---  192 (432)
                      ...+. +|.. .+..++|+|++..|++++.|     +.|++||+.++....  .+ . |...|.+++|+|++.++++   
T Consensus         8 ~~~~~-~h~~~~v~~l~~sp~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~   81 (345)
T 3fm0_A            8 LGRVP-AHPDSRCWFLAWNPAGTLLASCGGD-----RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF   81 (345)
T ss_dssp             EEEEC-CSTTSCEEEEEECTTSSCEEEEETT-----SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred             eeeec-CCCCCcEEEEEECCCCCEEEEEcCC-----CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence            35565 5655 89999999999999999999     999999998876432  22 3 8899999999999998884   


Q ss_pred             CCeEEEEEcCCC--eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeeccCCceeEEEE
Q 014007          193 EQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFAL  266 (432)
Q Consensus       193 d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~~i~~~~~  266 (432)
                      |+.|++||+..+  +.+..+..|...|..++|+|+++.+  ++ ++.|+.|++||++...    ...+.+|...|.+++|
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l--~s-~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL--AT-CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEE--EE-EETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEE--EE-EECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence            899999998876  4577888999999999999998754  33 3489999999998742    3456789999999999


Q ss_pred             cCCCCEEEEEcCCCceEEEEECCCCceE--EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCC
Q 014007          267 TQDGQLLATSSTKGTLVRIFNTLDGTLL--QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (432)
Q Consensus       267 sp~~~~l~~~~~dg~~i~vwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  344 (432)
                      +|++++|++++.|+. |++||.++++..  ..+.  .|...|.+++|+|+|++|++++.|++|+|||.............
T Consensus       159 ~p~~~~l~s~s~d~~-i~~w~~~~~~~~~~~~~~--~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~  235 (345)
T 3fm0_A          159 HPSQELLASASYDDT-VKLYREEEDDWVCCATLE--GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS  235 (345)
T ss_dssp             CSSSSCEEEEETTSC-EEEEEEETTEEEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred             CCCCCEEEEEeCCCc-EEEEEecCCCEEEEEEec--CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence            999999999999999 999999887644  4444  47789999999999999999999999999998654422111000


Q ss_pred             CCCCCCCCCCCceeEeecccceeecceeeEEEEe-cCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          345 STSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                            ..              .....++..+.+ |...|.+++|+|++..|++++.|+.|++|+++..
T Consensus       236 ------~~--------------~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          236 ------GS--------------DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             -----------------------CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             ------cc--------------CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence                  00              000111333444 7788999999999999999999999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.6e-34  Score=260.51  Aligned_cols=243  Identities=11%  Similarity=0.193  Sum_probs=210.5

Q ss_pred             EEeecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCC-----CceeEEee-cCCceEEEEEecCccEEEe
Q 014007          120 FRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQ-----SRCIGELS-FRSEVRSVKLRRDRIIVVL  192 (432)
Q Consensus       120 ~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~~  192 (432)
                      +...+. +|...|.+++|++++ ..+++++.|     ++|++|++..     +.++..+. |...|.+++|++++.++++
T Consensus         9 l~~~l~-gH~~~V~~l~~~~~~~~~l~s~s~D-----~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s   82 (319)
T 3frx_A            9 LRGTLE-GHNGWVTSLATSAGQPNLLLSASRD-----KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALS   82 (319)
T ss_dssp             EEEEEC-CCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEc-cccceEEEEEccCCCccEEEEecCC-----ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEE
Confidence            345665 899999999999865 789999999     9999999864     23466677 9999999999999998884


Q ss_pred             ---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCC
Q 014007          193 ---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQD  269 (432)
Q Consensus       193 ---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~  269 (432)
                         |++|++||+.+++.+..+..|...+..++|++++..+  ++ |+.|+.|++||++...+..+.+|...|.++.|+|.
T Consensus        83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l--~s-~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A           83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI--IS-GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEE--EE-EETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC
T ss_pred             EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEE--EE-EeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccC
Confidence               9999999999999999999999999999999998754  33 45899999999998888889999999999999985


Q ss_pred             ------CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCC
Q 014007          270 ------GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEP  343 (432)
Q Consensus       270 ------~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  343 (432)
                            +.+|++++.|+. |++||+++++....+.+  |...|.+++|+|+|++|++++.||.|++||+.+++.      
T Consensus       160 ~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~--h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~------  230 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIG--HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA------  230 (319)
T ss_dssp             ------CCEEEEEETTSC-EEEEETTTTEEEEEECC--CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE------
T ss_pred             CCCCCCccEEEEEeCCCE-EEEEECCcchhheeecC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE------
Confidence                  458999999999 99999999998888875  678999999999999999999999999999988762      


Q ss_pred             CCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          344 RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                                   +..+.. .+.|.+++|+|++.+|++++.+ .+++|+++.
T Consensus       231 -----------------------------~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~  267 (319)
T 3frx_A          231 -----------------------------MYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDP  267 (319)
T ss_dssp             -----------------------------EEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred             -----------------------------EEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence                                         223333 3579999999999999988765 599999865

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.1e-35  Score=269.57  Aligned_cols=285  Identities=13%  Similarity=0.134  Sum_probs=228.9

Q ss_pred             CCcccCCCCCCCeEEEEEcCC---CCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCC
Q 014007           76 PAESTSSSPPPTLLHISFNQD---HGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (432)
Q Consensus        76 ~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  151 (432)
                      ........|.+.|++++|+|+   |++|++|+.+ .|+||++.+........+. +|...|.++.|++++..+++++.| 
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d-  107 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCD-  107 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETT-
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCC-
Confidence            345678899999999999999   5899999854 5999999874444334454 689999999999999999999999 


Q ss_pred             CCCCCeEEEEeCCCCceeEEeecCCceEEEEE--ecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCC
Q 014007          152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKL--RRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (432)
Q Consensus       152 ~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (432)
                          +.|++||+.+++.+....|...|.+++|  ++++.++++   |+.|++||+++++.+..+..+. .  ..++.+.+
T Consensus       108 ----g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~--~~~~~~~~  180 (368)
T 3mmy_A          108 ----KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-R--CYCADVIY  180 (368)
T ss_dssp             ----SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-C--EEEEEEET
T ss_pred             ----CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-C--ceEEEecC
Confidence                9999999999998887779999999999  888887773   8999999999999888887654 3  34444444


Q ss_pred             CcEEEEeecCCCCcEEEEEccCCceee---eeccCCceeEEEEcCCCCE----EEEEcCCCceEEEEECCCC---ceEEE
Q 014007          227 GSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQL----LATSSTKGTLVRIFNTLDG---TLLQE  296 (432)
Q Consensus       227 ~~~~~~~~g~~d~~i~i~d~~~~~~~~---~~~~~~~i~~~~~sp~~~~----l~~~~~dg~~i~vwd~~~~---~~~~~  296 (432)
                      ..++++   ..++.+.+|+++......   ...+...+.++.+.++...    +++++.|+. |++||++..   +.+..
T Consensus       181 ~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~  256 (368)
T 3mmy_A          181 PMAVVA---TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFT  256 (368)
T ss_dssp             TEEEEE---EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEE
T ss_pred             CeeEEE---eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEEEecCCCCcccccee
Confidence            544433   368999999998743322   1234456667777665554    999999999 999999887   55667


Q ss_pred             EEeCCCcC------------ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007          297 VRRGADRA------------EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (432)
Q Consensus       297 ~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (432)
                      +..  |..            .|.+++|+|++++|++++.||.|++||+.+++.                           
T Consensus       257 ~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~---------------------------  307 (368)
T 3mmy_A          257 FKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK---------------------------  307 (368)
T ss_dssp             EEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE---------------------------
T ss_pred             eee--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE---------------------------
Confidence            764  333            699999999999999999999999999998763                           


Q ss_pred             ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                              +..+..|.+.|++++|+|++++|++++.|+..+.|++-
T Consensus       308 --------~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          308 --------LKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             --------EEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             --------EEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence                    34566788899999999999999999999877665543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.2e-35  Score=261.04  Aligned_cols=247  Identities=16%  Similarity=0.162  Sum_probs=199.8

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC--eEEEecCCCCCCCCCC
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLN  156 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~~  156 (432)
                      +..+|.+.|++++|+|+|++|++|+ |+.|+||+++.........+. +|...|.+++|+++  +..+++++.|     +
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D-----~   77 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYD-----G   77 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETT-----T
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCC-----C
Confidence            4678999999999999999999998 555999999754333335665 79999999999763  7899999999     9


Q ss_pred             eEEEEeCCCCc--eeEEee-cCCceEEEEEecC--ccEEEe---CCeEEEEEcCCCe--eeEEEeeccCCcceEEEecCC
Q 014007          157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGV  226 (432)
Q Consensus       157 ~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~  226 (432)
                      +|++||+.+++  .+..+. |...|.+++|+|+  +.++++   |+.|++||++++.  ....+..|...+..++|+|++
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred             EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence            99999998874  455565 8899999999997  666663   8999999998753  245667888899999999974


Q ss_pred             C-----------cEEEEeecCCCCcEEEEEccCCc-----eeeeeccCCceeEEEEcCCC---CEEEEEcCCCceEEEEE
Q 014007          227 G-----------SLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDG---QLLATSSTKGTLVRIFN  287 (432)
Q Consensus       227 ~-----------~~~~~~~g~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~~~~sp~~---~~l~~~~~dg~~i~vwd  287 (432)
                      .           ..++++ |+.|+.|++||++...     ...+.+|...|.+++|+|++   .+|++++.|++ |++||
T Consensus       158 ~~~~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd  235 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWT  235 (297)
T ss_dssp             ------------CCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEE
T ss_pred             ccccccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEE
Confidence            1           123444 4589999999998743     34678999999999999984   89999999999 99999


Q ss_pred             CCCCc--e-EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          288 TLDGT--L-LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       288 ~~~~~--~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      +++..  . ...+....|...|.+++|+|+|++|++++.||.|+||+...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            98753  1 22222134668899999999999999999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.6e-35  Score=295.20  Aligned_cols=285  Identities=13%  Similarity=0.171  Sum_probs=242.6

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .....+|.+.|++++|+|+|++|++|+.++ |+|||+.+++..  ..+. +|...|.++.|++++..+++++.|     |
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-----g   77 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV--RSIQ-VTETPVRAGKFIARKNWIIVGSDD-----F   77 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEEGGGTEEEEEETT-----S
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE--EEEe-cCCCcEEEEEEeCCCCEEEEEeCC-----C
Confidence            355678999999999999999999998555 999999887765  4554 688999999999999999999998     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC-eeeEEEeeccCCcceEEEec-CCCcEE
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQ-GVGSLV  230 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~  230 (432)
                      .|++||+.+++.+..+. |...|.+++|+|++.++++   |+.|++||+.++ .....+..|...+.+++|+| +++.++
T Consensus        78 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  157 (814)
T 3mkq_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (814)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             eEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence            99999999999999998 9999999999999988773   899999999886 67778888999999999999 554333


Q ss_pred             EEeecCCCCcEEEEEccCCc-eeeeec-cCCceeEEEEcC--CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCce
Q 014007          231 LVCPGLQKGQVRVEHYASKR-TKFIMA-HDSRIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~-~~~~~~-~~~~i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i  306 (432)
                        + ++.||.|++||+.... ...+.. +...+.+++|+|  ++.+|++++.|+. |++||+.+++.+..+..  |...|
T Consensus       158 --~-~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~--~~~~v  231 (814)
T 3mkq_A          158 --S-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNV  231 (814)
T ss_dssp             --E-EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEEEC--CSSCE
T ss_pred             --E-EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEcC--CCCCE
Confidence              2 3479999999998743 334444 448999999999  9999999999999 99999999999998885  56889


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE
Q 014007          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV  386 (432)
Q Consensus       307 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  386 (432)
                      .+++|+|++++|++++.||.|++||+.+++.                                   ...+..|.+.+.++
T Consensus       232 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-----------------------------------~~~~~~~~~~v~~~  276 (814)
T 3mkq_A          232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-----------------------------------EKTLNVGLERSWCI  276 (814)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEETTTCSE-----------------------------------EEEECCSSSSEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------------------EEEeecCCCcEEEE
Confidence            9999999999999999999999999988762                                   33566777889999


Q ss_pred             EEccCCCE-EEEEecCCeEEEEEecC
Q 014007          387 AFGHQKNT-VVILGMDGSFYRCQFDP  411 (432)
Q Consensus       387 ~~s~~~~~-l~~~~~dg~v~iw~~~~  411 (432)
                      +|+|+++. +++++.|+.+.+|++..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          277 ATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             EECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             EEccCCCceEEEEEeCCCEEEEEcCC
Confidence            99999874 35555577788888643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.6e-34  Score=258.46  Aligned_cols=252  Identities=18%  Similarity=0.270  Sum_probs=213.6

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~  197 (432)
                      ..+. +|...|.+++|++++..+++++.|     +.|++|++.+++....+. |...|.+++|+|++.++++   |+.|+
T Consensus        17 ~~~~-gh~~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           17 FTLA-GHTKAVSSVKFSPNGEWLASSSAD-----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEc-ccCCcEEEEEECCCCCEEEEeeCC-----CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            4554 799999999999999999999999     999999999999888888 9999999999999998884   89999


Q ss_pred             EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEE
Q 014007          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATS  276 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~  276 (432)
                      +||+++++.+..+..|...+.+++|+|+++.++  + |+.|+.|++||++++ ....+..|...|.+++|+|++++|+++
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--s-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV--S-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  167 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEE--E-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE--E-EeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            999999999999999999999999999987543  3 348999999999875 456778899999999999999999999


Q ss_pred             cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007          277 STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL  356 (432)
Q Consensus       277 ~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (432)
                      +.|+. |++||+++++.+..+... +...+..++|+|++++|++++.||.|++||+++++.                   
T Consensus       168 ~~d~~-i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------------------  226 (312)
T 4ery_A          168 SYDGL-CRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-------------------  226 (312)
T ss_dssp             ETTSC-EEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-------------------
T ss_pred             eCCCc-EEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-------------------
Confidence            99999 999999999988877643 557899999999999999999999999999988763                   


Q ss_pred             eeEeecccceeecceeeEEEEecCCCce--EEEE-ccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          357 SFIKGVLPKYFSSEWSVAQFRLVEGSPY--IVAF-GHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                                      +..+.+|...+.  ...| .+++++|++|+.||.|++|++..  ++.+..++
T Consensus       227 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~  276 (312)
T 4ery_A          227 ----------------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT--KEIVQKLQ  276 (312)
T ss_dssp             ----------------EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT--CCEEEEEC
T ss_pred             ----------------EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC--chhhhhhh
Confidence                            223444543322  2234 46788999999999999999744  44444444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.7e-35  Score=267.41  Aligned_cols=278  Identities=14%  Similarity=0.069  Sum_probs=228.5

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee-EEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCC
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLN  156 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~  156 (432)
                      +...|.+.|++++|+|++++|++++ ++.|+||++...+. .....+. +|...|.+++|++++. .+++++.|     +
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d-----g   79 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQ-----G   79 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETT-----S
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCC-----C
Confidence            4568999999999999999999988 55599999987661 1112222 5888999999999999 99999988     9


Q ss_pred             eEEEEeC-CCCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCC---------CeeeEEEeeccCCcceEE
Q 014007          157 KVMIWDD-HQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD---------LKLLHQIETIANPKGLCA  221 (432)
Q Consensus       157 ~v~iwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~  221 (432)
                      .|++||+ .+++......  |...|.+++|+| +.++++   |+.|++||+++         ++++..+. +...+..++
T Consensus        80 ~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  157 (342)
T 1yfq_A           80 EILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD  157 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred             eEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence            9999999 8887655555  889999999999 776663   89999999987         66666665 777888899


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccC-Cce---eeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCC-----
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS-KRT---KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDG-----  291 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~---~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~-----  291 (432)
                      |++++  +  ++ ++.++.|++||++. ...   .....|...|.+++|+| ++++|++++.||. |++||+...     
T Consensus       158 ~~~~~--l--~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          158 TNSSR--L--IV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYN  231 (342)
T ss_dssp             ECSSE--E--EE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTT
T ss_pred             ecCCc--E--EE-EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCcccc
Confidence            98876  3  32 34799999999987 332   24457888999999999 9999999999999 999999887     


Q ss_pred             -ceEEEEEeCC-------CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007          292 -TLLQEVRRGA-------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (432)
Q Consensus       292 -~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                       +....+..+.       |...|.+++|+|++++|++++.||.|++||+.+++.                          
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--------------------------  285 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK--------------------------  285 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE--------------------------
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH--------------------------
Confidence             7788887642       134899999999999999999999999999988763                          


Q ss_pred             cceeecceeeEEEEec-CCCceEEEEccCCCEEEEEecCCe-EEEEE
Q 014007          364 PKYFSSEWSVAQFRLV-EGSPYIVAFGHQKNTVVILGMDGS-FYRCQ  408 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~-v~iw~  408 (432)
                               +..+..| .+.|.+++  |++++|++++.||. .+.|.
T Consensus       286 ---------~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          286 ---------IKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             ---------EEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             ---------hhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence                     3345667 88899999  99999999999998 55544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.4e-34  Score=269.63  Aligned_cols=276  Identities=17%  Similarity=0.233  Sum_probs=225.9

Q ss_pred             cccCCCCCCCe-EEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           78 ESTSSSPPPTL-LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        78 ~~~~~~~~~~v-~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      .....+|...| .++.+  ++.+|++|+ |+.|++||+.+++..  ..+. +|...|.++.|++++ .+++++.|     
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~--~~~~-~h~~~V~~l~~~~~~-~l~s~s~d-----  182 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL--LQLS-GHDGGVWALKYAHGG-ILVSGSTD-----  182 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEECSTT-EEEEEETT-----
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEE--EEEe-CCCcCEEEEEEcCCC-EEEEEeCC-----
Confidence            34567788775 66666  567899888 555999999888765  5565 799999999999988 78888888     


Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEec--CccEEEe---CCeEEEEEcCCCee-----------------------
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKL-----------------------  206 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~~~~---d~~i~i~d~~~~~~-----------------------  206 (432)
                      +.|++||+.+++.+..+. |...|.+++|++  ++.++++   |+.|++||+++++.                       
T Consensus       183 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (464)
T 3v7d_B          183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  262 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred             CCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence            999999999999999998 999999999994  6677663   89999999987653                       


Q ss_pred             eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (432)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v  285 (432)
                      +..+..|...+  .+++++++.++.   |+.|+.|++||+++. .+..+.+|...|.+++|+|++++|++|+.|+. |++
T Consensus       263 ~~~~~~~~~~v--~~~~~~~~~l~~---~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~v  336 (464)
T 3v7d_B          263 VGVLRGHMASV--RTVSGHGNIVVS---GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRI  336 (464)
T ss_dssp             EEEECCCSSCE--EEEEEETTEEEE---EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEE
T ss_pred             EEEccCccceE--EEEcCCCCEEEE---EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEE
Confidence            33344454444  455777775443   348999999999885 45667889999999999999999999999999 999


Q ss_pred             EECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK  365 (432)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (432)
                      ||+++++++..+..  |...|.+++|+  +++|++++.||.|++||+.+....                           
T Consensus       337 wd~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~---------------------------  385 (464)
T 3v7d_B          337 WDLENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK---------------------------  385 (464)
T ss_dssp             EETTTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE---------------------------
T ss_pred             EECCCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee---------------------------
Confidence            99999999999875  66899999997  589999999999999999886521                           


Q ss_pred             eeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                               ....+...+..++|++++++|++|+ ||.|++|++..
T Consensus       386 ---------~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          386 ---------FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             ---------EEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred             ---------eeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence                     1123556788899999999999998 99999999854

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.7e-34  Score=260.65  Aligned_cols=250  Identities=15%  Similarity=0.206  Sum_probs=211.5

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~  197 (432)
                      ..+. +|...|.+++|++++..+++++.|     ++|++||..+++....+. +...|.+++|+|++.++++   |+.++
T Consensus        58 ~~l~-gH~~~V~~~~~s~d~~~l~s~s~D-----g~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~  131 (354)
T 2pbi_B           58 RTLK-GHGNKVLCMDWCKDKRRIVSSSQD-----GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS  131 (354)
T ss_dssp             EEEE-CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred             EEec-CCCCeEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence            4454 799999999999999999999999     999999999998888887 8889999999999999984   89999


Q ss_pred             EEEcCCC------eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcC--
Q 014007          198 VYNFADL------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQ--  268 (432)
Q Consensus       198 i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp--  268 (432)
                      +|++...      .....+..|...+..++|++++..++.   ++.|+.|++||++++. +..+.+|...|.+++|+|  
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t---~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~  208 (354)
T 2pbi_B          132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT---ASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE  208 (354)
T ss_dssp             EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEE---EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred             EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEE---EeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence            9998643      345667789999999999999876543   3479999999998854 567889999999999988  


Q ss_pred             CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCC
Q 014007          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSD  348 (432)
Q Consensus       269 ~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  348 (432)
                      +|++|++|+.|+. |++||+++++++..+..  |...|.+++|+|++.+|++++.|++|++||++..+.+          
T Consensus       209 ~g~~l~sgs~Dg~-v~~wd~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~----------  275 (354)
T 2pbi_B          209 TGNTFVSGGCDKK-AMVWDMRSGQCVQAFET--HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV----------  275 (354)
T ss_dssp             SCCEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE----------
T ss_pred             CCCEEEEEeCCCe-EEEEECCCCcEEEEecC--CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE----------
Confidence            5789999999999 99999999999988875  6689999999999999999999999999999876521          


Q ss_pred             CCCCCCCceeEeecccceeecceeeEEEEec--CCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEe
Q 014007          349 PTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV--EGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQL  420 (432)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~  420 (432)
                                               ..+..+  ...+.+++|+|++++|++|+.||.|++|++.  +++.+..+
T Consensus       276 -------------------------~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~--~~~~~~~l  322 (354)
T 2pbi_B          276 -------------------------AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL--KGSRVSIL  322 (354)
T ss_dssp             -------------------------EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT--TCSEEEEE
T ss_pred             -------------------------EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC--CCceEEEE
Confidence                                     111111  2357899999999999999999999999974  34444443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.9e-35  Score=266.27  Aligned_cols=246  Identities=14%  Similarity=0.177  Sum_probs=199.5

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc--eeEEee-cCCceEEEEEec--CccEEEe---CCeEEE
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-FRSEVRSVKLRR--DRIIVVL---EQKIFV  198 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~--~~~~~~~---d~~i~i  198 (432)
                      +|...|.+++|++++..|++++.|     ++|++||+.+++  .+..+. |...|.+++|++  ++.++++   |++|++
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            799999999999999999999999     999999998774  456676 999999999986  3666663   999999


Q ss_pred             EEcCCC--eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeeccCCceeEEEEcCC---
Q 014007          199 YNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQD---  269 (432)
Q Consensus       199 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~~i~~~~~sp~---  269 (432)
                      ||++++  +....+..|...+..++|+|++...++++ |+.|+.|++||++...    ...+.+|...|.+++|+|+   
T Consensus        86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            999886  35667778999999999999853334454 4589999999998752    2345689999999999997   


Q ss_pred             --------------CCEEEEEcCCCceEEEEECCCC---ceEEEEEeCCCcCceEEEEECCCC----CEEEEEeCCCeEE
Q 014007          270 --------------GQLLATSSTKGTLVRIFNTLDG---TLLQEVRRGADRAEIYSLAFSSNA----QWLAVSSDKGTVH  328 (432)
Q Consensus       270 --------------~~~l~~~~~dg~~i~vwd~~~~---~~~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~  328 (432)
                                    +++|++|+.|+. |++||++..   +++..+..  |...|.+++|+|++    ++|++++.||+|+
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~~las~s~D~~v~  241 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTSTIASCSQDGRVF  241 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred             ccccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeeccc--CCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence                          478999999999 999999765   34555553  77899999999987    8999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          329 VFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      |||+.+.....                               +....+..|.+.|++++|+|++++|++++.||.|++|+
T Consensus       242 iw~~~~~~~~~-------------------------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          242 IWTCDDASSNT-------------------------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             EEECSSTTCCC-------------------------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             EEEccCccccc-------------------------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            99998742100                               00113456788999999999999999999999999999


Q ss_pred             ecCC
Q 014007          409 FDPV  412 (432)
Q Consensus       409 ~~~~  412 (432)
                      .+..
T Consensus       291 ~~~~  294 (316)
T 3bg1_A          291 ESVD  294 (316)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            8653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.5e-35  Score=263.75  Aligned_cols=246  Identities=17%  Similarity=0.160  Sum_probs=195.3

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPL  155 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~  155 (432)
                      ....+|.+.|++++|+|+|++|++|+ |+.|+|||+.+++......+. +|...|.+++|++  ++..|++++.|     
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D-----   80 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYD-----   80 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETT-----
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECC-----
Confidence            45678999999999999999999998 555999999877655456676 7999999999975  47889999999     


Q ss_pred             CeEEEEeCCCCc--eeEEee-cCCceEEEEEecC--ccEEEe---CCeEEEEEcCCCee---eEEEeeccCCcceEEEec
Q 014007          156 NKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKL---LHQIETIANPKGLCAVSQ  224 (432)
Q Consensus       156 ~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~  224 (432)
                      ++|++||+.+++  .+..+. |...|.+++|+|+  +.++++   |+.|++||++.+..   ...+..|...+..++|+|
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred             CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence            999999998874  455565 8999999999997  667763   89999999987532   344556778888999998


Q ss_pred             CCC---------------cEEEEeecCCCCcEEEEEccCC----ceeeeeccCCceeEEEEcCCC----CEEEEEcCCCc
Q 014007          225 GVG---------------SLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQDG----QLLATSSTKGT  281 (432)
Q Consensus       225 ~~~---------------~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~~~i~~~~~sp~~----~~l~~~~~dg~  281 (432)
                      +..               ..++++ |+.|+.|++||++..    ....+.+|...|.+++|+|++    ++|++++.|++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~s-gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFAS-GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEEC-CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred             ccCCccccccccccCccccceEEE-ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence            731               123454 568999999999753    345678999999999999986    88999999999


Q ss_pred             eEEEEECCCC---c-eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          282 LVRIFNTLDG---T-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       282 ~i~vwd~~~~---~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                       |++||+.+.   + ....+..  |...|.+++|+|++++|++++.||+|+||+...
T Consensus       240 -v~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          240 -VFIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             -EEEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             -EEEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence             999998763   1 1223333  568999999999999999999999999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.8e-34  Score=304.46  Aligned_cols=284  Identities=15%  Similarity=0.216  Sum_probs=246.7

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .....+|.+.|++++|+|+|++|++|+. +.|+||++.+++..  ..+. +|...|.+++|++++..+++++.|     +
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~--~~~~-~h~~~v~~~~~s~~~~~l~s~~~d-----~  679 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL--LDIK-AHEDEVLCCAFSSDDSYIATCSAD-----K  679 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE--EEec-cCCCCEEEEEEecCCCEEEEEeCC-----C
Confidence            3456789999999999999999999985 45999999888766  4555 799999999999999999999999     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecC--ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      .|++||+.+++.+..+. |...|.+++|+++  +.++++   |+.|++||+.+++.+..+..|...+..++|+|+++.++
T Consensus       680 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  759 (1249)
T 3sfz_A          680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA  759 (1249)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEE
Confidence            99999999999999998 9999999999994  445553   89999999999999999999999999999999998544


Q ss_pred             EEeecCCCCcEEEEEccCCceee-ee-------------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007          231 LVCPGLQKGQVRVEHYASKRTKF-IM-------------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~~~~-~~-------------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~  296 (432)
                      .   ++.||.|++||+.+..... +.             .+...+.+++|+|+|+++++++ ++. |.+||+.++..+..
T Consensus       760 s---~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~-v~~~d~~~~~~~~~  834 (1249)
T 3sfz_A          760 S---CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNK-VLLFDIHTSGLLAE  834 (1249)
T ss_dssp             E---EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTE-EEEEETTTCCEEEE
T ss_pred             E---EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCc-EEEEEecCCCceeE
Confidence            3   3489999999998754322 21             1234788999999999999887 567 99999999999988


Q ss_pred             EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE
Q 014007          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF  376 (432)
Q Consensus       297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (432)
                      +... |...|.+++|+|+++++++++.||.|++||+.++..                                   +..+
T Consensus       835 ~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~-----------------------------------~~~~  878 (1249)
T 3sfz_A          835 IHTG-HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-----------------------------------VADC  878 (1249)
T ss_dssp             EECS-SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE-----------------------------------EEEE
T ss_pred             EcCC-CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-----------------------------------eeec
Confidence            8754 778999999999999999999999999999988652                                   4457


Q ss_pred             EecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          377 RLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       377 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                      .+|.+.|.+++|+|++++|++++.||.|++|++.
T Consensus       879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             CCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            7899999999999999999999999999999975

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.7e-34  Score=264.63  Aligned_cols=239  Identities=18%  Similarity=0.241  Sum_probs=206.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      +...|++++|+|+|++|++|+ |+.|+|||+.+.+..  ..+. +|...|.++.|++++..+++++.|     +.|++||
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~--~~~~-~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd  193 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--MILQ-GHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWD  193 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEE
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEc-cCCCCEEEEEEcCCCCEEEEecCC-----CcEEEEE
Confidence            344699999999999999998 555999999887665  4555 789999999999999999999999     9999999


Q ss_pred             CCCCceeEEeecCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEE-------eeccCCcceEEEecCCCcEEE
Q 014007          163 DHQSRCIGELSFRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQI-------ETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      +.++++...+.+...+.+++|+| ++.++++   |+.|++||+++++.+..+       ..|...+..++|+|+++.++ 
T Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~-  272 (393)
T 1erj_A          194 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-  272 (393)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE-
T ss_pred             CCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE-
Confidence            99999988888888999999999 8888874   899999999998877766       46778899999999997553 


Q ss_pred             EeecCCCCcEEEEEccCC-------------ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007          232 VCPGLQKGQVRVEHYASK-------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~-------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~  298 (432)
                       + |+.|+.|++||++..             ....+.+|...|.+++|+|++.+|++|+.|+. |++||+++++++..+.
T Consensus       273 -s-~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~~~~~~l~  349 (393)
T 1erj_A          273 -S-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQ  349 (393)
T ss_dssp             -E-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEE
T ss_pred             -E-EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCCeEEEEEC
Confidence             3 448999999999752             23456789999999999999999999999999 9999999999999888


Q ss_pred             eCCCcCceEEEEECC------CCCEEEEEeCCCeEEEEEecCCC
Q 014007          299 RGADRAEIYSLAFSS------NAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       299 ~~~~~~~i~~~~~s~------~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +  |...|.+++|++      ++.+|++|+.||+|+||++...+
T Consensus       350 ~--h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~  391 (393)
T 1erj_A          350 G--HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA  391 (393)
T ss_dssp             C--CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred             C--CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence            5  668999999886      68899999999999999997643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.4e-34  Score=281.86  Aligned_cols=285  Identities=11%  Similarity=0.184  Sum_probs=229.0

Q ss_pred             ccCCCCCC---CeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCeeEEEeeccc---CcceeEEEEeeeCCeEEEecCCCC
Q 014007           79 STSSSPPP---TLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRCNILALVGGGPD  150 (432)
Q Consensus        79 ~~~~~~~~---~v~~~~~s~~-~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~s~~~d  150 (432)
                      .....|..   .|++++|+|+ +++|++++ ++.|++||+.+++..  ..+..   .|...+.++.|+ ++..+++++.|
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d  273 (615)
T 1pgu_A          197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL--KYIEDDQEPVQGGIFALSWL-DSQKFATVGAD  273 (615)
T ss_dssp             EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE--EECCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred             eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe--EEecccccccCCceEEEEEc-CCCEEEEEcCC
Confidence            44566888   9999999999 99999888 555999999887766  44422   588899999999 99999999988


Q ss_pred             CCCCCCeEEEEeCCCCceeEEeecC-----CceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEE
Q 014007          151 PQYPLNKVMIWDDHQSRCIGELSFR-----SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAV  222 (432)
Q Consensus       151 ~~~~~~~v~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  222 (432)
                           +.|++||+.+++.+..+...     ..+.++.|. ++.+++   .|+.|++||+.+++.+..+..|...+..++|
T Consensus       274 -----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~  347 (615)
T 1pgu_A          274 -----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV  347 (615)
T ss_dssp             -----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred             -----CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence                 99999999999988888733     677888886 555555   2889999999888777777666555544443


Q ss_pred             ecC---------------------------------CCcE----------------------------------------
Q 014007          223 SQG---------------------------------VGSL----------------------------------------  229 (432)
Q Consensus       223 ~~~---------------------------------~~~~----------------------------------------  229 (432)
                       |+                                 ++.+                                        
T Consensus       348 -~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  426 (615)
T 1pgu_A          348 -NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND  426 (615)
T ss_dssp             -TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred             -cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCC
Confidence             22                                 1111                                        


Q ss_pred             -------------------------------EEEeecCC-CCcEEEEEccCCce--eeeeccCCceeEEEEcCCCCEEEE
Q 014007          230 -------------------------------VLVCPGLQ-KGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLAT  275 (432)
Q Consensus       230 -------------------------------~~~~~g~~-d~~i~i~d~~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~  275 (432)
                                                     ++++ ++. |+.|++||+.....  ..+..|...|.+++|+|++++|++
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  505 (615)
T 1pgu_A          427 DDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV-GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA  505 (615)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE-EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE
T ss_pred             CceEEEeccCCceeeecccCCCceEEEEcCCEEEE-eecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEE
Confidence                                           1121 224 77788888777555  556789999999999999999999


Q ss_pred             EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC----------CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCC
Q 014007          276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS----------NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS  345 (432)
Q Consensus       276 ~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  345 (432)
                      ++.|+. |++||+.+++++..+... |...|++++|+|          ++++|++++.||.|++||+.++...       
T Consensus       506 ~~~dg~-i~iw~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------  576 (615)
T 1pgu_A          506 GDVMGK-ILLYDLQSREVKTSRWAF-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI-------  576 (615)
T ss_dssp             EETTSC-EEEEETTTTEEEECCSCC-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC-------
T ss_pred             cCCCCe-EEEeeCCCCcceeEeecC-CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCcee-------
Confidence            999999 999999999998877642 668999999999          9999999999999999999887311       


Q ss_pred             CCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                                 +..+.+|.+.|++++|+|+++ |++++.||.|++|+++.
T Consensus       577 ---------------------------~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          577 ---------------------------IKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ---------------------------EEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             ---------------------------chhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence                                       334567889999999999999 99999999999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6.7e-34  Score=267.94  Aligned_cols=281  Identities=14%  Similarity=0.261  Sum_probs=226.1

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      ....|...|+++.|  ++++|++|+ |+.|++||+.+++..  ..+. +|...|.++.|  ++..+++++.|     |.|
T Consensus       128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~--~~~~-~h~~~v~~l~~--~~~~l~sg~~d-----g~i  195 (435)
T 1p22_A          128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--RILT-GHTGSVLCLQY--DERVIITGSSD-----STV  195 (435)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--EEEC-CCSSCEEEEEC--CSSEEEEEETT-----SCE
T ss_pred             cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEE--EEEc-CCCCcEEEEEE--CCCEEEEEcCC-----CeE
Confidence            34567788999887  788999988 555999999887765  4555 78899999999  56688888888     999


Q ss_pred             EEEeCCCCceeEEee-cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeee---EEEeeccCCcceEEEecCCCcEEEEe
Q 014007          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLL---HQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      ++||+.+++.+..+. |...|.+++|+++....+ .|+.|++||+.+++..   ..+..|...+..+++  +++.+  ++
T Consensus       196 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l--~s  271 (435)
T 1p22_A          196 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI--VS  271 (435)
T ss_dssp             EEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEE--EE
T ss_pred             EEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEE--EE
Confidence            999999999999988 899999999985522222 3899999999887655   566677888877777  55543  33


Q ss_pred             ecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007          234 PGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s  312 (432)
                       |+.||.|++||+++. .+..+.+|...|.++.|  ++++|++|+.||. |++||+++++++..+..  |...|.+++| 
T Consensus       272 -~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~~~-  344 (435)
T 1p22_A          272 -ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF-  344 (435)
T ss_dssp             -EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEC-
T ss_pred             -EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEeC--CcCcEEEEEe-
Confidence             347999999999885 45667889999999999  5789999999999 99999999999999885  6689999999 


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  392 (432)
                       ++.+|++|+.||.|++||+.+++.....                          .....+..+..|.+.|.+++|  ++
T Consensus       345 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~--------------------------~~~~~~~~~~~h~~~v~~l~~--~~  395 (435)
T 1p22_A          345 -DNKRIVSGAYDGKIKVWDLVAALDPRAP--------------------------AGTLCLRTLVEHSGRVFRLQF--DE  395 (435)
T ss_dssp             -CSSEEEEEETTSCEEEEEHHHHTSTTSC--------------------------TTTTEEEEECCCSSCCCCEEE--CS
T ss_pred             -cCCEEEEEeCCCcEEEEECCCCCCcccc--------------------------ccchheeeccCCCCCeEEEEe--CC
Confidence             7899999999999999999876522110                          011125567889999999999  78


Q ss_pred             CEEEEEecCCeEEEEEecCC
Q 014007          393 NTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       393 ~~l~~~~~dg~v~iw~~~~~  412 (432)
                      ++|++|+.||.|++|++...
T Consensus       396 ~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          396 FQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             SCEEECCSSSEEEEEC----
T ss_pred             CEEEEEeCCCEEEEEECCCC
Confidence            99999999999999998664

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.5e-34  Score=280.98  Aligned_cols=280  Identities=14%  Similarity=0.217  Sum_probs=236.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCC----eeEEEeecccCccee-EEEEeeeC--CeEEEecCCCCCCCC
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPF----REIFRRDFERGGGIG-VVEMLFRC--NILALVGGGPDPQYP  154 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~----~~~~~~~~~~~~~~~-v~~~~~~~--~~~~~~s~~~d~~~~  154 (432)
                      ..|.+.|++++|+|+|++|++++++.|+||+++++    +..  ..+. +|... |.+++|+|  ++..+++++.|    
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~--~~~~-~h~~~~v~~~~~sp~~~~~~l~s~~~d----   87 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV--VQFT-GHGSSVVTTVKFSPIKGSQYLCSGDES----   87 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSE--EEEC-TTTTSCEEEEEECSSTTCCEEEEEETT----
T ss_pred             CCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccc--eEEe-cCCCceEEEEEECcCCCCCEEEEecCC----
Confidence            46789999999999999999999878999999876    444  4554 68888 99999999  99999999999    


Q ss_pred             CCeEEEEeCCCC--------ceeEEee-cCCceEEEEEecCccEEEe---C----CeEEEEEcCCCeeeEEEeeccCCcc
Q 014007          155 LNKVMIWDDHQS--------RCIGELS-FRSEVRSVKLRRDRIIVVL---E----QKIFVYNFADLKLLHQIETIANPKG  218 (432)
Q Consensus       155 ~~~v~iwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~~~~---d----~~i~i~d~~~~~~~~~~~~~~~~~~  218 (432)
                       +.|++||+.++        +.+..+. |...|.+++|+|++.++++   +    +.|++||  .++.+..+..|...+.
T Consensus        88 -g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~  164 (615)
T 1pgu_A           88 -GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN  164 (615)
T ss_dssp             -SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred             -CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence             99999999755        5666676 8999999999999998884   3    4777777  6678888889999999


Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCC---ceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCce
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDS---RIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTL  293 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~---~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~  293 (432)
                      .++|+|+++..+++  ++.|+.|++||+.... ...+..|..   .|.+++|+|+ +++|++++.|+. |++||+++++.
T Consensus       165 ~~~~~~~~~~~l~~--~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~  241 (615)
T 1pgu_A          165 ACHLKQSRPMRSMT--VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEF  241 (615)
T ss_dssp             EEEECSSSSCEEEE--EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCE
T ss_pred             EEEECCCCCcEEEE--EeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCE
Confidence            99999999854433  3489999999998844 456778988   9999999999 999999999999 99999999999


Q ss_pred             EEEEEeC--CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007          294 LQEVRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW  371 (432)
Q Consensus       294 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (432)
                      +..+...  .|...|.+++|+ ++++|++++.||.|++||+++++.                                  
T Consensus       242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~----------------------------------  286 (615)
T 1pgu_A          242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC----------------------------------  286 (615)
T ss_dssp             EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE----------------------------------
T ss_pred             eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE----------------------------------
Confidence            9888320  267899999999 999999999999999999998763                                  


Q ss_pred             eeEEEEec----CCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          372 SVAQFRLV----EGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       372 ~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                       +..+..+    ...+.++.|+ ++++|++++.||.|++|++..
T Consensus       287 -~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          287 -VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             -EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred             -EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence             2234444    3567788885 899999999999999999754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-34  Score=256.81  Aligned_cols=242  Identities=18%  Similarity=0.279  Sum_probs=189.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCC-----eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF-----REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .|...|++++|+|++++|++|+ |+.|+||++...     .......+. +|...|.+++|+|++.+|++++.|     +
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D-----~  129 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRD-----K  129 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETT-----S
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCC-----C
Confidence            4999999999999999999998 556999998532     112234554 789999999999999999999999     9


Q ss_pred             eEEEEeCCCC----ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC--eeeEEEeeccCCcceEEEecCC
Q 014007          157 KVMIWDDHQS----RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGV  226 (432)
Q Consensus       157 ~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~  226 (432)
                      +|++||+...    +++..+. |...|.+++|+|++.++++   |++|++||..++  +++..+.+|...+..++|+|++
T Consensus       130 ~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  209 (330)
T 2hes_X          130 SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE  209 (330)
T ss_dssp             CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSS
T ss_pred             EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCC
Confidence            9999999432    4566676 8999999999999998884   899999998776  6778888999999999999996


Q ss_pred             CcEEEEeecCCCCcEEEEEccCC---------ceeeeec-cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce--E
Q 014007          227 GSLVLVCPGLQKGQVRVEHYASK---------RTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--L  294 (432)
Q Consensus       227 ~~~~~~~~g~~d~~i~i~d~~~~---------~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~--~  294 (432)
                      ....+++ |+.|+.|++||++..         ....+.. |...|.+++|++++ +|++++.|+. |++||..+++.  .
T Consensus       210 ~~~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~~~~~~  286 (330)
T 2hes_X          210 GVFRLCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDGEWKVF  286 (330)
T ss_dssp             SSCEEEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETTEEEEE
T ss_pred             CeeEEEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCCceEEE
Confidence            5445554 458999999998763         1223333 89999999999765 7999999999 99999987742  2


Q ss_pred             EEEEeCCCcC-ceEEEEECC--CCCEEEEEeCCCeEEEEEecC
Q 014007          295 QEVRRGADRA-EIYSLAFSS--NAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       295 ~~~~~~~~~~-~i~~~~~s~--~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      .... ..|.. .|.+++|+|  ++++|++|+.||+|+|||+++
T Consensus       287 ~~~~-~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          287 AKRA-LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEES-CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             eccc-cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            2221 23555 899999999  789999999999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-34  Score=288.17  Aligned_cols=239  Identities=10%  Similarity=0.105  Sum_probs=189.9

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      ...+|...|++++|+|++++||+|+.+ .|+||+....+..  ..+  .|...|.+++|++ +.++++++.|     ++|
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--~~~--~~~~~V~~l~fsp-g~~L~S~s~D-----~~v   81 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--IKL--EDRSAIKEMRFVK-GIYLVVINAK-----DTV   81 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--EEC--SSCCCEEEEEEET-TTEEEEEETT-----CEE
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--EEc--CCCCCEEEEEEcC-CCEEEEEECc-----CeE
Confidence            345789999999999999999999954 5999998776544  334  3778999999999 6689999988     999


Q ss_pred             EEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeee-----------EEEeeccCCcceEEEec
Q 014007          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLL-----------HQIETIANPKGLCAVSQ  224 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~  224 (432)
                      ++||+.+++.+..+.+...|.+++|+|++.++++   ||.|++||+++++..           ..+..|...|.+++|+|
T Consensus        82 ~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           82 YVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             EEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             EEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence            9999999999999988899999999999999884   899999999988753           12345778899999999


Q ss_pred             CCCcEEEEeecCCCCcEEEEEccCCce-eeeecc------------------CCceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007          225 GVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAH------------------DSRIACFALTQDGQLLATSSTKGTLVRI  285 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~------------------~~~i~~~~~sp~~~~l~~~~~dg~~i~v  285 (432)
                      ++...+++  |+.|+.| +||++.+.. ..+..|                  ...|.+++|+|+|++|++++.|+. |++
T Consensus       162 ~~~~~l~~--g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~l  237 (902)
T 2oaj_A          162 RDIGTVLI--SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVF  237 (902)
T ss_dssp             TEEEEEEE--ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEE
T ss_pred             CCCCEEEE--EeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEE
Confidence            75444332  4589999 999998553 334433                  578999999999999999999999 999


Q ss_pred             EECCCCceEEEEEe-----C-----------CCcCceEEEEEC----CCC-CEEEEEeCC-----CeEEEEEe
Q 014007          286 FNTLDGTLLQEVRR-----G-----------ADRAEIYSLAFS----SNA-QWLAVSSDK-----GTVHVFNL  332 (432)
Q Consensus       286 wd~~~~~~~~~~~~-----~-----------~~~~~i~~~~~s----~~~-~~l~~~~~d-----g~i~iwd~  332 (432)
                      ||+++++++.....     +           .+...|.+++|+    |++ .+|++|+.|     +.+++|++
T Consensus       238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            99999988754211     1           123479999995    443 466677554     26777774

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.1e-33  Score=253.44  Aligned_cols=242  Identities=12%  Similarity=0.177  Sum_probs=200.9

Q ss_pred             eecccCcceeEEEEee-----eC-CeEEEecCCCCCCCCCCeEEEEeCCCC-------ceeEEee-cCCceEEEEEecCc
Q 014007          122 RDFERGGGIGVVEMLF-----RC-NILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDR  187 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~-----~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~  187 (432)
                      ..+. +|...|.++.|     ++ ++..+++++.|     ++|++||+.++       .....+. |...|.+++|+|++
T Consensus        15 ~~l~-gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D-----~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R           15 GILE-GHSDWVTSIVAGFSQKENEDSPVLISGSRD-----KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEE-CCSSCEEEEEECCCSSTTCCCCEEEEEETT-----SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred             eeec-cchhhhhheeeEEEeecCCCCCEEEEEcCC-----CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence            4565 79999999998     66 88999999999     99999998753       3455666 89999999999999


Q ss_pred             cEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee---ccCCce
Q 014007          188 IIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM---AHDSRI  261 (432)
Q Consensus       188 ~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~---~~~~~i  261 (432)
                      .++++   |++|++||+++++.+..+..|...+..++|+|+++.++  + ++.|+.|++||+.........   .|...|
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~--s-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v  165 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL--S-AGAEREIKLWNILGECKFSSAEKENHSDWV  165 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEE--E-EETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEE--E-EcCCCEEEEEeccCCceeeeecccCCCcee
Confidence            98874   89999999999999999999999999999999998554  3 348999999999865444433   788999


Q ss_pred             eEEEEcCCC----------CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007          262 ACFALTQDG----------QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       262 ~~~~~sp~~----------~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  331 (432)
                      .+++|+|++          .+|++++.|+. |++|| .+.+....+..  |...|.+++|+|+|++|++|+.||.|++||
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd-~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd  241 (343)
T 2xzm_R          166 SCVRYSPIMKSANKVQPFAPYFASVGWDGR-LKVWN-TNFQIRYTFKA--HESNVNHLSISPNGKYIATGGKDKKLLIWD  241 (343)
T ss_dssp             EEEEECCCCCSCSCCCSSCCEEEEEETTSE-EEEEE-TTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             eeeeeccccccccccCCCCCEEEEEcCCCE-EEEEc-CCCceeEEEcC--ccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence            999999987          78999999999 99999 56667777774  668999999999999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +.+....                                  ...+ .+...|.+++|+|++++|++ +.|+.|++|++..
T Consensus       242 ~~~~~~~----------------------------------~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~  285 (343)
T 2xzm_R          242 ILNLTYP----------------------------------QREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMT  285 (343)
T ss_dssp             SSCCSSC----------------------------------SEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSS
T ss_pred             CCCCccc----------------------------------ceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCC
Confidence            9544311                                  1111 24456999999999988765 5688899999865


Q ss_pred             C
Q 014007          412 V  412 (432)
Q Consensus       412 ~  412 (432)
                      .
T Consensus       286 ~  286 (343)
T 2xzm_R          286 Q  286 (343)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-34  Score=267.65  Aligned_cols=250  Identities=12%  Similarity=0.179  Sum_probs=206.6

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~  197 (432)
                      ..+. +|...|.++.|+|++..+++++.|     ++|++||+.+++.+..+. |...|.+++|+|++.++++   |+.|+
T Consensus        60 ~~l~-gH~~~V~~~~~sp~~~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~  133 (380)
T 3iz6_a           60 RTLQ-GHSGKVYSLDWTPEKNWIVSASQD-----GRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS  133 (380)
T ss_dssp             EEEC-CCSSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred             eccc-ccccEEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence            5665 899999999999999999999999     999999999999999888 9999999999999999984   89999


Q ss_pred             EEEcCCCe-------eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-ee-----eccCCceeEE
Q 014007          198 VYNFADLK-------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FI-----MAHDSRIACF  264 (432)
Q Consensus       198 i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~-----~~~~~~i~~~  264 (432)
                      +||+.+..       ....+.+|...+..+.|.|++...++.  |+.|+.|++||+.++... .+     .+|...|.++
T Consensus       134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s--~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~  211 (380)
T 3iz6_a          134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT--GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL  211 (380)
T ss_dssp             EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE--ECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred             EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE--ECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence            99987532       344567888889999999987665433  458999999999985543 33     5789999999


Q ss_pred             EEcC-CCCEEEEEcCCCceEEEEECC-CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCC
Q 014007          265 ALTQ-DGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (432)
Q Consensus       265 ~~sp-~~~~l~~~~~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  342 (432)
                      +|++ ++++|++|+.|+. |++||++ .++.+..+.+  |...|.+++|+|++++|++|+.||+|++||+++++.+....
T Consensus       212 ~~~~~~~~~l~sgs~D~~-v~~wd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          212 SINSLNANMFISGSCDTT-VRLWDLRITSRAVRTYHG--HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             EECSSSCCEEEEEETTSC-EEEEETTTTCCCCEEECC--CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             EeecCCCCEEEEEECCCe-EEEEECCCCCcceEEECC--cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence            9987 8899999999999 9999998 4577777764  67899999999999999999999999999999876332110


Q ss_pred             CCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          343 PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                      .+.                      .      ....+...|++++|+|+|++|++|+.||.|++|++.
T Consensus       289 ~~~----------------------~------~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          289 REP----------------------D------RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             CCC----------------------S------SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred             ccc----------------------c------ccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence            000                      0      000122358999999999999999999999999874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.5e-33  Score=256.92  Aligned_cols=288  Identities=11%  Similarity=0.107  Sum_probs=204.5

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee--EEEeecccCcceeEEEEeeeC--CeEEEecCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQ  152 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~  152 (432)
                      +....+|.+.|++++|+|++++|++|+.++ |+||++.+...  .....+. +|...|.+++|++  ++..+++++.|  
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~d--   80 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYD--   80 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETT--
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCC--
Confidence            456788999999999999999999998554 99999986532  2334554 7899999999998  58899999998  


Q ss_pred             CCCCeEEEEeCCCC---------ceeEEee-cCCceEEEEEecC--ccEEEe---CCeEEEEEcCCCeeeEEEe------
Q 014007          153 YPLNKVMIWDDHQS---------RCIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIE------  211 (432)
Q Consensus       153 ~~~~~v~iwd~~~~---------~~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~------  211 (432)
                         +.|++||+.++         +.+..+. |...|.+++|+|+  +.++++   |+.|++||+++++.+..+.      
T Consensus        81 ---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           81 ---KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK  157 (351)
T ss_dssp             ---SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred             ---CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence               99999999887         4466666 8999999999998  887773   8999999998876544332      


Q ss_pred             -------eccCCcceEEEecC---CCcEEEEeecCCCCcEEEEEccCCc---eeeeeccCCceeEEEEcCCC----CEEE
Q 014007          212 -------TIANPKGLCAVSQG---VGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDG----QLLA  274 (432)
Q Consensus       212 -------~~~~~~~~~~~~~~---~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~i~~~~~sp~~----~~l~  274 (432)
                             .+...+.+++|+|+   +..+  ++ ++.++.+.+|+.....   ...+.+|...|++++|+|++    ++|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l--~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~  234 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWCPSRFSPEKL--AV-SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA  234 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEECCCSSSCCEE--EE-EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred             ccccccCCcccceeEEEeccCCCCCcEE--EE-ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence                   35567788999997   5533  32 3378888888777655   45567899999999999998    8999


Q ss_pred             EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC----eEEEEEecCCCCCCCCCCCCCCCCC
Q 014007          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG----TVHVFNLKVNSGSARSEPRSTSDPT  350 (432)
Q Consensus       275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~  350 (432)
                      +++.||. |++||++++........  .........+++....++.+..++    .+.+|+....               
T Consensus       235 s~~~dg~-i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  296 (351)
T 3f3f_A          235 TGCKDGR-IRIFKITEKLSPLASEE--SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV---------------  296 (351)
T ss_dssp             EEETTSC-EEEEEEEECC-----------------------------------------CCSEEE---------------
T ss_pred             EEcCCCe-EEEEeCCCCcCccccCC--cccceeccCCCcccccccccccccccceeeeecccccc---------------
Confidence            9999999 99999988766544432  223444445555555554444322    2222222221               


Q ss_pred             CCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                                          ..+..+.+|.+.|++++|+|++++|++++.||.|++|+++..
T Consensus       297 --------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          297 --------------------ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             --------------------EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             --------------------cEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence                                124567789999999999999999999999999999999653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.7e-32  Score=259.24  Aligned_cols=276  Identities=20%  Similarity=0.271  Sum_probs=230.1

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .....+|...|.+++|+  +.+|++|+ |+.|++||+.+++..  ..+. +|...|.++.++++  .+++++.|     +
T Consensus       152 ~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~--~l~s~s~d-----g  219 (445)
T 2ovr_B          152 LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECI--HTLY-GHTSTVRCMHLHEK--RVVSGSRD-----A  219 (445)
T ss_dssp             EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEETT--EEEEEETT-----S
T ss_pred             EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEE--EEEC-CCCCcEEEEEecCC--EEEEEeCC-----C
Confidence            45667899999999998  56888887 555999999888765  4554 68889999999765  47777777     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      .|++||+.+++.+..+. |...|.++++  ++.+++   .|+.|++||+++++.+..+..|...+..+.+  ++..+  +
T Consensus       220 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l--~  293 (445)
T 2ovr_B          220 TLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHV--V  293 (445)
T ss_dssp             EEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEE--E
T ss_pred             EEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEE--E
Confidence            99999999999998888 8999999999  455555   2899999999999999999988888888877  55543  3


Q ss_pred             eecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC-CcCceEEEE
Q 014007          233 CPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-DRAEIYSLA  310 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~-~~~~i~~~~  310 (432)
                      + ++.|+.|++||++++ .+..+.+|...+.++.+  ++++|++|+.||. |++||+++++++..+..+. |...|.+++
T Consensus       294 ~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  369 (445)
T 2ovr_B          294 S-GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQ  369 (445)
T ss_dssp             E-EETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEE
T ss_pred             E-EeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCCCCCEEEEE
Confidence            3 347999999999885 45667889999998887  5679999999999 9999999999999887532 668899999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE-----EecCCCceE
Q 014007          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF-----RLVEGSPYI  385 (432)
Q Consensus       311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~  385 (432)
                      |+  +++|++++.||.|++||+.+++.+                                   ..+     ..|.+.|++
T Consensus       370 ~~--~~~l~s~~~dg~v~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~v~~  412 (445)
T 2ovr_B          370 FN--KNFVITSSDDGTVKLWDLKTGEFI-----------------------------------RNLVTLESGGSGGVVWR  412 (445)
T ss_dssp             EC--SSEEEEEETTSEEEEEETTTCCEE-----------------------------------EEEEECTTGGGTCEEEE
T ss_pred             EC--CCEEEEEeCCCeEEEEECCCCcee-----------------------------------eeeeccccCCCCceEEE
Confidence            95  589999999999999999988732                                   122     256788999


Q ss_pred             EEEccCCCEEEEEecCCe----EEEEEecCC
Q 014007          386 VAFGHQKNTVVILGMDGS----FYRCQFDPV  412 (432)
Q Consensus       386 ~~~s~~~~~l~~~~~dg~----v~iw~~~~~  412 (432)
                      ++|+|++.+|++|+.||.    |++|+++.+
T Consensus       413 ~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          413 IRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            999999999999999997    999999765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=287.07  Aligned_cols=300  Identities=13%  Similarity=0.128  Sum_probs=212.8

Q ss_pred             cCCCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEcCCCeeEEEeecc-----------------cCcceeEEEEeeeCC
Q 014007           80 TSSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFREIFRRDFE-----------------RGGGIGVVEMLFRCN  140 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~-~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~-----------------~~~~~~v~~~~~~~~  140 (432)
                      ...+|...|++++|+|+ +..|++|++++ | |||+.+.+...  .+.                 .+|...|.+++|+|+
T Consensus       146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd  222 (902)
T 2oaj_A          146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ--SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN  222 (902)
T ss_dssp             CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE--EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred             ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE--EEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence            34679999999999996 46788888555 8 99998877653  332                 123577999999999


Q ss_pred             eEEEecCCCCCCCCCCeEEEEeCCCCceeEE--ee----c-------------CCceEEEEEe----cCc-cEEEe---C
Q 014007          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--LS----F-------------RSEVRSVKLR----RDR-IIVVL---E  193 (432)
Q Consensus       141 ~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~--~~----~-------------~~~v~~~~~~----~~~-~~~~~---d  193 (432)
                      +..+++++.|     +.|++||+.+++++..  +.    |             ...|.+++|+    |++ .++++   +
T Consensus       223 g~~lasgs~D-----g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          223 SLHIITIHED-----NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             SSEEEEEETT-----CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             CCEEEEEECC-----CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            9999999999     9999999999887653  21    2             3468889985    332 33332   1


Q ss_pred             -----CeEEEEE--------------------------------------------------------------------
Q 014007          194 -----QKIFVYN--------------------------------------------------------------------  200 (432)
Q Consensus       194 -----~~i~i~d--------------------------------------------------------------------  200 (432)
                           ..+.+|+                                                                    
T Consensus       298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~  377 (902)
T 2oaj_A          298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIE  377 (902)
T ss_dssp             TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEE
T ss_pred             CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEE
Confidence                 1455554                                                                    


Q ss_pred             ---cCCCeeeEE-----------------------------------------EeeccCCcceEEEecCCCcEEEEeecC
Q 014007          201 ---FADLKLLHQ-----------------------------------------IETIANPKGLCAVSQGVGSLVLVCPGL  236 (432)
Q Consensus       201 ---~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (432)
                         +.++.....                                         +.+|...+..++|+|+++  ++++ |+
T Consensus       378 ~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~--~laS-gs  454 (902)
T 2oaj_A          378 TMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT--AFIT-GH  454 (902)
T ss_dssp             EEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE--EEEE-EE
T ss_pred             EEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc--EEEE-ec
Confidence               322211100                                         001111122234455554  3443 45


Q ss_pred             CCCcEEEEEccCCcee---ee---------eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc------------
Q 014007          237 QKGQVRVEHYASKRTK---FI---------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT------------  292 (432)
Q Consensus       237 ~d~~i~i~d~~~~~~~---~~---------~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~------------  292 (432)
                      .|+.|++||+..+.+.   .+         .+|...|.+++|+|+|++||+|+.||+ |+|||+.+++            
T Consensus       455 ~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt-V~lwd~~~~~~~~~~~~~~~~~  533 (902)
T 2oaj_A          455 SNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD-VVLFKYEVNQFYSVENRPESGD  533 (902)
T ss_dssp             TTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC-EEEEEEEECCC-----------
T ss_pred             CCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE-EEEEEecCccccCccccCCCcc
Confidence            8999999999875432   11         178899999999999999999999999 9999997663            


Q ss_pred             ---------------------------------eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          293 ---------------------------------LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       293 ---------------------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                                                       ++..+..  |.+.|++++||||| +||+|+.|++|+|||+++...+.
T Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~  610 (902)
T 2oaj_A          534 LEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIY  610 (902)
T ss_dssp             ----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred             cceeeeeccccCCccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEE
Confidence                                             3455553  77899999999999 99999999999999987764110


Q ss_pred             CCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE-ecCCCceEEEEc-----cCC---CEEEEEecCCeEEEEEec
Q 014007          340 RSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR-LVEGSPYIVAFG-----HQK---NTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-----~~~---~~l~~~~~dg~v~iw~~~  410 (432)
                                          ..          .+..+. +|.+.|++++|+     |||   ++|++|+.||+|++|++.
T Consensus       611 --------------------~~----------~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~  660 (902)
T 2oaj_A          611 --------------------ME----------NIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKIL  660 (902)
T ss_dssp             --------------------EE----------EGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             --------------------Ee----------ehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEe
Confidence                                00          001132 788899999999     885   899999999999999996


Q ss_pred             CC-CCCcceEeeecc
Q 014007          411 PV-NGGEMTQLEYNN  424 (432)
Q Consensus       411 ~~-~~~~~~~~~~~~  424 (432)
                      +. +|+....+..+.
T Consensus       661 p~~~g~~~~~~~~~~  675 (902)
T 2oaj_A          661 PASGGKFDVQLMDIT  675 (902)
T ss_dssp             ECGGGCEEEEEEEEE
T ss_pred             cCCCCcEEEEecCce
Confidence            65 444444554444

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.8e-33  Score=259.26  Aligned_cols=248  Identities=13%  Similarity=0.158  Sum_probs=209.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      ...|...|++++|+|++++|++|+. +.|++|++.+.+..  ..+. +|...+.++.|++  ..+++++.|     +.|+
T Consensus       130 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~~~v~~~~~~~--~~l~~~~~d-----g~i~  199 (401)
T 4aez_A          130 ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL--RTMA-GHQARVGCLSWNR--HVLSSGSRS-----GAIH  199 (401)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEEET--TEEEEEETT-----SEEE
T ss_pred             ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE--EEec-CCCCceEEEEECC--CEEEEEcCC-----CCEE
Confidence            3348899999999999999999984 45999999887765  4554 6889999999965  477777888     9999


Q ss_pred             EEeCC-CCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          160 IWDDH-QSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       160 iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      +||+. .+..+..+. |...|.+++|+|++.++++   |+.|++||+++++.+..+..+...+..++|+|++..+++..+
T Consensus       200 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~  279 (401)
T 4aez_A          200 HHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG  279 (401)
T ss_dssp             EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC
T ss_pred             EEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec
Confidence            99998 456667776 9999999999999988884   899999999999999999889999999999999988766554


Q ss_pred             cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEE--EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT--SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~--~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s  312 (432)
                      |+.|+.|++||++++.......+...|.+++|+|++++|++  |+.||. |++||+.+++.........|...|.+++|+
T Consensus       280 gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~-i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s  358 (401)
T 4aez_A          280 GTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALS  358 (401)
T ss_dssp             CTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCE-EEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCc-EEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence            55899999999998766655567889999999999999999  558999 999999998776665444477899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          313 SNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      |+|++|++++.||.|++||+.+++.+.
T Consensus       359 ~dg~~l~s~~~dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          359 PDGRILSTAASDENLKFWRVYDGDHVK  385 (401)
T ss_dssp             TTSSEEEEECTTSEEEEEECCC-----
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcccc
Confidence            999999999999999999999987543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.6e-33  Score=295.21  Aligned_cols=286  Identities=16%  Similarity=0.203  Sum_probs=236.4

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPL  155 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~  155 (432)
                      ....+|...|++++|+|+|++|++++. +.|+|||+.+++..  ..+. +|...+.++.|++  +...+++++.|     
T Consensus       651 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d-----  722 (1249)
T 3sfz_A          651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV--HTYD-EHSEQVNCCHFTNKSNHLLLATGSND-----  722 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEE-CCSSCEEEEEECSSSSCCEEEEEETT-----
T ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE--EEEc-CCCCcEEEEEEecCCCceEEEEEeCC-----
Confidence            456789999999999999999999985 45999999988766  4554 6889999999998  66789999998     


Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEe--------------------
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIE--------------------  211 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~--------------------  211 (432)
                      +.|++||+.+++++..+. |...|.+++|+|++.++++   ||.|++||+.+++....+.                    
T Consensus       723 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  802 (1249)
T 3sfz_A          723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK  802 (1249)
T ss_dssp             SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBC
T ss_pred             CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEE
Confidence            999999999999998888 9999999999999998884   8999999998776544332                    


Q ss_pred             -----------------------------------eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeee
Q 014007          212 -----------------------------------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIM  255 (432)
Q Consensus       212 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~  255 (432)
                                                         .+...+..++|+|++..++.   ++.|+.|++||+.++ ....+.
T Consensus       803 ~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~---~~~dg~v~vwd~~~~~~~~~~~  879 (1249)
T 3sfz_A          803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI---ALSQYCVELWNIDSRLKVADCR  879 (1249)
T ss_dssp             CCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE---ECSSSCEEEEETTTTEEEEEEC
T ss_pred             EEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE---EeCCCeEEEEEcCCCceeeecC
Confidence                                               34556778888888875443   347999999999885 455678


Q ss_pred             ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc-----------------------------eEEEEEeC------
Q 014007          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-----------------------------LLQEVRRG------  300 (432)
Q Consensus       256 ~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~-----------------------------~~~~~~~~------  300 (432)
                      +|...|.+++|+|+|++|++++.|+. |++||+.+..                             .+......      
T Consensus       880 ~h~~~v~~v~~spdg~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  958 (1249)
T 3sfz_A          880 GHLSWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY  958 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred             CCccceEEEEECCCCCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence            99999999999999999999999999 9999975310                             00011100      


Q ss_pred             CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC
Q 014007          301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE  380 (432)
Q Consensus       301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (432)
                      .....+.+++|+|+++++++|+.+|.|++||+.+++.                                   +..+.+|.
T Consensus       959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~-----------------------------------~~~~~~h~ 1003 (1249)
T 3sfz_A          959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV-----------------------------------FSSGVGHK 1003 (1249)
T ss_dssp             ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC-----------------------------------EEECCCCS
T ss_pred             cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-----------------------------------eeecccCC
Confidence            0235799999999999999999999999999988763                                   33456788


Q ss_pred             CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          381 GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       381 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +.|.+++|+|++++|++++.||.|++|++..
T Consensus      1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A         1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             SCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence            8999999999999999999999999999754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=260.02  Aligned_cols=287  Identities=8%  Similarity=0.050  Sum_probs=226.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe---eEEEeecc-------------------------------------
Q 014007           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR---EIFRRDFE-------------------------------------  125 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~---~~~~~~~~-------------------------------------  125 (432)
                      .++.+++|+++|++|+++.++.|++||+.+++   ........                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI   84 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence            47899999999998888888889999998776   22111100                                     


Q ss_pred             --------------cCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEeCC--CCceeEEee---cCCceEEEEEec
Q 014007          126 --------------RGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDH--QSRCIGELS---FRSEVRSVKLRR  185 (432)
Q Consensus       126 --------------~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd~~--~~~~~~~~~---~~~~v~~~~~~~  185 (432)
                                    ..+...|.+++|++++..| ++++.|     +.|++||+.  +++.+..+.   +...|.+++|+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             ---------------CCCCCEEEEEECTTSSEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred             cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC-----CeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence                          0123369999999999885 888888     999999999  888887774   678999999999


Q ss_pred             CccEEEe---CCeEEEEEcCCCeeeE----EEeeccCCcceEEEecC---CCcEEEEeecCCCCcEEEEEccCCc-eee-
Q 014007          186 DRIIVVL---EQKIFVYNFADLKLLH----QIETIANPKGLCAVSQG---VGSLVLVCPGLQKGQVRVEHYASKR-TKF-  253 (432)
Q Consensus       186 ~~~~~~~---d~~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~d~~i~i~d~~~~~-~~~-  253 (432)
                      ++.++++   ++.|++|++.+++...    .+..|...+.+++|+|+   ++.  +++ ++.|+.|++||++++. +.. 
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~--l~s-~~~d~~i~vwd~~~~~~~~~~  236 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF--IIT-SDRDEHIKISHYPQCFIVDKW  236 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEE--EEE-EETTSCEEEEEESCTTCEEEE
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcE--EEE-EcCCCcEEEEECCCCceeeee
Confidence            9988884   7899999998876544    67788899999999999   543  333 3489999999998754 334 


Q ss_pred             eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC-----------------------CCcCceEEEE
Q 014007          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-----------------------ADRAEIYSLA  310 (432)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-----------------------~~~~~i~~~~  310 (432)
                      +.+|...|.+++|+ ++++|++++.|+. |++||+++++++..+..+                       .....|.+++
T Consensus       237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  314 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII  314 (450)
T ss_dssp             CCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred             ecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence            55899999999999 9999999999999 999999999999888732                       1235799999


Q ss_pred             ECCCCCEEEEEe-CCCeEEEEEe--cCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007          311 FSSNAQWLAVSS-DKGTVHVFNL--KVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (432)
Q Consensus       311 ~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  387 (432)
                      |+|++++|++++ .|+.|+||++  .++..                                ...+..+..| +.|.+++
T Consensus       315 ~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~--------------------------------l~~~~~~~~~-~~v~~~~  361 (450)
T 2vdu_B          315 KSKNLPFVAFFVEATKCIIILEMSEKQKGD--------------------------------LALKQIITFP-YNVISLS  361 (450)
T ss_dssp             ECSSSSEEEEEETTCSEEEEEEECSSSTTC--------------------------------EEEEEEEECS-SCEEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEEeccCCCCc--------------------------------eeeccEeccC-CceEEEE
Confidence            999999999998 8999999999  33321                                0114456677 7899999


Q ss_pred             EccCCCEEEEEec------CCeEEEEEecCCCCC
Q 014007          388 FGHQKNTVVILGM------DGSFYRCQFDPVNGG  415 (432)
Q Consensus       388 ~s~~~~~l~~~~~------dg~v~iw~~~~~~~~  415 (432)
                      |+|++.++++++.      +..|.+|.++...++
T Consensus       362 ~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~  395 (450)
T 2vdu_B          362 AHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENS  395 (450)
T ss_dssp             EETTEEEEEECCTTCCSSCCCSEEEEEEETTTTE
T ss_pred             ecCCcEEEEEecccCCCCCCcceEEEEEEcCCCe
Confidence            9996544444443      556899999877553

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.8e-32  Score=256.81  Aligned_cols=279  Identities=16%  Similarity=0.273  Sum_probs=227.4

Q ss_pred             ccCCCCCCCe-EEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           79 STSSSPPPTL-LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        79 ~~~~~~~~~v-~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ....+|.+.| .+  ++++|++|++|+ |+.|++||+.+++..  ..+. +|...|.++.|+++  .+++++.|     +
T Consensus       112 ~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~--~l~s~~~d-----g  179 (445)
T 2ovr_B          112 KVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLV-GHTGGVWSSQMRDN--IIISGSTD-----R  179 (445)
T ss_dssp             EEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEE--EECC-CCSSCEEEEEEETT--EEEEEETT-----S
T ss_pred             EEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEE--EEEc-CCCCCEEEEEecCC--EEEEEeCC-----C
Confidence            4567888875 55  455688999988 455999999888765  5565 78999999999854  77777888     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      .|++||+.+++.+..+. |...|.++.++++....+ .|+.|++||+.+++.+..+..|...+.++.+  +++.++.   
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~---  254 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVS---  254 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEE---
T ss_pred             eEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEE---
Confidence            99999999999999988 999999999975543333 3899999999999999999999998888877  5554432   


Q ss_pred             cCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007          235 GLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~  313 (432)
                      |+.|+.|++||+++.. +..+.+|...|.++.|  ++.+|++++.|+. |++||+++++++..+..  |...+.++.+  
T Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~~v~~~~~--  327 (445)
T 2ovr_B          255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTG--HQSLTSGMEL--  327 (445)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECC--CCSCEEEEEE--
T ss_pred             EcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcC--CcccEEEEEE--
Confidence            3479999999998854 5567789999999999  8899999999999 99999999999988875  5678888887  


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe---cCCCceEEEEcc
Q 014007          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL---VEGSPYIVAFGH  390 (432)
Q Consensus       314 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~  390 (432)
                      ++++|++++.||.|++||+++++.                                   +..+..   |.+.|.+++|+ 
T Consensus       328 ~~~~l~~~~~dg~i~vwd~~~~~~-----------------------------------~~~~~~~~~~~~~v~~~~~~-  371 (445)
T 2ovr_B          328 KDNILVSGNADSTVKIWDIKTGQC-----------------------------------LQTLQGPNKHQSAVTCLQFN-  371 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCE-----------------------------------EEEECSTTSCSSCEEEEEEC-
T ss_pred             eCCEEEEEeCCCeEEEEECCCCcE-----------------------------------EEEEccCCCCCCCEEEEEEC-
Confidence            567999999999999999988763                                   223443   67789999995 


Q ss_pred             CCCEEEEEecCCeEEEEEecCCCCCcceEe
Q 014007          391 QKNTVVILGMDGSFYRCQFDPVNGGEMTQL  420 (432)
Q Consensus       391 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~  420 (432)
                       +++|++|+.||.|++|++..  ++.+..+
T Consensus       372 -~~~l~s~~~dg~v~iwd~~~--~~~~~~~  398 (445)
T 2ovr_B          372 -KNFVITSSDDGTVKLWDLKT--GEFIRNL  398 (445)
T ss_dssp             -SSEEEEEETTSEEEEEETTT--CCEEEEE
T ss_pred             -CCEEEEEeCCCeEEEEECCC--Cceeeee
Confidence             68999999999999998754  4444433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-33  Score=256.80  Aligned_cols=248  Identities=15%  Similarity=0.167  Sum_probs=205.7

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC--eEEEecCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPL  155 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~  155 (432)
                      ....+|.+.|++++|+|++++|++|+ |+.|+||++..........+. +|...|.++.|+++  +..+++++.|     
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d-----   78 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYD-----   78 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccC-----
Confidence            45678999999999999999999998 555999999865555556665 78999999999876  8999999999     


Q ss_pred             CeEEEEeCCCCc--eeEEee-cCCceEEEEEecC--ccEEEe---CCeEEEEEcCCCe--eeEEEeeccCCcceEEEec-
Q 014007          156 NKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQ-  224 (432)
Q Consensus       156 ~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~-  224 (432)
                      +.|++||+.+++  .+..+. |...|.+++|+|+  +.++++   |+.|++||++++.  ....+..+...+..++|+| 
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence            999999999886  566666 8999999999998  777773   8999999998873  3445667888999999999 


Q ss_pred             ------------CCCcEEEEeecCCCCcEEEEEccCCc-----eeeeeccCCceeEEEEcCC---CCEEEEEcCCCceEE
Q 014007          225 ------------GVGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQD---GQLLATSSTKGTLVR  284 (432)
Q Consensus       225 ------------~~~~~~~~~~g~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~~~~sp~---~~~l~~~~~dg~~i~  284 (432)
                                  ++..+  ++ ++.|+.|++||++...     ...+.+|...|.+++|+|+   +++|++++.||. |+
T Consensus       159 ~~~~~~~~~~~~~~~~l--~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~  234 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKF--VT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CI  234 (379)
T ss_dssp             C----------CTTCEE--EE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EE
T ss_pred             cccccccccCCCCCCEE--EE-EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EE
Confidence                        45543  33 3489999999998742     3456789999999999999   899999999999 99


Q ss_pred             EEECCCCc---eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          285 IFNTLDGT---LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       285 vwd~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +||+++++   ....+....|...|.+++|+|+|++|++++.||.|++|++....
T Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            99999875   22233323366889999999999999999999999999998543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.3e-33  Score=258.58  Aligned_cols=279  Identities=11%  Similarity=0.097  Sum_probs=222.7

Q ss_pred             CeEEEEEcCCCCEEE-EEc-CCcEEEEEcCCCeeE--EEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEE
Q 014007           87 TLLHISFNQDHGCFA-AGT-DHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~-~~~-~~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iw  161 (432)
                      ....++++|+...++ +++ ++.|+||++......  ....+. +|...|.+++|++ ++..+++++.|     +.|++|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~d-----g~v~vw  109 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSED-----CTVMVW  109 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETT-----SEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCC-----CeEEEE
Confidence            344689999876554 345 555999998654332  112343 7899999999999 89999999999     999999


Q ss_pred             eCCCC-------ceeEEee-cCCceEEEEEecCc-cEEEe---CCeEEEEEcCCCeeeEEE--eeccCCcceEEEecCCC
Q 014007          162 DDHQS-------RCIGELS-FRSEVRSVKLRRDR-IIVVL---EQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQGVG  227 (432)
Q Consensus       162 d~~~~-------~~~~~~~-~~~~v~~~~~~~~~-~~~~~---d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~  227 (432)
                      |+.++       +.+..+. |...|.+++|+|++ .++++   |+.|++||+++++.+..+  ..|...+.+++|+|+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  189 (402)
T 2aq5_A          110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA  189 (402)
T ss_dssp             ECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS
T ss_pred             EccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC
Confidence            99987       5677777 99999999999998 46663   899999999999999988  77889999999999988


Q ss_pred             cEEEEeecCCCCcEEEEEccCCce-eee-eccCCc-eeEEEEcCCCCEEEEE---cCCCceEEEEECCCCce-EEEEEeC
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRT-KFI-MAHDSR-IACFALTQDGQLLATS---STKGTLVRIFNTLDGTL-LQEVRRG  300 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~-~~~-~~~~~~-i~~~~~sp~~~~l~~~---~~dg~~i~vwd~~~~~~-~~~~~~~  300 (432)
                      .++.+   +.|+.|++||++++.. ..+ ..|... +.++.|+|++++|++|   +.|+. |++||+++++. +..... 
T Consensus       190 ~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~~~-  264 (402)
T 2aq5_A          190 LICTS---CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQEL-  264 (402)
T ss_dssp             CEEEE---ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEEEC-
T ss_pred             EEEEE---ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEEec-
Confidence            65533   3899999999998554 445 577766 8999999999999999   78999 99999998765 333332 


Q ss_pred             CCcCceEEEEECCCCCEEEE-EeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe-
Q 014007          301 ADRAEIYSLAFSSNAQWLAV-SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-  378 (432)
Q Consensus       301 ~~~~~i~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  378 (432)
                      .+...+.+++|+|++++|++ ++.||.|++||+.+++..                                  +..+.. 
T Consensus       265 ~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~----------------------------------~~~l~~~  310 (402)
T 2aq5_A          265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF----------------------------------LHYLSMF  310 (402)
T ss_dssp             CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC----------------------------------EEEEEEE
T ss_pred             cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc----------------------------------eEeeccc
Confidence            25678999999999999975 557999999999987621                                  112222 


Q ss_pred             -cCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          379 -VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       379 -~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                       |.+.|.+++|+|++.++++  .++.+++|++...
T Consensus       311 ~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          311 SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             ccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence             4588999999999998764  5779999999763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.5e-32  Score=257.72  Aligned_cols=277  Identities=17%  Similarity=0.204  Sum_probs=225.8

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeee--CCeEEEecCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPL  155 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~~~~  155 (432)
                      ....+|.+.|++++|+|++ +|++|+ |+.|++||+.+++..  ..+. +|...|.++.+.  +++..+++++.|     
T Consensus       156 ~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d-----  226 (464)
T 3v7d_B          156 LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT--HVFE-GHNSTVRCLDIVEYKNIKYIVTGSRD-----  226 (464)
T ss_dssp             EEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEEESSSCEEEEEEETT-----
T ss_pred             EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE--EEEC-CCCCccEEEEEecCCCCCEEEEEcCC-----
Confidence            4566899999999999998 777777 566999999988765  4554 688899999887  678999999999     


Q ss_pred             CeEEEEeCCCCce-----------------------eEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeE
Q 014007          156 NKVMIWDDHQSRC-----------------------IGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLH  208 (432)
Q Consensus       156 ~~v~iwd~~~~~~-----------------------~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~  208 (432)
                      +.|++||+.++..                       +..+. |...+.++  ++++.++++   |+.|++||+++++.+.
T Consensus       227 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~  304 (464)
T 3v7d_B          227 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY  304 (464)
T ss_dssp             SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            9999999987653                       23344 67777776  556666663   8999999999999999


Q ss_pred             EEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007          209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd  287 (432)
                      .+..|...+..++|+|+++.++.   |+.|+.|++||++++ .+..+.+|...|.+++|+  +++|++++.||. |++||
T Consensus       305 ~~~~~~~~v~~~~~~~~~~~l~s---g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd  378 (464)
T 3v7d_B          305 ILSGHTDRIYSTIYDHERKRCIS---ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWD  378 (464)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEE---EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEE
T ss_pred             EecCCCCCEEEEEEcCCCCEEEE---EeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEE
Confidence            99999999999999999885543   348999999999874 456778999999999997  579999999999 99999


Q ss_pred             CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccccee
Q 014007          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF  367 (432)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (432)
                      +.+++....+.   +...+..++|++++++|++++ ||.|++||+++++.+...                          
T Consensus       379 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~--------------------------  428 (464)
T 3v7d_B          379 ANDYSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN--------------------------  428 (464)
T ss_dssp             TTTCCEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESC--------------------------
T ss_pred             CCCCceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehh--------------------------
Confidence            99988877765   556788899999999999998 899999999998743211                          


Q ss_pred             ecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                              +..|.+.|.+++|+ +...+++++.||.+++|-+|.
T Consensus       429 --------~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ldf  463 (464)
T 3v7d_B          429 --------ILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEILDF  463 (464)
T ss_dssp             --------TTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEEEC
T ss_pred             --------hccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEeec
Confidence                    12356779999997 445666777888888887753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2e-32  Score=257.25  Aligned_cols=254  Identities=13%  Similarity=0.109  Sum_probs=204.3

Q ss_pred             CcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCC----------CceeEEee-cCCceEEEEEecCcc-EEEe-
Q 014007          127 GGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ----------SRCIGELS-FRSEVRSVKLRRDRI-IVVL-  192 (432)
Q Consensus       127 ~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~----------~~~~~~~~-~~~~v~~~~~~~~~~-~~~~-  192 (432)
                      .|...|.+++|+++ +.++++++.+     |.|++||+.+          .+.+..+. |...|.+++|+|++. ++++ 
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~d-----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPS-----SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSS-----SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCC-----CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            58889999999997 7889999988     9999999986          56667777 899999999999987 6663 


Q ss_pred             --CCeEEEEEcCCCee-------eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC----ceeeeeccCC
Q 014007          193 --EQKIFVYNFADLKL-------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDS  259 (432)
Q Consensus       193 --d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~~  259 (432)
                        ||.|++||+.++..       ...+..|...+..++|+|++..++++  ++.|+.|++||++..    ....+..|..
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS--VADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEE--EETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEE--EeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence              89999999987322       45566788889999999976665443  347999999999974    4556779999


Q ss_pred             ceeEEEEcCCCC-EEEEEcCCCceEEEEECCC-CceEEEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCC
Q 014007          260 RIACFALTQDGQ-LLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       260 ~i~~~~~sp~~~-~l~~~~~dg~~i~vwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~  336 (432)
                      .|++++|+|++. +|++|+.||. |++||+++ .+.+..+..  |...|.+++|+|+++ +|++++.||.|+|||+....
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            999999999987 6889999999 99999998 567777875  668999999999985 68999999999999998744


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC-EEEEEecCCeEEEEEecC
Q 014007          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~  411 (432)
                      ......                     .........+..+.+|.+.|+.++|+|+++ +|++++.||.|+||+++.
T Consensus       356 ~~~~~~---------------------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          356 EEQSTE---------------------DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             CCCCHH---------------------HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             cccCcc---------------------ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            211000                     000000112445667888999999999999 899999999999999865

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=254.02  Aligned_cols=244  Identities=12%  Similarity=0.147  Sum_probs=204.0

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC--CCceeEEee-cCCceEEEEEecC--ccEEEe---CCeEEE
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFV  198 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i  198 (432)
                      +|...|.+++|++++..+++++.|     +.|++||+.  +++.+..+. |...|.+++|+++  +.++++   |+.|++
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             ECCCCEEEEEECSSSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             CCcccEEEEEEcCCCCEEEEEECC-----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            799999999999999999999988     999999998  556677777 9999999999976  777773   899999


Q ss_pred             EEcCCCe--eeEEEeeccCCcceEEEecC--CCcEEEEeecCCCCcEEEEEccCC---ceeeeeccCCceeEEEEcC---
Q 014007          199 YNFADLK--LLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQ---  268 (432)
Q Consensus       199 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~~i~~~~~sp---  268 (432)
                      ||+.+++  .+..+..|...+.+++|+|+  +..++.   ++.|+.|++||++..   ....+..|...|.+++|+|   
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV---ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE---EETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEE---ecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            9999987  67777778899999999999  664433   348999999999885   3445678999999999999   


Q ss_pred             ----------CCCEEEEEcCCCceEEEEECCCCce----EEEEEeCCCcCceEEEEECCC---CCEEEEEeCCCeEEEEE
Q 014007          269 ----------DGQLLATSSTKGTLVRIFNTLDGTL----LQEVRRGADRAEIYSLAFSSN---AQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       269 ----------~~~~l~~~~~dg~~i~vwd~~~~~~----~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd  331 (432)
                                ++.+|++++.|+. |++||+++++.    ...+.  .|...|.+++|+|+   +++|++++.||.|++||
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             ---------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             cccccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence                      6999999999999 99999987753    33444  36789999999999   89999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +.++......                              .+.....|.+.|++++|+|++++|++++.||.|++|+++.
T Consensus       238 ~~~~~~~~~~------------------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          238 QDNEQGPWKK------------------------------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             ESSTTSCCEE------------------------------EESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCCCcccee------------------------------eeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            9986521100                              0001123667899999999999999999999999999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8e-32  Score=252.52  Aligned_cols=245  Identities=12%  Similarity=0.163  Sum_probs=209.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      ...|...|++|+|+|+|++|++|+ |+.|+|||+.+++..  ..+. +|...+.++.+++  ..+++++.|     +.++
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~--~~~~-~h~~~v~~~s~~~--~~l~sgs~d-----~~i~  212 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--RNMT-SHSARVGSLSWNS--YILSSGSRS-----GHIH  212 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEET--TEEEEEETT-----SEEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE--EEEe-CCCCceEEEeeCC--CEEEEEeCC-----Ccee
Confidence            456888999999999999999998 455999999988766  4554 6888898888865  477888888     9999


Q ss_pred             EEeCCCC-ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCe----eeEEEeeccCCcceEEEecCCCcEE
Q 014007          160 IWDDHQS-RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLK----LLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       160 iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      +||.... ..+..+. |...+..+.+++++.++++   |+.+++|+..+++    .+.....+...+..++|+|.+..++
T Consensus       213 ~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~l  292 (420)
T 4gga_A          213 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL  292 (420)
T ss_dssp             EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEE
T ss_pred             EeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEE
Confidence            9998865 4556666 8999999999999998884   8999999998764    3456667888999999999998887


Q ss_pred             EEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc--CCCceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  308 (432)
                      ...+|+.|+.|++||+.++.......+...+.++.|+|+++.|++++  .|+. |+|||+.+++++.++.+  |...|++
T Consensus       293 a~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~-I~iwd~~~~~~v~~l~g--H~~~V~~  369 (420)
T 4gga_A          293 ATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLS  369 (420)
T ss_dssp             EEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred             EEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE-EEEEECCCCcEEEEEcC--CCCCEEE
Confidence            76667899999999999977766666677899999999999888765  7899 99999999999999985  6789999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       309 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      ++|+|||++|++|+.|++|+|||+......
T Consensus       370 l~~spdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          370 LTMSPDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             EEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence            999999999999999999999999876543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.9e-31  Score=250.98  Aligned_cols=279  Identities=10%  Similarity=0.039  Sum_probs=228.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEe---ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      ...+.+++|+|++.+++++++++ |++||+.+++.....   .+. +|...+.++.|++++..+++++.+     +.|++
T Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~  195 (433)
T 3bws_A          122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNELWVSQMQA-----NAVHV  195 (433)
T ss_dssp             SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTEEEEEEGGG-----TEEEE
T ss_pred             CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccccc-ccCCceeEEEEcCCCEEEEEECCC-----CEEEE
Confidence            34567899999777777777554 999999887765322   222 677899999999999999999988     99999


Q ss_pred             EeCCCCceeEEee-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      ||+.+++.+..+. +...+.+++|+|++..++ +   ++.|++||+++++.+..+..+ ..+..++++|+++.++++..+
T Consensus       196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          196 FDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             EETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEE
T ss_pred             EECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECC
Confidence            9999999988887 888999999999998764 2   789999999999888777653 447789999999877665432


Q ss_pred             C-----CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEE-EEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007          236 L-----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (432)
Q Consensus       236 ~-----~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l-~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~  309 (432)
                      .     .|+.|++||++++.......|...+.+++|+|+++.+ ++++.++. |++||+.+++.+..+.   +...+.++
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~~~~~~~~---~~~~~~~~  350 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK-IEVYDLKEKKVQKSIP---VFDKPNTI  350 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSSEEEE
T ss_pred             CCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE-EEEEECCCCcEEEEec---CCCCCCeE
Confidence            2     4789999999987776666777789999999999755 66688999 9999999999988887   45789999


Q ss_pred             EECCCCCEEEEEeC---------------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeE
Q 014007          310 AFSSNAQWLAVSSD---------------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA  374 (432)
Q Consensus       310 ~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (432)
                      +|+|+|++|++++.               ||.|++||+.+++.                                   +.
T Consensus       351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~-----------------------------------~~  395 (433)
T 3bws_A          351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV-----------------------------------KE  395 (433)
T ss_dssp             EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE-----------------------------------EE
T ss_pred             EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE-----------------------------------EE
Confidence            99999999988876               57999999988762                                   22


Q ss_pred             EEEecCCCceEEEEccCCCEEEEEec-CCeEEEEEec
Q 014007          375 QFRLVEGSPYIVAFGHQKNTVVILGM-DGSFYRCQFD  410 (432)
Q Consensus       375 ~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~  410 (432)
                      .+.. ...+..++|+|+|++|++++. ||.|++|+++
T Consensus       396 ~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          396 FWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            2333 446899999999999998875 9999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-33  Score=259.44  Aligned_cols=258  Identities=10%  Similarity=0.033  Sum_probs=206.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      ..-...|.+++|+|||+++|++++++ |+  +....     ..+. +|...+..++|+|++       .+     +.+.+
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-----~~l~-gh~~~v~~V~FsPdg-------~~-----~~~~~   71 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA-----KDIN-CNSKNLFHVKEFPLE-------FE-----NKLDF   71 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC-----SCCS-SBGGGTEEEEEECCC-------CC-----CTTTT
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--ccccc-----ceec-CCCccEEEEEECCCC-------Cc-----ceEEE
Confidence            33457899999999999999999555 88  64433     3344 799999999999998       34     66777


Q ss_pred             EeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccC-----CcceEEEecCCCcEEEE
Q 014007          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN-----PKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       161 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  232 (432)
                      |+.+ +..+..+.+...|.+++|+|+|..+++   ||.|++||...  ++..+. |..     .+.+++|+|+|+.++.+
T Consensus        72 ~~~~-~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg  147 (588)
T 2j04_A           72 ELAQ-QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG  147 (588)
T ss_dssp             SCCC-SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred             EeCC-CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEE
Confidence            7643 333444457888999999999998884   99999999543  555565 554     48899999999976543


Q ss_pred             eecCCCCcEEEEEccCCc--------eeee----eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce---EEEE
Q 014007          233 CPGLQKGQVRVEHYASKR--------TKFI----MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL---LQEV  297 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~--------~~~~----~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~---~~~~  297 (432)
                         +.||.|++||+..+.        +..+    .+|...|.+++|+|+|  |++++.|+. |++||+.+++.   ..++
T Consensus       148 ---s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~~~~~~~tL  221 (588)
T 2j04_A          148 ---NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASSHQPVSRMI  221 (588)
T ss_dssp             ---ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSSSCCCEEEE
T ss_pred             ---cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCccccceeee
Confidence               489999999999864        3555    5677899999999999  788888999 99999988774   3566


Q ss_pred             EeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE
Q 014007          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR  377 (432)
Q Consensus       298 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (432)
                      ..+ |...|.+++|+  |+.||+++ +++|++||+.+++                                    ...+.
T Consensus       222 ~~~-h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~------------------------------------~~~~~  261 (588)
T 2j04_A          222 QNA-SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYS------------------------------------ISSLK  261 (588)
T ss_dssp             ECC-CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTE------------------------------------EEEEE
T ss_pred             ccc-ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCe------------------------------------EEEEE
Confidence            533 66899999999  68999997 6999999999876                                    32334


Q ss_pred             -ecCCCceEEEE--ccCCCEEEEEecCCeEEEEEec
Q 014007          378 -LVEGSPYIVAF--GHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       378 -~~~~~v~~~~~--s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                       +|.+.|+.++|  +||+..|+++++||. ++|.++
T Consensus       262 ~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          262 TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence             79999999999  999999999999999 999986

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.7e-33  Score=253.72  Aligned_cols=245  Identities=13%  Similarity=0.114  Sum_probs=193.2

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc------------CCcEEEEEcCCCeeEE--Eeecc----cCcceeEEEEeeeCCe
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT------------DHGFRIYNCDPFREIF--RRDFE----RGGGIGVVEMLFRCNI  141 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~------------~~~i~iw~~~~~~~~~--~~~~~----~~~~~~v~~~~~~~~~  141 (432)
                      .+..|.+.|.+++++  +..+++|.            ++.+++|+++......  .....    ..+...+..++|+||+
T Consensus        68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            356788889888765  45666653            3449999986543221  11111    1234567889999998


Q ss_pred             EEE--ecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEE--eeccC
Q 014007          142 LAL--VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQI--ETIAN  215 (432)
Q Consensus       142 ~~~--~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~--~~~~~  215 (432)
                      ..+  ++++.|     ++|+|||+.+++++..+.|...|.+++|+|||.++++  ++.+.+|+..+++.+...  ..+..
T Consensus       146 ~~la~as~~~d-----~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~  220 (365)
T 4h5i_A          146 TVAAIASSKVP-----AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNW  220 (365)
T ss_dssp             SCEEEEESCSS-----CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTE
T ss_pred             CEEEEEECCCC-----CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCC
Confidence            765  567778     9999999999999999999999999999999999884  788889988887765433  44667


Q ss_pred             CcceEEEecCCCcEEEEeecCCCC----cEEEEEccCCc-----eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEE
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKG----QVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~----~i~i~d~~~~~-----~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vw  286 (432)
                      .+..++|+|++..++.++   .++    .+++|++....     ...+.+|...|++++|+|+|++||+|+.|+. |+||
T Consensus       221 ~v~~v~fspdg~~l~~~s---~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~-V~iw  296 (365)
T 4h5i_A          221 SLSKINFIADDTVLIAAS---LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS-IALV  296 (365)
T ss_dssp             EEEEEEEEETTEEEEEEE---ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC-EEEE
T ss_pred             CEEEEEEcCCCCEEEEEe---cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE-EEEE
Confidence            788999999998665443   233    57788877633     3456789999999999999999999999999 9999


Q ss_pred             ECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      |+++++++..+..+ |...|++++|+|||++|++|+.|++|+|||+....
T Consensus       297 d~~~~~~~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          297 KLKDLSMSKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             ETTTTEEEEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             ECCCCcEEEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            99999999887533 78999999999999999999999999999996543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-33  Score=259.51  Aligned_cols=239  Identities=12%  Similarity=0.095  Sum_probs=194.0

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC--ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEc
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNF  201 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~  201 (432)
                      +...|.+++|++++..+++++.|     +.|++||+.++  +.+..+. |...|.+++|+|++.++++   |+.|++||+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             CCCcEEEEEECCCCCEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            55689999999999999999998     99999999988  6777777 9999999999999988874   899999999


Q ss_pred             CCCe---eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeec-cCCceeEEEEcCCCCEE
Q 014007          202 ADLK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMA-HDSRIACFALTQDGQLL  273 (432)
Q Consensus       202 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~-~~~~i~~~~~sp~~~~l  273 (432)
                      .+++   ....+..|...+..++|+|+++.++.+   +.|+.|++||++...    ...+.. |...|.+++|+|++++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVG---SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEE---ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEE---ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            9877   566677788999999999998866533   379999999999864    566776 99999999999999999


Q ss_pred             EEEcCCCceEEEEECCC------------------CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          274 ATSSTKGTLVRIFNTLD------------------GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       274 ~~~~~dg~~i~vwd~~~------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      ++++.|+. |++||++.                  ++++..+   .|...|.+++|+|++++|++++.||.|++||+.++
T Consensus       162 ~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          162 AAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEEESSSC-EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             EEEeCCCE-EEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            99999999 99999853                  4455555   37789999999999999999999999999999988


Q ss_pred             CCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          336 SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                      +...                               ..+..+..|.+.|.+++|+|++++|++++.|+.+ +|+.+
T Consensus       238 ~~~~-------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          238 EQPP-------------------------------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             TSCE-------------------------------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCcc-------------------------------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            7411                               0022467888999999999999999998866665 77665

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-31  Score=241.65  Aligned_cols=241  Identities=10%  Similarity=0.150  Sum_probs=208.6

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~  197 (432)
                      ..+. +|...|.+++|++++..+++++.|     +.|++||+.+++.+..+. |...|.+++|+|++.++++   |+.|+
T Consensus        26 ~~l~-~h~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           26 IKLT-GHERPLTQVKYNKEGDLLFSCSKD-----SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK   99 (369)
T ss_dssp             EEEE-CCSSCEEEEEECTTSCEEEEEESS-----SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             EEEE-EeeceEEEEEEcCCCCEEEEEeCC-----CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            4555 799999999999999999999998     999999999999999998 9999999999999988884   89999


Q ss_pred             EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC-----CcEEEEEccCC------------ceeeeeccCC-
Q 014007          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-----GQVRVEHYASK------------RTKFIMAHDS-  259 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-----~~i~i~d~~~~------------~~~~~~~~~~-  259 (432)
                      +||+.+++.+..+. +...+..++|+|+++.++.+.   .+     +.|.+||+...            ....+..|.. 
T Consensus       100 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B          100 LWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAIL---DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             EEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEE---CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             EEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEec---CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            99999999988887 778899999999998665433   45     99999999863            2344556666 


Q ss_pred             -ceeEEEEcCCCCEEEEEcCCCceEEEEECCC-CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          260 -RIACFALTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       260 -~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                       .+.+++|+|++++|++++.||. |++||+++ ++.+..+..  |...|.+++|+|++++|++++.||.|++||+++++.
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGHKDGK-ISKYDVSNNYEYVDSIDL--HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEETTSE-EEEEETTTTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cceeEEEEcCCCCEEEEEcCCCE-EEEEECCCCcEeEEEEec--CCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence             8999999999999999999999 99999998 677877775  568999999999999999999999999999988762


Q ss_pred             CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCC--------------e
Q 014007          338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG--------------S  403 (432)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~  403 (432)
                                                         +..+. +...+..++|+|+++++++++.++              .
T Consensus       253 -----------------------------------~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  296 (369)
T 3zwl_B          253 -----------------------------------LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE  296 (369)
T ss_dssp             -----------------------------------EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CE
T ss_pred             -----------------------------------eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce
Confidence                                               12222 667899999999999999999998              7


Q ss_pred             EEEEEecC
Q 014007          404 FYRCQFDP  411 (432)
Q Consensus       404 v~iw~~~~  411 (432)
                      +++|++..
T Consensus       297 i~~~d~~~  304 (369)
T 3zwl_B          297 ARFYHKIF  304 (369)
T ss_dssp             EEEEETTT
T ss_pred             eEEEecCC
Confidence            88887643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1e-31  Score=247.42  Aligned_cols=238  Identities=15%  Similarity=0.115  Sum_probs=205.8

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc--eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEE
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYN  200 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d  200 (432)
                      .|...|.+++|++++..+++++.+     +.|++||+.+++  .+..+. |...|.+++|+|++.++++   |+.|++||
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCC-----CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            477889999999999999999888     999999999887  778887 9999999999999998884   89999999


Q ss_pred             cCCCeeeEEE--eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eee-eeccCCceeEEEEcCCCCEE
Q 014007          201 FADLKLLHQI--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKF-IMAHDSRIACFALTQDGQLL  273 (432)
Q Consensus       201 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~-~~~~~~~i~~~~~sp~~~~l  273 (432)
                      +.+++....+  ..+...+..++|+|+++.++.+   +.|+.|++||++...    ... ...|...|.+++|+|++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  157 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG---SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL  157 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEE---ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEE---eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence            9888755444  4577889999999998755433   379999999998854    233 35789999999999999999


Q ss_pred             EEEcCCCceEEEEEC------------------CCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          274 ATSSTKGTLVRIFNT------------------LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       274 ~~~~~dg~~i~vwd~------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      ++++.|+. |++||+                  ..++++..+..  |...|.+++|+|++++|++++.||.|++||++++
T Consensus       158 ~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          158 AAGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS--SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             EEEETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC--CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             EEEcCCCC-EEEEEcccccccccccccccccccchhhheEecCC--CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            99999999 999995                  36778777764  6689999999999999999999999999999987


Q ss_pred             CCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          336 SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +.                                   +..+..|...|.+++|+|++++|++| .||.|++|+++.
T Consensus       235 ~~-----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          235 MA-----------------------------------VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             TE-----------------------------------EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             ce-----------------------------------eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            62                                   44677888899999999999988877 899999999976

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.6e-31  Score=271.53  Aligned_cols=243  Identities=12%  Similarity=0.163  Sum_probs=205.5

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      .....|...|++++|+|++++|++|++++ |++|++.+++..  ..+. +|...|.+++|++++..+++++.|     +.
T Consensus        49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-----g~  120 (814)
T 3mkq_A           49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV--VDFE-AHPDYIRSIAVHPTKPYVLSGSDD-----LT  120 (814)
T ss_dssp             EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE--EEEE-CCSSCEEEEEECSSSSEEEEEETT-----SE
T ss_pred             EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--EEEe-cCCCCEEEEEEeCCCCEEEEEcCC-----CE
Confidence            45567999999999999999999998555 999999888766  4454 688999999999999999999998     99


Q ss_pred             EEEEeCCCC-ceeEEee-cCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEEeecc-CCcceEEEec--CCCc
Q 014007          158 VMIWDDHQS-RCIGELS-FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQ--GVGS  228 (432)
Q Consensus       158 v~iwd~~~~-~~~~~~~-~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~  228 (432)
                      |++||+.++ .....+. |...|.+++|+| ++..+++   |+.|++||+.+++....+..+. ..+..++|+|  ++..
T Consensus       121 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (814)
T 3mkq_A          121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY  200 (814)
T ss_dssp             EEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE
T ss_pred             EEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE
Confidence            999999887 5666666 899999999999 7777763   8999999999888777776554 7889999999  6553


Q ss_pred             EEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                        +++ ++.||.|++||+.++. ...+.+|...|.+++|+|++++|++++.||. |++||+.+++.+..+..  +...+.
T Consensus       201 --l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--~~~~v~  274 (814)
T 3mkq_A          201 --MIT-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNV--GLERSW  274 (814)
T ss_dssp             --EEE-ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECC--SSSSEE
T ss_pred             --EEE-EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeec--CCCcEE
Confidence              343 4489999999998754 5567789999999999999999999999999 99999999999988875  557999


Q ss_pred             EEEECCCCC--EEEEEeCCCeEEEEEecCCC
Q 014007          308 SLAFSSNAQ--WLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       308 ~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +++|+|+++  +++++ .++.+.+|++....
T Consensus       275 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          275 CIATHPTGRKNYIASG-FDNGFTVLSLGNDE  304 (814)
T ss_dssp             EEEECTTCGGGEEEEE-ETTEEEEEECSCCS
T ss_pred             EEEEccCCCceEEEEE-eCCCEEEEEcCCCC
Confidence            999999987  45555 57779999987654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-31  Score=248.23  Aligned_cols=264  Identities=12%  Similarity=0.122  Sum_probs=207.7

Q ss_pred             eecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCCCceeEEee---cCCceEEEEEec-CccEEEe---C
Q 014007          122 RDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRR-DRIIVVL---E  193 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~-~~~~~~~---d  193 (432)
                      ..+. +|...|.+++|++++ ..+++++.|     +.|++||+.+++....+.   |...|.+++|+| ++.++++   |
T Consensus        67 ~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           67 RTAS-PFDRRVTSLEWHPTHPTTVAVGSKG-----GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             EEEC-CCSSCEEEEEECSSCTTEEEEEEBT-----SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             Eecc-CCCCCEEEEEECCCCCCEEEEEcCC-----CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            3444 788999999999998 899999998     999999999888777765   899999999999 6677763   8


Q ss_pred             CeEEEEEcCCCeeeEEEeecc---CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCC
Q 014007          194 QKIFVYNFADLKLLHQIETIA---NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG  270 (432)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~  270 (432)
                      +.|++||++. ..+..+..+.   ..+.+++|+|+++.++.   ++.|+.|++||++...+..+..|...|.+++|+|++
T Consensus       141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~  216 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLAT---GDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRC  216 (383)
T ss_dssp             TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEE---EETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSC
T ss_pred             CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEE---ECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCC
Confidence            9999999985 5555554443   67889999999885443   348999999999888888899999999999999999


Q ss_pred             C-EEEEEcCCCceEEEEECCC----CceEEEEEeCCCcCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCCCCCCCCCC
Q 014007          271 Q-LLATSSTKGTLVRIFNTLD----GTLLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (432)
Q Consensus       271 ~-~l~~~~~dg~~i~vwd~~~----~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  344 (432)
                      + +|++++.|+. |++||+++    ++++..+.   |...|.+++|+| ++++|++++.|+.|++||+++++.......+
T Consensus       217 ~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  292 (383)
T 3ei3_B          217 DWLMATSSVDAT-VKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH  292 (383)
T ss_dssp             TTEEEEEETTSE-EEEEEGGGCCSTTCEEEEEE---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred             CCEEEEEeCCCE-EEEEeCCCCCcccceEEEec---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence            9 9999999999 99999998    66777774   778999999999 9999999999999999999998755433221


Q ss_pred             CCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          345 STSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                      .........                  .+...-.+.+.+..++|+|++++  +++.||.|++|++..  ++.+..++
T Consensus       293 ~~~~~~~~~------------------~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~--~~~~~~l~  347 (383)
T 3ei3_B          293 PHRQFQHLT------------------PIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS--GGLVHQLR  347 (383)
T ss_dssp             CBCCCTTSC------------------CCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT--CCEEEEEC
T ss_pred             ccccccccc------------------ceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC--Cceeeeec
Confidence            111000000                  00001112345667888999888  889999999998743  45555544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3e-32  Score=250.32  Aligned_cols=238  Identities=13%  Similarity=0.172  Sum_probs=199.5

Q ss_pred             CCCCCeEEEEEcCC----CCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCC
Q 014007           83 SPPPTLLHISFNQD----HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLN  156 (432)
Q Consensus        83 ~~~~~v~~~~~s~~----~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~  156 (432)
                      .|...|++++|+|+    +++|++|+.++ |++||+.+++..  ..+. +|...|.++.|++ ++..+++++.|     +
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~l~s~~~d-----g  138 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI--KHYV-GHGNAINELKFHPRDPNLLLSVSKD-----H  138 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE--EEEE-SCCSCEEEEEECSSCTTEEEEEETT-----S
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe--eeec-CCCCcEEEEEECCCCCCEEEEEeCC-----C
Confidence            37789999999999    66899888555 999999887765  4454 6899999999999 89999999998     9


Q ss_pred             eEEEEeCCCCceeEEe---e-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEee-----------------
Q 014007          157 KVMIWDDHQSRCIGEL---S-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIET-----------------  212 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~-----------------  212 (432)
                      .|++||+.+++.+..+   . |...|.+++|+|++.++++   |+.|++||+++++....+..                 
T Consensus       139 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (366)
T 3k26_A          139 ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQK  218 (366)
T ss_dssp             CEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEE
T ss_pred             eEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccccee
Confidence            9999999999998887   4 8999999999999988874   89999999998765443332                 


Q ss_pred             -----------ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc---------------eeeeeccCCceeEEEE
Q 014007          213 -----------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---------------TKFIMAHDSRIACFAL  266 (432)
Q Consensus       213 -----------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~---------------~~~~~~~~~~i~~~~~  266 (432)
                                 |...+.+++|+  ++  ++++ ++.|+.|++||++...               +..+..|...|.+++|
T Consensus       219 ~~~~~~~~~~~~~~~v~~~~~~--~~--~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  293 (366)
T 3k26_A          219 IHFPDFSTRDIHRNYVDCVRWL--GD--LILS-KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF  293 (366)
T ss_dssp             ECCCSEEECSSCSSCCCEEEEE--TT--EEEE-ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC
T ss_pred             eccCccccccCCcceEEEEEEc--CC--EEEE-EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE
Confidence                       77888899998  44  3343 4479999999988732               4556789999999999


Q ss_pred             cCC--CCEEEEEcCCCceEEEEECCCCc----eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          267 TQD--GQLLATSSTKGTLVRIFNTLDGT----LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       267 sp~--~~~l~~~~~dg~~i~vwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      +|+  +++|++++.||. |++||+.+++    ....+..+.+...|.+++|+|++++|++++.||.|++||+.+
T Consensus       294 s~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          294 SMDFWQKMLALGNQVGK-LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EECTTSSEEEEECTTSC-EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cCCCCCcEEEEEecCCc-EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            999  999999999999 9999999876    344666544478999999999999999999999999999863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.4e-32  Score=250.07  Aligned_cols=247  Identities=13%  Similarity=0.169  Sum_probs=204.6

Q ss_pred             ccCCCCCCCeEEEEEcCC----C---CEEEEEc-CCcEEEEEcCCCee---EEEeecccCc-----ceeEEEEeee----
Q 014007           79 STSSSPPPTLLHISFNQD----H---GCFAAGT-DHGFRIYNCDPFRE---IFRRDFERGG-----GIGVVEMLFR----  138 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~----~---~~l~~~~-~~~i~iw~~~~~~~---~~~~~~~~~~-----~~~v~~~~~~----  138 (432)
                      .....|...|++++|+|+    +   ++|++++ ++.|++|++.+.+.   .....+. .|     ...|.++.|+    
T Consensus        56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  134 (397)
T 1sq9_A           56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASND  134 (397)
T ss_dssp             EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC-
T ss_pred             eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccC
Confidence            445579999999999999    9   8999888 55599999976653   0013343 45     5899999999    


Q ss_pred             CCeEE-EecCCCCCCCCCCeEEEEeCCC------CceeE-----Ee-------e-cCCceEEEEEecCccEEEe---CCe
Q 014007          139 CNILA-LVGGGPDPQYPLNKVMIWDDHQ------SRCIG-----EL-------S-FRSEVRSVKLRRDRIIVVL---EQK  195 (432)
Q Consensus       139 ~~~~~-~~s~~~d~~~~~~~v~iwd~~~------~~~~~-----~~-------~-~~~~v~~~~~~~~~~~~~~---d~~  195 (432)
                      +++.. +++++.|     +.|++||+.+      ++.+.     .+       . |...|.+++|+|++ ++++   |+.
T Consensus       135 ~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~  208 (397)
T 1sq9_A          135 RLLSHRLVATDVK-----GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT  208 (397)
T ss_dssp             ---CEEEEEEETT-----SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE
T ss_pred             CCCceEEEEEeCC-----CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc
Confidence            99998 9999988     9999999988      66655     55       3 68899999999999 7663   899


Q ss_pred             EEEEEcCCCeeeEEEee---c---cCCcceEEEecCCCcEEEEeecCCC---CcEEEEEccCC-ceeeeec---------
Q 014007          196 IFVYNFADLKLLHQIET---I---ANPKGLCAVSQGVGSLVLVCPGLQK---GQVRVEHYASK-RTKFIMA---------  256 (432)
Q Consensus       196 i~i~d~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~i~d~~~~-~~~~~~~---------  256 (432)
                      |++||+++++.+..+..   |   ...+..++|+|+++.++.+   +.|   +.|++||+++. .+..+..         
T Consensus       209 i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~---~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~  285 (397)
T 1sq9_A          209 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA---HDSNSFGCITLYETEFGERIGSLSVPTHSSQASL  285 (397)
T ss_dssp             EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE---EEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred             EEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE---ecCCCCceEEEEECCCCcccceeccCcccccccc
Confidence            99999999999999988   8   8899999999998755432   367   99999999874 4556667         


Q ss_pred             ----cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEE------eC-------------CCcCceEEEEECC
Q 014007          257 ----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR------RG-------------ADRAEIYSLAFSS  313 (432)
Q Consensus       257 ----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~------~~-------------~~~~~i~~~~~s~  313 (432)
                          |...|.+++|+|++++|++++.|+. |++||+++++++..+.      .+             .|...|.+++|+|
T Consensus       286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~  364 (397)
T 1sq9_A          286 GEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK  364 (397)
T ss_dssp             CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred             cccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence                9999999999999999999999999 9999999999999998      42             0168999999999


Q ss_pred             CC----------CEEEEEeCCCeEEEEEecCCC
Q 014007          314 NA----------QWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       314 ~~----------~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      ++          ++|++++.||.|++||+.+++
T Consensus       365 ~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          365 KGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            98          799999999999999998763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-32  Score=257.74  Aligned_cols=295  Identities=11%  Similarity=0.095  Sum_probs=214.7

Q ss_pred             EEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCC---Cc
Q 014007           92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ---SR  167 (432)
Q Consensus        92 ~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~---~~  167 (432)
                      .|+|+++.++++.     .|+.. ++..  ..+..+|...|.+++|++ ++..+++++.|     +.|++||+.+   +.
T Consensus        34 ~f~~~~~~~~~~~-----~w~~~-g~~~--~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~  100 (437)
T 3gre_A           34 EFGPIQEIVRSPN-----MGNLR-GKLI--ATLMENEPNSITSSAVSPGETPYLITGSDQ-----GVIKIWNLKEIIVGE  100 (437)
T ss_dssp             GGCCCCCCCCCCC-----GGGCC-CCEE--EEECTTTTSCEEEEEEECSSSCEEEEEETT-----SEEEEEEHHHHHTTC
T ss_pred             hcCCccccccccc-----ccccc-ceEE--eeeccCCCCceEEEEECCCCCCEEEEecCC-----ceEEEeECcccccCc
Confidence            4788888777665     37633 3333  455337899999999999 99999999999     9999999876   33


Q ss_pred             ---eeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcC---CCeeeEEEeec------------cCCcceEEE--ec
Q 014007          168 ---CIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFA---DLKLLHQIETI------------ANPKGLCAV--SQ  224 (432)
Q Consensus       168 ---~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~---~~~~~~~~~~~------------~~~~~~~~~--~~  224 (432)
                         ....+.|...|.+++|+|++.++++   |+.|++||+.   +++.+..+..+            ...+.++.+  ++
T Consensus       101 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  180 (437)
T 3gre_A          101 VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE  180 (437)
T ss_dssp             CCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred             ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence               3455568999999999999988874   8999999995   45444433322            223333442  24


Q ss_pred             CCCcEEEEeecCCCCcEEEEEccCCc-eeeeec--cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC
Q 014007          225 GVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~  301 (432)
                      ++.  ++++ ++.|+.|++||+++.. +..+..  |...|++++|+|++++|++|+.||. |++||+++++++..+... 
T Consensus       181 ~~~--~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~-  255 (437)
T 3gre_A          181 EKS--LLVA-LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFNVLIRSWSFG-  255 (437)
T ss_dssp             SCE--EEEE-EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETTTTEEEEEEBCT-
T ss_pred             CCC--EEEE-EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcCCccEEEEEecC-
Confidence            444  4443 4489999999998854 456666  8999999999999999999999999 999999999999888633 


Q ss_pred             CcCceEEEEEC----CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC---CCCCCCceeEeecccceeecceeeE
Q 014007          302 DRAEIYSLAFS----SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP---TLPTSSLSFIKGVLPKYFSSEWSVA  374 (432)
Q Consensus       302 ~~~~i~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  374 (432)
                      |...|.+++|+    +++.+|++++.||.|++||+++++.+..+..+.....   ..+....      +.        -.
T Consensus       256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~--------~~  321 (437)
T 3gre_A          256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG------LE--------EL  321 (437)
T ss_dssp             TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS------GG--------GC
T ss_pred             CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccc------cc--------cc
Confidence            55789999555    5688999999999999999998875544433322111   0000000      00        00


Q ss_pred             EEEe--cCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          375 QFRL--VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       375 ~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                      .+.+  |.+.|++++|+ ++++|++|+.||.|++|++..  ++....+.
T Consensus       322 ~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~  367 (437)
T 3gre_A          322 NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE--LSSSKAVI  367 (437)
T ss_dssp             CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC--GGGCEEEE
T ss_pred             eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC--cccceEEe
Confidence            1233  77889999999 889999999999999999854  44444443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.5e-30  Score=236.63  Aligned_cols=255  Identities=9%  Similarity=0.114  Sum_probs=206.6

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCc-----eeEEee-cCCceEE
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELS-FRSEVRS  180 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~-----~~~~~~-~~~~v~~  180 (432)
                      +.++...+.+..+..+|+ +|...|.+++|+|+ +.+|++++.|     ++|++||+.+++     +...+. |...|.+
T Consensus        18 ~~~~~~~~~~~~l~~tL~-GH~~~V~~v~~sp~~~~~l~S~s~D-----~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~   91 (340)
T 4aow_A           18 LYFQSMMTEQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRD-----KTIIMWKLTRDETNYGIPQRALRGHSHFVSD   91 (340)
T ss_dssp             --------CEEEEEEEEC-CCSSCEEEEEECTTCTTEEEEEETT-----SCEEEEEECCSSSCSEEEEEEECCCSSCEEE
T ss_pred             EEEEEccCCceEEEEEEC-CccCCEEEEEEeCCCCCEEEEEcCC-----CeEEEEECCCCCcccceeeEEEeCCCCCEEE
Confidence            555565566666667787 89999999999997 5799999999     999999987653     455566 8999999


Q ss_pred             EEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce--eeee
Q 014007          181 VKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT--KFIM  255 (432)
Q Consensus       181 ~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~  255 (432)
                      ++|+|++.++++   |+.|++|+............+...+....++++++.++.   ++.|+.+++||......  ....
T Consensus        92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s---~s~d~~~~~~d~~~~~~~~~~~~  168 (340)
T 4aow_A           92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS---GSRDKTIKLWNTLGVCKYTVQDE  168 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE---EETTSCEEEECTTSCEEEEECSS
T ss_pred             EEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCcccee---ecCCCeEEEEEeCCCceEEEEec
Confidence            999999998884   899999999998888888878888888888998876543   34899999999987543  3356


Q ss_pred             ccCCceeEEEEcCCC--CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          256 AHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       256 ~~~~~i~~~~~sp~~--~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      +|...+.+++|++++  .++++++.|+. |++||+++++++..+..  |...|++++|+|++++|++|+.||.|++||++
T Consensus       169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~  245 (340)
T 4aow_A          169 SHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLANCKLKTNHIG--HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN  245 (340)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             cccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCCCceeeEecC--CCCcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence            789999999999864  57889999999 99999999999988875  66899999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          334 VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +.+.                                   +..+. +...|.+++|+|++.++ +++.||.|++|+++.
T Consensus       246 ~~~~-----------------------------------~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~  286 (340)
T 4aow_A          246 EGKH-----------------------------------LYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEG  286 (340)
T ss_dssp             TTEE-----------------------------------EEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTT
T ss_pred             cCce-----------------------------------eeeec-CCceEEeeecCCCCcee-eccCCCEEEEEECCC
Confidence            8762                                   22233 34579999999987654 567799999999753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.8e-31  Score=240.94  Aligned_cols=244  Identities=12%  Similarity=0.144  Sum_probs=200.1

Q ss_pred             CcceeEEEEeeeCCe-EEEecCCC---CCCCCCCeEEEEeCCCCceeEEe--ecCCceEEEEEecC---ccEEEe---CC
Q 014007          127 GGGIGVVEMLFRCNI-LALVGGGP---DPQYPLNKVMIWDDHQSRCIGEL--SFRSEVRSVKLRRD---RIIVVL---EQ  194 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~-~~~~s~~~---d~~~~~~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~---~~~~~~---d~  194 (432)
                      +|...|.+++|+|++ .++++++.   |     +.|++||+.+++.....  .|...|.+++|+|+   +.++++   |+
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGT-----GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCC-----EEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCC-----cEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            689999999999987 56666665   7     99999999998765443  48999999999998   576663   89


Q ss_pred             eEEEEEcCCCe-eeEEEeeccCCcceEEE------ecCCCcEEEEeecCCCCcEEEEEccCCc--eeeeeccCC----ce
Q 014007          195 KIFVYNFADLK-LLHQIETIANPKGLCAV------SQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDS----RI  261 (432)
Q Consensus       195 ~i~i~d~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~----~i  261 (432)
                      .|++||+.+++ .+..+..|...+..+.+      +++++.+  ++ ++.|+.|++||++...  ...+..|..    .+
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l--~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEI--VT-GSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEE--EE-EETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEE--EE-EeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            99999999887 88888899999998855      5666644  33 3489999999999853  556655544    78


Q ss_pred             eEEE----EcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC---CCCEEEEEeCCCeEEEEEecC
Q 014007          262 ACFA----LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS---NAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       262 ~~~~----~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      .+++    |+|++++|++++.|+. |++||+++++......   |...|.+++|+|   ++.+|++++.||.|++||+++
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCAGYDNGD-IKLFDLRNMALRWETN---IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             EEEEEECCCC-CCCEEEEEETTSE-EEEEETTTTEEEEEEE---CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             EEEEEEeccCCCCCEEEEEccCCe-EEEEECccCceeeecC---CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence            9998    7899999999999999 9999999998866554   668999999999   999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC-EEEEEecCCeEEEEEecCC
Q 014007          335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~  412 (432)
                      ++.....                              ....+..|.+.|.+++|+|+++ +|++++.||.|++|+++..
T Consensus       244 ~~~~~~~------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          244 QHPTKGF------------------------------ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             EETTTEE------------------------------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred             CCcccce------------------------------eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence            7643211                              1224568999999999999998 8999999999999999753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.5e-31  Score=262.01  Aligned_cols=241  Identities=12%  Similarity=0.139  Sum_probs=203.8

Q ss_pred             eecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCCC-----ceeEEee-cCCceEEEEEecCccEEEe--
Q 014007          122 RDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQS-----RCIGELS-FRSEVRSVKLRRDRIIVVL--  192 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~~-----~~~~~~~-~~~~v~~~~~~~~~~~~~~--  192 (432)
                      ..+. +|...|.++++++++ ..+++++.|     ++|++||+.+.     .....+. |...|.+++|+|++.++++  
T Consensus       376 ~~l~-~H~~~V~~v~~~~~~~~~l~s~s~D-----~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs  449 (694)
T 3dm0_A          376 GTMR-AHTDMVTAIATPIDNADIIVSASRD-----KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS  449 (694)
T ss_dssp             EEEE-CCSSCEEEEECCTTCCSEEEEEETT-----SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             hhcc-cCCceeEEEEecCCCCCEEEEEeCC-----CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence            3454 799999999999764 789999999     99999998764     3345566 9999999999999998884  


Q ss_pred             -CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee----eccCCceeEEEEc
Q 014007          193 -EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI----MAHDSRIACFALT  267 (432)
Q Consensus       193 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~----~~~~~~i~~~~~s  267 (432)
                       |++|++||+.+++.+..+..|...|.+++|+|+++.++.   ++.|+.|++||........+    .+|...|.+++|+
T Consensus       450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s---~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  526 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS---ASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS  526 (694)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE---EETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred             CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEE---EeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence             899999999999999999999999999999999986542   34899999999877544433    4688999999999


Q ss_pred             CCC--CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCC
Q 014007          268 QDG--QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS  345 (432)
Q Consensus       268 p~~--~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  345 (432)
                      |++  .+|++++.|+. |++||++++++...+..  |...|++++|+|++++|++++.||.|++||+.+++.+.      
T Consensus       527 ~~~~~~~l~s~s~d~~-v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~------  597 (694)
T 3dm0_A          527 PNTLQPTIVSASWDKT-VKVWNLSNCKLRSTLAG--HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY------  597 (694)
T ss_dssp             SCSSSCEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE------
T ss_pred             CCCCcceEEEEeCCCe-EEEEECCCCcEEEEEcC--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE------
Confidence            987  58999999999 99999999999888875  66899999999999999999999999999999876321      


Q ss_pred             CCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                                   .+ .+...|.+++|+|++.+|++++ |+.|+||++..
T Consensus       598 -----------------------------~~-~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~  632 (694)
T 3dm0_A          598 -----------------------------SL-EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLES  632 (694)
T ss_dssp             -----------------------------CC-BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT
T ss_pred             -----------------------------Ee-cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC
Confidence                                         11 1335689999999998887765 56699999854

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.5e-29  Score=234.79  Aligned_cols=262  Identities=15%  Similarity=0.115  Sum_probs=211.6

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (432)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~  175 (432)
                      .++++++ ++.|++||+.+++..  ..+.  +...+.+++|++++..+ ++++.+     +.|++||+.+++.+..+.+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~--~~~~--~~~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~   73 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVT--ATIP--VGSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAG   73 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEE--EEEE--CSSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEE--EEee--cCCCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEEEECC
Confidence            3566676 555999999888765  4444  33458999999999765 677677     99999999999999999877


Q ss_pred             CceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007          176 SEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (432)
Q Consensus       176 ~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~  251 (432)
                      ..+.+++|+|++.+++ +   ++.|++||+.+++.+..+..+ ..+..++|+|+++.++++  +..++.|++||+.++..
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVT--NNGDKTVSVINTVTKAV  150 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEE--ETTTTEEEEEETTTTEE
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEE--eCCCCEEEEEECCCCcE
Confidence            7999999999998775 2   689999999999988887654 456789999999876554  35789999999988665


Q ss_pred             eeeeccCCceeEEEEcCCCCEE-EEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe---CCCeE
Q 014007          252 KFIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTV  327 (432)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l-~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i  327 (432)
                      .....+...+.+++|+|++++| ++++.++. |++||+++++.+..+.   +...+.+++|+|+|++|++++   .++.|
T Consensus       151 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v  226 (391)
T 1l0q_A          151 INTVSVGRSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTV  226 (391)
T ss_dssp             EEEEECCSSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred             EEEEecCCCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcE
Confidence            5444445667999999999887 57788898 9999999999888887   446899999999999999888   68999


Q ss_pred             EEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEE-EEEecCCeEEE
Q 014007          328 HVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTV-VILGMDGSFYR  406 (432)
Q Consensus       328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~i  406 (432)
                      ++||+.+++.                                   +..+..|. .+..++|+|++++| ++++.|+.|++
T Consensus       227 ~~~d~~~~~~-----------------------------------~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v  270 (391)
T 1l0q_A          227 SMIDTGTNKI-----------------------------------TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSV  270 (391)
T ss_dssp             EEEETTTTEE-----------------------------------EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEECCCCeE-----------------------------------EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEE
Confidence            9999988752                                   22344444 47899999999987 56688999999


Q ss_pred             EEecC
Q 014007          407 CQFDP  411 (432)
Q Consensus       407 w~~~~  411 (432)
                      |++..
T Consensus       271 ~d~~~  275 (391)
T 1l0q_A          271 IDTAT  275 (391)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            98753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.6e-30  Score=230.57  Aligned_cols=243  Identities=12%  Similarity=0.162  Sum_probs=205.4

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      ...|...|++++|+|++++|++|+. +.|+||++.+++..  ..+. +|...+..+.+.+  ..+++++.+     +.++
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~--~~~~-~h~~~~~~~~~~~--~~l~s~~~~-----~~~~  132 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--RNMT-SHSARVGSLSWNS--YILSSGSRS-----GHIH  132 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEET--TEEEEEETT-----SEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE--EEec-CccceEEEeecCC--CEEEEEecC-----CceE
Confidence            4578889999999999999999985 55999999988766  4454 6777787776665  467777777     9999


Q ss_pred             EEeCCCCc-eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCee----eEEEeeccCCcceEEEecCCCcEE
Q 014007          160 IWDDHQSR-CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKL----LHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       160 iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      +|+...+. .+..+. |...+..+.+.+++.++++   |+.|++||+++++.    ......+...+..+.+.+++..++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  212 (318)
T 4ggc_A          133 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL  212 (318)
T ss_dssp             EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEE
T ss_pred             eeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEE
Confidence            99988764 445555 8999999999999998884   89999999987653    344455677888999999988887


Q ss_pred             EEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc--CCCceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  308 (432)
                      ...+++.++.|++||...........+...+..+.|+|++..+++++  .|+. |++||+++++++.++.+  |...|++
T Consensus       213 ~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~-i~iwd~~~~~~~~~l~g--H~~~V~~  289 (318)
T 4ggc_A          213 ATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLS  289 (318)
T ss_dssp             EEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred             EEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCE-EEEEECCCCcEEEEEcC--CCCCEEE
Confidence            77678899999999999988877788899999999999999887654  7899 99999999999999985  6789999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       309 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      ++|+|+|++|++|+.||+|+|||+.+..
T Consensus       290 l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          290 LTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            9999999999999999999999997653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.6e-31  Score=249.39  Aligned_cols=236  Identities=11%  Similarity=0.184  Sum_probs=190.5

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-----------eeEEee-cC------------CceEEEEE
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----------CIGELS-FR------------SEVRSVKL  183 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-----------~~~~~~-~~------------~~v~~~~~  183 (432)
                      +...|.+++|++++.+|++++.|     |.|++||+.+++           ....+. |.            ..|.+++|
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKG-----GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW  101 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETT-----SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCC-----CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence            67899999999999999999999     999999998876           466666 77            88999999


Q ss_pred             ecCc--cEEE---eCCeEEEEEcCCCeee---------------------------------------EE-EeeccCCcc
Q 014007          184 RRDR--IIVV---LEQKIFVYNFADLKLL---------------------------------------HQ-IETIANPKG  218 (432)
Q Consensus       184 ~~~~--~~~~---~d~~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~~~  218 (432)
                      +|++  ..++   .|+.|++||+.+++..                                       .. ...|...+.
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            9997  4555   3999999998764432                                       12 246888999


Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccC-Cce-e-------eeeccCCceeEEEEcCCC-CEEEEEcCCCceEEEEEC
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRT-K-------FIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNT  288 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~-~-------~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~  288 (432)
                      .++|+|+++.+  ++ | .|+.|++||++. ... .       .+.+|...|.+++|+|++ ++|++|+.|+. |++||+
T Consensus       182 ~~~~~~~~~~l--~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~  256 (447)
T 3dw8_B          182 SISINSDYETY--LS-A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDM  256 (447)
T ss_dssp             EEEECTTSSEE--EE-E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEET
T ss_pred             EEEEcCCCCEE--EE-e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEEC
Confidence            99999998744  43 4 699999999984 322 2       255899999999999998 99999999999 999999


Q ss_pred             CCCce----EEEEEeCCCcC------------ceEEEEECCCCCEEEEEeCCCeEEEEEecC-CCCCCCCCCCCCCCCCC
Q 014007          289 LDGTL----LQEVRRGADRA------------EIYSLAFSSNAQWLAVSSDKGTVHVFNLKV-NSGSARSEPRSTSDPTL  351 (432)
Q Consensus       289 ~~~~~----~~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~  351 (432)
                      ++++.    +..+..  |..            .|.+++|+|+|++|++++. +.|++||+++ ++.+.            
T Consensus       257 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~------------  321 (447)
T 3dw8_B          257 RASALCDRHSKLFEE--PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE------------  321 (447)
T ss_dssp             TTCSSSCTTCEEECC--C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC------------
T ss_pred             cCCccccceeeEecc--CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc------------
Confidence            99887    677764  333            8999999999999999998 9999999987 55332            


Q ss_pred             CCCCceeEeecccceeecceeeEEEEecCCC---------------ceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          352 PTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS---------------PYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                             .+..|...               +..++|+|++++|++|+.||.|++|++..
T Consensus       322 -----------------------~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          322 -----------------------TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             -----------------------CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred             -----------------------eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence                                   23334321               23499999999999999999999999854

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-32  Score=257.05  Aligned_cols=229  Identities=14%  Similarity=0.096  Sum_probs=178.7

Q ss_pred             eCCeEEEecCCCCCCCCCCeEEEEeCCCCcee----EEee-cCCceEEEEEecC------ccEEEe---CCeEEEEEcCC
Q 014007          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCI----GELS-FRSEVRSVKLRRD------RIIVVL---EQKIFVYNFAD  203 (432)
Q Consensus       138 ~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~----~~~~-~~~~v~~~~~~~~------~~~~~~---d~~i~i~d~~~  203 (432)
                      ++++..+++++.|     ++|+|||+.+++..    ..+. |.+.|.+++|+|+      +.++++   |++|++||+.+
T Consensus       170 ~~~~~~laS~s~D-----~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~  244 (524)
T 2j04_B          170 NEHLEMFDKEKHS-----SCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIID  244 (524)
T ss_dssp             ------------C-----EEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCC
T ss_pred             chhhhhhccCCCC-----ceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCC
Confidence            3455566777788     99999999877642    3345 6788999999996      456663   99999999986


Q ss_pred             Cee-----------eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ceeeeeccCCceeEE--EEcC
Q 014007          204 LKL-----------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACF--ALTQ  268 (432)
Q Consensus       204 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~--~~sp  268 (432)
                      ++.           ...+..|...+.+++|++++   .+++ |+.||.|++||++++  ....+.+|...|.+|  +|+|
T Consensus       245 ~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---~las-gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~  320 (524)
T 2j04_B          245 NATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---TVVC-GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD  320 (524)
T ss_dssp             CSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS---EEEE-EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT
T ss_pred             CccccccceeecCceEEEEcCCCCEEEEEecCCC---eEEE-EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC
Confidence            532           23567788899999999753   3443 558999999999864  334578999999999  6788


Q ss_pred             CC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCC
Q 014007          269 DG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTS  347 (432)
Q Consensus       269 ~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  347 (432)
                      +| ++|++|+.|++ |+|||+++++++..+.++.....|.+++|+|+++.|++++.|++|++||++++..          
T Consensus       321 ~g~~~laS~S~D~t-vklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~----------  389 (524)
T 2j04_B          321 FEDTVVSTVAVDGY-FYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA----------  389 (524)
T ss_dssp             TSCCEEEEEETTSE-EEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC----------
T ss_pred             CCCeEEEEeccCCe-EEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc----------
Confidence            88 89999999999 9999999988877777543223588999999999999999999999999988763          


Q ss_pred             CCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          348 DPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                               +..+.+|.+.|++|+|+|+|++|++|+.||+|++|++..
T Consensus       390 -------------------------~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          390 -------------------------VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             -------------------------CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             -------------------------ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence                                     235778999999999999999999999999999998643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=5.8e-30  Score=224.40  Aligned_cols=274  Identities=10%  Similarity=0.114  Sum_probs=187.4

Q ss_pred             CeEEEEEcCCCC---EEEEEcCCcEEEEEcCCC---eeEEEeecccCcceeEEEEeeeCC---eEEEecCCCCCCCCCCe
Q 014007           87 TLLHISFNQDHG---CFAAGTDHGFRIYNCDPF---REIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNK  157 (432)
Q Consensus        87 ~v~~~~~s~~~~---~l~~~~~~~i~iw~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~~~~~~  157 (432)
                      .+.++.|-.-|-   .++++++..|++|+....   ++.  ..+. .|...|..+.+.|+   ..+++-|.-.    -+.
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~  113 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKL--YTWH-FAEVPVLQIVPVPDVYNLVCVALGNLE----IRE  113 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEE--EEEE-CCSSCEEEECCCTTCCSCEEEEECSSS----EEE
T ss_pred             EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceee--EEEe-ccCceeEEEEEcCcccceeeeeecccc----ccc
Confidence            466777765544   788888999999999776   444  4454 57888888888883   1222222211    011


Q ss_pred             EEEEeCCC-----CceeEEeecCCceEEEEEecCccEEEe-----CCeEEEEEc-CCCeeeEEEeeccCCcceEEEec-C
Q 014007          158 VMIWDDHQ-----SRCIGELSFRSEVRSVKLRRDRIIVVL-----EQKIFVYNF-ADLKLLHQIETIANPKGLCAVSQ-G  225 (432)
Q Consensus       158 v~iwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~-----d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~-~  225 (432)
                      |+..-+..     ++.+..-.+...|.++   ++++++.+     |+.|++|++ .+++.+..+..|...+..++|++ +
T Consensus       114 v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~  190 (356)
T 2w18_A          114 IRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ  190 (356)
T ss_dssp             EEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred             eEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence            11111111     1111111123333333   57777764     889999999 45888888889999999999999 5


Q ss_pred             CCcEEEEeecCCCCcEEEEEccCCc-eeeeeccC---CceeEEEEcCCCCEE------------EEEcCCCceEEEEECC
Q 014007          226 VGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHD---SRIACFALTQDGQLL------------ATSSTKGTLVRIFNTL  289 (432)
Q Consensus       226 ~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~---~~i~~~~~sp~~~~l------------~~~~~dg~~i~vwd~~  289 (432)
                      |+..++++ |+.|++|+|||+++++ ++++.+|.   ..+.+++|+|+|.++            ++|+.|++ |++||..
T Consensus       191 g~~~~LaS-gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~  268 (356)
T 2w18_A          191 GMQEALLG-TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPK  268 (356)
T ss_dssp             TSTTEEEE-EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETT
T ss_pred             CCCceEEE-ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECC
Confidence            55556665 4589999999999864 56676554   367788999999886            56788999 9999999


Q ss_pred             CCceEEEEEe---CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccce
Q 014007          290 DGTLLQEVRR---GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKY  366 (432)
Q Consensus       290 ~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (432)
                      +++++..+..   ..|...+.+..+  ++.++++++.|++|+|||+.+++.                             
T Consensus       269 tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~-----------------------------  317 (356)
T 2w18_A          269 TTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQC-----------------------------  317 (356)
T ss_dssp             TTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSE-----------------------------
T ss_pred             CCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcE-----------------------------
Confidence            9998876631   124444544444  378999999999999999999873                             


Q ss_pred             eecceeeEEEEecCCCce-EEEEccCCCEEEEEecCCeEEEEEe
Q 014007          367 FSSEWSVAQFRLVEGSPY-IVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                            +.++++|.+.+. .++|+|||++|++|+.|++|+||++
T Consensus       318 ------l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          318 ------TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ------EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             ------EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence                  456777876554 6899999999999999999999986

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.6e-30  Score=236.64  Aligned_cols=242  Identities=10%  Similarity=0.052  Sum_probs=196.3

Q ss_pred             cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc----eeEEeecCCceEEEEEecCcc-EEEe---CCeEE
Q 014007          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELSFRSEVRSVKLRRDRI-IVVL---EQKIF  197 (432)
Q Consensus       126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~~---d~~i~  197 (432)
                      .+|...|.+++|++++..+++++.|     +.|++||+.+++    ......|...|.+++|+|++. ++++   |+.|+
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCC-----CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            3688999999999999999999988     999999998877    444445999999999999998 7773   89999


Q ss_pred             EEEc-CCCeeeEEEee--ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC---------CceeeeeccCCceeEEE
Q 014007          198 VYNF-ADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---------KRTKFIMAHDSRIACFA  265 (432)
Q Consensus       198 i~d~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---------~~~~~~~~~~~~i~~~~  265 (432)
                      +||+ .+++. ..+..  |...+..++|++ ++.++  + ++.|+.|++||++.         ........|...|.+++
T Consensus        83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~--s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  157 (342)
T 1yfq_A           83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLI--A-ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             EECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEE--E-EETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             EEEeccCCce-EeccccCCCCceEEEEeCC-CCEEE--E-EcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEE
Confidence            9999 77654 66777  889999999999 65433  2 34899999999986         54333334899999999


Q ss_pred             EcCCCCEEEEEcCCCceEEEEECCC-CceEEEEEeCCCcCceEEEEECC-CCCEEEEEeCCCeEEEEEecCC--CCCCCC
Q 014007          266 LTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVN--SGSARS  341 (432)
Q Consensus       266 ~sp~~~~l~~~~~dg~~i~vwd~~~-~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~--~~~~~~  341 (432)
                      |+|++  |++++.|+. |++||+++ +..........+...+.+++|+| ++++|++++.||.|++|+++..  ..... 
T Consensus       158 ~~~~~--l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-  233 (342)
T 1yfq_A          158 TNSSR--LIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS-  233 (342)
T ss_dssp             ECSSE--EEEEESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT-
T ss_pred             ecCCc--EEEEeCCCe-EEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc-
Confidence            99987  899999999 99999998 65432223234678999999999 9999999999999999999876  10000 


Q ss_pred             CCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC---------CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          342 EPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE---------GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                                    ....++.|.         ..|.+++|+|++++|++++.||.|++|++..
T Consensus       234 ------------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          234 ------------------------------KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             ------------------------------TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             ------------------------------cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence                                          023455554         3899999999999999999999999999743

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=1.1e-30  Score=243.38  Aligned_cols=249  Identities=11%  Similarity=0.125  Sum_probs=204.0

Q ss_pred             ccCCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEcCCCee-----EEEeecccCcceeEEEEeeeCCe-EEEecCCCC
Q 014007           79 STSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNI-LALVGGGPD  150 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~-i~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d  150 (432)
                      ....+|.+.|++++|+| ++++|++|+.++ |+||++.+...     .....+. +|...|.++.|++++ ..+++++.|
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCC
Confidence            45678999999999999 899999998555 99999987632     1124454 688999999999998 689999988


Q ss_pred             CCCCCCeEEEEeCCCCceeEEe--e-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEE-eeccCC-cceEEE
Q 014007          151 PQYPLNKVMIWDDHQSRCIGEL--S-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQI-ETIANP-KGLCAV  222 (432)
Q Consensus       151 ~~~~~~~v~iwd~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~~-~~~~~~  222 (432)
                           +.|++||+.+++.+..+  . |...|.+++|+|++.++++   |+.|++||+++++.+..+ ..|... +..+.|
T Consensus       154 -----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (402)
T 2aq5_A          154 -----NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF  228 (402)
T ss_dssp             -----SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred             -----CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence                 99999999999999998  5 8999999999999988873   899999999999998888 566665 788999


Q ss_pred             ecCCCcEEEEeecCCCCcEEEEEccCCce--eee-eccCCceeEEEEcCCCCEEE-EEcCCCceEEEEECCCCce-EEEE
Q 014007          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRT--KFI-MAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGTL-LQEV  297 (432)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~-~~~~~~i~~~~~sp~~~~l~-~~~~dg~~i~vwd~~~~~~-~~~~  297 (432)
                      ++++..++.+..++.|+.|++||++....  ... ..|...+.+++|+|++++|+ +|+.|+. |++||+.+++. +..+
T Consensus       229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~~~~l  307 (402)
T 2aq5_A          229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPFLHYL  307 (402)
T ss_dssp             CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTCEEEE
T ss_pred             cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcceEee
Confidence            99876443321115899999999988432  222 35778899999999999986 5567999 99999999884 6666


Q ss_pred             EeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       298 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      ..+.+...|.+++|+|++.++++  .++.+++|++.+++
T Consensus       308 ~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          308 SMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             EEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             cccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            65446689999999999998765  56799999998865

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.8e-31  Score=265.31  Aligned_cols=244  Identities=12%  Similarity=0.150  Sum_probs=204.4

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC--CCceeEEee-cCCceEEEEEecC--ccEEEe---CCeEEE
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFV  198 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i  198 (432)
                      +|...|.+++|++++..+++++.|     |.|++||+.  +++.+..+. |.+.|.+++|+++  +.++++   ||.|++
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            799999999999999999999999     999999987  456677777 9999999999987  877773   899999


Q ss_pred             EEcCCCe--eeEEEeeccCCcceEEEecC--CCcEEEEeecCCCCcEEEEEccCC---ceeeeeccCCceeEEEEcC---
Q 014007          199 YNFADLK--LLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQ---  268 (432)
Q Consensus       199 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~~i~~~~~sp---  268 (432)
                      ||+.+++  .+..+..|...+.+++|+|+  ++.+  ++ |+.||.|++||++..   ....+.+|...|.+++|+|   
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l--~s-gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL--LV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE--EE-EETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEE--EE-EeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence            9999986  67777788999999999999  6544  33 348999999999885   3455678999999999999   


Q ss_pred             ----------CCCEEEEEcCCCceEEEEECCCCc----eEEEEEeCCCcCceEEEEECCC---CCEEEEEeCCCeEEEEE
Q 014007          269 ----------DGQLLATSSTKGTLVRIFNTLDGT----LLQEVRRGADRAEIYSLAFSSN---AQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       269 ----------~~~~l~~~~~dg~~i~vwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd  331 (432)
                                ++.+|++|+.||. |++||++++.    +...+.  .|...|++++|+|+   +++|++++.||.|++||
T Consensus       159 ~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             --------CGGGCCEEEEETTSC-EEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             ccccccccCCCCCEEEEEECCCe-EEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                      5899999999999 9999998873    444444  36789999999999   89999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      +.+++......                              +.....|.+.|++++|+|+|++|++|+.||.|++|+++.
T Consensus       236 ~~~~~~~~~~~------------------------------~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          236 QDNEQGPWKKT------------------------------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             ESSSSSCCBCC------------------------------BSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CCCCCCcceeE------------------------------EeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            99875211000                              011234677899999999999999999999999999874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.1e-29  Score=228.03  Aligned_cols=236  Identities=11%  Similarity=0.130  Sum_probs=200.3

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~  197 (432)
                      ..+. +|...|.+++| +++..+++++.|     |.|++||+.+++....+. |...|.+++|+|++.++++   |+.|+
T Consensus        12 ~~l~-~h~~~v~~~~~-~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A           12 ATLK-GHDQDVRDVVA-VDDSKVASVSRD-----GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             EEEC-CCSSCEEEEEE-EETTEEEEEETT-----SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             HHhh-CCCCCcEEEEe-cCCCEEEEEEcC-----CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            5565 79999999999 888889999998     999999999988888887 8999999999999998884   89999


Q ss_pred             EEEcCCC---eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcC-CCCEE
Q 014007          198 VYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLL  273 (432)
Q Consensus       198 i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp-~~~~l  273 (432)
                      +|++...   +.+..+..|...+..+.+  +++.+  ++ ++.|+.|++|| .......+..|...+.++.|+| ++++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l--~~-~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVV--IS-GSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEE--EE-EETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEe--cCCEE--EE-EeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEE
Confidence            9998764   557777888888888888  44433  33 34899999999 5556677888999999999998 99999


Q ss_pred             EEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007          274 ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT  353 (432)
Q Consensus       274 ~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  353 (432)
                      ++++.|+. |++||  ..+....+... +...+.+++|+|++. |++++.||.|++||+++++.                
T Consensus       159 ~~~~~d~~-i~i~d--~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~----------------  217 (313)
T 3odt_A          159 LTASADKT-IKLWQ--NDKVIKTFSGI-HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV----------------  217 (313)
T ss_dssp             EEEETTSC-EEEEE--TTEEEEEECSS-CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE----------------
T ss_pred             EEEECCCC-EEEEe--cCceEEEEecc-CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh----------------
Confidence            99999999 99999  55666666642 668999999999998 88999999999999988762                


Q ss_pred             CCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                         +..+..|.+.|.+++|+|++ .|++++.||.|++|++..
T Consensus       218 -------------------~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~  255 (313)
T 3odt_A          218 -------------------LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN  255 (313)
T ss_dssp             -------------------EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT
T ss_pred             -------------------hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCC
Confidence                               44677899999999999999 689999999999998744

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.9e-30  Score=236.41  Aligned_cols=261  Identities=9%  Similarity=0.067  Sum_probs=198.3

Q ss_pred             EEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC------
Q 014007           92 SFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------  164 (432)
Q Consensus        92 ~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~------  164 (432)
                      .+.+++.+|++|+ |+.|++||+.+++....  +.   ...+..+.++++   +++++.|     ++|++|+..      
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~--~~---~~~v~~~~~~~~---~~s~s~D-----~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITT--IT---TPNPRTGGEHPA---IISRGPC-----NRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEE--EE---EECCCTTCCCCS---EEEECST-----TEEEEEETTTEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEE--Ee---cCCceeeeeCCc---eEEecCC-----CeEEEEEccCceEEe
Confidence            4456788899998 55599999988776532  31   345667778887   8888888     999999655      


Q ss_pred             ---CCceeEEee--cCCceEEEEEec--CccEEEe---CCeEEEEEcCCCeeeEEEee-ccCCcceEEEecCCCcEEEEe
Q 014007          165 ---QSRCIGELS--FRSEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       165 ---~~~~~~~~~--~~~~v~~~~~~~--~~~~~~~---d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  233 (432)
                         +++.+..+.  |...|.+++|+|  ++.++++   |+.|++||+++++.+..... +...+.+++|+|++..+  ++
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~l--as  187 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLL--AL  187 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEE--EE
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEE--EE
Confidence               455455555  668899999999  9988883   89999999999988666533 44578899999998743  43


Q ss_pred             ecCCCCcEEEEEccCCce--eeeec-cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC-CCcCce--E
Q 014007          234 PGLQKGQVRVEHYASKRT--KFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEI--Y  307 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~~~~--~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i--~  307 (432)
                       |+.||.|++||++++..  ..+.. |...|.+++|+|+|.+|++++. +. |++||+++++.+..+... .+...+  .
T Consensus       188 -g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (343)
T 3lrv_A          188 -YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QT-VVCFDLRKDVGTLAYPTYTIPEFKTGTV  264 (343)
T ss_dssp             -ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SB-EEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred             -EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-Ce-EEEEEcCCCCcceeecccccccccccce
Confidence             45899999999998654  46777 9999999999999999999994 48 999999998776544320 011222  4


Q ss_pred             EEEECCCCCEEEEEeC-CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE
Q 014007          308 SLAFSSNAQWLAVSSD-KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV  386 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  386 (432)
                      +++|+|+|++|++++. |+.|+||++.+....                                |..       ..+..+
T Consensus       265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--------------------------------~~~-------~~~~~~  305 (343)
T 3lrv_A          265 TYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--------------------------------WTK-------DEESAL  305 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCS--------------------------------EEE-------EEEEEC
T ss_pred             EEEECCCCCEEEEecCCCCcEEEEEEcccccc--------------------------------eEe-------cCceeE
Confidence            6999999999999998 999999999766421                                111       246678


Q ss_pred             EEcc---CCCEEEEEecCCeEEEEEe
Q 014007          387 AFGH---QKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       387 ~~s~---~~~~l~~~~~dg~v~iw~~  409 (432)
                      +|++   +.+.|++++.||.+.++-.
T Consensus       306 ~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          306 CLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             CC----CCCCEEEEEEETTEEEEEEE
T ss_pred             ecCccccccceeEEEecCCceEEEEe
Confidence            8888   8889999999999998754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6e-31  Score=263.86  Aligned_cols=248  Identities=15%  Similarity=0.160  Sum_probs=202.2

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC--eEEEecCCCCCCCCC
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPL  155 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~  155 (432)
                      .+..+|.+.|++++|+|+|++|++|+.+ .|+||++..........+. +|...|.++.|+++  +..+++++.|     
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~D-----   76 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYD-----   76 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETT-----
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCC-----
Confidence            4568899999999999999999999854 4999999866555556665 78999999999987  8999999999     


Q ss_pred             CeEEEEeCCCCc--eeEEee-cCCceEEEEEecC--ccEEEe---CCeEEEEEcCCCe--eeEEEeeccCCcceEEEecC
Q 014007          156 NKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQG  225 (432)
Q Consensus       156 ~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~  225 (432)
                      |.|++||+.+++  .+..+. |...|.+++|+|+  +.++++   ||.|++||++++.  ....+..|...+.+++|+|.
T Consensus        77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred             CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence            999999999886  555666 8999999999998  877773   8999999998863  34556778889999999994


Q ss_pred             -------------CCcEEEEeecCCCCcEEEEEccCCc-----eeeeeccCCceeEEEEcCC---CCEEEEEcCCCceEE
Q 014007          226 -------------VGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQD---GQLLATSSTKGTLVR  284 (432)
Q Consensus       226 -------------~~~~~~~~~g~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~~~~sp~---~~~l~~~~~dg~~i~  284 (432)
                                   +..++  + |+.||.|++||++...     ...+.+|...|.+++|+|+   +++|++++.||. |+
T Consensus       157 ~~~~~~~~~~~~d~~~l~--s-gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~  232 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFV--T-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CI  232 (753)
T ss_dssp             C---------CGGGCCEE--E-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EE
T ss_pred             ccccccccccCCCCCEEE--E-EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EE
Confidence                         55443  2 3479999999998742     3456789999999999999   999999999999 99


Q ss_pred             EEECCCCceE---EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          285 IFNTLDGTLL---QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       285 vwd~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +||+++++..   .......|...|++++|+|+|++|++++.||.|++||+....
T Consensus       233 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            9999886421   111222366889999999999999999999999999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.5e-30  Score=243.04  Aligned_cols=247  Identities=12%  Similarity=0.161  Sum_probs=202.4

Q ss_pred             ccCCCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEcCCC--------eeEEEeecccCcceeEEEEeeeCCeE-EEecC
Q 014007           79 STSSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPF--------REIFRRDFERGGGIGVVEMLFRCNIL-ALVGG  147 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~-i~iw~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~  147 (432)
                      .....|.+.|++++|+|+ +.+|++++.++ |++|++...        .......+. +|...+.+++|++++. .++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEE
Confidence            445678999999999997 67889988555 999999751        122224444 6888999999999988 89999


Q ss_pred             CCCCCCCCCeEEEEeCCCCce-------eEEee-cCCceEEEEEec-CccEEEe---CCeEEEEEcCCC---eeeEEEee
Q 014007          148 GPDPQYPLNKVMIWDDHQSRC-------IGELS-FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADL---KLLHQIET  212 (432)
Q Consensus       148 ~~d~~~~~~~v~iwd~~~~~~-------~~~~~-~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~---~~~~~~~~  212 (432)
                      +.|     |.|++||+.++..       ...+. |...|.+++|+| ++.++++   |+.|++||++++   +.+..+..
T Consensus       201 ~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          201 SDD-----HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             CTT-----SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eCC-----CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            988     9999999987422       34454 889999999999 5666653   899999999987   57777888


Q ss_pred             ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCC-EEEEEcCCCceEEEEECC
Q 014007          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTL  289 (432)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~~i~vwd~~  289 (432)
                      |...+.+++|+|+++.++++  |+.||.|++||++.  ..+..+..|...|.+++|+|+++ +|++++.|+. |++||+.
T Consensus       276 ~~~~v~~i~~~p~~~~~l~t--g~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~  352 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILAT--GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLS  352 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEE--EETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGG
T ss_pred             CCCCeEEEEeCCCCCCEEEE--EeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCC
Confidence            99999999999999876543  35899999999987  45677888999999999999985 6999999999 9999998


Q ss_pred             C--------------CceEEEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCC
Q 014007          290 D--------------GTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       290 ~--------------~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~  336 (432)
                      .              .+++..+.  .|...|.+++|+|+++ +|++++.||.|+||++....
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             CCccccCccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            7              24555444  3668899999999999 89999999999999997653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=4e-30  Score=238.61  Aligned_cols=265  Identities=12%  Similarity=0.011  Sum_probs=172.0

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEE---eecccCcceeEEEEeeeC--------CeEEEecCC
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR---RDFERGGGIGVVEMLFRC--------NILALVGGG  148 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~---~~~~~~~~~~v~~~~~~~--------~~~~~~s~~  148 (432)
                      ...|...+....+++++.+|++++ |++|+|||+...+....   ..+. +|...|.+++|+|        ++..|++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCEEEEEE
Confidence            344555566666777888899998 66699999988765432   2344 8999999999987        789999999


Q ss_pred             CCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEe
Q 014007          149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (432)
Q Consensus       149 ~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  223 (432)
                      .|     ++|+|||+.++..+..+. |...|.+++|+|++. ++++   |++|++||+++++.......+........++
T Consensus       164 ~D-----~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s  238 (393)
T 4gq1_A          164 DD-----CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT  238 (393)
T ss_dssp             TT-----SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred             CC-----CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence            99     999999998877666555 999999999999874 5553   8999999999887665544333222222222


Q ss_pred             cCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEc-CCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC
Q 014007          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (432)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s-p~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~  302 (432)
                      ++....                   .......+|...+.++.|+ |+|+.|++++.|+. +++||+..++....+..  +
T Consensus       239 ~~~~~~-------------------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~--~  296 (393)
T 4gq1_A          239 LNTLPL-------------------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISD--S  296 (393)
T ss_dssp             EESGGG-------------------C------CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC--------------
T ss_pred             cccccc-------------------eeeeecccccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEee--e
Confidence            211111                   1112234688899999987 79999999999999 99999988876666553  2


Q ss_pred             cCceEEEE------------------ECC--CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeec
Q 014007          303 RAEIYSLA------------------FSS--NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV  362 (432)
Q Consensus       303 ~~~i~~~~------------------~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (432)
                      ...+..+.                  |+|  ++.++++|+.||+|++||+.+++.                         
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-------------------------  351 (393)
T 4gq1_A          297 TMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS-------------------------  351 (393)
T ss_dssp             -------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC-------------------------
T ss_pred             cCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE-------------------------
Confidence            22333332                  333  344677888999999999998763                         


Q ss_pred             ccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          363 LPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                                ...+..|...|.+++|+|||++||+++.+| +.+|++
T Consensus       352 ----------~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          352 ----------NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             ----------CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             ----------EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence                      224567888999999999999999998776 555554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=6.2e-28  Score=223.89  Aligned_cols=238  Identities=12%  Similarity=0.094  Sum_probs=197.1

Q ss_pred             CCeEEEEEcCCCCEE-EEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEe
Q 014007           86 PTLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l-~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd  162 (432)
                      ..+.+++|+|+|++| ++++ ++.|++||+.+++..  ..+.  +...+.+++|++++..+ +++..+     +.|++||
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--~~~~--~~~~v~~~~~spdg~~l~~~~~~~-----~~v~v~d  102 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--ATVP--AGSSPQGVAVSPDGKQVYVTNMAS-----STLSVID  102 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--EEEE--CSSSEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--EEEE--CCCCccceEECCCCCEEEEEECCC-----CEEEEEE
Confidence            458999999999976 5554 666999999888766  4443  23388999999998765 566666     9999999


Q ss_pred             CCCCceeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC
Q 014007          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (432)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (432)
                      +.+++.+..+.+...+.+++|+|++..++ +   ++.|++||+.+++.+..+..+. .+..++|+|+++.++++  +..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~--~~~~  179 (391)
T 1l0q_A          103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVA--NFDS  179 (391)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEE--ETTT
T ss_pred             CCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEE--eCCC
Confidence            99999988888777899999999998664 3   7899999999999888887654 45789999999876554  3478


Q ss_pred             CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc---CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC
Q 014007          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (432)
Q Consensus       239 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  315 (432)
                      +.|++||+++........+...+.+++|+|+|++|++++   .++. |++||+.+++.+..+..+   ..+.+++|+|+|
T Consensus       180 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg  255 (391)
T 1l0q_A          180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPVG---PDPAGIAVTPDG  255 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEECC---SSEEEEEECTTS
T ss_pred             CEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEEEecC---CCccEEEEccCC
Confidence            999999999877666666778899999999999999888   6888 999999999998888853   468999999999


Q ss_pred             CEE-EEEeCCCeEEEEEecCCCCCC
Q 014007          316 QWL-AVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       316 ~~l-~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      ++| ++++.|+.|++||+.+++.+.
T Consensus       256 ~~l~~s~~~d~~v~v~d~~~~~~~~  280 (391)
T 1l0q_A          256 KKVYVALSFXNTVSVIDTATNTITA  280 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEE
Confidence            987 566789999999999887543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.4e-29  Score=234.48  Aligned_cols=258  Identities=13%  Similarity=0.142  Sum_probs=193.0

Q ss_pred             eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc---eeEEee-c-------------------------------
Q 014007          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR---CIGELS-F-------------------------------  174 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~---~~~~~~-~-------------------------------  174 (432)
                      ..+.++.|++++.+++++. +     +.|++||+.+|+   .+..+. +                               
T Consensus         5 ~p~~~v~~s~dg~~l~~~~-~-----~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAII-K-----NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS   78 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEE-T-----TEEEEEEEETTTEEEEEEEEECCC------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEe-C-----CeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence            3556778999998777664 4     899999999998   555554 1                               


Q ss_pred             -----------------------CCceEEEEEecCccEE-Ee---CCeEEEEEcC--CCeeeEEEe--eccCCcceEEEe
Q 014007          175 -----------------------RSEVRSVKLRRDRIIV-VL---EQKIFVYNFA--DLKLLHQIE--TIANPKGLCAVS  223 (432)
Q Consensus       175 -----------------------~~~v~~~~~~~~~~~~-~~---d~~i~i~d~~--~~~~~~~~~--~~~~~~~~~~~~  223 (432)
                                             .+.|.+++|+|++.++ ++   |+.|++||+.  +++.+..+.  .+...+..++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  158 (450)
T 2vdu_B           79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA  158 (450)
T ss_dssp             ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred             CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence                                   1259999999999986 43   8999999999  888888776  456778899999


Q ss_pred             cCCCcEEEEeecCCCCcEEEEEccCCce-----eeeeccCCceeEEEEcCC---CCEEEEEcCCCceEEEEECCCCceEE
Q 014007          224 QGVGSLVLVCPGLQKGQVRVEHYASKRT-----KFIMAHDSRIACFALTQD---GQLLATSSTKGTLVRIFNTLDGTLLQ  295 (432)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~-----~~~~~~~~~i~~~~~sp~---~~~l~~~~~dg~~i~vwd~~~~~~~~  295 (432)
                      |+++.++.+   +.+|.|++|++.....     ..+.+|...|.+++|+|+   +++|++++.|+. |++||+++++++.
T Consensus       159 p~~~~l~~~---~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~  234 (450)
T 2vdu_B          159 EDDTTVIIA---DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQCFIVD  234 (450)
T ss_dssp             TTSSEEEEE---ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCTTCEE
T ss_pred             CCCCEEEEE---eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCCceee
Confidence            999865433   3789999999987443     267889999999999999   999999999999 9999999999887


Q ss_pred             EEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEE
Q 014007          296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ  375 (432)
Q Consensus       296 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (432)
                      .+..+ |...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+...........      ..+..+.    ...
T Consensus       235 ~~~~~-h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~----~~~  302 (450)
T 2vdu_B          235 KWLFG-HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH------LAPPRFQ----NEN  302 (450)
T ss_dssp             EECCC-CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS------BC------------
T ss_pred             eeecC-CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc------ccccccc----ccc
Confidence            75432 77899999999 999999999999999999998874332210000000000000      0000000    000


Q ss_pred             EEecCCCceEEEEccCCCEEEEEe-cCCeEEEEEe
Q 014007          376 FRLVEGSPYIVAFGHQKNTVVILG-MDGSFYRCQF  409 (432)
Q Consensus       376 ~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~  409 (432)
                      .......|..++|+|++++|++++ .|+.|++|++
T Consensus       303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            112335689999999999999999 8999999999

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=2.3e-30  Score=243.75  Aligned_cols=204  Identities=15%  Similarity=0.097  Sum_probs=165.4

Q ss_pred             CcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe--e-cCCceEEEEEec-CccEEEe---CCeEEE
Q 014007          127 GGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL--S-FRSEVRSVKLRR-DRIIVVL---EQKIFV  198 (432)
Q Consensus       127 ~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~--~-~~~~v~~~~~~~-~~~~~~~---d~~i~i  198 (432)
                      .|...|.+++|+| +...|++|+.|     |.|+|||+.+++....+  . |.+.|.+++|+| ++.++++   |++|++
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~d-----g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKG-----GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETT-----SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCC-----CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            4777899999998 45689999999     99999999877654433  3 899999999998 6777773   899999


Q ss_pred             EEcCCCeeeEEEeec--cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCC-EEEE
Q 014007          199 YNFADLKLLHQIETI--ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ-LLAT  275 (432)
Q Consensus       199 ~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~  275 (432)
                      ||++++........+  ...+.+++|++++..+  ++ |+.||.|++||++.+.+..+.+|...|.+++|+|++. +|++
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~-g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMV--VT-GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTEE--EE-ECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCEE--EE-EeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEE
Confidence            999875543333222  2345678999998744  33 4589999999999988888999999999999999876 7889


Q ss_pred             EcCCCceEEEEECCCCceEEEEE-eCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          276 SSTKGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       276 ~~~dg~~i~vwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      |+.|+. |++||+++.+....+. ...|...|++++|+|+|++|++++.||.|+|||+.+++...
T Consensus       269 ~s~d~~-v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~  332 (435)
T 4e54_B          269 ASVDQT-VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL  332 (435)
T ss_dssp             EETTSB-CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred             ecCcce-eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence            999999 9999998876544332 12377899999999999999999999999999999887543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=6.8e-29  Score=227.03  Aligned_cols=244  Identities=12%  Similarity=0.101  Sum_probs=181.6

Q ss_pred             EEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccE
Q 014007          110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII  189 (432)
Q Consensus       110 iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  189 (432)
                      ||++.+....  ..+. .|...|.+++|++++..+++++.+      .+++||+.+++.+....+. .+..+++.+++..
T Consensus         3 i~s~~~~~~~--~~~~-~h~~~V~~v~fs~dg~~la~g~~~------~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~   72 (355)
T 3vu4_A            3 LGSMITRNPI--VPEN-HVSNPVTDYEFNQDQSCLILSTLK------SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNY   72 (355)
T ss_dssp             -------------------CCCCCEEEECTTSSEEEEECSS------EEEEEEETTEEEEEEEECS-CCCEEEECTTSSE
T ss_pred             cccccccCCc--cccc-cCCCceEEEEECCCCCEEEEEcCC------EEEEEecCCcceeeeeecC-CeEEEEEcCCCCE
Confidence            4555444333  2333 688999999999999999998875      5789999887766555433 5788888888776


Q ss_pred             EEe----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ceeeeeccCCceeE
Q 014007          190 VVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIAC  263 (432)
Q Consensus       190 ~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~i~~  263 (432)
                      ++.    |++|++||+.+++.+..+. +...+..+.++++  .++++    .++.|++||+...  .+..+..   ....
T Consensus        73 ~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~----~~~~i~i~d~~~~~~~~~~~~~---~~~~  142 (355)
T 3vu4_A           73 VAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVS----YGDVISVFKFGNPWKRITDDIR---FGGV  142 (355)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEE----ETTEEEEEESSTTCCBSSCCEE---EEEE
T ss_pred             EEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEE----EcCEEEEEECCCCceeeEEecc---CCce
Confidence            642    6799999999999998886 5567778888765  33332    3789999999875  3334443   4455


Q ss_pred             EEEcCCCCEEEE--EcCCCceEEEEECCCCc----------------eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC
Q 014007          264 FALTQDGQLLAT--SSTKGTLVRIFNTLDGT----------------LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (432)
Q Consensus       264 ~~~sp~~~~l~~--~~~dg~~i~vwd~~~~~----------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  325 (432)
                      +++++  .++++  |+.||. |++||+.+++                ++..+..  |...|.+++|+|+|++|++|+.||
T Consensus       143 ~~~s~--~~la~~sg~~~g~-v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~--h~~~v~~~~~s~~g~~l~s~s~d~  217 (355)
T 3vu4_A          143 CEFSN--GLLVYSNEFNLGQ-IHITKLQSSGSATTQDQGVQQKAILGKGVLIKA--HTNPIKMVRLNRKSDMVATCSQDG  217 (355)
T ss_dssp             EEEET--TEEEEEESSCTTC-EEEEECCC------------------CCEEECC--CSSCEEEEEECTTSSEEEEEETTC
T ss_pred             EEEEc--cEEEEeCCCcCcE-EEEEECCCCCccccccccccccccCcccEEEEc--cCCceEEEEECCCCCEEEEEeCCC
Confidence            66777  56666  588999 9999999865                2555654  778999999999999999999999


Q ss_pred             e-EEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE-e-cCCCceEEEEccCCCEEEEEecCC
Q 014007          326 T-VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR-L-VEGSPYIVAFGHQKNTVVILGMDG  402 (432)
Q Consensus       326 ~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~~~dg  402 (432)
                      + |+|||+++++.                                   +..+. + |.+.|++++|+|++++|++++.||
T Consensus       218 ~~v~iwd~~~~~~-----------------------------------~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          218 TIIRVFKTEDGVL-----------------------------------VREFRRGLDRADVVDMKWSTDGSKLAVVSDKW  262 (355)
T ss_dssp             SEEEEEETTTCCE-----------------------------------EEEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred             CEEEEEECCCCcE-----------------------------------EEEEEcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence            8 99999998763                                   34566 4 889999999999999999999999


Q ss_pred             eEEEEEecCCC
Q 014007          403 SFYRCQFDPVN  413 (432)
Q Consensus       403 ~v~iw~~~~~~  413 (432)
                      .|++|++....
T Consensus       263 ~v~iw~~~~~~  273 (355)
T 3vu4_A          263 TLHVFEIFNDQ  273 (355)
T ss_dssp             EEEEEESSCCS
T ss_pred             EEEEEEccCCC
Confidence            99999996643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=1.1e-28  Score=230.02  Aligned_cols=242  Identities=11%  Similarity=0.106  Sum_probs=187.9

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC---CeEEEecCCCCCCCCCC
Q 014007           82 SSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLN  156 (432)
Q Consensus        82 ~~~~~~v~~~~~s~-~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~~~d~~~~~~  156 (432)
                      ..|...|++++|+| ++.+|++++ ++.|++|++.+.+...  .+.  +...+..+.+.+   ++..+++++.+     +
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  166 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD--VFN--FEETVYSHHMSPVSTKHCLVAVGTRG-----P  166 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE--EEE--CSSCEEEEEECSSCSSCCEEEEEESS-----S
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce--ecc--CCCceeeeEeecCCCCCcEEEEEcCC-----C
Confidence            46999999999999 777888888 5559999999887663  333  556677777766   55588888888     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccE-EEe---CCeEEEEEcCCCe-eeEEE---------------eeccC
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII-VVL---EQKIFVYNFADLK-LLHQI---------------ETIAN  215 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~---d~~i~i~d~~~~~-~~~~~---------------~~~~~  215 (432)
                      .|++||+.+++.+..+. |...|.+++|+|++.. +++   |+.|++||++++. .+..+               ..+..
T Consensus       167 ~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (408)
T 4a11_B          167 KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG  246 (408)
T ss_dssp             SEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred             eEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence            99999999999998888 9999999999999873 542   8999999998765 33333               45777


Q ss_pred             CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee-eec-----cCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMA-----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~-----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~  289 (432)
                      .+..++|+|+++.++.   ++.|+.|++||+.+..... ...     ....+........+..+++++.++. |++||+.
T Consensus       247 ~v~~~~~~~~~~~l~~---~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~d~~  322 (408)
T 4a11_B          247 KVNGLCFTSDGLHLLT---VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST-IAVYTVY  322 (408)
T ss_dssp             CEEEEEECTTSSEEEE---EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTE-EEEEETT
T ss_pred             ceeEEEEcCCCCEEEE---ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCE-EEEEECc
Confidence            8899999999875543   3479999999998854322 111     1122222223344556777788999 9999999


Q ss_pred             CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       290 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      +++++..+..  |...|.+++|+|++++|++++.||.|++||+.+.+.+
T Consensus       323 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          323 SGEQITMLKG--HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             TCCEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred             CCcceeeecc--CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence            9999999875  6689999999999999999999999999999998754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.1e-31  Score=244.42  Aligned_cols=276  Identities=8%  Similarity=-0.015  Sum_probs=198.8

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      ..+|...|.+++|+|+|      .++.+.+|+   .+......+  .+...|.+++|+|++..+++++.|     |.|++
T Consensus        48 l~gh~~~v~~V~FsPdg------~~~~~~~~~---~~~~~~~~~--~~~~~V~~vawSPdG~~LAs~s~d-----g~V~i  111 (588)
T 2j04_A           48 INCNSKNLFHVKEFPLE------FENKLDFEL---AQQNGLLNS--QPVCYPRVCKPSPIDDWMAVLSNN-----GNVSV  111 (588)
T ss_dssp             CSSBGGGTEEEEEECCC------CCCTTTTSC---CCSSCSSTT--SCSCCEEEEEECSSSSCEEEEETT-----SCEEE
T ss_pred             ecCCCccEEEEEECCCC------CcceEEEEe---CCCceEeec--CCCCcEEEEEECCCCCEEEEEeCC-----CcEEE
Confidence            36899999999999999      344444454   333222333  358899999999999999999999     99999


Q ss_pred             EeCCCCceeEEeecCC-----ceEEEEEecCccEEEe---CCeEEEEEcCCCe-------eeEEE----eeccCCcceEE
Q 014007          161 WDDHQSRCIGELSFRS-----EVRSVKLRRDRIIVVL---EQKIFVYNFADLK-------LLHQI----ETIANPKGLCA  221 (432)
Q Consensus       161 wd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~-------~~~~~----~~~~~~~~~~~  221 (432)
                      ||...  ++..+.|..     .|.+++|+|||+++++   ||+|++||+.++.       .+..+    .+|.+.|..++
T Consensus       112 wd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVa  189 (588)
T 2j04_A          112 FKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIV  189 (588)
T ss_dssp             EETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEE
T ss_pred             EeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEE
Confidence            99544  555555443     5999999999999994   8999999998875       35666    44567899999


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccCCce----eee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRT----KFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~  296 (432)
                      |+|+|  + ++ + +.|+.|++||+.++..    ..+ .+|...|.+++|+  |++||+++ +++ |++||+.+++....
T Consensus       190 wSPdg--L-aa-s-s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~~~~~~  260 (588)
T 2j04_A          190 WYEDV--L-VA-A-LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNYSISSL  260 (588)
T ss_dssp             EETTE--E-EE-E-ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTTEEEEE
T ss_pred             EcCCc--E-EE-E-eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCCeEEEE
Confidence            99998  3 33 2 3699999999988664    345 4788999999999  68899887 688 99999988776433


Q ss_pred             EEeCCCcCceEEEEE--CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEee-cccceeecceee
Q 014007          297 VRRGADRAEIYSLAF--SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG-VLPKYFSSEWSV  373 (432)
Q Consensus       297 ~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  373 (432)
                      ..+  |...+..++|  +||+..|+++++||+ ++|..+.-.             ..++........ .+..+......+
T Consensus       261 ~~g--h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~-------------~spd~~l~a~~d~~v~lW~~~g~~l  324 (588)
T 2j04_A          261 KTG--SLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELH-------------VTADNIIAPYLEKKFKKWSTIWNEF  324 (588)
T ss_dssp             ECS--CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEE-------------EECCCSSHHHHHHHHHHTTTTTTSS
T ss_pred             EcC--CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEE-------------ECCCceEEEEcCCEEEEEECCCCce
Confidence            323  7789999999  999999999999999 999986211             011111100000 000000000001


Q ss_pred             EEEEecCCCceEEEEccCCCEEEEEec
Q 014007          374 AQFRLVEGSPYIVAFGHQKNTVVILGM  400 (432)
Q Consensus       374 ~~~~~~~~~v~~~~~s~~~~~l~~~~~  400 (432)
                      ..+.. ...|.+++|||||+.+|+++.
T Consensus       325 ~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          325 NNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             eeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            11112 334899999999999998875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.6e-27  Score=224.19  Aligned_cols=279  Identities=11%  Similarity=0.087  Sum_probs=216.7

Q ss_pred             CCCCeEEEE---EcCCCCEEEEEc---------------CCcEEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEE
Q 014007           84 PPPTLLHIS---FNQDHGCFAAGT---------------DHGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILA  143 (432)
Q Consensus        84 ~~~~v~~~~---~s~~~~~l~~~~---------------~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~  143 (432)
                      ....+..++   |+|++..+.+..               ++.++||.++.  ........+.  ....+.+++|++++.+
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~  136 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTRL  136 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSEE
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCeE
Confidence            345678888   888877655432               11135665543  4333334443  3344568889998889


Q ss_pred             EecCCCCCCCCCCeEEEEeCCCCceeEEe-----e-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc
Q 014007          144 LVGGGPDPQYPLNKVMIWDDHQSRCIGEL-----S-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA  214 (432)
Q Consensus       144 ~~s~~~d~~~~~~~v~iwd~~~~~~~~~~-----~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~  214 (432)
                      +++++.+     +.|++||+.+++.+..+     . |...|.+++|++++.++++   |+.|++||+++++.+..+..+.
T Consensus       137 ~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~  211 (433)
T 3bws_A          137 AIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG  211 (433)
T ss_dssp             EEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS
T ss_pred             EEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC
Confidence            9998888     99999999999887633     3 6778999999999988874   7999999999999998888888


Q ss_pred             CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc--------CCCceEEEE
Q 014007          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS--------TKGTLVRIF  286 (432)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--------~dg~~i~vw  286 (432)
                      ..+..++|+|+++.++++  +..++.|++||++++.......+...+.+++|+|+|++|++++        .|+. |++|
T Consensus       212 ~~~~~~~~~~~~~~l~~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~-i~~~  288 (433)
T 3bws_A          212 KWSKILLYDPIRDLVYCS--NWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGR-LGIY  288 (433)
T ss_dssp             SSEEEEEEETTTTEEEEE--ETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEE-EEEE
T ss_pred             CCeeEEEEcCCCCEEEEE--ecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCe-EEEE
Confidence            889999999999876544  3478999999998866554444556799999999999999888        4788 9999


Q ss_pred             ECCCCceEEEEEeCCCcCceEEEEECCCCCEE-EEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007          287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL-AVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK  365 (432)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (432)
                      |+.+++.+..+.   +...+.+++|+|+++.+ ++++.|+.|++||+.+++.                            
T Consensus       289 d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~----------------------------  337 (433)
T 3bws_A          289 SMDKEKLIDTIG---PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV----------------------------  337 (433)
T ss_dssp             ETTTTEEEEEEE---EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE----------------------------
T ss_pred             ECCCCcEEeecc---CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE----------------------------
Confidence            999998887775   44678999999999755 5668999999999987652                            


Q ss_pred             eeecceeeEEEEecCCCceEEEEccCCCEEEEEec---------------CCeEEEEEecC
Q 014007          366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM---------------DGSFYRCQFDP  411 (432)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~v~iw~~~~  411 (432)
                             ...+ .+...+..++|+|++++|++++.               ||.|++|++..
T Consensus       338 -------~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          338 -------QKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             -------EEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred             -------EEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence                   1122 25567899999999999998887               57999988743

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.5e-29  Score=226.31  Aligned_cols=232  Identities=16%  Similarity=0.209  Sum_probs=178.2

Q ss_pred             EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcC---------C
Q 014007          135 MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFA---------D  203 (432)
Q Consensus       135 ~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~---------~  203 (432)
                      ..+..++..+++++.|     |.|++||+.+++.+..+. ...|.++.++|+  ++.  .|++|++|+..         +
T Consensus        42 ~~~~~d~~~l~sg~~D-----g~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~  113 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCED-----GALHFTQLKDSKTITTIT-TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKT  113 (343)
T ss_dssp             SSSSEEEEEEEEEEET-----TEEEEEEESSSSCEEEEE-EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred             hhhcCCCCEEEEECCC-----CcEEEEECCCCcEEEEEe-cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCC
Confidence            3455678899999999     999999999998888776 456777777777  333  27788888654         5


Q ss_pred             CeeeEEEe-eccCCcceEEEec--CCCcEEEEeecCCCCcEEEEEccCCceeee--eccCCceeEEEEcCCCCEEEEEcC
Q 014007          204 LKLLHQIE-TIANPKGLCAVSQ--GVGSLVLVCPGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSST  278 (432)
Q Consensus       204 ~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~  278 (432)
                      ++.+..+. .|...+..++++|  +++.+  ++ ++.||.|++||++++.....  ..|...|.+++|+|+|.+|++|+.
T Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l--~s-~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~  190 (343)
T 3lrv_A          114 NKVLREIEVDSANEIIYMYGHNEVNTEYF--IW-ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP  190 (343)
T ss_dssp             CCEEEEEECCCSSCEEEEECCC---CCEE--EE-EETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT
T ss_pred             cceeEEeecCCCCCEEEEEcCCCCCCCEE--EE-EeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC
Confidence            55455544 4557799999999  77644  33 34899999999998665433  245668999999999999999999


Q ss_pred             CCceEEEEECCCCceE-EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCce
Q 014007          279 KGTLVRIFNTLDGTLL-QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLS  357 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (432)
                      |+. |++||+++++.+ ..+.. .|...|.+++|+|+|.+|++++ |+.|++||+++.+....+..              
T Consensus       191 dg~-i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~--------------  253 (343)
T 3lrv_A          191 DGI-LDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT--------------  253 (343)
T ss_dssp             TSC-EEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC--------------
T ss_pred             CCE-EEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc--------------
Confidence            999 999999999887 67764 2678999999999999999999 55999999998875432210              


Q ss_pred             eEeecccceeecceeeEEEEecCCCc--eEEEEccCCCEEEEEec-CCeEEEEEecCC
Q 014007          358 FIKGVLPKYFSSEWSVAQFRLVEGSP--YIVAFGHQKNTVVILGM-DGSFYRCQFDPV  412 (432)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~  412 (432)
                                        +..|...+  .+++|+|+|++|++++. |+.+++|+++..
T Consensus       254 ------------------~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          254 ------------------YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             ------------------CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ------------------cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence                              11122223  46999999999999998 999999999654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=3.8e-28  Score=228.63  Aligned_cols=227  Identities=15%  Similarity=0.294  Sum_probs=195.2

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA  202 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~  202 (432)
                      ++...|.++.+  ++..+++++.|     |.|++||+.+++.+..+. |...|.+++|  ++.++++   ||.|++||+.
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRD-----NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESS-----SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCC-----CeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence            46667888877  56788888888     999999999999999998 9999999999  5666663   8999999999


Q ss_pred             CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce----eeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT----KFIMAHDSRIACFALTQDGQLLATSST  278 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (432)
                      +++.+..+..|...+..+++++  +  .+++ |+.||.|++||+++...    ..+.+|...|.+++|  ++++|++|+.
T Consensus       202 ~~~~~~~~~~h~~~v~~l~~~~--~--~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          202 TGEMLNTLIHHCEAVLHLRFNN--G--MMVT-CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             SCCEEEEECCCCSCEEEEECCT--T--EEEE-EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             CCcEEEEEcCCCCcEEEEEEcC--C--EEEE-eeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence            9999999999999888888864  3  3343 44899999999987543    456789999999999  7889999999


Q ss_pred             CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF  358 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (432)
                      |+. |++||+++++++..+..  |...|.++.|  ++++|++|+.||.|++||+++++.                     
T Consensus       275 dg~-i~vwd~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~---------------------  328 (435)
T 1p22_A          275 DRT-IKVWNTSTCEFVRTLNG--HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC---------------------  328 (435)
T ss_dssp             TSE-EEEEETTTCCEEEEEEC--CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE---------------------
T ss_pred             CCe-EEEEECCcCcEEEEEcC--CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCE---------------------
Confidence            999 99999999999999985  6688999999  568999999999999999998762                     


Q ss_pred             EeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                    +..+.+|.+.|.+++|  ++++|++|+.||.|++|++..
T Consensus       329 --------------~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          329 --------------LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             --------------EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred             --------------EEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence                          4457788999999998  789999999999999999854

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=8.2e-28  Score=224.33  Aligned_cols=280  Identities=13%  Similarity=0.059  Sum_probs=206.0

Q ss_pred             CCeEEEEEcCCCC-EEEEEc-----CC----cEEEEEc--CCCeeEEEeecccCcceeEEEEeeeC--------------
Q 014007           86 PTLLHISFNQDHG-CFAAGT-----DH----GFRIYNC--DPFREIFRRDFERGGGIGVVEMLFRC--------------  139 (432)
Q Consensus        86 ~~v~~~~~s~~~~-~l~~~~-----~~----~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~--------------  139 (432)
                      ..|....|++.|. ++++|+     ++    .|+|||+  .+++......+. +|...+..+++.+              
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            4677788988886 555664     34    5999999  888766555565 5655565555542              


Q ss_pred             -C-eEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---C---CeEEEEEcCCCeeeEEE
Q 014007          140 -N-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---E---QKIFVYNFADLKLLHQI  210 (432)
Q Consensus       140 -~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d---~~i~i~d~~~~~~~~~~  210 (432)
                       . ..++++...... ..+.|++||+..+ ....+. |...+.+++|+|+|+.+++   +   ..|++||+.+++.. .+
T Consensus       142 ~~~~l~~~s~~~~~~-~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l  218 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQ-FPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV  218 (415)
T ss_dssp             TTCEEEEEEECSSSS-CCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred             CCCEEEEEEecCCCC-ccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence             2 233333321100 0158999998754 445555 8999999999999998873   4   38999999988765 45


Q ss_pred             eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC-C--ceEEEEE
Q 014007          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFN  287 (432)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g--~~i~vwd  287 (432)
                      ..+...+..++|+|+|+.++++.....+..|++||+.++....+..|...+.+++|+|||++|++++.+ +  . |++||
T Consensus       219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~-i~~~d  297 (415)
T 2hqs_A          219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ-VYKVN  297 (415)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE-EEEEE
T ss_pred             ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE-EEEEE
Confidence            566778889999999997765543223445999999998888888899999999999999999888764 4  5 88889


Q ss_pred             CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (432)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (432)
                      +.+++.. .+..  +...+.+++|+|||++|++++.+   +.|++||+.+++.                           
T Consensus       298 ~~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---------------------------  347 (415)
T 2hqs_A          298 INGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------------------------  347 (415)
T ss_dssp             TTSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------------------------
T ss_pred             CCCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---------------------------
Confidence            9888753 3332  44678999999999999988754   5899999988762                           


Q ss_pred             ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCC---eEEEEEec
Q 014007          365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG---SFYRCQFD  410 (432)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~v~iw~~~  410 (432)
                               ..+..+. .+..++|+|||++|++++.++   .|++|+++
T Consensus       348 ---------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          348 ---------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             ---------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             ---------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence                     1223333 688999999999999988876   67777764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=3.7e-27  Score=216.35  Aligned_cols=245  Identities=13%  Similarity=0.127  Sum_probs=188.4

Q ss_pred             eecccCcceeEEEEeeeCC---eEEEecCCCCCCCCCCeEEEEeCCC-Ccee-EEee-cCCceEEEEEecCccEEEe---
Q 014007          122 RDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNKVMIWDDHQ-SRCI-GELS-FRSEVRSVKLRRDRIIVVL---  192 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~~~~~~v~iwd~~~-~~~~-~~~~-~~~~v~~~~~~~~~~~~~~---  192 (432)
                      ..+. +|...|.+++|+++   +..+++++.|     +.|++||+.+ +..+ ..+. |...|.+++|+|++.++++   
T Consensus        33 ~~~~-~h~~~v~~~~~~~~~~~g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           33 EVTS-SPDDSIGCLSFSPPTLPGNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             ECSS-CCSSCEEEEEECCTTSSSEEEEEEETT-----SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             Eecc-CCCCceEEEEEcCCCCCceEEEEECCC-----CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence            3444 79999999999999   5999999999     9999999987 5554 5555 9999999999999988874   


Q ss_pred             CCeEEEEEcCCCeeeEEEeeccCCcceEEE--ecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCC
Q 014007          193 EQKIFVYNFADLKLLHQIETIANPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG  270 (432)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~  270 (432)
                      |+.|++||+.+++.+. +..|...+..++|  ++++.  ++++ ++.|+.|++||+++............+.++.+.+  
T Consensus       107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~--~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--  180 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS--CVMT-GSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--  180 (368)
T ss_dssp             TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE--EEEE-EETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--
T ss_pred             CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC--EEEE-ccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--
Confidence            8999999999988766 4568899999999  55554  3443 3489999999998855443333344667776654  


Q ss_pred             CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCE----EEEEeCCCeEEEEEecCCCCCCCCCCCCC
Q 014007          271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW----LAVSSDKGTVHVFNLKVNSGSARSEPRST  346 (432)
Q Consensus       271 ~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  346 (432)
                      ..+++++.++. +++||++............+...+..+.+.++...    +++++.||.|++||++......       
T Consensus       181 ~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~-------  252 (368)
T 3mmy_A          181 PMAVVATAERG-LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-------  252 (368)
T ss_dssp             TEEEEEEGGGC-EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH-------
T ss_pred             CeeEEEeCCCc-EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc-------
Confidence            47888889999 99999988765544443334456667776665544    9999999999999998764100       


Q ss_pred             CCCCCCCCCceeEeecccceeecceeeEEEEecC------------CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          347 SDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE------------GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                               ....+..|.            ..|++++|+|++++|++++.||.|++|++..
T Consensus       253 -------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          253 -------------------------DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             -------------------------HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             -------------------------cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence                                     012233333            3799999999999999999999999999853

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=4e-27  Score=206.49  Aligned_cols=240  Identities=13%  Similarity=0.084  Sum_probs=170.8

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CC---c-EEEEEcCCC----eeEEEeecccCcceeEEEEeeeCCeEEEecCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DH---G-FRIYNCDPF----REIFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~---~-i~iw~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  148 (432)
                      .....+|..+|..+.+.||-.-|++.. .+   . |+..-+.+.    ....   ..+++...+..+   +++..+.++.
T Consensus        79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l---~s~g~~~~v~~l---~~g~lv~ss~  152 (356)
T 2w18_A           79 LYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL---LKSGNIKAVLGL---TKRRLVSSSG  152 (356)
T ss_dssp             EEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEE---EEEEEEEEEEEE---TTTEEEEEES
T ss_pred             eEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEE---EeCCCeEEEEec---CCCcEEEecc
Confidence            356777888899999988765333322 11   1 333322232    2221   112455556554   5677776633


Q ss_pred             --CCCCCCCCeEEEEeC-CCCceeEEee-cCCceEEEEEec---CccEEEe---CCeEEEEEcCCCeeeEEEeeccC---
Q 014007          149 --PDPQYPLNKVMIWDD-HQSRCIGELS-FRSEVRSVKLRR---DRIIVVL---EQKIFVYNFADLKLLHQIETIAN---  215 (432)
Q Consensus       149 --~d~~~~~~~v~iwd~-~~~~~~~~~~-~~~~v~~~~~~~---~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~---  215 (432)
                        .|     +.|++|++ .+|+.+..+. |...+..++|++   ++.++++   |++|+|||++++++++++..+..   
T Consensus       153 ~g~d-----~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~  227 (356)
T 2w18_A          153 TLSD-----QQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA  227 (356)
T ss_dssp             SSTT-----CEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C
T ss_pred             cCCC-----CcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee
Confidence              56     99999999 4588888777 899999999999   6788885   99999999999999999976543   


Q ss_pred             CcceEEEecCCCcEEE---------EeecCCCCcEEEEEccCCceee-e-----eccCCceeEEEEcCCCCEEEEEcCCC
Q 014007          216 PKGLCAVSQGVGSLVL---------VCPGLQKGQVRVEHYASKRTKF-I-----MAHDSRIACFALTQDGQLLATSSTKG  280 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~---------~~~g~~d~~i~i~d~~~~~~~~-~-----~~~~~~i~~~~~sp~~~~l~~~~~dg  280 (432)
                      .+..++|+|++..++.         +.+|+.|++|++||..++.... +     .+|...+.+..+  ++.++++++.|+
T Consensus       228 ~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~Dg  305 (356)
T 2w18_A          228 SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSG  305 (356)
T ss_dssp             CCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTS
T ss_pred             eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCC
Confidence            4556689999875532         2346789999999998865432 2     256555554444  478999999999


Q ss_pred             ceEEEEECCCCceEEEEEeCCCcCc-eEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          281 TLVRIFNTLDGTLLQEVRRGADRAE-IYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       281 ~~i~vwd~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      + |+|||+.+++++.++.+  |... +..++|+|||++|++|+.|++|+|||+.
T Consensus       306 T-IkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          306 T-IAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             C-EEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             c-EEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            9 99999999999999985  3344 4568999999999999999999999963

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=7.8e-26  Score=217.39  Aligned_cols=281  Identities=11%  Similarity=0.093  Sum_probs=216.6

Q ss_pred             EEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC--CCCce
Q 014007           92 SFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD--HQSRC  168 (432)
Q Consensus        92 ~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~--~~~~~  168 (432)
                      .|+|++.+++++. ++.|.+||..+++..  ..+..++.  +..+.|++++..+++++.+     +.|++||+  .+++.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~--~~i~~g~~--~~~v~~spdg~~l~v~~~d-----~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV--KVIDTGYA--VHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTK  214 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEE--EEEECSTT--EEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEE--EEEecCcc--cceEEECCCCCEEEEECCC-----CeEEEEECcCCCCcE
Confidence            4899998888887 555999999888766  44442333  7788999999999999988     99999999  88999


Q ss_pred             eEEeecCCceEEEEEec----CccEEEe----CCeEEEEEcCCCeeeEEEeecc-----------CCcceEEEecCCCcE
Q 014007          169 IGELSFRSEVRSVKLRR----DRIIVVL----EQKIFVYNFADLKLLHQIETIA-----------NPKGLCAVSQGVGSL  229 (432)
Q Consensus       169 ~~~~~~~~~v~~~~~~~----~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  229 (432)
                      +.++.+...+..++|+|    +|+++++    +++|.+||..++++++.+....           ..+..+.+++++..+
T Consensus       215 ~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          215 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence            98888777889999999    9988773    7899999999999988886521           256678999988876


Q ss_pred             EEEeecCCCCcEEEEEccCCce-e-eeeccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCC--CcC
Q 014007          230 VLVCPGLQKGQVRVEHYASKRT-K-FIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGA--DRA  304 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~~-~-~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~--~~~  304 (432)
                      ++.  ...++.|.+||+..... . ....+...+..+.|+|+|++|+++ ..+++ |.+||+.+++++..+..+.  |..
T Consensus       295 ~vs--~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i~~g~~ph~g  371 (543)
T 1nir_A          295 IVN--VKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPG  371 (543)
T ss_dssp             EEE--ETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSBCCT
T ss_pred             EEE--ECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEeeccCCCCCCC
Confidence            554  35789999999987432 2 123466778999999999987655 45788 9999999999999887532  333


Q ss_pred             ceEEEEECCC-CCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCC
Q 014007          305 EIYSLAFSSN-AQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS  382 (432)
Q Consensus       305 ~i~~~~~s~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (432)
                      ....+ ++|+ |..++++. .|++|.+||+.+.....                            .....+.++..|.+.
T Consensus       372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~----------------------------~~~~~v~~l~~~g~~  422 (543)
T 1nir_A          372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ----------------------------YAWKKVAELQGQGGG  422 (543)
T ss_dssp             TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT----------------------------TBTSEEEEEECSCSC
T ss_pred             CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch----------------------------hcCeEEEEEEcCCCC
Confidence            33333 4677 66667765 68999999998732100                            001125678888888


Q ss_pred             ceEEEEccCCCEEEEEe-------cCCeEEEEEecCCC
Q 014007          383 PYIVAFGHQKNTVVILG-------MDGSFYRCQFDPVN  413 (432)
Q Consensus       383 v~~~~~s~~~~~l~~~~-------~dg~v~iw~~~~~~  413 (432)
                      +..++|+||+++|++++       .+++|.+|+++..+
T Consensus       423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence            89999999999999987       37899999986543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.2e-25  Score=216.08  Aligned_cols=297  Identities=14%  Similarity=0.117  Sum_probs=219.5

Q ss_pred             eEEEEEcCCCCEEEEEc-CCcEEEEEc--CCCeeEEEeecccCcceeEEEEeeeC----CeEEEecCC-CCCCCCCCeEE
Q 014007           88 LLHISFNQDHGCFAAGT-DHGFRIYNC--DPFREIFRRDFERGGGIGVVEMLFRC----NILALVGGG-PDPQYPLNKVM  159 (432)
Q Consensus        88 v~~~~~s~~~~~l~~~~-~~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~s~~-~d~~~~~~~v~  159 (432)
                      +.+++|+|||++|++++ ++.|++||+  .+++..  ..+.  +......++|++    ++..+++++ .+     ++|.
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~--~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~-----~~v~  251 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--AEIK--IGIEARSVESSKFKGYEDRYTIAGAYWP-----PQFA  251 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--EEEE--CCSEEEEEEECCSTTCTTTEEEEEEEES-----SEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE--EEEe--cCCCcceEEeCCCcCCCCCEEEEEEccC-----CeEE
Confidence            88999999999999888 555999999  666554  5554  455678999999    888777766 35     8999


Q ss_pred             EEeCCCCceeEEeec------------CCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeE--EEeeccCCcceEE
Q 014007          160 IWDDHQSRCIGELSF------------RSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLH--QIETIANPKGLCA  221 (432)
Q Consensus       160 iwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~  221 (432)
                      +||..+++++.++..            ...+.++.+++++..++ .   ++.|.+||+.+.+.+.  .+. +......+.
T Consensus       252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~  330 (543)
T 1nir_A          252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGG  330 (543)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEE
T ss_pred             EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCce
Confidence            999999998888762            22688999999876555 2   7899999998865544  443 345567899


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccCCceee-eec----cCCceeEEEEcCC-CCEEEEEc-CCCceEEEEECCC----
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMA----HDSRIACFALTQD-GQLLATSS-TKGTLVRIFNTLD----  290 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~----~~~~i~~~~~sp~-~~~l~~~~-~dg~~i~vwd~~~----  290 (432)
                      |+|++++++++.  ..++.|.+||..++++.. +..    |.+....+ ++|+ |.+++++. .|++ |.+||+.+    
T Consensus       331 ~spdg~~l~va~--~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~-V~v~d~~~~~~~  406 (543)
T 1nir_A          331 WDSSHRYFMTAA--NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS-ISLIGTDPKNHP  406 (543)
T ss_dssp             ECTTSCEEEEEE--GGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTTCT
T ss_pred             ECCCCCEEEEEe--cCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCce-EEEEEeCCCCCc
Confidence            999999776543  457899999999866543 332    55444444 4677 66677765 5788 99999998    


Q ss_pred             ---CceEEEEEeCCCcCceEEEEECCCCCEEEEEe-------CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEe
Q 014007          291 ---GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-------DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK  360 (432)
Q Consensus       291 ---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (432)
                         +++++++..  +...+..++|+|+|++|++++       .+++|.+||+.+++....                    
T Consensus       407 ~~~~~~v~~l~~--~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~--------------------  464 (543)
T 1nir_A          407 QYAWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ--------------------  464 (543)
T ss_dssp             TTBTSEEEEEEC--SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCE--------------------
T ss_pred             hhcCeEEEEEEc--CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeE--------------------
Confidence               899999996  446788899999999999987       267999999999874310                    


Q ss_pred             ecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe-----cCCeEEEEEecCCCCCcceEeeecccCCC
Q 014007          361 GVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG-----MDGSFYRCQFDPVNGGEMTQLEYNNFLKP  428 (432)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  428 (432)
                       .++   ...|  .-+..+...+..++|+|+|+.|+++.     .|+.|.|||  .++++.+..++..++..+
T Consensus       465 -~~~---v~~~--~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D--~~t~~~~~~i~~~~~~~p  529 (543)
T 1nir_A          465 -VLP---IAEW--ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD--DKTLKLKAVVKDPRLITP  529 (543)
T ss_dssp             -EEC---HHHH--HCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE--TTTTEEEEEECCTTCCSE
T ss_pred             -Eee---chhh--cccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE--CCCceEEEeecCCCccCC
Confidence             000   0000  00123345688999999999998763     479999966  477777777776555443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=2e-25  Score=224.30  Aligned_cols=284  Identities=13%  Similarity=0.049  Sum_probs=209.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc--CC-----cEEEEEcCCCeeEEEeecccCcc----------------------eeEEE
Q 014007           84 PPPTLLHISFNQDHGCFAAGT--DH-----GFRIYNCDPFREIFRRDFERGGG----------------------IGVVE  134 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~--~~-----~i~iw~~~~~~~~~~~~~~~~~~----------------------~~v~~  134 (432)
                      ....|.+++|||||++|++++  ++     .|++||+++++........ .+.                      ..+..
T Consensus        35 ~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           35 SGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSK-VVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             TCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGG-GTC--------------------CCEESCC
T ss_pred             CCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchh-hcccccccccchhhhhhhhhhhccccCcce
Confidence            356799999999999998876  44     4999999887765333222 111                      34788


Q ss_pred             EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC---ceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEE
Q 014007          135 MLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQ  209 (432)
Q Consensus       135 ~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~  209 (432)
                      +.|+|++..++.++.      +.|++||+.++   +......+...+..++|+|||++++  .++.|++||+.+++....
T Consensus       114 ~~~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             CEECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred             eEECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence            999999998887764      79999999888   4443333778899999999999887  488999999998876554


Q ss_pred             EeeccCC----------------cceEEEecCCCcEEEEeecCC------------------------------CCcEEE
Q 014007          210 IETIANP----------------KGLCAVSQGVGSLVLVCPGLQ------------------------------KGQVRV  243 (432)
Q Consensus       210 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~g~~------------------------------d~~i~i  243 (432)
                      ...+...                +..++|+|||+.++++.....                              ...|.+
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            4333221                367999999998876642110                              017888


Q ss_pred             EEccC-Cceeeee---ccCCceeEEEEcCCCCEEEEEcC-----CCceEEEEECCCCceEEEEEeCCCcC---ceEEEEE
Q 014007          244 EHYAS-KRTKFIM---AHDSRIACFALTQDGQLLATSST-----KGTLVRIFNTLDGTLLQEVRRGADRA---EIYSLAF  311 (432)
Q Consensus       244 ~d~~~-~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~-----dg~~i~vwd~~~~~~~~~~~~~~~~~---~i~~~~~  311 (432)
                      ||+.+ +....+.   .|...+..++| |||++|++++.     +.. |++||+.++++...+..+. ..   .+..++|
T Consensus       268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~  344 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHETS-PTWVPLHNSLRF  344 (741)
T ss_dssp             ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEEC-SSCCCCCSCCEE
T ss_pred             EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcCC-CCcCCcCCceEE
Confidence            89888 7665543   47788999999 99999987654     456 9999999999887776432 12   3468999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE-EEcc
Q 014007          312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV-AFGH  390 (432)
Q Consensus       312 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~  390 (432)
                      +|||+++++++.||.++||.+.....                                   ...+..+...|..+ +|+|
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~~~~-----------------------------------~~~l~~~~~~v~~~~~~s~  389 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDSKGK-----------------------------------AAALTHGNWSVDELLAVDE  389 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECSSSC-----------------------------------EEESCCSSSCEEEEEEEET
T ss_pred             CCCCeEEEEecCCCccEEEEEcCCCC-----------------------------------eeeeeecceEEEeEeEEeC
Confidence            99999999999999888888763220                                   11233445557666 6999


Q ss_pred             CCCEEEE-EecCC--eEEEEEecCC
Q 014007          391 QKNTVVI-LGMDG--SFYRCQFDPV  412 (432)
Q Consensus       391 ~~~~l~~-~~~dg--~v~iw~~~~~  412 (432)
                      ||+.|+. ++.++  .++||+++..
T Consensus       390 dg~~l~~~~~~~~~~~~~l~~~~~~  414 (741)
T 2ecf_A          390 KAGLAYFRAGIESARESQIYAVPLQ  414 (741)
T ss_dssp             TTTEEEEEECSSCTTCBEEEEEETT
T ss_pred             CCCEEEEEEeCCCCceEEEEEEEcC
Confidence            9998765 44455  8999999764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=9.3e-26  Score=210.45  Aligned_cols=237  Identities=12%  Similarity=0.064  Sum_probs=185.7

Q ss_pred             CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEec
Q 014007          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR  185 (432)
Q Consensus       106 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~  185 (432)
                      +.|++||++....   ..+. +|...+.+++|+|++..+++++.+.  ....|++||+.+++......+...+.+++|+|
T Consensus       159 ~~i~i~d~~g~~~---~~l~-~~~~~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp  232 (415)
T 2hqs_A          159 YELRVSDYDGYNQ---FVVH-RSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPRHNGAPAFSP  232 (415)
T ss_dssp             EEEEEEETTSCSC---EEEE-EESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEEEECCSSCEEEEEECT
T ss_pred             ceEEEEcCCCCCC---EEEe-CCCCcceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEEEeecCCCcccCEEEcC
Confidence            3599999975432   3333 4778899999999999888877650  01399999999998765555888999999999


Q ss_pred             CccEEE-e---C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC--cEEEEEccCCceeeeecc
Q 014007          186 DRIIVV-L---E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAH  257 (432)
Q Consensus       186 ~~~~~~-~---d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~  257 (432)
                      ||..++ +   +  ..|++||+.+++. ..+..+...+..++|+|+++.+++++  ..++  .|.+||+.++....+..+
T Consensus       233 dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s--~~~g~~~i~~~d~~~~~~~~l~~~  309 (415)
T 2hqs_A          233 DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTS--DQAGRPQVYKVNINGGAPQRITWE  309 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEE--CTTSSCEEEEEETTSSCCEECCCS
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEE--CCCCCcEEEEEECCCCCEEEEecC
Confidence            998776 3   3  3599999988765 45666777788999999998776654  2344  677789888777777778


Q ss_pred             CCceeEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC---eEEEEE
Q 014007          258 DSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG---TVHVFN  331 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd  331 (432)
                      ...+.+++|+|+|++|++++.+   .. |++||+.+++.. .+..  + ..+.+++|+|||++|++++.++   .|++||
T Consensus       310 ~~~~~~~~~spdG~~l~~~~~~~g~~~-i~~~d~~~~~~~-~l~~--~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d  384 (415)
T 2hqs_A          310 GSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLSS--T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVS  384 (415)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEE-EEEEETTTCCEE-ECCC--S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             CCcccCeEECCCCCEEEEEECcCCceE-EEEEECCCCCEE-EecC--C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence            8889999999999999988865   46 999999988874 3432  3 3799999999999999988766   799999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007          332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (432)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  392 (432)
                      +....                                    ...+..|.+.|..++|+|.-
T Consensus       385 ~~g~~------------------------------------~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          385 TDGRF------------------------------------KARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             TTSCC------------------------------------EEECCCSSSEEEEEEECCCC
T ss_pred             CCCCc------------------------------------EEEeeCCCCCCcCCcccccc
Confidence            87554                                    34566788899999999954

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=1.7e-23  Score=191.08  Aligned_cols=266  Identities=14%  Similarity=0.116  Sum_probs=202.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc--------CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCC
Q 014007           84 PPPTLLHISFNQDHGCFAAGT--------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYP  154 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~--------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~  154 (432)
                      ....+..++|+|+|++|++++        ++.|.+||..+++...  .+.  .......+.+++++. ++++...+    
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~--~~~~~~~~~~s~dg~~l~v~~~~~----  110 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ--AIH--NDLKPFGATINNTTQTLWFGNTVN----  110 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE--EEE--ESSCCCSEEEETTTTEEEEEETTT----
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE--EEe--cCCCcceEEECCCCCEEEEEecCC----
Confidence            345788999999999888776        2349999998877653  333  223466788899876 55566666    


Q ss_pred             CCeEEEEeCCCCceeEEeec-CC---------ceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcce
Q 014007          155 LNKVMIWDDHQSRCIGELSF-RS---------EVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGL  219 (432)
Q Consensus       155 ~~~v~iwd~~~~~~~~~~~~-~~---------~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~  219 (432)
                       +.|.+||..+++.+..+.. ..         .+.+++|+|++..++.     ++.|.+||+.+++.+..+..+......
T Consensus       111 -~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          111 -SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG  189 (353)
T ss_dssp             -TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred             -CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence             8999999999998888873 21         2788999999886652     578999999999988888755555778


Q ss_pred             EEEecCCCcEEEEeecCCCCcEEEEEccCCcee-eeec----cCCceeEEEEcCCCCEEEEEcCC-CceEEEEECCCCce
Q 014007          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMA----HDSRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTL  293 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~----~~~~i~~~~~sp~~~~l~~~~~d-g~~i~vwd~~~~~~  293 (432)
                      ++|+|+++.++++.   .++.|.+||..+.... .+..    +...+..++|+|+|++|++++.+ +. |.+||+.+++.
T Consensus       190 ~~~s~dg~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~  265 (353)
T 3vgz_A          190 LALDSEGKRLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNI  265 (353)
T ss_dssp             CEEETTTTEEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCE
T ss_pred             EEECCCCCEEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcE
Confidence            99999999876653   5899999999886544 3332    45568899999999987776654 77 99999999999


Q ss_pred             EEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee
Q 014007          294 LQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS  372 (432)
Q Consensus       294 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (432)
                      +..+..+   . ...++|+|+|++++++. .++.|.+||+.+++.+                                  
T Consensus       266 ~~~~~~~---~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~----------------------------------  307 (353)
T 3vgz_A          266 LAKVAAP---E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV----------------------------------  307 (353)
T ss_dssp             EEEEECS---S-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE----------------------------------
T ss_pred             EEEEEcC---C-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE----------------------------------
Confidence            9888853   2 25699999999766655 7899999999887621                                  


Q ss_pred             eEEEEecCCCceEEEEccCCCEEEEEecCC
Q 014007          373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (432)
Q Consensus       373 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  402 (432)
                       ..+..+ ..+..++|+|||++|+++..++
T Consensus       308 -~~~~~~-~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          308 -KTFDTP-THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             -EEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred             -EEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence             122222 3578999999999888877764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=1.9e-23  Score=189.09  Aligned_cols=272  Identities=14%  Similarity=0.099  Sum_probs=193.0

Q ss_pred             EEEcCCCCE-EEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEE-EecCCCCCCCCCCeEEEEeCCCCc
Q 014007           91 ISFNQDHGC-FAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA-LVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        91 ~~~s~~~~~-l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      ..|.+++.+ ++++. ++.|++||.++++.......   +.... .++|++++.. ++++..+     +.|++||+.+++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~   73 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL---GYDFV-DTAITSDCSNVVVTSDFC-----QTLVQIETQLEP   73 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC---CCCEE-EEEECSSSCEEEEEESTT-----CEEEEEECSSSS
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc---cCCcc-eEEEcCCCCEEEEEeCCC-----CeEEEEECCCCc
Confidence            356666665 44555 45599999988876643332   34445 8999999874 4444446     899999999998


Q ss_pred             e-eEEee-cCCceEEEEEecCccEEEe---C-C--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007          168 C-IGELS-FRSEVRSVKLRRDRIIVVL---E-Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (432)
Q Consensus       168 ~-~~~~~-~~~~v~~~~~~~~~~~~~~---d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (432)
                      . ...+. +..+..+++|+|++.+++.   + +  .|.+||+.+++.+..+.... ....++|+|+++.++++.  ..++
T Consensus        74 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~--~~~~  150 (331)
T 3u4y_A           74 PKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILID--RSSA  150 (331)
T ss_dssp             CEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEE--ETTT
T ss_pred             eeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEe--cCCC
Confidence            7 66676 4444444999999998774   2 3  89999999999888776543 447899999998876554  2457


Q ss_pred             c-EEEEEccCCc-e----eeeeccCCceeEEEEcCCCCEEEE-EcCCCceEEEEECCCCce---EEEEEeCCCcCceEEE
Q 014007          240 Q-VRVEHYASKR-T----KFIMAHDSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSL  309 (432)
Q Consensus       240 ~-i~i~d~~~~~-~----~~~~~~~~~i~~~~~sp~~~~l~~-~~~dg~~i~vwd~~~~~~---~~~~~~~~~~~~i~~~  309 (432)
                      . |.+|+++... +    .........+..++|+|+|++|++ +..++. |++||+.+++.   +..+..   ...+..+
T Consensus       151 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~---~~~~~~~  226 (331)
T 3u4y_A          151 NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGT---NNLPGTI  226 (331)
T ss_dssp             TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEEC---SSCCCCE
T ss_pred             ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccC---CCCCceE
Confidence            7 9999987522 1    122244566899999999996655 456788 99999999998   777773   3667899


Q ss_pred             EECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEec----C---C
Q 014007          310 AFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV----E---G  381 (432)
Q Consensus       310 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~  381 (432)
                      +|+|||++|+++. .++.|.+||+.+++...                                 +..+..+    .   .
T Consensus       227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~  273 (331)
T 3u4y_A          227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSF---------------------------------VKSFGHGLLIDPRPLF  273 (331)
T ss_dssp             EECTTSSEEEEECSSEEEEEEEETTTTEEEE---------------------------------EEEEECCCCCCCGGGT
T ss_pred             EECCCCCEEEEEEcCCCEEEEEECCCCceee---------------------------------ecccccccccCCCCcc
Confidence            9999999877665 57889999998876210                                 0011111    1   1


Q ss_pred             CceEEEEccCCCEEEEEec-CCeEEEEEecC
Q 014007          382 SPYIVAFGHQKNTVVILGM-DGSFYRCQFDP  411 (432)
Q Consensus       382 ~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~  411 (432)
                      ....++|+|||++|++++. ++.|.+|+++.
T Consensus       274 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          274 GANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             TCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             cccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            2356899999999876665 66999999865

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=1e-24  Score=198.28  Aligned_cols=202  Identities=12%  Similarity=0.142  Sum_probs=168.2

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEee-cCCceEEEEEec--CccEEEe---CCeE
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEVRSVKLRR--DRIIVVL---EQKI  196 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~~--~~~~~~~---d~~i  196 (432)
                      +|...|.+++|++++..+++++.|     |.|++||+.++    +.+..+. |...|.+++|+|  ++.++++   |+.|
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             ccccceeEEEEcCCCCEEEEeeCC-----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            799999999999999999999999     99999999876    3556666 899999999999  5777773   8999


Q ss_pred             EEEEcCCC---------eeeEEEeeccCCcceEEEecC--CCcEEEEeecCCCCcEEEEEccCCce-eee----------
Q 014007          197 FVYNFADL---------KLLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASKRT-KFI----------  254 (432)
Q Consensus       197 ~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~----------  254 (432)
                      ++||++++         +.+..+..|...+..++|+|+  +..++  + ++.|+.|++||++.... ..+          
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA--C-LGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE--E-EETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE--E-ecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999886         567788889999999999999  66443  3 34899999999987432 111          


Q ss_pred             ---eccCCceeEEEEcCC---CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC----CEEEEEeCC
Q 014007          255 ---MAHDSRIACFALTQD---GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA----QWLAVSSDK  324 (432)
Q Consensus       255 ---~~~~~~i~~~~~sp~---~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~d  324 (432)
                         ..|...+.+++|+|+   +.+|++++.++. +.+|+...++.........|...|.+++|+|++    ++|++++.|
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d  239 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD  239 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence               257889999999997   999999999999 988888777763333333477899999999998    899999999


Q ss_pred             CeEEEEEecCCCC
Q 014007          325 GTVHVFNLKVNSG  337 (432)
Q Consensus       325 g~i~iwd~~~~~~  337 (432)
                      |.|++||++++..
T Consensus       240 g~i~iwd~~~~~~  252 (351)
T 3f3f_A          240 GRIRIFKITEKLS  252 (351)
T ss_dssp             SCEEEEEEEECC-
T ss_pred             CeEEEEeCCCCcC
Confidence            9999999998753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=3.4e-23  Score=188.11  Aligned_cols=273  Identities=10%  Similarity=0.095  Sum_probs=188.1

Q ss_pred             EEEEc-CCcEEEEEcCC-CeeEEEeecccCcceeEEEEeeeCCeEEEecCC-CCCCCCCCeEEEEeCC--CCc--eeEEe
Q 014007          100 FAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVMIWDDH--QSR--CIGEL  172 (432)
Q Consensus       100 l~~~~-~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~~~v~iwd~~--~~~--~~~~~  172 (432)
                      ++++. ++.|++|+++. +.......+.  +...+..++|++++..+++++ .+     +.|.+|++.  +++  .+..+
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~   80 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFAAES   80 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEEEE
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCC-----CeEEEEEecCCCCceeecccc
Confidence            34434 66699999963 3333333343  566778899999987555544 34     899999987  554  34455


Q ss_pred             ecCCceEEEEEecCccEEE-e---CCeEEEEEcC---CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEE
Q 014007          173 SFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (432)
Q Consensus       173 ~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d  245 (432)
                      .....+..++|+|++.+++ .   ++.|.+||+.   ..+.+..+.. ...+..++|+|+++.++++.  ..++.|.+||
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~--~~~~~v~~~d  157 (343)
T 1ri6_A           81 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPA--LKQDRICLFT  157 (343)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEE--GGGTEEEEEE
T ss_pred             ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEec--CCCCEEEEEE
Confidence            5455889999999998765 2   6789999994   3344444443 33577899999998776543  3579999999


Q ss_pred             ccC-Ccee-----eeec-cCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCC--Cce--EEEEEeCC----CcCceEEE
Q 014007          246 YAS-KRTK-----FIMA-HDSRIACFALTQDGQLLATS-STKGTLVRIFNTLD--GTL--LQEVRRGA----DRAEIYSL  309 (432)
Q Consensus       246 ~~~-~~~~-----~~~~-~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~--~~~--~~~~~~~~----~~~~i~~~  309 (432)
                      +.. +.+.     .+.. ....+.+++|+|+|++|+++ ..++. |++||+..  ++.  ...+....    ....+..+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence            987 5443     2222 34578899999999977555 47888 99999953  443  33333111    12357789


Q ss_pred             EECCCCCEEEEE-eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEE
Q 014007          310 AFSSNAQWLAVS-SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF  388 (432)
Q Consensus       310 ~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  388 (432)
                      +|+|+|++|+++ ..++.|++||+......                               ...+..+..+.. +..++|
T Consensus       237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-------------------------------~~~~~~~~~~~~-~~~~~~  284 (343)
T 1ri6_A          237 HITPDGRHLYACDRTASLITVFSVSEDGSV-------------------------------LSKEGFQPTETQ-PRGFNV  284 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCC-------------------------------EEEEEEEECSSS-CCCEEE
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEcCCCCc-------------------------------eEEeeeecCCCc-cceEEE
Confidence            999999988754 47999999999842100                               001223333433 889999


Q ss_pred             ccCCCEEEEEe-cCCeEEEEEecCCCCC
Q 014007          389 GHQKNTVVILG-MDGSFYRCQFDPVNGG  415 (432)
Q Consensus       389 s~~~~~l~~~~-~dg~v~iw~~~~~~~~  415 (432)
                      +|+|++|++++ .++.|.+|+++..+|+
T Consensus       285 s~dg~~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          285 DHSGKYLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             CTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence            99999988888 5899999999887653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=7.4e-24  Score=192.00  Aligned_cols=269  Identities=11%  Similarity=0.029  Sum_probs=195.9

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcce-eEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCceeEEeec
Q 014007           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI-GVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (432)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~  174 (432)
                      ++|+++. ++.|++||+.+++......+  ++.. .+..++|++++. +++++..+     +.|.+||+.+++.+..+..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI--ADAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC--TTCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc--CCCCCCccceEEcCCCCEEEEEeCCC-----CeEEEEECCCCCeEeeEEc
Confidence            3566666 55699999988876533332  2221 467788999984 45666666     8999999999998887774


Q ss_pred             CC------ceEEEEEecCccEEE-e--------------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007          175 RS------EVRSVKLRRDRIIVV-L--------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       175 ~~------~v~~~~~~~~~~~~~-~--------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      ..      .+.+++|+|++.+++ .              ++.|.+||+.+++.+..+.. ...+..++|+|+++.++++ 
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-  152 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL-  152 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE-
T ss_pred             CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe-
Confidence            33      678999999997665 3              38999999999888877765 4456788999999877654 


Q ss_pred             ecCCCCcEEEEEccCCceee-eeccCCceeEEEEcCCCCEEEEEcCCC------------------------ceEEEEEC
Q 014007          234 PGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKG------------------------TLVRIFNT  288 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg------------------------~~i~vwd~  288 (432)
                          ++.|.+||+.++.... +..+. ....+.|+|+|++|+..+..+                        . |.+||+
T Consensus       153 ----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~d~  226 (337)
T 1pby_B          153 ----GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG-LLTMDL  226 (337)
T ss_dssp             ----SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE-EEEEET
T ss_pred             ----CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc-eEEEeC
Confidence                4789999998865543 33222 112337899998776555433                        3 689999


Q ss_pred             CCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceee
Q 014007          289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS  368 (432)
Q Consensus       289 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (432)
                      .+++.. .+....+...+.+++|+|||++|+++  ++.|++||+.+++.                               
T Consensus       227 ~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~-------------------------------  272 (337)
T 1pby_B          227 ETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS-------------------------------  272 (337)
T ss_dssp             TTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE-------------------------------
T ss_pred             CCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcC-------------------------------
Confidence            999876 44333355678899999999999888  79999999988752                               


Q ss_pred             cceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007          369 SEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY  422 (432)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~  422 (432)
                          +..+.. ...+.+++|+|||++|++++.++.|++|++  .+++.+..++.
T Consensus       273 ----~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~--~~~~~~~~~~~  319 (337)
T 1pby_B          273 ----IKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDA--ETLEKKGQVDL  319 (337)
T ss_dssp             ----EEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEET--TTCCEEEEEEC
T ss_pred             ----cceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEEC--cCCcEEEEEEc
Confidence                112222 245789999999999999999999999876  44555555443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=5.1e-25  Score=220.75  Aligned_cols=287  Identities=10%  Similarity=0.014  Sum_probs=199.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcce---eEEEEeeeCCeEEEecCCCCCCC----CCCeEE
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCNILALVGGGPDPQY----PLNKVM  159 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~s~~~d~~~----~~~~v~  159 (432)
                      .+.+++|+|||++++++.++.|++||+.+++..  ..+. ++..   .+..++|+|++..++++..+..-    ..+.|+
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~--~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTST--VLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCE--EEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEE--EEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            467789999999887755667999999887765  3333 3333   48899999999988877543110    127899


Q ss_pred             EEeCCCCceeEEee----cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCc----------------
Q 014007          160 IWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK----------------  217 (432)
Q Consensus       160 iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~----------------  217 (432)
                      +||+.+++. ..+.    +...+..++|+|||+.++  .++.|++||+.+++..+....+...+                
T Consensus        95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            999998876 3333    334488999999998887  48899999999887765554433333                


Q ss_pred             --ceEEEecCCCcEEEEeecC-------------------------------CCCcEEEEEccCCce-eeeecc------
Q 014007          218 --GLCAVSQGVGSLVLVCPGL-------------------------------QKGQVRVEHYASKRT-KFIMAH------  257 (432)
Q Consensus       218 --~~~~~~~~~~~~~~~~~g~-------------------------------~d~~i~i~d~~~~~~-~~~~~~------  257 (432)
                        ..++|+|||+.++++....                               .+..|++||+.++.. ..+..+      
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence              6799999999877654221                               012799999988663 555443      


Q ss_pred             CCceeEEEEcCCCCEEEEEcCC----CceEEEEECCCCceEEEEEeCCCcCce----EEEEECCCCCEEEEE--eCCC--
Q 014007          258 DSRIACFALTQDGQLLATSSTK----GTLVRIFNTLDGTLLQEVRRGADRAEI----YSLAFSSNAQWLAVS--SDKG--  325 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~d----g~~i~vwd~~~~~~~~~~~~~~~~~~i----~~~~~s~~~~~l~~~--~~dg--  325 (432)
                      ...+..++|+|||++|++....    .. |++||+.++++...+..+ +...+    ..++|+|||+.|+..  ..++  
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  331 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence            6779999999999988776533    46 999999999887766543 22333    378999999977754  4666  


Q ss_pred             ----eEEEEEe-cCCCC--CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce-EEEEccCCCEEEE
Q 014007          326 ----TVHVFNL-KVNSG--SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY-IVAFGHQKNTVVI  397 (432)
Q Consensus       326 ----~i~iwd~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~  397 (432)
                          .|++||+ .+++.  ....                                   ..+...+. .++|+|||+.|+.
T Consensus       332 ~~~~~l~~~d~~~~~~~~~~~~l-----------------------------------~~~~~~~~~~~~~spdg~~l~~  376 (723)
T 1xfd_A          332 GKFYHITVSSSQPNSSNDNIQSI-----------------------------------TSGDWDVTKILAYDEKGNKIYF  376 (723)
T ss_dssp             SCEEEEEEECSSCCSSSCCCCBS-----------------------------------CCSSSCEEEEEEEETTTTEEEE
T ss_pred             cceeEEEEEeccCCCCccceeEe-----------------------------------ecCCeEEEeeeEEcCCCCEEEE
Confidence                4666663 33320  1110                                   11111233 3799999999987


Q ss_pred             EecC---CeEEEEEecCCCC
Q 014007          398 LGMD---GSFYRCQFDPVNG  414 (432)
Q Consensus       398 ~~~d---g~v~iw~~~~~~~  414 (432)
                      .+.+   +.++||.++...+
T Consensus       377 ~~~~~~~~~~~l~~~~~~~~  396 (723)
T 1xfd_A          377 LSTEDLPRRRQLYSANTVGN  396 (723)
T ss_dssp             EESSSCTTCCEEEEECSSTT
T ss_pred             EEcCCCCcceEEEEEeCCCC
Confidence            6665   8899999987543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=1.9e-22  Score=183.81  Aligned_cols=270  Identities=11%  Similarity=0.065  Sum_probs=182.7

Q ss_pred             CCcEEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEEEecCC--CCCCCCCCeEEEEeCCCCc--eeEEee-cCCc
Q 014007          105 DHGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGG--PDPQYPLNKVMIWDDHQSR--CIGELS-FRSE  177 (432)
Q Consensus       105 ~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~--~d~~~~~~~v~iwd~~~~~--~~~~~~-~~~~  177 (432)
                      +++|.+|.++.  ++.......  .+......++|++++.+++++.  .+     +.|++||+.+++  .+..+. +...
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~--~~~~~p~~~a~spdg~l~~~~~~~~~-----~~v~~~~~~~g~~~~~~~~~~~~~~   87 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLL--AATQNPTYLALSAKDCLYSVDKEDDE-----GGIAAWQIDGQTAHKLNTVVAPGTP   87 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEE--EECSCCCCEEECTTCEEEEEEEETTE-----EEEEEEEEETTEEEEEEEEEEESCC
T ss_pred             CCCEEEEEEcCCCCeEEEeeee--eccCCcceEEEccCCeEEEEEecCCC-----ceEEEEEecCCcEEEeeeeecCCCC
Confidence            34588887754  443322223  2445667789999998444443  25     899999997765  344433 6778


Q ss_pred             eEEEEEecCccEEEe----CCeEEEEEcCC-C--eeeEEEeecc---------CCcceEEEecCCCcEEEEeecCCCCcE
Q 014007          178 VRSVKLRRDRIIVVL----EQKIFVYNFAD-L--KLLHQIETIA---------NPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       178 v~~~~~~~~~~~~~~----d~~i~i~d~~~-~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (432)
                      +..++|+|++++++.    ++.|.+|++.. +  +.+..+....         ..+..++|+|+++ ++++  +..++.|
T Consensus        88 p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~--~~~~~~v  164 (347)
T 3hfq_A           88 PAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI--DLGSDKV  164 (347)
T ss_dssp             CSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE--ETTTTEE
T ss_pred             CEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE--eCCCCEE
Confidence            899999999987662    68999999963 3  2333332211         1255799999998 5443  3467899


Q ss_pred             EEEEcc-CCceeee---ec-cCCceeEEEEcCCCCEEEE-EcCCCceEEEEECCC--Cce--EEEEEeCCC----cCceE
Q 014007          242 RVEHYA-SKRTKFI---MA-HDSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLD--GTL--LQEVRRGAD----RAEIY  307 (432)
Q Consensus       242 ~i~d~~-~~~~~~~---~~-~~~~i~~~~~sp~~~~l~~-~~~dg~~i~vwd~~~--~~~--~~~~~~~~~----~~~i~  307 (432)
                      .+|++. .+.+...   .. ....+..++|+|||++|++ +..++. |++|++..  ++.  +..+.....    ...+.
T Consensus       165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  243 (347)
T 3hfq_A          165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ-IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAA  243 (347)
T ss_dssp             EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEE
T ss_pred             EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCceEEeeeeeecCCCCCCCCcce
Confidence            999998 4443322   22 2336788999999996666 456777 99999874  543  223332111    13588


Q ss_pred             EEEECCCCCEEE-EEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE
Q 014007          308 SLAFSSNAQWLA-VSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV  386 (432)
Q Consensus       308 ~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  386 (432)
                      .++|+|||++|+ +...++.|.+|++......                                ..+..+..+...+..+
T Consensus       244 ~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~--------------------------------~~~~~~~~~~~~~~~~  291 (347)
T 3hfq_A          244 AIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL--------------------------------TLIQQISTEGDFPRDF  291 (347)
T ss_dssp             EEEECTTSCEEEEEEETTTEEEEEEECGGGCE--------------------------------EEEEEEECSSSCCCEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEECCCCcE--------------------------------EEeEEEecCCCCcCeE
Confidence            999999999875 4556899999999742110                                0133445555668899


Q ss_pred             EEccCCCEEEEEecC-CeEEEEEecCCCCCcc
Q 014007          387 AFGHQKNTVVILGMD-GSFYRCQFDPVNGGEM  417 (432)
Q Consensus       387 ~~s~~~~~l~~~~~d-g~v~iw~~~~~~~~~~  417 (432)
                      +|+|||++|++++.+ +.|.+|+++..+|+..
T Consensus       292 ~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          292 DLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            999999999888765 8999999998777543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=7.2e-24  Score=211.84  Aligned_cols=282  Identities=11%  Similarity=0.075  Sum_probs=195.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCee--EEEeecccC-------------cceeEEEEeeeCCeEEEecCCCCC
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE--IFRRDFERG-------------GGIGVVEMLFRCNILALVGGGPDP  151 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~--~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~s~~~d~  151 (432)
                      .+..+.|.  |..++++.+++| +||+.+++.  .........             +...+..++|++++.++++.+   
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~---  100 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQ---  100 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEET---
T ss_pred             cCCCCcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEEC---
Confidence            45557888  555565555559 999988765  322211100             014689999999965555543   


Q ss_pred             CCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCC-----CeeeEEEeeccCC--------
Q 014007          152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFAD-----LKLLHQIETIANP--------  216 (432)
Q Consensus       152 ~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~-----~~~~~~~~~~~~~--------  216 (432)
                          +.|++||+.+++......+...+.+++|+|||+.++  .++.|++||+.+     ++...........        
T Consensus       101 ----~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  176 (706)
T 2z3z_A          101 ----GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH  176 (706)
T ss_dssp             ----TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred             ----CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence                899999999887766666778899999999998887  489999999988     7665443333222        


Q ss_pred             ------cceEEEecCCCcEEEEee------------------------------cCCCCcEEEEEccCCceeeee---cc
Q 014007          217 ------KGLCAVSQGVGSLVLVCP------------------------------GLQKGQVRVEHYASKRTKFIM---AH  257 (432)
Q Consensus       217 ------~~~~~~~~~~~~~~~~~~------------------------------g~~d~~i~i~d~~~~~~~~~~---~~  257 (432)
                            +..+.|+|||+.++++..                              ...+..|.+||+.++....+.   .|
T Consensus       177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  256 (706)
T 2z3z_A          177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK  256 (706)
T ss_dssp             GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred             hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence                  478999999998776541                              113467999999887655443   56


Q ss_pred             CCceeEEEEcCCCCEEEEEcCCC-----ceEEEEECCCCceEEEEEeCCCcC---ceEEEEECC--CCCEEEEEeCCCeE
Q 014007          258 DSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRA---EIYSLAFSS--NAQWLAVSSDKGTV  327 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~dg-----~~i~vwd~~~~~~~~~~~~~~~~~---~i~~~~~s~--~~~~l~~~~~dg~i  327 (432)
                      ...+.+++|+|||++|++++.++     . |++||+.+++....+....+..   .+..++|+|  ||++|++++.||.+
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~-v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~  335 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECK-VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN  335 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEE-EEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeE-EEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence            77899999999999999987775     7 9999999984444443211222   246789999  99999999999999


Q ss_pred             EEEEec-CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE-EEEccCCCEEEEEecC-C--
Q 014007          328 HVFNLK-VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI-VAFGHQKNTVVILGMD-G--  402 (432)
Q Consensus       328 ~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d-g--  402 (432)
                      +||++. +++.                                   +..+..+...+.. ++|+|||+.|+.++.+ +  
T Consensus       336 ~l~~~~~~~~~-----------------------------------~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~  380 (706)
T 2z3z_A          336 HLYLYDTTGRL-----------------------------------IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPL  380 (706)
T ss_dssp             EEEEEETTSCE-----------------------------------EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTT
T ss_pred             EEEEEECCCCE-----------------------------------EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCc
Confidence            999987 3321                                   2233345555665 7999999988766654 3  


Q ss_pred             eEEEEEecCCCC
Q 014007          403 SFYRCQFDPVNG  414 (432)
Q Consensus       403 ~v~iw~~~~~~~  414 (432)
                      .+.||.++...+
T Consensus       381 ~~~l~~~d~~~~  392 (706)
T 2z3z_A          381 ERHFYCIDIKGG  392 (706)
T ss_dssp             CBEEEEEETTCC
T ss_pred             eEEEEEEEcCCC
Confidence            366676766544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=3.2e-24  Score=198.86  Aligned_cols=225  Identities=13%  Similarity=0.051  Sum_probs=146.9

Q ss_pred             ccCCCCCCCeEEEEEcC--------CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe-EEEecCC
Q 014007           79 STSSSPPPTLLHISFNQ--------DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGG  148 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~--------~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~  148 (432)
                      ..+.+|.+.|++++|+|        |+++||+|+ |++|+|||+.+..... ..+  .|...+.+++|+|++ ..+++++
T Consensus       130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~-~~~--~~~~~v~~v~~~p~~~~~l~~~~  206 (393)
T 4gq1_A          130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL-AGY--PLSSPGISVQFRPSNPNQLIVGE  206 (393)
T ss_dssp             CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE-EEE--ECSSCEEEEEEETTEEEEEEEEE
T ss_pred             cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee-eec--CCCCCcEEEEECCCCCceEEecC
Confidence            35788999999999998        889999998 5559999998776552 223  477889999999987 4799999


Q ss_pred             CCCCCCCCeEEEEeCCCCceeEEee-cCCceE--EEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEEe-c
Q 014007          149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVR--SVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVS-Q  224 (432)
Q Consensus       149 ~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~--~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~  224 (432)
                      .|     ++|++||+.+++...... +.....  .+.+....                .........+...+..+.|. +
T Consensus       207 ~d-----~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~----------------~~~~~~~~~~~~~v~~v~~~~~  265 (393)
T 4gq1_A          207 RN-----GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP----------------LVNTCHSSGIASSLANVRWIGS  265 (393)
T ss_dssp             TT-----SEEEEEETTCCC----------CSCCCSEEEESGG----------------GC------CCSSSCSEEEEETT
T ss_pred             CC-----CEEEEEECCCCcccccccccCCcccceEEeccccc----------------ceeeeecccccccceeeeeecC
Confidence            99     999999999887665544 221111  11111111                01111223566778888887 6


Q ss_pred             CCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEE------------------EEcC--CCCEEEEEcCCCceE
Q 014007          225 GVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACF------------------ALTQ--DGQLLATSSTKGTLV  283 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~------------------~~sp--~~~~l~~~~~dg~~i  283 (432)
                      ++..++   +++.|+.+++||+.... ...+..|...+..+                  .|+|  ++.++++|+.|+. |
T Consensus       266 dg~~l~---s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~-V  341 (393)
T 4gq1_A          266 DGSGIL---AMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL-I  341 (393)
T ss_dssp             TTCEEE---EECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE-E
T ss_pred             CCCEEE---EEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCE-E
Confidence            776543   23589999999997633 22233333333222                  3333  4456778899999 9


Q ss_pred             EEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      ++||+.+++++..+..  |..+|.+++|+|||++||+++++| +.+|.+..
T Consensus       342 ~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          342 QLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             EEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred             EEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence            9999999998887775  457999999999999999998665 77777654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=8.1e-24  Score=187.82  Aligned_cols=248  Identities=9%  Similarity=-0.000  Sum_probs=187.5

Q ss_pred             CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC-CceeEEee-c-CCceEEE
Q 014007          105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELS-F-RSEVRSV  181 (432)
Q Consensus       105 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~-~~~~~~~~-~-~~~v~~~  181 (432)
                      ++.|++||+.+++..  ...  .+...+.++.|+|++..++++. +     +.|++||+.+ ++...... + ...+.++
T Consensus        21 ~~~i~~~d~~~~~~~--~~~--~~~~~v~~~~~spdg~~l~~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~   90 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMR--VVW--QTPELFEAPNWSPDGKYLLLNS-E-----GLLYRLSLAGDPSPEKVDTGFATICNNDH   90 (297)
T ss_dssp             CEEEEEEETTTTEEE--EEE--EESSCCEEEEECTTSSEEEEEE-T-----TEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred             ceeEEEEeCCCCcee--eec--cCCcceEeeEECCCCCEEEEEc-C-----CeEEEEeCCCCCCceEeccccccccccce
Confidence            344999999887655  223  3677899999999999888876 4     8999999998 87766665 3 4788999


Q ss_pred             EEecCccEEEe-----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc--CCcee
Q 014007          182 KLRRDRIIVVL-----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTK  252 (432)
Q Consensus       182 ~~~~~~~~~~~-----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~  252 (432)
                      +|+|++.+++.     ++  .|..+++.+++ ...+..+ ..+..++|+|+++.++++.  ..++.+.+|+++  ++...
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~--~~~~~~~l~~~~~~~~~~~  166 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCG--IRDQVFDIYSMDIDSGVET  166 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEE--EETTEEEEEEEETTTCCEE
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEE--CCCCceEEEEEECCCCcce
Confidence            99999998873     13  45555555544 3344333 3477789999998776543  367888898864  46666


Q ss_pred             eeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECC-CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC------
Q 014007          253 FIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK------  324 (432)
Q Consensus       253 ~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------  324 (432)
                      .+..+...+.+++|+|+|++|++++ .++. +++|++. .+..+..+..  +...+..++|+|+|++|++++.+      
T Consensus       167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~  243 (297)
T 2ojh_A          167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDH  243 (297)
T ss_dssp             ECCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred             EcccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence            7778888999999999999887766 5888 9999886 4555556553  45678999999999999988765      


Q ss_pred             -----CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe
Q 014007          325 -----GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG  399 (432)
Q Consensus       325 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  399 (432)
                           +.|++||+.+++..                                 .+..+..|.+.+..++|+|++++|++++
T Consensus       244 ~~~~~~~l~~~d~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          244 PRDLDVRVQLMDMDGGNVE---------------------------------TLFDLFGGQGTMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             CSSEEEEEEEEETTSCSCE---------------------------------EEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred             cccCceEEEEEecCCCCce---------------------------------eeeccCCCCcccccceECCCCCEEEEEE
Confidence                 56999999876521                                 1334557788899999999999999887


Q ss_pred             cCC
Q 014007          400 MDG  402 (432)
Q Consensus       400 ~dg  402 (432)
                      .+.
T Consensus       291 ~~~  293 (297)
T 2ojh_A          291 YFP  293 (297)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            763

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.92  E-value=2.2e-23  Score=203.47  Aligned_cols=270  Identities=9%  Similarity=-0.009  Sum_probs=193.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCC---CCCCCCCeEE
Q 014007           85 PPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQYPLNKVM  159 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~~~~~~v~  159 (432)
                      ..+|++++|+|||+.||+++  ++.++||++++++..   .+..++...+..+.|+|+ ..+++++.   +     ....
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~---~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~-----~~~~   91 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV---KLNREPINSVLDPHYGVG-RVILVRDVSKGA-----EQHA   91 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE---ECCSSCCSEECEECTTCS-EEEEEEECSTTS-----CCEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE---eeecccccccccccCCCC-eEEEEeccCCCC-----cceE
Confidence            45799999999999999876  455999998766543   333234468889999999 55554432   3     4445


Q ss_pred             EEeCCC---CceeEEeecCCceEEEEEecCccE--EEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          160 IWDDHQ---SRCIGELSFRSEVRSVKLRRDRII--VVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       160 iwd~~~---~~~~~~~~~~~~v~~~~~~~~~~~--~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      +|.+..   +... .+.....+...+|+|++..  +++  ++.+.+||+.+++........ .  ..++|+|||+.++.+
T Consensus        92 l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~  167 (582)
T 3o4h_A           92 LFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGL  167 (582)
T ss_dssp             EEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEE
T ss_pred             EEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEE
Confidence            544332   3322 4443334556788888753  332  556679999988765544332 2  689999999977654


Q ss_pred             eecC-CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCC--ceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007          233 CPGL-QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (432)
Q Consensus       233 ~~g~-~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg--~~i~vwd~~~~~~~~~~~~~~~~~~i~~~  309 (432)
                      .... ..+.|++||+.++....+..|...+..++|+|||++|+++..++  . |++||+.+++.. .+..  +...+..+
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~~--~~~~~~~~  243 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLEL--PSKDFSSY  243 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECCC--SCSHHHHH
T ss_pred             EEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-EccC--CCcChhhh
Confidence            4211 12679999999988888889999999999999999999888888  7 999999998877 4443  44556666


Q ss_pred             E--------ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007          310 A--------FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG  381 (432)
Q Consensus       310 ~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (432)
                      +        |+|||.++++++.++++++|++  ++..                                      ..+.+
T Consensus       244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~--------------------------------------~~~~~  283 (582)
T 3o4h_A          244 RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV--------------------------------------EAPQG  283 (582)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE--------------------------------------CCCSS
T ss_pred             hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee--------------------------------------ccCCC
Confidence            6        9999998999999999999999  4411                                      02234


Q ss_pred             CceEEEEccCCCEEEEEecCCe-EEEEEecCC
Q 014007          382 SPYIVAFGHQKNTVVILGMDGS-FYRCQFDPV  412 (432)
Q Consensus       382 ~v~~~~~s~~~~~l~~~~~dg~-v~iw~~~~~  412 (432)
                      .|..++|+ +++++++++.+.. -.+|.++..
T Consensus       284 ~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          284 NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             ceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence            57889999 9999998888754 455555543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=3.3e-23  Score=207.02  Aligned_cols=276  Identities=10%  Similarity=0.032  Sum_probs=198.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      ...|.+++|+|| +.++.+.++.|++||+.+++...  ..  .+...+..+.|+|++..++.. .+     +.|++||+.
T Consensus        81 ~~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~--l~--~~~~~~~~~~~SpdG~~la~~-~~-----~~i~v~~~~  149 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTY--LF--DTNEETASLDFSPVGDRVAYV-RN-----HNLYIARGG  149 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEE--EE--CCTTCCTTCEECTTSSEEEEE-ET-----TEEEEEECB
T ss_pred             ccCceeEEECCC-CeEEEEECCEEEEEECCCCceEE--cc--CCcccccCCcCCCCCCEEEEE-EC-----CeEEEEecC
Confidence            367999999999 77777777779999998876542  22  245567788999999888875 45     899999998


Q ss_pred             C-----CceeEEee-cCCc--------------eEEEEEecCccEEEe---C----------------------------
Q 014007          165 Q-----SRCIGELS-FRSE--------------VRSVKLRRDRIIVVL---E----------------------------  193 (432)
Q Consensus       165 ~-----~~~~~~~~-~~~~--------------v~~~~~~~~~~~~~~---d----------------------------  193 (432)
                      +     ++...... +...              +.++.|+|||+++++   |                            
T Consensus       150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g  229 (706)
T 2z3z_A          150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG  229 (706)
T ss_dssp             CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred             cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence            8     77665444 2222              589999999998873   1                            


Q ss_pred             -----CeEEEEEcCCCeeeEEEe--eccCCcceEEEecCCCcEEEEeecC--CCCcEEEEEccCC-ceeeee--ccCC--
Q 014007          194 -----QKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCPGL--QKGQVRVEHYASK-RTKFIM--AHDS--  259 (432)
Q Consensus       194 -----~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~--~d~~i~i~d~~~~-~~~~~~--~~~~--  259 (432)
                           ..|++||+.+++......  .+...+..++|+|+|+.++++....  ....|.+||+.++ ....+.  .+..  
T Consensus       230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence                 469999999887644332  2345577899999999776654211  1248999999887 554443  2222  


Q ss_pred             -ceeEEEEcC--CCCEEEEEcCCCceEEEEECC-CCceEEEEEeCCCcCceEE-EEECCCCCEEEEEeC-CC----eEEE
Q 014007          260 -RIACFALTQ--DGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYS-LAFSSNAQWLAVSSD-KG----TVHV  329 (432)
Q Consensus       260 -~i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~-dg----~i~i  329 (432)
                       .+.+++|+|  +|++|++++.++. ++||++. +++.+..+..  +...+.. ++|+|+|+.|+.++. ++    .|+.
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~  386 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC  386 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred             CccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence             246789999  9999999999998 9999876 6677776654  4456776 799999998876654 43    5666


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecC----CeEE
Q 014007          330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD----GSFY  405 (432)
Q Consensus       330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~v~  405 (432)
                      ||+.+++.                                    ..+ .+...+..++|+|||++|+.++.+    +.|+
T Consensus       387 ~d~~~~~~------------------------------------~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~  429 (706)
T 2z3z_A          387 IDIKGGKT------------------------------------KDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVT  429 (706)
T ss_dssp             EETTCCCC------------------------------------EES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEE
T ss_pred             EEcCCCCc------------------------------------eec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEE
Confidence            66665441                                    011 144568899999999998876554    5699


Q ss_pred             EEEecC
Q 014007          406 RCQFDP  411 (432)
Q Consensus       406 iw~~~~  411 (432)
                      +|+++.
T Consensus       430 l~d~~~  435 (706)
T 2z3z_A          430 VTNIGK  435 (706)
T ss_dssp             EEESSS
T ss_pred             EEECCC
Confidence            988743

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.92  E-value=4e-23  Score=191.24  Aligned_cols=290  Identities=12%  Similarity=-0.004  Sum_probs=198.7

Q ss_pred             cccCCCCCCCeEE-----EEEcCCCCEEEEEcC-Cc---EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC
Q 014007           78 ESTSSSPPPTLLH-----ISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (432)
Q Consensus        78 ~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~-~~---i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~  148 (432)
                      ...+..|......     .+|+|||++|+.+++ ++   |.+|++++++..  .... ++...+....|+|++..|+...
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--~lt~-~~~~~~~~~~~spdg~~l~~~~   99 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT--QLTE-GRGDNTFGGFLSPDDDALFYVK   99 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE--ECCC-SSCBCSSSCEECTTSSEEEEEE
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE--Eeee-CCCCCccceEEcCCCCEEEEEe
Confidence            3444555555555     789999999888874 44   888888877654  2222 3444444677999998888887


Q ss_pred             CCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEE--EecCccEEEe-------------------------CCeEEEEE
Q 014007          149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVK--LRRDRIIVVL-------------------------EQKIFVYN  200 (432)
Q Consensus       149 ~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~~~~~~-------------------------d~~i~i~d  200 (432)
                      .+     +.|++||+.+++....+. +...+....  +++++.+++.                         +..|++||
T Consensus       100 ~~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  174 (388)
T 3pe7_A          100 DG-----RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD  174 (388)
T ss_dssp             TT-----TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred             CC-----CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence            77     899999999998777666 444443333  4889888761                         25799999


Q ss_pred             cCCCeeeEEEeeccCCcceEEEec-CCCcEEEEeecCC---CCcEEEEEccCCceeeeeccC--CceeEEEEcCCCCEEE
Q 014007          201 FADLKLLHQIETIANPKGLCAVSQ-GVGSLVLVCPGLQ---KGQVRVEHYASKRTKFIMAHD--SRIACFALTQDGQLLA  274 (432)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~  274 (432)
                      +.+++.. .+..+...+..+.|+| +++.++++..+..   ...|.++|..++....+..+.  ..+..++|+|||+.|+
T Consensus       175 ~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~  253 (388)
T 3pe7_A          175 LKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALV  253 (388)
T ss_dssp             TTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEE
T ss_pred             CCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEE
Confidence            9988654 3444556678899999 9987766653211   447888888877766666555  3578899999999876


Q ss_pred             EEcC-C----CceEEEEECCCCceEEEEEeCCCcC---ceEEEEECCCCCEEEEE---------eCCCeEEEEEecCCCC
Q 014007          275 TSST-K----GTLVRIFNTLDGTLLQEVRRGADRA---EIYSLAFSSNAQWLAVS---------SDKGTVHVFNLKVNSG  337 (432)
Q Consensus       275 ~~~~-d----g~~i~vwd~~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~~~  337 (432)
                      ..+. +    .. |++||+.+++.........+..   ....+.|+|||+.|+..         ..+..|++||+.+++ 
T Consensus       254 ~~~~~~~~~~~~-l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-  331 (388)
T 3pe7_A          254 YVSYLKGSPDRF-IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT-  331 (388)
T ss_dssp             EEEEETTCCCEE-EEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE-
T ss_pred             EEecCCCCCcce-EEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc-
Confidence            6443 2    24 9999999987543333211000   01123799999988754         456689999998865 


Q ss_pred             CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC-----------CceEEEEccCCCEEEEEe-cCCeEE
Q 014007          338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-----------SPYIVAFGHQKNTVVILG-MDGSFY  405 (432)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~-~dg~v~  405 (432)
                                                         ...+..+..           .+..++|+|||+.|+.++ .+|...
T Consensus       332 -----------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~  376 (388)
T 3pe7_A          332 -----------------------------------QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPA  376 (388)
T ss_dssp             -----------------------------------EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred             -----------------------------------eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCcee
Confidence                                               223444444           578899999999888665 478888


Q ss_pred             EEEecCCC
Q 014007          406 RCQFDPVN  413 (432)
Q Consensus       406 iw~~~~~~  413 (432)
                      ||.++...
T Consensus       377 l~~~~l~~  384 (388)
T 3pe7_A          377 LYLATLPE  384 (388)
T ss_dssp             EEEEECCG
T ss_pred             EEEEECCh
Confidence            88887653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=1.4e-22  Score=210.53  Aligned_cols=282  Identities=10%  Similarity=0.029  Sum_probs=209.2

Q ss_pred             cccCCCCCCCe-------EEEEEcCCCCEEEEEcCC-------cEEEEEcCCCeeEEE----------------------
Q 014007           78 ESTSSSPPPTL-------LHISFNQDHGCFAAGTDH-------GFRIYNCDPFREIFR----------------------  121 (432)
Q Consensus        78 ~~~~~~~~~~v-------~~~~~s~~~~~l~~~~~~-------~i~iw~~~~~~~~~~----------------------  121 (432)
                      ...+..|...+       .+++|+|||+++++++.+       .|.+|++.++.....                      
T Consensus        92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~  171 (1045)
T 1k32_A           92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF  171 (1045)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred             eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence            34566788777       999999999977776632       277777765443210                      


Q ss_pred             -------------------------eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC-CceeEEeecC
Q 014007          122 -------------------------RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELSFR  175 (432)
Q Consensus       122 -------------------------~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~-~~~~~~~~~~  175 (432)
                                               ..+ .+|...+..+.|+++ ..+++++.+     +.+.+|.+.. +.....+.+.
T Consensus       172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l-~~~~~~v~~~~~s~d-~l~~~~~~d-----g~~~l~~~~~~g~~~~~l~~~  244 (1045)
T 1k32_A          172 ELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH-RIYFITDID-----GFGQIYSTDLDGKDLRKHTSF  244 (1045)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETT-EEEEEECTT-----SSCEEEEEETTSCSCEECCCC
T ss_pred             CccccccccCCCcCCEEEECCCCCeEEC-cCCCCcccceEEeCC-EEEEEEecc-----CceEEEEEeCCCCcceEecCC
Confidence                                     011 134455667778888 444555566     7888887653 4444555533


Q ss_pred             CceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEee-----------ccCCcceEEEe-cCCCcEEEEeecCCCCcE
Q 014007          176 SEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIET-----------IANPKGLCAVS-QGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       176 ~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~g~~d~~i  241 (432)
                      ..+...+|+|||..++  .++.|++||+... .+..+..           +...+..++|+ |+|+.++++.    ++.|
T Consensus       245 ~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~----~~~i  319 (1045)
T 1k32_A          245 TDYYPRHLNTDGRRILFSKGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS----RGQA  319 (1045)
T ss_dssp             CSSCEEEEEESSSCEEEEETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE----TTEE
T ss_pred             CCcceeeEcCCCCEEEEEeCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE----cCEE
Confidence            4567789999998777  4899999998543 3334433           23357899999 9998776543    6899


Q ss_pred             EEEEccCCceeeeeccCC-ceeEEEEcCCCCEEEEEcCCCceEE-EEECCCCceEEEEEeCCCcCceEEEEECCCCCEEE
Q 014007          242 RVEHYASKRTKFIMAHDS-RIACFALTQDGQLLATSSTKGTLVR-IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA  319 (432)
Q Consensus       242 ~i~d~~~~~~~~~~~~~~-~i~~~~~sp~~~~l~~~~~dg~~i~-vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  319 (432)
                      .+|+...+....+..|.. .+..++|+ +|+.|++++.++. |+ +||+.+++... +.  .+...+..++|+|||++|+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~-l~~~~d~~~~~~~~-l~--~~~~~~~~~~~SpDG~~la  394 (1045)
T 1k32_A          320 FIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGD-FLGIYDYRTGKAEK-FE--ENLGNVFAMGVDRNGKFAV  394 (1045)
T ss_dssp             EEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEE-EEEEEETTTCCEEE-CC--CCCCSEEEEEECTTSSEEE
T ss_pred             EEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCc-eEEEEECCCCCceE-ec--CCccceeeeEECCCCCEEE
Confidence            999999887777777887 89999999 9999999888877 88 99988776543 33  2557899999999999999


Q ss_pred             EEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe
Q 014007          320 VSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG  399 (432)
Q Consensus       320 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  399 (432)
                      +++.++.|++||+.+++.                                   ......|.+.+..++|+|||++|++++
T Consensus       395 ~~~~~~~v~~~d~~tg~~-----------------------------------~~~~~~~~~~v~~~~~SpDG~~la~~~  439 (1045)
T 1k32_A          395 VANDRFEIMTVDLETGKP-----------------------------------TVIERSREAMITDFTISDNSRFIAYGF  439 (1045)
T ss_dssp             EEETTSEEEEEETTTCCE-----------------------------------EEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred             EECCCCeEEEEECCCCce-----------------------------------EEeccCCCCCccceEECCCCCeEEEEe
Confidence            999999999999988762                                   122346788899999999999999887


Q ss_pred             cCC----------eEEEEEecC
Q 014007          400 MDG----------SFYRCQFDP  411 (432)
Q Consensus       400 ~dg----------~v~iw~~~~  411 (432)
                      .++          .|++|+++.
T Consensus       440 ~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          440 PLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EECSSTTCSCCEEEEEEEETTT
T ss_pred             cCccccccCCCCCeEEEEECCC
Confidence            754          899998753

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=5.6e-23  Score=213.59  Aligned_cols=274  Identities=9%  Similarity=0.084  Sum_probs=207.4

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      +..|...+.++.|+++ .+++++. ++.++||.++...... ..+. .+. .+....|++++..++.+. +     +.|+
T Consensus       199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~-~~l~-~~~-~~~~~~~SpDG~~la~~~-~-----~~i~  268 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL-RKHT-SFT-DYYPRHLNTDGRRILFSK-G-----GSIY  268 (1045)
T ss_dssp             EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC-EECC-CCC-SSCEEEEEESSSCEEEEE-T-----TEEE
T ss_pred             CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc-eEec-CCC-CcceeeEcCCCCEEEEEe-C-----CEEE
Confidence            3678999999999998 5555665 4458888875322111 2333 222 345568899998777764 5     8999


Q ss_pred             EEeCCCCceeEEeec------------CCceEEEEEe-cCccEEE--eCCeEEEEEcCCCeeeEEEeeccC-CcceEEEe
Q 014007          160 IWDDHQSRCIGELSF------------RSEVRSVKLR-RDRIIVV--LEQKIFVYNFADLKLLHQIETIAN-PKGLCAVS  223 (432)
Q Consensus       160 iwd~~~~~~~~~~~~------------~~~v~~~~~~-~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~  223 (432)
                      +||+...+ +..+..            ...+.+++|+ |||..++  .++.|++|++..++... +..+.. .+..++|+
T Consensus       269 ~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s  346 (1045)
T 1k32_A          269 IFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD  346 (1045)
T ss_dssp             EECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSCEEEEEECSS
T ss_pred             EecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccCCCcceEEeeeEc
Confidence            99984433 334332            2368999999 9998777  48899999998776543 444555 67788899


Q ss_pred             cCCCcEEEEeecCCCCcEE-EEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC
Q 014007          224 QGVGSLVLVCPGLQKGQVR-VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (432)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~-i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~  302 (432)
                       +++.+++++   .++.+. +||+.++....+..|...+..++|+|||++|++++.++. |++||+.+++....+..  |
T Consensus       347 -dg~~l~~~s---~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~--~  419 (1045)
T 1k32_A          347 -TKVAFIHGT---REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERS--R  419 (1045)
T ss_dssp             -SEEEEEEEE---TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--S
T ss_pred             -CCCeEEEEE---CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccC--C
Confidence             887665543   367888 889988777776688889999999999999999999999 99999999998877754  5


Q ss_pred             cCceEEEEECCCCCEEEEEeCCC----------eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee
Q 014007          303 RAEIYSLAFSSNAQWLAVSSDKG----------TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS  372 (432)
Q Consensus       303 ~~~i~~~~~s~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (432)
                      ...+.+++|||||++|++++.++          .|++||+.+++                                    
T Consensus       420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~------------------------------------  463 (1045)
T 1k32_A          420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK------------------------------------  463 (1045)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE------------------------------------
T ss_pred             CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc------------------------------------
Confidence            67889999999999999887644          89999998765                                    


Q ss_pred             eEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       373 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      ...+..|...+..++|+|||++|++++.++...+|+.
T Consensus       464 ~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          464 IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence            2233445566788999999999999998877777653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.1e-22  Score=204.48  Aligned_cols=273  Identities=9%  Similarity=0.013  Sum_probs=198.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEcCCC---eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPF---REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      ..|.+++|||||++|++++++.|++|++.++   ..   ..+. .+...+..+.|+|++..++.+..      +.|++||
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~---~~l~-~~~~~~~~~~~SPDG~~la~~~~------~~i~~~d  178 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAV---RQLT-HGEGFATDAKLSPKGGFVSFIRG------RNLWVID  178 (741)
T ss_dssp             EESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSC---CBCC-CSSSCEEEEEECTTSSEEEEEET------TEEEEEE
T ss_pred             cCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceE---EEcc-cCCcccccccCCCCCCEEEEEeC------CcEEEEe
Confidence            3488999999999999998877999999876   33   2333 46677899999999998887764      6999999


Q ss_pred             CCCCceeEEee-cCCc----------------eEEEEEecCccEEEe---CC----------------------------
Q 014007          163 DHQSRCIGELS-FRSE----------------VRSVKLRRDRIIVVL---EQ----------------------------  194 (432)
Q Consensus       163 ~~~~~~~~~~~-~~~~----------------v~~~~~~~~~~~~~~---d~----------------------------  194 (432)
                      +.+++...... +...                +.+++|+|||+.++.   |+                            
T Consensus       179 ~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  258 (741)
T 2ecf_A          179 LASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD  258 (741)
T ss_dssp             TTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred             cCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence            99887665544 2222                478999999998773   44                            


Q ss_pred             -----eEEEEEcCC-CeeeEEEe--eccCCcceEEEecCCCcEEEEee--cCCCCcEEEEEccCCceeeee-ccCC----
Q 014007          195 -----KIFVYNFAD-LKLLHQIE--TIANPKGLCAVSQGVGSLVLVCP--GLQKGQVRVEHYASKRTKFIM-AHDS----  259 (432)
Q Consensus       195 -----~i~i~d~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--g~~d~~i~i~d~~~~~~~~~~-~~~~----  259 (432)
                           .|++||+.+ ++......  .+...+..++| |||+.++++..  +..+..|++||+.++....+. .+..    
T Consensus       259 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~  337 (741)
T 2ecf_A          259 ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP  337 (741)
T ss_dssp             CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred             CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence                 789999988 76544332  24456778999 99998876653  224678999999987655443 3332    


Q ss_pred             ceeEEEEcCCCCEEEEEcCCCceEEEEECC-CCceEEEEEeCCCcCceEEE-EECCCCCEEEEE-eCCC--eEEEEEecC
Q 014007          260 RIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSL-AFSSNAQWLAVS-SDKG--TVHVFNLKV  334 (432)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~-~~dg--~i~iwd~~~  334 (432)
                      .+..++|+|||+++++++.++. ++||.+. +++ ...+..  +...+..+ .|+|+|+.|+.. +.++  .++||++..
T Consensus       338 ~~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          338 LHNSLRFLDDGSILWSSERTGF-QHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             CCSCCEECTTSCEEEEECTTSS-CEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             cCCceEECCCCeEEEEecCCCc-cEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            4568999999999999999997 8888765 445 555553  44678787 599999977654 4555  899999975


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecC----CeEEEEEe
Q 014007          335 -NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD----GSFYRCQF  409 (432)
Q Consensus       335 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~v~iw~~  409 (432)
                       +...                                   ..+.. .+.+..++|+|||++|+....+    +.+++|+.
T Consensus       414 ~g~~~-----------------------------------~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          414 QGGQP-----------------------------------QRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             TCCCC-----------------------------------EECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             CCCCe-----------------------------------eeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence             3211                                   11222 3457789999999998876554    46777765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=1.1e-21  Score=178.14  Aligned_cols=238  Identities=11%  Similarity=0.072  Sum_probs=170.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC--CcEEEEEcC--CCeeEEEeecccCcceeEEEEeeeCCeEEEe-cCCCCCCCCCCeE
Q 014007           84 PPPTLLHISFNQDHGCFAAGTD--HGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILALV-GGGPDPQYPLNKV  158 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~--~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-s~~~d~~~~~~~v  158 (432)
                      |...+.+++|+|+|++|++++.  +.|++|+++  +++......+.  ....+..++|++++..++ ++..+     +.|
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~-----~~i  108 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--LPGSLTHISTDHQGQFVFVGSYNA-----GNV  108 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--CSSCCSEEEECTTSSEEEEEETTT-----TEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc--cCCCCcEEEEcCCCCEEEEEecCC-----CeE
Confidence            5667888999999998887774  459999997  55544334443  223778899999987654 44446     899


Q ss_pred             EEEeCC---CCceeEEeecCCceEEEEEecCccEEEe----CCeEEEEEcCC-CeeeE----EEee-ccCCcceEEEecC
Q 014007          159 MIWDDH---QSRCIGELSFRSEVRSVKLRRDRIIVVL----EQKIFVYNFAD-LKLLH----QIET-IANPKGLCAVSQG  225 (432)
Q Consensus       159 ~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~-~~~~~----~~~~-~~~~~~~~~~~~~  225 (432)
                      .+||+.   ..+.+..+.....+.+++|+|++.+++.    ++.|++||+.+ ++...    .+.. ....+..++|+|+
T Consensus       109 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd  188 (343)
T 1ri6_A          109 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  188 (343)
T ss_dssp             EEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             EEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence            999994   4445555555667999999999986662    68999999987 54432    2222 2235567999999


Q ss_pred             CCcEEEEeecCCCCcEEEEEccC--Ccee---eee----cc--CCceeEEEEcCCCCEEEE-EcCCCceEEEEECC--CC
Q 014007          226 VGSLVLVCPGLQKGQVRVEHYAS--KRTK---FIM----AH--DSRIACFALTQDGQLLAT-SSTKGTLVRIFNTL--DG  291 (432)
Q Consensus       226 ~~~~~~~~~g~~d~~i~i~d~~~--~~~~---~~~----~~--~~~i~~~~~sp~~~~l~~-~~~dg~~i~vwd~~--~~  291 (432)
                      ++.++++.  ..++.|.+|+++.  +...   .+.    .+  ...+..++|+|+|++|++ +..++. |++||+.  ++
T Consensus       189 g~~l~~~~--~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~~  265 (343)
T 1ri6_A          189 EQYAYCVN--ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGS  265 (343)
T ss_dssp             SSEEEEEE--TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSC
T ss_pred             CCEEEEEe--CCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCCC
Confidence            98766543  4689999999964  3322   121    11  235678999999988874 557888 9999998  33


Q ss_pred             --ceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007          292 --TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (432)
Q Consensus       292 --~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~  334 (432)
                        +.+..+..+   ..+..++|+|+|++|++++ .++.|.+|+++.
T Consensus       266 ~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          266 VLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             CEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             ceEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence              444445432   3488999999999988887 689999997763

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=1.2e-21  Score=177.23  Aligned_cols=242  Identities=10%  Similarity=0.067  Sum_probs=173.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC---eE
Q 014007           84 PPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN---KV  158 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~---~v  158 (432)
                      +...+ +++|+|+|++|++++  ++.|.+||..+++.. ...+. .+.....+++|++++..++++..+     +   .|
T Consensus        39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~-----~~~~~i  110 (331)
T 3u4y_A           39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VVAIQ-EGQSSMADVDITPDDQFAVTVTGL-----NHPFNM  110 (331)
T ss_dssp             CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EEEEE-ECSSCCCCEEECTTSSEEEECCCS-----SSSCEE
T ss_pred             cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EEecc-cCCCCccceEECCCCCEEEEecCC-----CCcccE
Confidence            44556 999999999766655  445999999877652 13333 233333338899999877755443     3   89


Q ss_pred             EEEeCCCCceeEEeecCCceEEEEEecCccEEE-e---CCe-EEEEEcCCCeeeE----EEeeccCCcceEEEecCCCcE
Q 014007          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQK-IFVYNFADLKLLH----QIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~-i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  229 (432)
                      .+||+.+++.+..+.......+++|+|+|++++ +   ++. |.+|++.....+.    ...........++|+|+++.+
T Consensus       111 ~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l  190 (331)
T 3u4y_A          111 QSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFA  190 (331)
T ss_dssp             EEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEE
T ss_pred             EEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEE
Confidence            999999999988888777789999999997554 2   467 9999987643321    111223445789999999877


Q ss_pred             EEEeecCCCCcEEEEEccCCce---eeeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCce--EEEEEeC--C
Q 014007          230 VLVCPGLQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL--LQEVRRG--A  301 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~--~~~~~~~--~  301 (432)
                      +++.  ..++.|.+||+.++..   .........+..++|+|+|++|++++ .++. |.+||+.+++.  +..+...  .
T Consensus       191 ~v~~--~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~  267 (331)
T 3u4y_A          191 FVAN--LIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVD-VFNFNQLSGTLSFVKSFGHGLLI  267 (331)
T ss_dssp             EEEE--TTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEE-EEEEETTTTEEEEEEEEECCCCC
T ss_pred             EEEe--CCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCE-EEEEECCCCceeeeccccccccc
Confidence            6654  4689999999988654   33333457788999999999776665 4667 99999999887  4444432  1


Q ss_pred             CcC---ceEEEEECCCCCEEEEEe-CCCeEEEEEecCCC
Q 014007          302 DRA---EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (432)
Q Consensus       302 ~~~---~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~  336 (432)
                      +..   ....++|+|||++|++++ .++.|.+||+....
T Consensus       268 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          268 DPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            112   235689999999887665 56799999998754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=3.9e-21  Score=175.35  Aligned_cols=243  Identities=12%  Similarity=0.063  Sum_probs=184.2

Q ss_pred             ceeEEEEeeeCCeEEEecCCCCC--CCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcC
Q 014007          129 GIGVVEMLFRCNILALVGGGPDP--QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFA  202 (432)
Q Consensus       129 ~~~v~~~~~~~~~~~~~s~~~d~--~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~  202 (432)
                      ...+..+++++++..++.++.+.  ...++.|.+||..+++.+..+.....+..++|++++..++ .   ++.|.+||+.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            34567888999875444433210  0001789999999999999888777788999999998554 2   6899999999


Q ss_pred             CCeeeEEEeeccCC---------cceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee-eeccCCceeEEEEcCCCCE
Q 014007          203 DLKLLHQIETIANP---------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQL  272 (432)
Q Consensus       203 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~  272 (432)
                      +++.+..+..+...         ...++++|+++.++++.. ..++.|.+||..+..... +..+...+.+++|+|+|++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-CCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            99988887654322         467899999998766542 357899999998866544 4336667899999999999


Q ss_pred             EEEEcCCCceEEEEECCCCceEEEEEeCC--CcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCC
Q 014007          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDP  349 (432)
Q Consensus       273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~  349 (432)
                      |++++.++. |.+||+.+++.+..+....  +...+..++|+|+|++|++++ .++.|.+||+.+++.+           
T Consensus       199 l~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-----------  266 (353)
T 3vgz_A          199 LYTTNADGE-LITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL-----------  266 (353)
T ss_dssp             EEEECTTSE-EEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE-----------
T ss_pred             EEEEcCCCe-EEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-----------
Confidence            999999999 9999999999988887521  234688899999999877766 4599999999887621           


Q ss_pred             CCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe-cCCeEEEEEec
Q 014007          350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG-MDGSFYRCQFD  410 (432)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~  410 (432)
                                              ..+..+.  ...++|+|+|++|++++ .++.|.+|+..
T Consensus       267 ------------------------~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          267 ------------------------AKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             ------------------------EEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ------------------------EEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence                                    1222222  35699999999776666 68999998863

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=1e-20  Score=173.30  Aligned_cols=281  Identities=13%  Similarity=0.061  Sum_probs=182.7

Q ss_pred             CCCCEEEEEc-----CCcEEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC--
Q 014007           95 QDHGCFAAGT-----DHGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--  165 (432)
Q Consensus        95 ~~~~~l~~~~-----~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~--  165 (432)
                      +...++.+|+     +++|.+|.++.  ++.......   +......++|++++..+++++.+. -..+.|.+|++..  
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~   86 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEK   86 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTT
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCC
Confidence            3344555653     34599998753  443322222   445566788999987666655420 0117999998765  


Q ss_pred             Cce--eEEee-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEE---eec-----------cCCcceEEEec
Q 014007          166 SRC--IGELS-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQI---ETI-----------ANPKGLCAVSQ  224 (432)
Q Consensus       166 ~~~--~~~~~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~---~~~-----------~~~~~~~~~~~  224 (432)
                      ++.  +.... +......+++  ++.+++ +   ++.|.+|++.....+..+   ..+           ...+..++|+|
T Consensus        87 g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp  164 (361)
T 3scy_A           87 GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP  164 (361)
T ss_dssp             TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred             CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence            432  33333 4556777887  666555 2   789999999754322211   111           11225699999


Q ss_pred             CCCcEEEEeecCCCCcEEEEEccCCc-------e-------eeeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECC
Q 014007          225 GVGSLVLVCPGLQKGQVRVEHYASKR-------T-------KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTL  289 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i~d~~~~~-------~-------~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~  289 (432)
                      +++.++++.  ..++.|.+|+++...       +       .....+...+..++|+|+|++|++++ .++. |++||+.
T Consensus       165 dg~~l~~~~--~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~  241 (361)
T 3scy_A          165 DGKYLLADD--LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYA  241 (361)
T ss_dssp             TSSEEEEEE--TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEE
T ss_pred             CCCEEEEEe--CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEec
Confidence            998776543  457899999987532       2       11223456688999999999887776 5788 9999998


Q ss_pred             CCceE--EEEEeC-CCcCceEEEEECCCCCEEEEEeC--CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007          290 DGTLL--QEVRRG-ADRAEIYSLAFSSNAQWLAVSSD--KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (432)
Q Consensus       290 ~~~~~--~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (432)
                      +++..  ..+... .+......++|+|||++|+++..  ++.|.+|++......                          
T Consensus       242 ~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~--------------------------  295 (361)
T 3scy_A          242 DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT--------------------------  295 (361)
T ss_dssp             TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC--------------------------
T ss_pred             CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc--------------------------
Confidence            77542  333321 12245789999999999877665  489999999632100                          


Q ss_pred             ceeecceeeEEEEecCCCceEEEEccCCCEEEEEe-cCCeEEEEEecCCCCCc
Q 014007          365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG-MDGSFYRCQFDPVNGGE  416 (432)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~  416 (432)
                           ...+..+.. ...+..++|+|||++|++++ .++.|.+|.+|..+|+.
T Consensus       296 -----~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          296 -----LTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             -----EEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             -----EEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence                 000222333 34678999999999999888 57999999999877653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=3.4e-21  Score=175.37  Aligned_cols=239  Identities=10%  Similarity=0.040  Sum_probs=176.8

Q ss_pred             EEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCC--ceEEEEEecCccEEE-e---CCeEEEEEcCCCeee
Q 014007          134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLL  207 (432)
Q Consensus       134 ~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~  207 (432)
                      .+++.+++.++++++.+     +.|++||+.+++.+..+....  .+..++|+|++..++ +   ++.|.+||+.+++.+
T Consensus         4 g~~~~~~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~   78 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   78 (349)
T ss_dssp             CCCCCTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cccccCCCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence            34677788888888888     999999999999888887544  688999999997554 2   689999999999888


Q ss_pred             EEEeecc------CCcceEEEecCCCcEEEEeec---------CCCCcEEEEEccCCce---eeeeccCCceeEEEEcCC
Q 014007          208 HQIETIA------NPKGLCAVSQGVGSLVLVCPG---------LQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQD  269 (432)
Q Consensus       208 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~g---------~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~sp~  269 (432)
                      ..+....      ..+..++|+|+++.++++...         ..++.|.+||+.++..   .....+...+.+++|+|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d  158 (349)
T 1jmx_B           79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  158 (349)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC
Confidence            7775432      226789999999987665411         1148999999987332   222334557899999999


Q ss_pred             CCEEEEEcCCCceEEEEECCCCceEEEEEeCC------------------------------------------------
Q 014007          270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA------------------------------------------------  301 (432)
Q Consensus       270 ~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~------------------------------------------------  301 (432)
                      |+ +++++  +. |++||+.+++.+..+..+.                                                
T Consensus       159 g~-l~~~~--~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          159 GS-LYVAG--PD-IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             SC-EEEES--SS-EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             Cc-EEEcc--Cc-EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            99 55553  45 9999999998877665321                                                


Q ss_pred             ------------------CcCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeec
Q 014007          302 ------------------DRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV  362 (432)
Q Consensus       302 ------------------~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (432)
                                        +...+..++|+| +|++|+++  ++.|++||+.+++.+                        
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~------------------------  288 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI------------------------  288 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE------------------------
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE------------------------
Confidence                              001345678889 99999888  889999999887621                        


Q ss_pred             ccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          363 LPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                                 ..+. ....+..++|+|+|++|++++.++.|++|+++  +++.+..++
T Consensus       289 -----------~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~--~~~~~~~~~  333 (349)
T 1jmx_B          289 -----------KAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD--TLEKVKNIK  333 (349)
T ss_dssp             -----------EEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETT--TTEEEEEEE
T ss_pred             -----------EEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecc--ccceeeeee
Confidence                       1222 23357799999999999999999999999874  444444443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=2.1e-21  Score=172.20  Aligned_cols=216  Identities=10%  Similarity=0.113  Sum_probs=160.3

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCC-CeeeEEEeec-cCCcceEEEecCCCcEEE
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFAD-LKLLHQIETI-ANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  231 (432)
                      +.|++||+.+++......|...|.+++|+|++.+++  .++.|++||+.+ ++.......+ ...+..++|+|+++.+++
T Consensus        22 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  101 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAI  101 (297)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEE
T ss_pred             eeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEE
Confidence            899999999988876667999999999999999888  488999999998 7766555444 356778999999987665


Q ss_pred             EeecCCCCcEEEE--EccCCceeeeeccCCceeEEEEcCCCCEEE-EEcCCCceEEEEEC--CCCceEEEEEeCCCcCce
Q 014007          232 VCPGLQKGQVRVE--HYASKRTKFIMAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNT--LDGTLLQEVRRGADRAEI  306 (432)
Q Consensus       232 ~~~g~~d~~i~i~--d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~~dg~~i~vwd~--~~~~~~~~~~~~~~~~~i  306 (432)
                      +. ...++...||  +..++....+..+. .+..++|+|++++|+ +++.++. ++||++  .+++. ..+..  +...+
T Consensus       102 ~~-~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~-~~l~~~~~~~~~~-~~~~~--~~~~~  175 (297)
T 2ojh_A          102 SD-KVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQV-FDIYSMDIDSGVE-TRLTH--GEGRN  175 (297)
T ss_dssp             EE-CTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTE-EEEEEEETTTCCE-EECCC--SSSCE
T ss_pred             EE-eCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCc-eEEEEEECCCCcc-eEccc--CCCcc
Confidence            43 2233445555  55555555555444 489999999999887 7778888 899985  34443 33332  55789


Q ss_pred             EEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007          307 YSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI  385 (432)
Q Consensus       307 ~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  385 (432)
                      .+++|+|+|++|+.++ .++.++||++......                                  ...+..|...+..
T Consensus       176 ~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~----------------------------------~~~~~~~~~~~~~  221 (297)
T 2ojh_A          176 DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS----------------------------------VERITDSAYGDWF  221 (297)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----------------------------------EEECCCCSEEEEE
T ss_pred             ccceECCCCCEEEEEecCCCCccEEEECCCCCC----------------------------------cEEEecCCcccCC
Confidence            9999999999888766 5899999998732210                                  2223344556888


Q ss_pred             EEEccCCCEEEEEecC-----------CeEEEEEecC
Q 014007          386 VAFGHQKNTVVILGMD-----------GSFYRCQFDP  411 (432)
Q Consensus       386 ~~~s~~~~~l~~~~~d-----------g~v~iw~~~~  411 (432)
                      ++|+|+|++|++++.+           +.|++|+++.
T Consensus       222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~  258 (297)
T 2ojh_A          222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG  258 (297)
T ss_dssp             EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred             eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence            9999999999988876           4577777643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=8.9e-22  Score=178.26  Aligned_cols=236  Identities=9%  Similarity=0.007  Sum_probs=181.0

Q ss_pred             CeEEEEEcCCCCEEEEE-cC-CcEEEEEcCCCeeEEEeecccC---cceeEEEEeeeCCeEEEecCC------------C
Q 014007           87 TLLHISFNQDHGCFAAG-TD-HGFRIYNCDPFREIFRRDFERG---GGIGVVEMLFRCNILALVGGG------------P  149 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~-~~-~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~s~~------------~  149 (432)
                      .+.+++|+|+|++++++ .. +.|.+||+.+++........ .   +...+..+.|++++..++.+.            .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS-TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC-BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC-CcccccccccceEECCCCCEEEEEeccccccccccccc
Confidence            47789999999876544 43 44999999887765333332 1   123566788999986666553            3


Q ss_pred             CCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       150 d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      +     +.|.+||+.+++.+..+.....+.+++|+|++.+++ .++.|++||+.+++....+...... ..+.++|++..
T Consensus       114 ~-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~  187 (337)
T 1pby_B          114 P-----TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLA  187 (337)
T ss_dssp             C-----CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCC
T ss_pred             C-----ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccC-CCceeCCCccE
Confidence            4     899999999998888887777788999999998665 6899999999999888777544311 23478999886


Q ss_pred             EEEEeecCCCC-----------------------cEEEEEccCCceee--eeccCCceeEEEEcCCCCEEEEEcCCCceE
Q 014007          229 LVLVCPGLQKG-----------------------QVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLV  283 (432)
Q Consensus       229 ~~~~~~g~~d~-----------------------~i~i~d~~~~~~~~--~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i  283 (432)
                      +++..  ..++                       .|.+||+.++....  +..+...+.+++|+|+|++|+++  ++. |
T Consensus       188 l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v  262 (337)
T 1pby_B          188 VWNQH--ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-L  262 (337)
T ss_dssp             CCCCC--TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-E
T ss_pred             Eeeec--cCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-E
Confidence            65432  2222                       46899998866542  34566778899999999999988  678 9


Q ss_pred             EEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      ++||+.+++.+..+..+   ..+.+++|+|+|++|++++.++.|++||+.+++.
T Consensus       263 ~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          263 ESFDLEKNASIKRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EEEETTTTEEEEEEECS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             EEEECCCCcCcceecCC---CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence            99999999988888742   5678999999999999999999999999998873

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=4.8e-22  Score=199.16  Aligned_cols=290  Identities=8%  Similarity=0.010  Sum_probs=193.2

Q ss_pred             CeEEEEEcCCCCEEEEEcC----------CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           87 TLLHISFNQDHGCFAAGTD----------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~----------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .|.+++|||||++|+++.+          ..+.+||+++++........ ++...+..+.|+|++..++.++.      +
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~~~~SPdG~~la~~~~------~  134 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-VSNAKLQYAGWGPKGQQLIFIFE------N  134 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-CCSCCCSBCCBCSSTTCEEEEET------T
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-cccccccccEECCCCCEEEEEEC------C
Confidence            4899999999999998864          34889999887653222221 34445788999999988887764      6


Q ss_pred             eEEEEeCCCCceeEEee-cCCce------------------EEEEEecCccEEEe---CC--------------------
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEV------------------RSVKLRRDRIIVVL---EQ--------------------  194 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v------------------~~~~~~~~~~~~~~---d~--------------------  194 (432)
                      .|++||+.+++...... +...+                  .+++|+|||+.+++   ++                    
T Consensus       135 ~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (723)
T 1xfd_A          135 NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK  214 (723)
T ss_dssp             EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred             eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcce
Confidence            99999999887766554 33333                  78999999998873   32                    


Q ss_pred             --------------eEEEEEcCCCeeeEEEeec------cCCcceEEEecCCCcEEEEee-cCCCCcEEEEEccCCceee
Q 014007          195 --------------KIFVYNFADLKLLHQIETI------ANPKGLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKRTKF  253 (432)
Q Consensus       195 --------------~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~~~  253 (432)
                                    .|++||+.+++....+..+      ...+..++|+|||+.++.... +..+..|++||+.++....
T Consensus       215 ~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~  294 (723)
T 1xfd_A          215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (723)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             eccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence                          7999999888765555543      345677999999985543321 2234689999998876544


Q ss_pred             e-e-ccCCcee----EEEEcCCCCEEEE--EcCCC------ceEEEEE-CCCCc--eEEEEEeCCCcCceEE-EEECCCC
Q 014007          254 I-M-AHDSRIA----CFALTQDGQLLAT--SSTKG------TLVRIFN-TLDGT--LLQEVRRGADRAEIYS-LAFSSNA  315 (432)
Q Consensus       254 ~-~-~~~~~i~----~~~~sp~~~~l~~--~~~dg------~~i~vwd-~~~~~--~~~~~~~~~~~~~i~~-~~~s~~~  315 (432)
                      + . .+...+.    .++|+|||+.|+.  +..++      . |++|| ..+++  +...+..  ....+.. ++|+|||
T Consensus       295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg  371 (723)
T 1xfd_A          295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH-ITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKG  371 (723)
T ss_dssp             EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE-EEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTT
T ss_pred             EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE-EEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCC
Confidence            3 2 3344443    8899999997775  44566      4 77777 34444  1444442  2234544 6999999


Q ss_pred             CEEEEEeCC---CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe---cCCCceEEEEc
Q 014007          316 QWLAVSSDK---GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL---VEGSPYIVAFG  389 (432)
Q Consensus       316 ~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s  389 (432)
                      +.|+..+.+   +.++||++.........                                 .+..   |...+..++|+
T Consensus       372 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~---------------------------------~l~~~~~~~~~~~~~~~s  418 (723)
T 1xfd_A          372 NKIYFLSTEDLPRRRQLYSANTVGNFNRQ---------------------------------CLSCDLVENCTYFSASFS  418 (723)
T ss_dssp             TEEEEEESSSCTTCCEEEEECSSTTCCCB---------------------------------CSSTTSSSSCCCCEEEEC
T ss_pred             CEEEEEEcCCCCcceEEEEEeCCCCCCcc---------------------------------eecccccCCCCeEEEEEC
Confidence            999866654   78999999754310000                                 0111   34557889999


Q ss_pred             cCCCEEEEEecC-C--eEEEEEecCCCCCcceEee
Q 014007          390 HQKNTVVILGMD-G--SFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       390 ~~~~~l~~~~~d-g--~v~iw~~~~~~~~~~~~~~  421 (432)
                      |||++|+..... +  ...++  +...++++..++
T Consensus       419 pdg~~l~~~~~~~~~p~~~~~--~~~~~~~~~~~~  451 (723)
T 1xfd_A          419 HSMDFFLLKCEGPGVPMVTVH--NTTDKKKMFDLE  451 (723)
T ss_dssp             TTSSEEEEECCSSSSCCEEEE--ETTTCCEEEEEE
T ss_pred             CCCCEEEEEccCCCCCeEEEE--ECCCCCEEEEec
Confidence            999988865442 2  23333  344455544443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=8.9e-23  Score=204.33  Aligned_cols=278  Identities=8%  Similarity=-0.023  Sum_probs=191.5

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcce---eEEEEeeeCCeEEEecCCC---------CCCCCCCe
Q 014007           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCNILALVGGGP---------DPQYPLNK  157 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~s~~~---------d~~~~~~~  157 (432)
                      +++|+|||++++.+.++.|++|++.+++..  ..+. ++..   .+..+.|+||+..++.++.         +     +.
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~--~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~-----~~   91 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSY--TILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT-----AT   91 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEE--EEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE-----EE
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEE--EEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecc-----eE
Confidence            579999998777776777999999888765  3332 2322   3889999999998887654         5     89


Q ss_pred             EEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEe-eccC-----------------Cc
Q 014007          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIE-TIAN-----------------PK  217 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~-~~~~-----------------~~  217 (432)
                      |++||+.+++.+........+..++|+|||+.++  .++.|++||+.+++..+... ++..                 ..
T Consensus        92 i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~  171 (719)
T 1z68_A           92 YYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK  171 (719)
T ss_dssp             EEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred             EEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence            9999999887632222346788999999999888  48999999998877644321 1111                 11


Q ss_pred             ceEEEecCCCcEEEEeecC-------------------------------CCCcEEEEEccCCcee---------eeecc
Q 014007          218 GLCAVSQGVGSLVLVCPGL-------------------------------QKGQVRVEHYASKRTK---------FIMAH  257 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~-------------------------------~d~~i~i~d~~~~~~~---------~~~~~  257 (432)
                      ..++|+|||+.++++....                               ....|++||+.++...         .+.+|
T Consensus       172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  251 (719)
T 1z68_A          172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS  251 (719)
T ss_dssp             CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred             ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence            4799999999877654210                               0127889999886531         13358


Q ss_pred             CCceeEEEEcCCCCEEEEEcCC----CceEEEEE----CCCCceEEEEE---eCCCcCceE-----EEEECCCCCEEEE-
Q 014007          258 DSRIACFALTQDGQLLATSSTK----GTLVRIFN----TLDGTLLQEVR---RGADRAEIY-----SLAFSSNAQWLAV-  320 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~d----g~~i~vwd----~~~~~~~~~~~---~~~~~~~i~-----~~~~s~~~~~l~~-  320 (432)
                      ...+.+++|+||++++++....    .. |++||    +.++++...+.   . .+...+.     .+.|+|||+.|+. 
T Consensus       252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~-l~~~d~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          252 DYYFSWLTWVTDERVCLQWLKRVQNVSV-LSICDFREDWQTWDCPKTQEHIEE-SRTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             CEEEEEEEESSSSEEEEEEEESSTTEEE-EEEEEECSSSSSEECCGGGEEEEE-CSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             cceEEEeEEeCCCeEEEEEeccccCeEE-EEEEcccCCCCCCceEEEEecccc-cCCceEccccCCccEECCCCCeEEEE
Confidence            8889999999998877764322    24 88899    77776654442   2 1445555     7899999996554 


Q ss_pred             -EeCCC--eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEE
Q 014007          321 -SSDKG--TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVI  397 (432)
Q Consensus       321 -~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  397 (432)
                       ...+|  .|++||+.+++.                                    ..+..+...+..+.++ +++.|+.
T Consensus       330 ~~~~~g~~~l~~~~~~~~~~------------------------------------~~lt~~~~~v~~~~~~-d~~~i~~  372 (719)
T 1z68_A          330 FSDKDGYKHIHYIKDTVENA------------------------------------IQITSGKWEAINIFRV-TQDSLFY  372 (719)
T ss_dssp             EECTTSCEEEEEESSCSTTC------------------------------------EECSCSSSCEEEEEEE-CSSEEEE
T ss_pred             EEccCCceEEEEEECCCCce------------------------------------EecccCceEEEEEEEE-eCCEEEE
Confidence             44555  566667655541                                    1122233346667777 8887776


Q ss_pred             EecC-----CeEEEEEecCCCC
Q 014007          398 LGMD-----GSFYRCQFDPVNG  414 (432)
Q Consensus       398 ~~~d-----g~v~iw~~~~~~~  414 (432)
                      .+.+     +.+++|.++...+
T Consensus       373 ~~~~~~~~~~~~~l~~~~~~~g  394 (719)
T 1z68_A          373 SSNEFEEYPGRRNIYRISIGSY  394 (719)
T ss_dssp             EESCGGGCTTCBEEEEEECSSS
T ss_pred             EEecCCCCCceEEEEEEeCCCC
Confidence            6655     8899999987544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=1.5e-20  Score=171.12  Aligned_cols=240  Identities=11%  Similarity=0.143  Sum_probs=165.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc---CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC-CCCCCCCCeEE
Q 014007           84 PPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVM  159 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~~~v~  159 (432)
                      +...+..++|+|||++++++.   ++.|++|++++++......+. .+...+..++|++++..+++++ .+     +.|.
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~p~~~a~spdg~~l~~~~~~~-----~~v~  111 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV-APGTPPAYVAVDEARQLVYSANYHK-----GTAE  111 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-EESCCCSEEEEETTTTEEEEEETTT-----TEEE
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee-cCCCCCEEEEECCCCCEEEEEeCCC-----CEEE
Confidence            345667899999999444443   244999999776654434432 3556778899999997666554 55     8999


Q ss_pred             EEeCCC-C--ceeEEeecC----------CceEEEEEecCccEEEe---CCeEEEEEcC-CCeeeE--EEeec-cCCcce
Q 014007          160 IWDDHQ-S--RCIGELSFR----------SEVRSVKLRRDRIIVVL---EQKIFVYNFA-DLKLLH--QIETI-ANPKGL  219 (432)
Q Consensus       160 iwd~~~-~--~~~~~~~~~----------~~v~~~~~~~~~~~~~~---d~~i~i~d~~-~~~~~~--~~~~~-~~~~~~  219 (432)
                      +|++.. +  +.+..+.+.          ..+.+++|+|+++++++   ++.|++|++. +++...  .+... ......
T Consensus       112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence            999863 3  233333322          24888999999995554   6789999998 454322  22222 224557


Q ss_pred             EEEecCCCcEEEEeecCCCCcEEEEEccC--Ccee---eeeccC------CceeEEEEcCCCCEEE-EEcCCCceEEEEE
Q 014007          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTK---FIMAHD------SRIACFALTQDGQLLA-TSSTKGTLVRIFN  287 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~---~~~~~~------~~i~~~~~sp~~~~l~-~~~~dg~~i~vwd  287 (432)
                      ++|+|+|+.++++.  ..++.|.+|+++.  +...   .+....      ..+..++|+|+|++|+ +...++. |.+||
T Consensus       192 ~~~spdg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~  268 (347)
T 3hfq_A          192 LVFSPDGQYAFLAG--ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFA  268 (347)
T ss_dssp             EEECTTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEE
T ss_pred             EEECCCCCEEEEEe--CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEE
Confidence            89999998776543  4678999999885  3322   222222      4588999999999875 4556788 99999


Q ss_pred             CCCC---ceEEEEEeCCCcCceEEEEECCCCCEEEEEeC-CCeEEEEEecC
Q 014007          288 TLDG---TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKV  334 (432)
Q Consensus       288 ~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~  334 (432)
                      +...   +.+..+..  +...+..++|+|||++|++++. ++.|.+|+++.
T Consensus       269 ~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          269 VTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             ECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             ECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            8732   44445543  3356889999999999888875 58999996643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.88  E-value=4.3e-21  Score=177.93  Aligned_cols=279  Identities=10%  Similarity=-0.014  Sum_probs=188.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCC----cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007           87 TLLHISFNQDHGCFAAGTDH----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      .+.+++|+|||++|+...+.    .|.+|++++++..   .+..++......+.|+|++..++....+     +.|++||
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d  108 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV---QLTEGKGDNTFGGFISTDERAFFYVKNE-----LNLMKVD  108 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE---ECCCSSCBCTTTCEECTTSSEEEEEETT-----TEEEEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE---EeecCCCCccccceECCCCCEEEEEEcC-----CcEEEEE
Confidence            36778999999998877532    3888898876643   2221222222236789999888777776     7899999


Q ss_pred             CCCCceeEEee-cCCceEE-------------------EEEecCccEEEe--------CCeEEEEEcCCCeeeEEEeecc
Q 014007          163 DHQSRCIGELS-FRSEVRS-------------------VKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIA  214 (432)
Q Consensus       163 ~~~~~~~~~~~-~~~~v~~-------------------~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~  214 (432)
                      +.+++...... +......                   +.|+|++..++.        +..|++||+.+++..... .+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~  187 (396)
T 3c5m_A          109 LETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDT  187 (396)
T ss_dssp             TTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EES
T ss_pred             CCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCC
Confidence            99887665555 3332222                   245666665441        347999999887765444 455


Q ss_pred             CCcceEEEec-CCCcEEEEeecCCC----CcEEEEEccCCceeeeecc--CCceeEEEEcCCCCEEEEEcCC-----Cce
Q 014007          215 NPKGLCAVSQ-GVGSLVLVCPGLQK----GQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTK-----GTL  282 (432)
Q Consensus       215 ~~~~~~~~~~-~~~~~~~~~~g~~d----~~i~i~d~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~d-----g~~  282 (432)
                      ..+..+.|+| +++.++++..+ ..    ..|.+||+.++....+..+  ...+..++|+|+|++|+.++.+     +. 
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~-  265 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV-  265 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE-
T ss_pred             cccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce-
Confidence            6677899999 77766665432 22    5788999887665555443  2358889999999988777554     55 


Q ss_pred             EEEEECCCCceEEEEEeCCCcCceEEEEECC-CCCEEEEEe----------------CCCeEEEEEecCCCCCCCCCCCC
Q 014007          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSS-NAQWLAVSS----------------DKGTVHVFNLKVNSGSARSEPRS  345 (432)
Q Consensus       283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~~~~~~  345 (432)
                      |++||+.+++.......   . ... +.|+| ||++|+.++                .++.|++||+.+++..       
T Consensus       266 l~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------  333 (396)
T 3c5m_A          266 IYKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-------  333 (396)
T ss_dssp             EEEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-------
T ss_pred             EEEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-------
Confidence            99999988876544332   1 233 89999 999888754                3478999999876521       


Q ss_pred             CCCCCCCCCCceeEeecccceeecceeeEEEEecCC-----------CceEEEEccCCCEEEEEec-CCeEEEEEecCCC
Q 014007          346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-----------SPYIVAFGHQKNTVVILGM-DGSFYRCQFDPVN  413 (432)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~  413 (432)
                                                   .+..+..           .+..++|+|||+.|+.++. +|...||.++...
T Consensus       334 -----------------------------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~  384 (396)
T 3c5m_A          334 -----------------------------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPE  384 (396)
T ss_dssp             -----------------------------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCT
T ss_pred             -----------------------------EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcc
Confidence                                         1222322           2566899999998887765 6778888887765


Q ss_pred             CCcc
Q 014007          414 GGEM  417 (432)
Q Consensus       414 ~~~~  417 (432)
                      +...
T Consensus       385 ~~~~  388 (396)
T 3c5m_A          385 SYKH  388 (396)
T ss_dssp             TCC-
T ss_pred             cccc
Confidence            5443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=1.1e-19  Score=166.63  Aligned_cols=265  Identities=10%  Similarity=-0.000  Sum_probs=179.0

Q ss_pred             CcEEEEEcC--CCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC-CCceeEEeec--CCceEE
Q 014007          106 HGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRCIGELSF--RSEVRS  180 (432)
Q Consensus       106 ~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~-~~~~~~~~~~--~~~v~~  180 (432)
                      ++|.+|+++  +++..............+..+++++++..+++++.      +.|.+|++. +++......+  .+.+..
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~------~~v~~~~~~~~g~~~~~~~~~~~g~~~~   87 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM------KKWSSFAVKSPTEIVHEASHPIGGHPRA   87 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB------TEEEEEEEEETTEEEEEEEEECCSSGGG
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc------ceEEEEEECCCCCEEEeeEeecCCCCcc
Confidence            458888764  44443222221113345678899999987777665      489999987 7766544432  244667


Q ss_pred             EEEecCccE--EE----------------eCCeEEEEEcC-CCeeeEEEee----ccCCcceEEEecCCCcEEEEeecCC
Q 014007          181 VKLRRDRII--VV----------------LEQKIFVYNFA-DLKLLHQIET----IANPKGLCAVSQGVGSLVLVCPGLQ  237 (432)
Q Consensus       181 ~~~~~~~~~--~~----------------~d~~i~i~d~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~  237 (432)
                      ++|+|+|++  ++                .++.+.+|++. +++....+..    +...+..++|+|+|+.++++.  ..
T Consensus        88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~--~~  165 (365)
T 1jof_A           88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD--LT  165 (365)
T ss_dssp             GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE--TT
T ss_pred             EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc--CC
Confidence            899999984  32                25689999997 4665444432    345677899999998765443  34


Q ss_pred             CCcEEEEEcc-CCceee---ee--ccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECC--CCceEE---EEEeCC----
Q 014007          238 KGQVRVEHYA-SKRTKF---IM--AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTL--DGTLLQ---EVRRGA----  301 (432)
Q Consensus       238 d~~i~i~d~~-~~~~~~---~~--~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~--~~~~~~---~~~~~~----  301 (432)
                      ++.|.+||++ ++....   +.  .|...+..++|+|+|++|++++. ++. |.+|++.  +++...   .+....    
T Consensus       166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~  244 (365)
T 1jof_A          166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHSFPLIPPGIP  244 (365)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred             CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe-EEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence            6799999998 554432   22  24567999999999999888765 677 9999865  566532   233211    


Q ss_pred             -CcC------ceEEEE-ECCCCCEEEEEeCC-C-----eEEEEEec-CCCCCCCCCCCCCCCCCCCCCCceeEeecccce
Q 014007          302 -DRA------EIYSLA-FSSNAQWLAVSSDK-G-----TVHVFNLK-VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKY  366 (432)
Q Consensus       302 -~~~------~i~~~~-~s~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (432)
                       +..      .+..++ |+|||++|+++..+ +     +|.+|++. +++..                            
T Consensus       245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~----------------------------  296 (365)
T 1jof_A          245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE----------------------------  296 (365)
T ss_dssp             CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE----------------------------
T ss_pred             CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE----------------------------
Confidence             111      488999 99999998876632 3     89999996 34310                            


Q ss_pred             eecceeeE-EEEecCCCceEEEEcc---CCCEEEEEecC-CeEEEEEecCC
Q 014007          367 FSSEWSVA-QFRLVEGSPYIVAFGH---QKNTVVILGMD-GSFYRCQFDPV  412 (432)
Q Consensus       367 ~~~~~~~~-~~~~~~~~v~~~~~s~---~~~~l~~~~~d-g~v~iw~~~~~  412 (432)
                           .+. ....+...+..++|+|   ||++|++++.+ +.|.+|+++..
T Consensus       297 -----~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          297 -----KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             -----EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             -----EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence                 011 1223444577899999   89999999875 89999999875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=2.1e-19  Score=164.56  Aligned_cols=238  Identities=13%  Similarity=0.092  Sum_probs=161.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-----CcEEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           84 PPPTLLHISFNQDHGCFAAGTD-----HGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~-----~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      +...+..++|+|||++|++++.     +.|.+|+++.  ++........ .+......+++ ....++++...+     +
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~-~~~~~p~~~~~-dg~~l~~~~~~~-----~  120 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK-TMGADPCYLTT-NGKNIVTANYSG-----G  120 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE-CSSSCEEEEEE-CSSEEEEEETTT-----T
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec-cCCCCcEEEEE-CCCEEEEEECCC-----C
Confidence            5667788999999998888875     3599999875  4433333332 24445666667 333344444455     8


Q ss_pred             eEEEEeCCCCceeEE----eec-----------CCceEEEEEecCccEEE-e---CCeEEEEEcCCCee------e----
Q 014007          157 KVMIWDDHQSRCIGE----LSF-----------RSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKL------L----  207 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~----~~~-----------~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~------~----  207 (432)
                      .|.+|++.....+..    +.+           ...+.+++|+|++++++ .   ++.|++|++.....      +    
T Consensus       121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            999999975433221    111           22357899999998665 2   67999999875331      1    


Q ss_pred             --EEE-eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee------eccCCceeEEEEcCCCCEEEEEcC
Q 014007          208 --HQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI------MAHDSRIACFALTQDGQLLATSST  278 (432)
Q Consensus       208 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~------~~~~~~i~~~~~sp~~~~l~~~~~  278 (432)
                        ... .........++|+|+++.++++.  ..++.|.+|++.++.+..+      ..+......++|+|||++|+++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~--~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSDGKFAYLIN--EIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEE--TTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             cccceecCCCCCCeEEEEcCCCCEEEEEc--CCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence              111 12233456799999998776553  3579999999987544322      223345789999999999877665


Q ss_pred             C--CceEEEEECC--CCc--eEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007          279 K--GTLVRIFNTL--DGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (432)
Q Consensus       279 d--g~~i~vwd~~--~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~  334 (432)
                      +  +. |.+|++.  +++  .+..+..   ...+..++|+|||++|++++ .++.|.+|+++.
T Consensus       279 ~~~~~-i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          279 LKADG-VAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             SSSCE-EEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCE-EEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence            4  77 9999985  455  3434442   35678999999999988887 679999977653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=1.8e-21  Score=190.05  Aligned_cols=230  Identities=10%  Similarity=-0.012  Sum_probs=172.0

Q ss_pred             cceeEEEEeeeCCeEEEecCCC-CCCCCCCeEEEEeCCCCceeEEeecC-CceEEEEEecCccEEE-eC-----CeEEEE
Q 014007          128 GGIGVVEMLFRCNILALVGGGP-DPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVV-LE-----QKIFVY  199 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~-~d-----~~i~i~  199 (432)
                      ....+..++|++|+..++.++. +     |+++||++..++..+...+. ..+..++|+|| ++++ .+     ....+|
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~-----g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSE-----GSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEET-----TEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccC-----CceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence            4567999999999988887765 7     99999998666655444455 68999999999 6555 22     344554


Q ss_pred             EcCC---CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEE
Q 014007          200 NFAD---LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS  276 (432)
Q Consensus       200 d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~  276 (432)
                      .+..   +... .+.. .......+|+|+++.+++++ + .++.+.+||+.++....+..+..  .+++|+|||++|+++
T Consensus        94 ~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s-~-~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~  167 (582)
T 3o4h_A           94 KVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTG-A-TEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGL  167 (582)
T ss_dssp             EEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEE-E-CSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEE
T ss_pred             EEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEe-c-CCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEE
Confidence            4432   2222 3322 22345779999999887765 3 34555699999987777665554  899999999999988


Q ss_pred             cCC----CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC--eEEEEEecCCCCCCCCCCCCCCCCC
Q 014007          277 STK----GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG--TVHVFNLKVNSGSARSEPRSTSDPT  350 (432)
Q Consensus       277 ~~d----g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~  350 (432)
                      +.+    +. |++||+.+++.. .+..  +...+..++|||||++|+++..++  .|++||+.+++..            
T Consensus       168 ~~~~~~~~~-i~~~d~~~g~~~-~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~------------  231 (582)
T 3o4h_A          168 GFFGGGRVS-LFTSNLSSGGLR-VFDS--GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE------------  231 (582)
T ss_dssp             EEEETTEEE-EEEEETTTCCCE-EECC--SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE------------
T ss_pred             EEcCCCCeE-EEEEcCCCCCce-Eeec--CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE------------
Confidence            877    67 999999888865 4442  557889999999999999888888  8999999887621            


Q ss_pred             CCCCCceeEeecccceeecceeeEEEEecCCCceEEE--------EccCCCEEEEEecCCeEEEEEe
Q 014007          351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA--------FGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                                              .+..|...+..++        |+|||..+++++.||.+++|.+
T Consensus       232 ------------------------~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          232 ------------------------DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ------------------------ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ------------------------EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                                    2233444455555        9999998999999999999997

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=5.2e-20  Score=167.49  Aligned_cols=228  Identities=10%  Similarity=0.042  Sum_probs=168.7

Q ss_pred             EEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCc
Q 014007           90 HISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      .++++++++++++++ ++.|++||+.+++.......  +....+..+++++++. +++++..+     +.|.+||+.+++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~~t~~   76 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCK   76 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeCCC-----CcEEEEeCCCCc
Confidence            356788888888877 55599999988876533322  2222467888999885 44555556     899999999998


Q ss_pred             eeEEeecC-------CceEEEEEecCccEEEe---C------------CeEEEEEcCCCee---eEEEeeccCCcceEEE
Q 014007          168 CIGELSFR-------SEVRSVKLRRDRIIVVL---E------------QKIFVYNFADLKL---LHQIETIANPKGLCAV  222 (432)
Q Consensus       168 ~~~~~~~~-------~~v~~~~~~~~~~~~~~---d------------~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~  222 (432)
                      .+..+...       ..+.+++|+|++++++.   +            +.|.+||+.+++.   +..+.. ...+..++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~  155 (349)
T 1jmx_B           77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRA  155 (349)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEE
T ss_pred             EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeE
Confidence            88777632       23789999999987772   3            8999999988543   333333 335778899


Q ss_pred             ecCCCcEEEEeecCCCCcEEEEEccCCcee-eeecc--------------------------------------------
Q 014007          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAH--------------------------------------------  257 (432)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~~--------------------------------------------  257 (432)
                      +|+++ +++ . +   +.|.+||..++... .+..+                                            
T Consensus       156 s~dg~-l~~-~-~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  229 (349)
T 1jmx_B          156 ADDGS-LYV-A-G---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA  229 (349)
T ss_dssp             CTTSC-EEE-E-S---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred             CCCCc-EEE-c-c---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence            99998 544 2 2   34999998775432 22211                                            


Q ss_pred             ------------------------CCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007          258 ------------------------DSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (432)
Q Consensus       258 ------------------------~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s  312 (432)
                                              ...+..++|+| +|++|+++  ++. |++||+.+++.+..+..+   ..+.+++|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~~---~~~~~~~~s  303 (349)
T 1jmx_B          230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAANLD---HTYYCVAFD  303 (349)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEEECS---SCCCEEEEC
T ss_pred             ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEEcCC---CCccceEEC
Confidence                                    11355778889 99999888  778 999999999998888732   457899999


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          313 SNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      |+|++|++++.++.|++||+.+++.
T Consensus       304 ~dg~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          304 KKGDKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             SSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             CCCCEEEEecCCCeEEEEeccccce
Confidence            9999998888899999999988763

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=2.1e-19  Score=164.69  Aligned_cols=241  Identities=11%  Similarity=0.100  Sum_probs=166.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcC-CCeeEEEeecccCcceeEEEEeeeCCeE--EEecCC-------------
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGG-------------  148 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~-------------  148 (432)
                      ...+..++|+|||++|++++.+.|.+|+++ +++........ .+. ....++++|++.  ++++++             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~-~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP-IGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE-CCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEee-cCC-CCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            346788999999998888775589999997 66543222221 111 244588999988  454553             


Q ss_pred             CCCCCCCCeEEEEeCC-CCceeEEee-----cCCceEEEEEecCccEEEe----CCeEEEEEcC-CCeee--EEEee--c
Q 014007          149 PDPQYPLNKVMIWDDH-QSRCIGELS-----FRSEVRSVKLRRDRIIVVL----EQKIFVYNFA-DLKLL--HQIET--I  213 (432)
Q Consensus       149 ~d~~~~~~~v~iwd~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~-~~~~~--~~~~~--~  213 (432)
                      .+     +.+.+|++. +++....+.     +...+.+++|+|||++++.    ++.|++||+. +++..  ..+..  +
T Consensus       117 ~~-----g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T 1jof_A          117 FA-----GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             SC-----CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             CC-----ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence            45     899999997 465544333     4567999999999987663    5689999998 66643  23331  2


Q ss_pred             cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--Ccee----eee-------ccCC------ceeEEE-EcCCCCEE
Q 014007          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTK----FIM-------AHDS------RIACFA-LTQDGQLL  273 (432)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~----~~~-------~~~~------~i~~~~-~sp~~~~l  273 (432)
                      ......++|+|+|+.++++.  ..++.|.+|+++.  +...    .+.       +|..      .+..++ |+|||++|
T Consensus       192 g~~p~~~~~spdg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l  269 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALM--EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCCEeEECCCCCEEEEEE--CCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence            44567899999999776653  3578999998763  3321    121       1222      588999 99999998


Q ss_pred             EEEcCCC------ceEEEEECC-CCceEEEEE-eCCCcCceEEEEECC---CCCEEEEEeC-CCeEEEEEecCC
Q 014007          274 ATSSTKG------TLVRIFNTL-DGTLLQEVR-RGADRAEIYSLAFSS---NAQWLAVSSD-KGTVHVFNLKVN  335 (432)
Q Consensus       274 ~~~~~dg------~~i~vwd~~-~~~~~~~~~-~~~~~~~i~~~~~s~---~~~~l~~~~~-dg~i~iwd~~~~  335 (432)
                      ++++.+.      . |.+|++. +++...... ...+...+..++|+|   ||++|++++. ++.|.+|+++..
T Consensus       270 ~v~~~~~~~~~~~~-i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          270 FASSRANKFELQGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEESSTTSCCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEECCCCCCCCCCe-EEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            8776432      7 9999996 666543221 111234567889999   8999999886 489999999765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=3.5e-20  Score=185.76  Aligned_cols=245  Identities=10%  Similarity=0.022  Sum_probs=167.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcce-----eEEEEeeeCCeEEEecCCCCCC-C---CCCe
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI-----GVVEMLFRCNILALVGGGPDPQ-Y---PLNK  157 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~s~~~d~~-~---~~~~  157 (432)
                      ...++.|+|||++|+++ ++.|++|++.+++...  .+. ++..     ....+.|+||+..++.+..+.. +   ..+.
T Consensus        18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSV--FLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEE--EEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccEECCCCcEEEEc-CCcEEEEECCCCceEE--EEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            45678999999999987 7779999999887653  233 2322     2234788999988877665300 0   0145


Q ss_pred             EEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEE-eecc-----------------CCc
Q 014007          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQI-ETIA-----------------NPK  217 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~-~~~~-----------------~~~  217 (432)
                      +.+||+.+++......+...+...+|+|||+.++  .++.|++|++.+++..+.. .++.                 ...
T Consensus        94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            6799999988665444778899999999999888  4899999999887644321 1111                 112


Q ss_pred             ceEEEecCCCcEEEEeecC-------------------------------CC--CcEEEEEccC---C---ceeeeec--
Q 014007          218 GLCAVSQGVGSLVLVCPGL-------------------------------QK--GQVRVEHYAS---K---RTKFIMA--  256 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~-------------------------------~d--~~i~i~d~~~---~---~~~~~~~--  256 (432)
                      ..+.|+|||+.++++....                               .+  ..|.+||+.+   +   ....+..  
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~  253 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA  253 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence            3488999999877653110                               01  1588899988   6   4444443  


Q ss_pred             ----cCCceeEEEEcCCCCEEEEEcC----CCceEEEEECCCCc----eE--EEEEeCCCcCceE-----EEEECCCCCE
Q 014007          257 ----HDSRIACFALTQDGQLLATSST----KGTLVRIFNTLDGT----LL--QEVRRGADRAEIY-----SLAFSSNAQW  317 (432)
Q Consensus       257 ----~~~~i~~~~~sp~~~~l~~~~~----dg~~i~vwd~~~~~----~~--~~~~~~~~~~~i~-----~~~~s~~~~~  317 (432)
                          |...+..++|+|||+.++....    +.. |++||+.+++    +.  ..+....+...+.     .+.|+|||+.
T Consensus       254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~-i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~  332 (740)
T 4a5s_A          254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSV-MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS  332 (740)
T ss_dssp             HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE-EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred             cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE-EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence                7888999999999997665533    336 9999999887    22  2221112334443     7899999998


Q ss_pred             EE-EEe-CC--CeEEEEEecCCC
Q 014007          318 LA-VSS-DK--GTVHVFNLKVNS  336 (432)
Q Consensus       318 l~-~~~-~d--g~i~iwd~~~~~  336 (432)
                      |+ ..+ .+  ..|++||+.+++
T Consensus       333 l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          333 FYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             EEEEEECTTSCEEEEEEETTCSS
T ss_pred             EEEEEEcCCCceEEEEEECCCCc
Confidence            77 665 33  368888887655

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=4.7e-20  Score=172.49  Aligned_cols=218  Identities=11%  Similarity=0.086  Sum_probs=153.0

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe--CCeEEEEEcCCCe----------ee------EEEeeccCCc
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLK----------LL------HQIETIANPK  217 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~----------~~------~~~~~~~~~~  217 (432)
                      +.+++|+... .    + ....+..+++++++.+++.  ...+++|+.....          .+      ..+ .+...+
T Consensus        23 ~~vri~~~~~-~----~-~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v   95 (434)
T 2oit_A           23 KKVRIFDSPE-E----L-PKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPI   95 (434)
T ss_dssp             CEEECSCCCS-S----C-CCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCE
T ss_pred             eeEEecCCcc-c----c-CCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccc-cCCCcc
Confidence            5677776421 1    1 2446788999998877773  3448888753210          00      111 234568


Q ss_pred             ceEEEecCCCcEEEEe-ecCCCCcEEEEEccCC------------ceeeeeccCCceeEEEEcCC-CCEEEEEcCCCceE
Q 014007          218 GLCAVSQGVGSLVLVC-PGLQKGQVRVEHYASK------------RTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLV  283 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~-~g~~d~~i~i~d~~~~------------~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i  283 (432)
                      ..++|+++++.+++++ +|+.|+.|++||+++.            ....+.+|...|.+++|+|+ +++|++++.||+ |
T Consensus        96 ~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v  174 (434)
T 2oit_A           96 HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-I  174 (434)
T ss_dssp             EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-E
T ss_pred             cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-E
Confidence            8999999998765432 4668999999998753            13445679999999999997 899999999999 9


Q ss_pred             EEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (432)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                      ++||++++..+.....  |...|.+++|+|+|++|++|+.||+|++||++ ++.......+                   
T Consensus       175 ~iwD~~~~~~~~~~~~--~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~-------------------  232 (434)
T 2oit_A          175 AVLQVTETVKVCATLP--STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP-------------------  232 (434)
T ss_dssp             EEEEESSSEEEEEEEC--GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC-------------------
T ss_pred             EEEEcCCCcceeeccC--CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC-------------------
Confidence            9999999876655553  66899999999999999999999999999998 3311100000                   


Q ss_pred             cceeecceeeEEEEecCCCceEEEEccCCCEEEE-EecCCe------EEEEEecCC
Q 014007          364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVI-LGMDGS------FYRCQFDPV  412 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~------v~iw~~~~~  412 (432)
                       ...        ...|...|.+++|++++.++++ .+.||.      +++|++...
T Consensus       233 -~~~--------~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          233 -PFY--------ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             -TTC--------CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             -ccc--------CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence             000        0012236889999999888764 334443      899998654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=2.5e-18  Score=160.80  Aligned_cols=238  Identities=14%  Similarity=0.109  Sum_probs=165.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe----------eEE----EeecccCcceeEEEEeeeCCeEEEe----c
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR----------EIF----RRDFERGGGIGVVEMLFRCNILALV----G  146 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~----------~~~----~~~~~~~~~~~v~~~~~~~~~~~~~----s  146 (432)
                      ...++.+++++++.+|++++.++++||+.....          ...    ...+  .+...+.+++|++++..++    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV--PMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEE--CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccc--cCCCcccEEEEcCCCCEEEEEEec
Confidence            446889999999999999987789998763110          000    0111  2455799999999999998    8


Q ss_pred             CCCCCCCCCCeEEEEeCCCC--------ce---eEEee-cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEE
Q 014007          147 GGPDPQYPLNKVMIWDDHQS--------RC---IGELS-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQI  210 (432)
Q Consensus       147 ~~~d~~~~~~~v~iwd~~~~--------~~---~~~~~-~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~  210 (432)
                      ++.|     +.|++||+.++        +.   +..+. |...|.+++|+|+ +.++++   |++|++||++++..+...
T Consensus       114 gs~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~  188 (434)
T 2oit_A          114 SEYG-----SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT  188 (434)
T ss_dssp             TTTE-----EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred             cCCC-----ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence            8888     99999998765        22   23334 7899999999997 676663   999999999998777666


Q ss_pred             eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeecc-------CCceeEEEEcCCCCEEEEEc-CCC--
Q 014007          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-------DSRIACFALTQDGQLLATSS-TKG--  280 (432)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------~~~i~~~~~sp~~~~l~~~~-~dg--  280 (432)
                      ..|...+.+++|+|+|+.++.   |+.||.|++||.+......+..|       ...|.+++|++++.++++.+ .+|  
T Consensus       189 ~~~~~~v~~v~wspdg~~las---gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~  265 (434)
T 2oit_A          189 LPSTVAVTSVCWSPKGKQLAV---GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL  265 (434)
T ss_dssp             ECGGGCEEEEEECTTSSCEEE---EETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred             cCCCCceeEEEEcCCCCEEEE---EcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence            678889999999999886653   34899999999985434444333       34899999999988775533 332  


Q ss_pred             ----ceEEEEECCCCc-----eEEEEEeC-----CCcCceEEEEECCCCCEEEEEe-CCCeEEEEEec
Q 014007          281 ----TLVRIFNTLDGT-----LLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLK  333 (432)
Q Consensus       281 ----~~i~vwd~~~~~-----~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~  333 (432)
                          . +++||++..+     ....+...     ....+...+.+-++.+++++++ ..+.|.|....
T Consensus       266 ~~~~~-v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          266 ETSPD-VVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             SSCCE-EEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             CCCCc-eEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence                3 8899998652     11111110     1112223344446767666655 55667777654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.82  E-value=2.1e-17  Score=150.30  Aligned_cols=262  Identities=8%  Similarity=0.031  Sum_probs=177.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEc----------CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007           85 PPTLLHISFNQDHGCFAAGT----------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~----------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (432)
                      ...+...++  ||+.++...          +..|.+|++++++...   +     ..+..+.|+|++..++....+..-.
T Consensus        14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l-----~~~~~~~~SpDg~~la~~~~~~~~~   83 (347)
T 2gop_A           14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---I-----ENATMPRISPDGKKIAFMRANEEKK   83 (347)
T ss_dssp             SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---E-----ESCEEEEECTTSSEEEEEEEETTTT
T ss_pred             eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---c-----ccCCCeEECCCCCEEEEEEeccCCC
Confidence            346777888  899887642          2238899988765432   2     3567789999998776654320000


Q ss_pred             CCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---C---------------------------CeEEEEEcCCC
Q 014007          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---E---------------------------QKIFVYNFADL  204 (432)
Q Consensus       155 ~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d---------------------------~~i~i~d~~~~  204 (432)
                      ...|++||+.+++......+.. +..++|+||+..++.   +                           ..|++||+.++
T Consensus        84 ~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           84 VSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred             cceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence            0358899998887766655555 999999999987762   2                           46999999888


Q ss_pred             eeeEEEeeccCCcceEEEecCCCcEEEEeecCCC----C-cEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK----G-QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d----~-~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (432)
                      +.+..+.. . .+..+.|+|++  ++++.....+    . ...+|.++++....+..+ ..+..+  +|+|++|+.++.+
T Consensus       163 ~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~  235 (347)
T 2gop_A          163 EVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKP  235 (347)
T ss_dssp             EEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECC
T ss_pred             eEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEcc
Confidence            77455555 3 77889999998  4443322111    2 344444445555555555 555554  9999988877644


Q ss_pred             --------CceEEEEECCCCceEEEEEeCCCcCceEE-EEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCC
Q 014007          280 --------GTLVRIFNTLDGTLLQEVRRGADRAEIYS-LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT  350 (432)
Q Consensus       280 --------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  350 (432)
                              .. |++||  +++... +.. .+...+.. +.|+ |+ ++++++.++.++|| +.+++              
T Consensus       236 ~~~~~~~~~~-l~~~d--~~~~~~-l~~-~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~--------------  293 (347)
T 2gop_A          236 EKKYMSEHNK-LYIYD--GKEVMG-ILD-EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE--------------  293 (347)
T ss_dssp             SSSCCCSSCE-EEEEC--SSCEEE-SST-TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS--------------
T ss_pred             ccCCccccce-EEEEC--CCceEe-ccc-cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc--------------
Confidence                    35 88888  555432 322 24467776 9999 88 88899999999999 88443              


Q ss_pred             CCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeE-EEEEec
Q 014007          351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSF-YRCQFD  410 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v-~iw~~~  410 (432)
                                            ...+..+.+.|..++|+|  ..+++++.++.. .||.++
T Consensus       294 ----------------------~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          294 ----------------------IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             ----------------------EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             ----------------------eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence                                  112334466788999999  677788877775 888887

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=2.5e-18  Score=170.37  Aligned_cols=289  Identities=11%  Similarity=-0.009  Sum_probs=188.5

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEE--cCC-cEEEEEcCCCeeEEEeecccCcceeEE---------EEeee--CCeEE
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAG--TDH-GFRIYNCDPFREIFRRDFERGGGIGVV---------EMLFR--CNILA  143 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~  143 (432)
                      ......|...|..++|++++.+++..  ..+ ...||........  ..+. .+...+.         .+.|+  ||+..
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~   92 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE--ESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGP   92 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE--EESS-CTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc--ceeC-CCCccccccccccCCccceeeeecCCCe
Confidence            34456688899999999887667766  333 4889986433332  3333 2333333         44454  77765


Q ss_pred             -Eec-CCCCCCCCCCeEEEEeCC--C-CceeEEee-----cCCceEEEEEecCccEEEe---C----------CeEEEEE
Q 014007          144 -LVG-GGPDPQYPLNKVMIWDDH--Q-SRCIGELS-----FRSEVRSVKLRRDRIIVVL---E----------QKIFVYN  200 (432)
Q Consensus       144 -~~s-~~~d~~~~~~~v~iwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~~---d----------~~i~i~d  200 (432)
                       ++. ...+     ..|+++++.  . ++......     +...+..++|+|||+.++.   +          ..|++||
T Consensus        93 ~la~~~~~~-----~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~  167 (662)
T 3azo_A           93 LLVFTHFGD-----QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP  167 (662)
T ss_dssp             EEEEEBTTT-----CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred             EEEEEECCC-----CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence             443 3334     778888876  3 44332222     3557889999999998873   4          4799999


Q ss_pred             cCC------CeeeEEEe-eccCCcceEEEecCCCcEEEEeecC-----CCCcEEEEEcc-CC---ceeeee-ccCCceeE
Q 014007          201 FAD------LKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL-----QKGQVRVEHYA-SK---RTKFIM-AHDSRIAC  263 (432)
Q Consensus       201 ~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~-~~---~~~~~~-~~~~~i~~  263 (432)
                      +.+      ++. ..+. .+...+..++|+|||+.++++....     ....|++||+. ++   ....+. .|...+..
T Consensus       168 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~  246 (662)
T 3azo_A          168 LDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ  246 (662)
T ss_dssp             TTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE
T ss_pred             CCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc
Confidence            987      543 3443 4445667789999999887654221     12479999998 45   444444 45788999


Q ss_pred             EEEcCCCCEEEEEcCCC--ceEEEEECCCCceEEEEEeCCCcCc--------eEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          264 FALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEVRRGADRAE--------IYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       264 ~~~sp~~~~l~~~~~dg--~~i~vwd~~~~~~~~~~~~~~~~~~--------i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      +.|+|||+++++++.++  . |++||+.+++.......  +...        +..++|+|+++++++++. +.++||.+.
T Consensus       247 ~~~spdg~l~~~~~~~~~~~-l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          247 AEWAPDGSLIVATDRTGWWN-LHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             EEECTTSCEEEEECTTSSCE-EEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred             eEECCCCeEEEEECCCCCeE-EEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence            99999999888888887  5 77777767765443332  1111        567899999999999998 999999654


Q ss_pred             --CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE-EEccCCCEEEEEecCCeEEEEEec
Q 014007          334 --VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV-AFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       334 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                        +++                                    +..+..|.+.+..+ +++.+.-.+++++.+....+|.++
T Consensus       323 ~~~~~------------------------------------~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          323 PESGE------------------------------------LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             TTTTE------------------------------------EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCc------------------------------------EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence              332                                    22334455556655 443333344455667777788787


Q ss_pred             CCCCC
Q 014007          411 PVNGG  415 (432)
Q Consensus       411 ~~~~~  415 (432)
                      ...++
T Consensus       367 ~~~g~  371 (662)
T 3azo_A          367 TVTGR  371 (662)
T ss_dssp             TTTCC
T ss_pred             CCCCc
Confidence            76554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=7.4e-19  Score=175.89  Aligned_cols=237  Identities=13%  Similarity=0.118  Sum_probs=167.5

Q ss_pred             EEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCC----ceEEEEEecCccEEEe------------CCeEE
Q 014007          134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS----EVRSVKLRRDRIIVVL------------EQKIF  197 (432)
Q Consensus       134 ~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~------------d~~i~  197 (432)
                      .+.|++++.+++++. |     +.|++||+.+++....+.+..    .+.+++|+|||+++++            ++.|+
T Consensus        20 ~~~~s~dg~~~~~~~-d-----~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEYLHQSA-D-----NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEEEEECT-T-----SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeEEEEcC-C-----CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            678999997776654 6     999999999998877776332    4899999999998872            37899


Q ss_pred             EEEcCCCeee--EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee--ccCCce------------
Q 014007          198 VYNFADLKLL--HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRI------------  261 (432)
Q Consensus       198 i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~i------------  261 (432)
                      +||+.+++.+  ..+   ...+..++|+|||+.++++    .++.|++||+.++....+.  ++...|            
T Consensus        94 ~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~----~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee  166 (719)
T 1z68_A           94 IYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYV----YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEE  166 (719)
T ss_dssp             EEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHH
T ss_pred             EEECCCCccccceec---CcccccceECCCCCEEEEE----ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeee
Confidence            9999988763  222   2457789999999987654    3689999999886554432  222222            


Q ss_pred             -----eEEEEcCCCCEEEEEcCCC----------------------------------ceEEEEECCCCceE--EEEEe-
Q 014007          262 -----ACFALTQDGQLLATSSTKG----------------------------------TLVRIFNTLDGTLL--QEVRR-  299 (432)
Q Consensus       262 -----~~~~~sp~~~~l~~~~~dg----------------------------------~~i~vwd~~~~~~~--~~~~~-  299 (432)
                           .+++|+|||++|++++.|.                                  . |++||+.+++..  ..+.. 
T Consensus       167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~  245 (719)
T 1z68_A          167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR-IFIIDTTYPAYVGPQEVPVP  245 (719)
T ss_dssp             TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE-EEEEESSCHHHHCCEECCCC
T ss_pred             cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE-EEEEECCCCCccceeEccCC
Confidence                 4899999999999987652                                  5 889999887753  12211 


Q ss_pred             ---CCCcCceEEEEECCCCCEEEEEeCC----CeEEEEE----ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceee
Q 014007          300 ---GADRAEIYSLAFSSNAQWLAVSSDK----GTVHVFN----LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS  368 (432)
Q Consensus       300 ---~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (432)
                         ..+...+..++||||++++++....    ..|++||    +.+++.....                           
T Consensus       246 ~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~---------------------------  298 (719)
T 1z68_A          246 AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ---------------------------  298 (719)
T ss_dssp             HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG---------------------------
T ss_pred             ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE---------------------------
Confidence               1255678999999998877775432    2488888    6655422100                           


Q ss_pred             cceeeEEEEecCCCce-----EEEEccCCCEEEE--EecCCeEEEEEecCCCCC
Q 014007          369 SEWSVAQFRLVEGSPY-----IVAFGHQKNTVVI--LGMDGSFYRCQFDPVNGG  415 (432)
Q Consensus       369 ~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~--~~~dg~v~iw~~~~~~~~  415 (432)
                          -.....|.+.+.     .++|+|||+.|+.  ...+|...||.++...++
T Consensus       299 ----~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          299 ----EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             ----EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             ----ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence                000134555565     7899999996654  556787777777765543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=1.3e-16  Score=141.02  Aligned_cols=241  Identities=13%  Similarity=0.202  Sum_probs=175.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecc---cCcceeEEEEee-eCCeEEEecCCC-CCCCCC
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE---RGGGIGVVEMLF-RCNILALVGGGP-DPQYPL  155 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~-~~~~~~~~s~~~-d~~~~~  155 (432)
                      .++-..+.+++++++|+++++.. ++.|.+|+.+. +........   .++......+++ .+++.++++... +     
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~-----   99 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-----   99 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-----
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC-----
Confidence            44567899999999999888776 55599999763 332111110   123356788888 477777776642 5     


Q ss_pred             CeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEee--ccCCcceEEEecCCCc
Q 014007          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGS  228 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  228 (432)
                      +.|++|| .+++.+..+.  +...+.++++++++.++++   ++.|++||. +++.+..+..  +......++++++++ 
T Consensus       100 ~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~-  176 (286)
T 1q7f_A          100 HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE-  176 (286)
T ss_dssp             CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE-
T ss_pred             CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCC-
Confidence            8999999 6777777775  3467899999999987775   578999995 4666665542  233466789999875 


Q ss_pred             EEEEeecCCCCcEEEEEccCCceeeeecc--CCceeEEEEcCCCCEEEEEcCCC-ceEEEEECCCCceEEEEEeCCCcCc
Q 014007          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRRGADRAE  305 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg-~~i~vwd~~~~~~~~~~~~~~~~~~  305 (432)
                      ++++  ...++.|.+||.....+..+..+  ...+..++++++|+++++...++ . |++|| .+++.+..+..+.....
T Consensus       177 l~v~--~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~-~~g~~~~~~~~~~~~~~  252 (286)
T 1q7f_A          177 IFIS--DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFT-QDGQLISALESKVKHAQ  252 (286)
T ss_dssp             EEEE--EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEEC-TTSCEEEEEEESSCCSC
T ss_pred             EEEE--ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEEC-CCCCEEEEEcccCCCCc
Confidence            4443  23578999999877655555433  36789999999999888888775 8 99999 46778888876433345


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +.+++++|+|+++++ +.+++|++|++....
T Consensus       253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             ceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            889999999987776 579999999986643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=1.5e-16  Score=140.52  Aligned_cols=235  Identities=12%  Similarity=0.129  Sum_probs=171.9

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeec-------CCceEEEEEe-cCccEEEe----CCe
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-------RSEVRSVKLR-RDRIIVVL----EQK  195 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~-~~~~~~~~----d~~  195 (432)
                      +-.....+++++++.++++...+     +.|.+||.. ++.+..+..       ...+.++++. +++.++++    ++.
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~-----~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNN-----HRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGG-----TEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             ccCCCceEEECCCCCEEEEECCC-----CEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence            44567889999998888887666     899999976 666666542       2468899994 77776663    578


Q ss_pred             EEEEEcCCCeeeEEEee-ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee--ccCCceeEEEEcCCCCE
Q 014007          196 IFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQL  272 (432)
Q Consensus       196 i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~sp~~~~  272 (432)
                      |++|| .+++.+..+.. .......++++++++ ++++.  ..++.|.+||........+.  .+...+..++++++|++
T Consensus       102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~--~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVE--CKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEI  177 (286)
T ss_dssp             EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEE--TTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             EEEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEE--CCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCE
Confidence            99999 56777666643 224566789999885 44432  35789999997765555543  34557899999999998


Q ss_pred             EEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC-eEEEEEecCCCCCCCCCCCCCCCCCC
Q 014007          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG-TVHVFNLKVNSGSARSEPRSTSDPTL  351 (432)
Q Consensus       273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~  351 (432)
                      +++...++. |++||. +++.+..+....+...+..++++++|+++++...++ .|.+||.. ++.              
T Consensus       178 ~v~~~~~~~-i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~--------------  240 (286)
T 1q7f_A          178 FISDNRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQL--------------  240 (286)
T ss_dssp             EEEEGGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCE--------------
T ss_pred             EEEECCCCE-EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCE--------------
Confidence            888888888 999996 666666665322235789999999999888887776 99999954 331              


Q ss_pred             CCCCceeEeecccceeecceeeEEEEecC--CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          352 PTSSLSFIKGVLPKYFSSEWSVAQFRLVE--GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                           +..+..+.  ..+..++++|+|+++++ +.|+.|++|++..
T Consensus       241 ---------------------~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          241 ---------------------ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             ---------------------EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             ---------------------EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence                                 22233332  24678999999987766 6799999999854

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=8.2e-18  Score=168.58  Aligned_cols=238  Identities=13%  Similarity=0.104  Sum_probs=166.0

Q ss_pred             eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCC-----ceEEEEEecCccEEEe--C---------
Q 014007          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRS-----EVRSVKLRRDRIIVVL--E---------  193 (432)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~-----~v~~~~~~~~~~~~~~--d---------  193 (432)
                      ....+.|++++.+++++  |     +.|++||+.++++...+. +..     ....+.|+|||++++.  +         
T Consensus        18 ~~~~~~w~~dg~~~~~~--~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--E-----NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--T-----TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             cccccEECCCCcEEEEc--C-----CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence            45578999999999986  6     999999999998877766 332     2245889999998873  2         


Q ss_pred             -CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee--ccCCce---------
Q 014007          194 -QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRI---------  261 (432)
Q Consensus       194 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~i---------  261 (432)
                       +.+.+||+.+++... +..+...+...+|+|||+.++++    .++.|++|++.++....+.  ++...+         
T Consensus        91 ~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~----~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           91 TASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV----WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             EEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             ceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE----ECCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence             578899999987643 55556678899999999988665    3689999999886554432  222222         


Q ss_pred             --------eEEEEcCCCCEEEEEcCCC------------------------------------ceEEEEECCC---Cc--
Q 014007          262 --------ACFALTQDGQLLATSSTKG------------------------------------TLVRIFNTLD---GT--  292 (432)
Q Consensus       262 --------~~~~~sp~~~~l~~~~~dg------------------------------------~~i~vwd~~~---~~--  292 (432)
                              ..+.|||||++||.++.|.                                    . |++||+.+   ++  
T Consensus       166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~-l~v~d~~~~~~~~~~  244 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK-FFVVNTDSLSSVTNA  244 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE-EEEEETTSCCSSSCC
T ss_pred             cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE-EEEEECCCCCCCCcc
Confidence                    3589999999999875321                                    4 88899988   73  


Q ss_pred             eEEEEEeC----CCcCceEEEEECCCCCEEEEEeC----CCeEEEEEecCCC----CCCCCCCCCCCCCCCCCCCceeEe
Q 014007          293 LLQEVRRG----ADRAEIYSLAFSSNAQWLAVSSD----KGTVHVFNLKVNS----GSARSEPRSTSDPTLPTSSLSFIK  360 (432)
Q Consensus       293 ~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  360 (432)
                      ....+...    .+...+..++|+|||+.++....    +..|++||+.+++    +.....                  
T Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~------------------  306 (740)
T 4a5s_A          245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ------------------  306 (740)
T ss_dssp             CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC------------------
T ss_pred             eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE------------------
Confidence            22333321    14567999999999997766542    3479999999876    211000                  


Q ss_pred             ecccceeecceeeEEEEecCCCce-----EEEEccCCCEEE-EEe-cCCeEEEEEecCC
Q 014007          361 GVLPKYFSSEWSVAQFRLVEGSPY-----IVAFGHQKNTVV-ILG-MDGSFYRCQFDPV  412 (432)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~-~~~-~dg~v~iw~~~~~  412 (432)
                                  + .-..|.+.|.     .++|+|||+.|+ ..+ .+|.-.||-++..
T Consensus       307 ------------l-~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~  352 (740)
T 4a5s_A          307 ------------H-IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID  352 (740)
T ss_dssp             ------------E-EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred             ------------e-eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence                        0 0123444444     689999999877 555 4666555555554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=8.2e-17  Score=145.19  Aligned_cols=245  Identities=11%  Similarity=0.093  Sum_probs=174.7

Q ss_pred             ceeEEEEeeeCCeEEEecCCCCCCC-------------------CCCeEEEEeCCCCceeEEee--cCCceEEEEEecCc
Q 014007          129 GIGVVEMLFRCNILALVGGGPDPQY-------------------PLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDR  187 (432)
Q Consensus       129 ~~~v~~~~~~~~~~~~~s~~~d~~~-------------------~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~  187 (432)
                      -..+..+++++++.++++...+...                   ..+.|.+||..+++.+..+.  +-.....++++++|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3567888888888887776654100                   11479999998898877665  34578999999999


Q ss_pred             cEEEe---CCeEEEEEcCCCe-eeEEEe---------eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee
Q 014007          188 IIVVL---EQKIFVYNFADLK-LLHQIE---------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI  254 (432)
Q Consensus       188 ~~~~~---d~~i~i~d~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~  254 (432)
                      .++++   ++.|++||..... .+..+.         .+......++++|+...++++. +..++.|++||.+...+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d-~~~~~~I~~~~~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD-GYCNSRIVQFSPSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE-CSSCCEEEEECTTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe-CCCCCeEEEEcCCCCEEEEe
Confidence            87775   5799999975432 445442         1222456799999555565543 22578999999666555554


Q ss_pred             ecc----------CCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE--
Q 014007          255 MAH----------DSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS--  321 (432)
Q Consensus       255 ~~~----------~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--  321 (432)
                      ...          -.....++++|+ +.++++...++. |++||..+++.+..+....+...+..++|+| +..+.+.  
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~  259 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK  259 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence            322          234889999998 777778788888 9999998899998887554556789999999 4444333  


Q ss_pred             -----eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE---EecCCCceEEEEccCCC
Q 014007          322 -----SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF---RLVEGSPYIVAFGHQKN  393 (432)
Q Consensus       322 -----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~  393 (432)
                           ..+.+|++||..+++.+.                                   .+   ..+...+..++++|+|+
T Consensus       260 ~~v~~~~~~~v~~~~~~~g~~~~-----------------------------------~~~~~~~~~~~p~~ia~~~dG~  304 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFSSGEIID-----------------------------------VFKPVRKHFDMPHDIVASEDGT  304 (329)
T ss_dssp             CCTTCSCCCCEEEEETTTCCEEE-----------------------------------EECCSSSCCSSEEEEEECTTSE
T ss_pred             EEeccCCCcEEEEEEcCCCeEEE-----------------------------------EEcCCCCccCCeeEEEECCCCC
Confidence                 334589999998876321                                   11   13345688999999998


Q ss_pred             EEEEEecCCeEEEEEecC
Q 014007          394 TVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       394 ~l~~~~~dg~v~iw~~~~  411 (432)
                      .+++...++.|++|+++.
T Consensus       305 lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          305 VYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEESSSCCEEEEEEEE
T ss_pred             EEEEECCCCEEEEEeCCc
Confidence            888888899999999854

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=3.4e-16  Score=141.16  Aligned_cols=241  Identities=10%  Similarity=0.051  Sum_probs=176.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC-------------------------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDH-------------------------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC  139 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~-------------------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~  139 (432)
                      -+.+.+|+++|+|+++++...+                         .|.+||.++++..  ..+..++-.....+++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--QSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--EEECTTTCSSEEEEEECT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--eccCCCccCCceEEEECC
Confidence            4679999999999999888754                         4999998777654  333223445778899999


Q ss_pred             CeEEEecCCCCCCCCCCeEEEEeCCCCc-eeEEee----------cCCceEEEEEec-CccEEEe----CCeEEEEEcCC
Q 014007          140 NILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELS----------FRSEVRSVKLRR-DRIIVVL----EQKIFVYNFAD  203 (432)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~-~~~~~~----------~~~~v~~~~~~~-~~~~~~~----d~~i~i~d~~~  203 (432)
                      ++.++++...+     +.|++||..... .+..+.          +-.....++++| ++.++++    ++.|++|| .+
T Consensus       101 ~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A          101 DGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             TSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             CCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence            99888888777     899999975432 455552          233688999999 7877774    45799999 56


Q ss_pred             CeeeEEEeecc----------CCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cceeee--eccCCceeEEEEcC--
Q 014007          204 LKLLHQIETIA----------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFI--MAHDSRIACFALTQ--  268 (432)
Q Consensus       204 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~--~~~~~~i~~~~~sp--  268 (432)
                      ++.+..+....          .....+++++++..++++.  ..++.|++||..+ ..+..+  ..+...+..++|+|  
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d--~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~  252 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD--RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGF  252 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE--TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTE
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE--CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCE
Confidence            77777664322          2256799999966776653  4678999999985 444444  24567788999999  


Q ss_pred             ----CCCEEEEEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          269 ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       269 ----~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                          +|+.+++...+.. |++||..+++.+..+... .+...+..++++|+|.++++...+++|++|++....
T Consensus       253 ~~~~~g~~~v~~~~~~~-v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~  324 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQ-GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM  324 (329)
T ss_dssp             EEEEECCCCTTCSCCCC-EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred             EEEeCCCEEeccCCCcE-EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence                3333333334457 999999999999887421 234678999999999888888889999999997643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=1.4e-15  Score=136.91  Aligned_cols=265  Identities=10%  Similarity=0.067  Sum_probs=184.2

Q ss_pred             CCcEEEEEcCCCeeEEEeecc-----cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceE
Q 014007          105 DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR  179 (432)
Q Consensus       105 ~~~i~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~  179 (432)
                      +++|.+||.++++..  ..+.     .........+.+..+..+++.. .+     +.|.+||..+++.+.++.......
T Consensus        16 ~~~l~~~d~~t~~~~--~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~-~~-----~~v~viD~~t~~~~~~i~~~~~p~   87 (328)
T 3dsm_A           16 NATLSYYDPATCEVE--NEVFYRANGFKLGDVAQSMVIRDGIGWIVVN-NS-----HVIFAIDINTFKEVGRITGFTSPR   87 (328)
T ss_dssp             CBEEEEEETTTTEEE--CSHHHHHHSSCCBSCEEEEEEETTEEEEEEG-GG-----TEEEEEETTTCCEEEEEECCSSEE
T ss_pred             CceEEEEECCCCEEh--hhhHhhhcCcccCccceEEEEECCEEEEEEc-CC-----CEEEEEECcccEEEEEcCCCCCCc
Confidence            345999999887654  2221     0112345667777666666655 34     899999999999999888777889


Q ss_pred             EEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccC-----CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007          180 SVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN-----PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (432)
Q Consensus       180 ~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~  251 (432)
                      .+++++++++.++   ++.|.+||+.+++....+.....     ....+++  +++.++++..+ .++.|.++|..+..+
T Consensus        88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~-~~~~v~viD~~t~~~  164 (328)
T 3dsm_A           88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS-YQNRILKIDTETDKV  164 (328)
T ss_dssp             EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT-TCCEEEEEETTTTEE
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC-CCCEEEEEECCCCeE
Confidence            9999988865554   68999999999988877765440     2335666  56666665321 478999999998655


Q ss_pred             eeeeccCCceeEEEEcCCCCEEEEEcCC----------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007          252 KFIMAHDSRIACFALTQDGQLLATSSTK----------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (432)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d----------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  321 (432)
                      ............++++|+|++++++..+          +. |.++|..+++....+... .......++|+|++++|+++
T Consensus       165 ~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~  242 (328)
T 3dsm_A          165 VDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWI  242 (328)
T ss_dssp             EEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEE
T ss_pred             EEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEE
Confidence            4333334456789999999977776654          67 999999999988777642 12368999999999998887


Q ss_pred             eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE---
Q 014007          322 SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL---  398 (432)
Q Consensus       322 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---  398 (432)
                      ..  .|.+||..+++.....                    .             +..+......++++|++..|.++   
T Consensus       243 ~~--~v~~~d~~t~~~~~~~--------------------~-------------~~~~~~~p~gi~vdp~~g~lyva~~~  287 (328)
T 3dsm_A          243 NN--DIWRMPVEADRVPVRP--------------------F-------------LEFRDTKYYGLTVNPNNGEVYVADAI  287 (328)
T ss_dssp             SS--SEEEEETTCSSCCSSC--------------------S-------------BCCCSSCEEEEEECTTTCCEEEEECT
T ss_pred             cc--EEEEEECCCCceeeee--------------------e-------------ecCCCCceEEEEEcCCCCeEEEEccc
Confidence            54  8999999887632100                    0             00012347789999955545444   


Q ss_pred             --ecCCeEEEEEecCCCCCcceEe
Q 014007          399 --GMDGSFYRCQFDPVNGGEMTQL  420 (432)
Q Consensus       399 --~~dg~v~iw~~~~~~~~~~~~~  420 (432)
                        ..+|.|.+|+.  . |+.+..+
T Consensus       288 ~y~~~~~V~v~d~--~-g~~~~~i  308 (328)
T 3dsm_A          288 DYQQQGIVYRYSP--Q-GKLIDEF  308 (328)
T ss_dssp             TSSSEEEEEEECT--T-CCEEEEE
T ss_pred             ccccCCEEEEECC--C-CCEEEEE
Confidence              46888998765  3 5544443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=3.5e-17  Score=151.24  Aligned_cols=244  Identities=13%  Similarity=0.065  Sum_probs=162.4

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeE--EEEeeeCCeEEEec---------
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGV--VEMLFRCNILALVG---------  146 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~s---------  146 (432)
                      .+...+...+..+.|+|||+.|+.+..+ .|++||+.+++.......   +...+  ....+++++..++.         
T Consensus        74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~  150 (388)
T 3pe7_A           74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV---PAEWVGYGTWVANSDCTKLVGIEIRREDWV  150 (388)
T ss_dssp             ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC---CTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred             EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec---hhhcccccceeECCCCCeeccccccCcccc
Confidence            3444455555567899999999988854 599999998876644333   22223  23345788777762         


Q ss_pred             -------------CCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEec-CccEEEe--C-------CeEEEEEcCC
Q 014007          147 -------------GGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVVL--E-------QKIFVYNFAD  203 (432)
Q Consensus       147 -------------~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~--d-------~~i~i~d~~~  203 (432)
                                   ...+     ..|++||+.+++......+...+..+.|+| |+..++.  +       ..|.++|+..
T Consensus       151 ~~~~~~~~~~~~~~~~~-----~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~  225 (388)
T 3pe7_A          151 PLTDWKKFHEFYFTKPC-----CRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG  225 (388)
T ss_dssp             CCCSHHHHHHHGGGCCC-----EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS
T ss_pred             cccccchhhhhhccCCc-----ceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence                         2333     789999999987666666778899999999 9987762  2       2788888765


Q ss_pred             CeeeEEEeecc--CCcceEEEecCCCcEEEEeecCCC--CcEEEEEccCCceeeeeccCCc------eeEEEEcCCCCEE
Q 014007          204 LKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQK--GQVRVEHYASKRTKFIMAHDSR------IACFALTQDGQLL  273 (432)
Q Consensus       204 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d--~~i~i~d~~~~~~~~~~~~~~~------i~~~~~sp~~~~l  273 (432)
                      ++. ..+..+.  ..+....|+|+|+.+++++.....  ..|++||+.++....+......      ...+.|+|||+.|
T Consensus       226 ~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l  304 (388)
T 3pe7_A          226 TNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDA  304 (388)
T ss_dssp             CCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC
T ss_pred             Cce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcc
Confidence            443 3333333  235568899999988665432122  2499999998765544332221      1223799999988


Q ss_pred             EEE---------cCCCceEEEEECCCCceEEEEEeCCCcC-----------ceEEEEECCCCCEEEEEe-CCCeEEEEEe
Q 014007          274 ATS---------STKGTLVRIFNTLDGTLLQEVRRGADRA-----------EIYSLAFSSNAQWLAVSS-DKGTVHVFNL  332 (432)
Q Consensus       274 ~~~---------~~dg~~i~vwd~~~~~~~~~~~~~~~~~-----------~i~~~~~s~~~~~l~~~~-~dg~i~iwd~  332 (432)
                      +..         ..+.. |++||+.+++.. .+..+  ..           .+..++|+|||+.|+..+ .+|...||.+
T Consensus       305 ~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~--~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          305 PVDVQDDSGYKIENDPF-LYVFNMKNGTQH-RVARH--DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             ------------CCCCE-EEEEETTTTEEE-EEEEC--CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             eeEeeeccccccCCCCE-EEEEeccCCceE-Eeccc--cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            754         44557 999999887664 44432  23           478899999999888766 5677777766


Q ss_pred             cCC
Q 014007          333 KVN  335 (432)
Q Consensus       333 ~~~  335 (432)
                      +-.
T Consensus       381 ~l~  383 (388)
T 3pe7_A          381 TLP  383 (388)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=4.6e-17  Score=148.55  Aligned_cols=230  Identities=12%  Similarity=0.093  Sum_probs=158.6

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecccC---cceeEEEEeeeCCeEEEecCC--CCCCC
Q 014007           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERG---GGIGVVEMLFRCNILALVGGG--PDPQY  153 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~s~~--~d~~~  153 (432)
                      .++|+|||++|+++.           ++.|.+||..+.+......+...   +......+.+++++.+++.++  .+   
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~---  130 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPA---  130 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSS---
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCC---
Confidence            899999999988875           23499999987776533332101   123456788999998777654  24   


Q ss_pred             CCCeEEEEeCCCCceeEE-eecCCceEEEEEecCc--cEEE--eCCeEEEEEcCC-CeeeEEE------eeccCCcceEE
Q 014007          154 PLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDR--IIVV--LEQKIFVYNFAD-LKLLHQI------ETIANPKGLCA  221 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~-~~~~~~~------~~~~~~~~~~~  221 (432)
                        +.|.+||+.+++.+.. +...+. ..+.+.|++  .+++  .||.+.+|++.. ++.....      .....++ .+.
T Consensus       131 --~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~  206 (361)
T 2oiz_A          131 --TSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIA  206 (361)
T ss_dssp             --EEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSC
T ss_pred             --CeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEE
Confidence              7999999999998888 664332 335667765  2333  288888888865 5544221      1112222 344


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccCCceeeeec---------c----CCceeEEEEcCCCCEEEEEcC----------
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA---------H----DSRIACFALTQDGQLLATSST----------  278 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---------~----~~~i~~~~~sp~~~~l~~~~~----------  278 (432)
                      +++++..+++..   .++.|.++|+..........         +    ......++|+|+++.++++..          
T Consensus       207 ~~~~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~  283 (361)
T 2oiz_A          207 PALDKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKF  283 (361)
T ss_dssp             CEECSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTC
T ss_pred             ecccCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccC
Confidence            567777666554   57899999987643322110         0    111223789999888877643          


Q ss_pred             -CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          279 -KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       279 -dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                       .+. |.+||+.+++.+.++..+   . +.+++|+|||++|++++. +.|.+||..++
T Consensus       284 ~~~~-v~viD~~t~~~v~~i~~~---~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          284 PAAE-IWVMDTKTKQRVARIPGR---D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             CCSE-EEEEETTTTEEEEEEECT---T-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             CCce-EEEEECCCCcEEEEEecC---C-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence             346 999999999999999854   3 899999999999998886 99999999998

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.77  E-value=3.1e-16  Score=141.75  Aligned_cols=268  Identities=14%  Similarity=0.088  Sum_probs=180.6

Q ss_pred             CCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      ..|.++.|++++..++... ++.++.|.   .+..  ..+. .+...+..++|++++.+++++..+     +.|.+||..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~-~~~~~~~~~~~~~~g~l~~~~~~~-----~~i~~~d~~   74 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPW--LEIS-KKGLQLEGLNFDRQGQLFLLDVFE-----GNIFKINPE   74 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEE--EEEE-SSCCCEEEEEECTTSCEEEEETTT-----CEEEEECTT
T ss_pred             cccceeeecCCccceeEEeecccCcccc---ccee--EEEe-ccCccccCcEECCCCCEEEEECCC-----CEEEEEeCC
Confidence            4577888999887665544 55688883   2222  2332 345566888999999888777766     899999998


Q ss_pred             CCceeEEee-cCCceEEEEEecCccEEEe---C----CeEEEEEcCCCeeeEEEe--eccCCcceEEEecCCCcEEEEee
Q 014007          165 QSRCIGELS-FRSEVRSVKLRRDRIIVVL---E----QKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       165 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d----~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      +++...... +...+.++++++++.+++.   +    +.|.+||..+++....+.  .....+..++++++++ ++++..
T Consensus        75 ~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~  153 (333)
T 2dg1_A           75 TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDF  153 (333)
T ss_dssp             TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEEC
T ss_pred             CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEec
Confidence            887665543 6678999999999987664   2    489999988766543332  1234566789999875 444431


Q ss_pred             cC----CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEE-EEcCCCceEEEEECCC-CceEEEE-----EeCCCc
Q 014007          235 GL----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLD-GTLLQEV-----RRGADR  303 (432)
Q Consensus       235 g~----~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~~dg~~i~vwd~~~-~~~~~~~-----~~~~~~  303 (432)
                      ..    ..+.|..+|..++....+..+...+..++|+|+|++|+ +.+.++. |++||+.+ ++.+..+     ......
T Consensus       154 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~  232 (333)
T 2dg1_A          154 RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFGATIPYYFTGH  232 (333)
T ss_dssp             CCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred             cccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCCCcCcccccceEEEecCCC
Confidence            10    13556666666555555544445688999999998654 4556778 99999864 4433222     111111


Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC--
Q 014007          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG--  381 (432)
Q Consensus       304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  381 (432)
                      ..+..++++++|+++++...++.|.+||.+ ++.                                   +..+..+..  
T Consensus       233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~-----------------------------------~~~~~~~~~~~  276 (333)
T 2dg1_A          233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYP-----------------------------------IGQILIPGRDE  276 (333)
T ss_dssp             SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCE-----------------------------------EEEEECTTGGG
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCE-----------------------------------EEEEEcCCCcc
Confidence            367889999999988887788999999984 331                                   222333322  


Q ss_pred             ----CceEEEEccCCCEEEEEecCC
Q 014007          382 ----SPYIVAFGHQKNTVVILGMDG  402 (432)
Q Consensus       382 ----~v~~~~~s~~~~~l~~~~~dg  402 (432)
                          .+..++|+||++.|++++.+|
T Consensus       277 g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          277 GHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             ccccCcceEEECCCCCEEEEEeCcc
Confidence                588999999988887776663

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=1.1e-16  Score=146.14  Aligned_cols=269  Identities=11%  Similarity=0.045  Sum_probs=181.3

Q ss_pred             CCCEEEEEc-------CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC----------CCCCCCCCeE
Q 014007           96 DHGCFAAGT-------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLNKV  158 (432)
Q Consensus        96 ~~~~l~~~~-------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~~~v  158 (432)
                      +++++.+..       ++.|.+||..+++..  ..+. .+...  .+++++++..++.++          .+     +.|
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~--~~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~-----~~v   83 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFL--GMVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRS-----DVV   83 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEE--EEEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEE-----EEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEE--EEec-CCCCC--ceEECCCCCEEEEEEecccccccCCCC-----CEE
Confidence            555555542       456999998887765  4454 23333  889999987776654          24     679


Q ss_pred             EEEeCCCCceeEEee-c------CCceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEE-EeeccCCcceEEEecC
Q 014007          159 MIWDDHQSRCIGELS-F------RSEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQG  225 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~------~~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~  225 (432)
                      .+||..+++.+.++. .      ......++++|||++++.     ++.|.+||+.+++.+.. +... . ...+.+.|+
T Consensus        84 ~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~  161 (361)
T 2oiz_A           84 EVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPN  161 (361)
T ss_dssp             EEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTT
T ss_pred             EEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCC
Confidence            999999999888876 2      245778999999998873     46899999999988776 4321 1 122557787


Q ss_pred             CCcEEEEeecCCCCcEEEEEccC-Ccee-------eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce--EE
Q 014007          226 VGSLVLVCPGLQKGQVRVEHYAS-KRTK-------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQ  295 (432)
Q Consensus       226 ~~~~~~~~~g~~d~~i~i~d~~~-~~~~-------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~--~~  295 (432)
                      +...+++.  +.||.+.+|++.. +...       .+.....++ .+.+++++..++..+.++. |.++|+...+.  ..
T Consensus       162 ~~~~~~~~--~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-v~v~d~~~~~~~~~~  237 (361)
T 2oiz_A          162 RPRSFMTI--CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGN-VYSADFSGDEVKVDG  237 (361)
T ss_dssp             SSSEEEEE--ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSE-EEEEECSSSSCEEEE
T ss_pred             CCeeEEEE--CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCe-EEEEEecCCCceecc
Confidence            76555543  3588898888765 3322       112222222 3344677878888888898 99999876542  22


Q ss_pred             EEEeCC----C----cCceEEEEECCCCCEEEEEeC-----------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007          296 EVRRGA----D----RAEIYSLAFSSNAQWLAVSSD-----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL  356 (432)
Q Consensus       296 ~~~~~~----~----~~~i~~~~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  356 (432)
                      .+....    .    ......++|+|+++.++++..           .+.|.+||+.+.+.                   
T Consensus       238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-------------------  298 (361)
T 2oiz_A          238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-------------------  298 (361)
T ss_dssp             EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-------------------
T ss_pred             cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-------------------
Confidence            222100    0    011123789999888777643           35899999988762                   


Q ss_pred             eeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCC--CcceEe
Q 014007          357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG--GEMTQL  420 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~--~~~~~~  420 (432)
                                      +.++..+.  +..++|+|||++|++++. +.|.+|+.  .++  +.+..+
T Consensus       299 ----------------v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~--~t~~l~~~~~i  343 (361)
T 2oiz_A          299 ----------------VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI--SQPEPKLLRTI  343 (361)
T ss_dssp             ----------------EEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEEC--SSSSCEEEEEE
T ss_pred             ----------------EEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEEC--CCCcceeeEEe
Confidence                            44566665  899999999999998887 99999865  445  544443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=3.6e-17  Score=162.07  Aligned_cols=252  Identities=9%  Similarity=0.030  Sum_probs=171.7

Q ss_pred             CcceeEEEEeeeCCeEEEecC--CCCCCCCCCeEEEEeCCCCceeEEee-cCCceE---------EEEEe--cCccE-EE
Q 014007          127 GGGIGVVEMLFRCNILALVGG--GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVR---------SVKLR--RDRII-VV  191 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~--~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~---------~~~~~--~~~~~-~~  191 (432)
                      +|...+..+.++++..+++..  +.+     +...||....+.....+. +...+.         ...|+  |||.. ++
T Consensus        21 ~~~~~~~~~~~s~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           21 SRSGRPACVGAVGDEVWWVAPRPAEA-----GRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HTCSCCEEEEEETTEEEEEEEETTTT-----TEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             hcCCccceeEEcCCeEEEEecCcccC-----CcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            467788999999999998887  656     889999865444445554 555555         56666  99887 66


Q ss_pred             -e---CCeEEEEEcC--C-CeeeEEEee-----ccCCcceEEEecCCCcEEEEeec-------CCCCcEEEEEccC----
Q 014007          192 -L---EQKIFVYNFA--D-LKLLHQIET-----IANPKGLCAVSQGVGSLVLVCPG-------LQKGQVRVEHYAS----  248 (432)
Q Consensus       192 -~---d~~i~i~d~~--~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g-------~~d~~i~i~d~~~----  248 (432)
                       +   +..|+++++.  . ++ ...+..     +...+..++|+|||+.++++...       .....|++||+.+    
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             EEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence             3   3567777765  2 33 344443     34456789999999987765421       1115899999988    


Q ss_pred             --Cceeeee-ccCCceeEEEEcCCCCEEEEEcCCC--------ceEEEEECC-CCc--eEEEEEeCCCcCceEEEEECCC
Q 014007          249 --KRTKFIM-AHDSRIACFALTQDGQLLATSSTKG--------TLVRIFNTL-DGT--LLQEVRRGADRAEIYSLAFSSN  314 (432)
Q Consensus       249 --~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg--------~~i~vwd~~-~~~--~~~~~~~~~~~~~i~~~~~s~~  314 (432)
                        +....+. .+...+..++|+|||++|+.++.++        . |++||+. +++  ....+..+ +...+..+.|+||
T Consensus       175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~-i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spd  252 (662)
T 3azo_A          175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE-LKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPD  252 (662)
T ss_dssp             CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE-EEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTT
T ss_pred             cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE-EEEEEECCCCcccccEEeCCC-CCceEcceEECCC
Confidence              6777776 6777888999999999999877553        5 9999998 562  33334332 3578999999999


Q ss_pred             CCEEEEEeCCC--eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007          315 AQWLAVSSDKG--TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK  392 (432)
Q Consensus       315 ~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  392 (432)
                      |++++++..++  .|++||+.+++.......+.                   ......|        .-.+..++|++++
T Consensus       253 g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-------------------~~~~p~w--------~~~~~~~~~~~~~  305 (662)
T 3azo_A          253 GSLIVATDRTGWWNLHRVDPATGAATQLCRREE-------------------EFAGPLW--------TPGMRWFAPLANG  305 (662)
T ss_dssp             SCEEEEECTTSSCEEEEECTTTCCEEESSCCSS-------------------BSSCCCC--------STTCCSEEECTTS
T ss_pred             CeEEEEECCCCCeEEEEEECCCCceeecccccc-------------------cccCccc--------cccCceEeEeCCC
Confidence            99888888888  56666654544211100000                   0000000        0014568999999


Q ss_pred             CEEEEEecCCeEEEEEecCCCC
Q 014007          393 NTVVILGMDGSFYRCQFDPVNG  414 (432)
Q Consensus       393 ~~l~~~~~dg~v~iw~~~~~~~  414 (432)
                      +++++++. |.++||.++...+
T Consensus       306 ~~~~~~~~-~~~~l~~~d~~~~  326 (662)
T 3azo_A          306 LIAVVHGK-GAAVLGILDPESG  326 (662)
T ss_dssp             CEEEEEBS-SSCEEEEEETTTT
T ss_pred             EEEEEEEc-CccEEEEEECCCC
Confidence            99999999 9999998887644

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.76  E-value=2.3e-15  Score=144.34  Aligned_cols=318  Identities=11%  Similarity=0.071  Sum_probs=207.4

Q ss_pred             CCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC--CCceeEE
Q 014007           95 QDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGE  171 (432)
Q Consensus        95 ~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~--~~~~~~~  171 (432)
                      +.+.++++.. ++.|.++|.++++..  ..+.  .......+.+++++.+++.++.+     +.|.+||+.  +++.+.+
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~--~~i~--~g~~p~~v~~SpDGr~lyv~~~d-----g~V~viD~~~~t~~~v~~  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIK--TVLD--TGYAVHISRLSASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAE  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEE--EEEE--CSSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCCEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEE--EEEe--CCCCccceEECCCCCEEEEEcCC-----CeEEEEECCCCCCcEeEE
Confidence            4344455555 445999999888766  3443  23345588999999888877777     999999996  7888888


Q ss_pred             eecCCceEEEEEe----cCccEEEe----CCeEEEEEcCCCeeeEEEeecc----------C-CcceEEEecCCCcEEEE
Q 014007          172 LSFRSEVRSVKLR----RDRIIVVL----EQKIFVYNFADLKLLHQIETIA----------N-PKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       172 ~~~~~~v~~~~~~----~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~  232 (432)
                      +........++|+    |||++++.    ++.|.++|..+.+.++.+....          . .+..+..++++..+++.
T Consensus       236 i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          236 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             EecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence            8866677899999    69988773    7899999999999888775421          1 34567777777655544


Q ss_pred             eecCCCCcEEEEEccCCce-e-eeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEe-CC--CcCce
Q 014007          233 CPGLQKGQVRVEHYASKRT-K-FIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRR-GA--DRAEI  306 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~~-~-~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~-~~--~~~~i  306 (432)
                      .  ...|.|.++|...... . ...........+.|+|+|++|+++. .++. |.++|+.+++.+..+.. +.  |.+.-
T Consensus       316 ~--~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~i~vgg~~Phpg~g  392 (567)
T 1qks_A          316 V--KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGRG  392 (567)
T ss_dssp             E--TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred             e--cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEEEeccCcCCCCccc
Confidence            3  4789999999876321 1 1123445677899999999887665 4566 99999999998888875 32  32222


Q ss_pred             EEEEECCCCCEE-EEEe-CCCeEEEEEecC-------CCCCCCCCCCCCC---CCCCCCCCceeEeec-cc---------
Q 014007          307 YSLAFSSNAQWL-AVSS-DKGTVHVFNLKV-------NSGSARSEPRSTS---DPTLPTSSLSFIKGV-LP---------  364 (432)
Q Consensus       307 ~~~~~s~~~~~l-~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~---------  364 (432)
                      ..+ ++|++..+ +++. .++.|.++|..+       .+.++.+......   +...+++...+.... -|         
T Consensus       393 ~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~  471 (567)
T 1qks_A          393 ANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA  471 (567)
T ss_dssp             EEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred             eee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEE
Confidence            222 57875544 4443 468999999987       3333333322111   113444443333221 11         


Q ss_pred             ceeecce-------eeEEEEe--------cCCCceEEEEccCCCEEEEEec-----CCeEEEEEecCCCCCcceEeeecc
Q 014007          365 KYFSSEW-------SVAQFRL--------VEGSPYIVAFGHQKNTVVILGM-----DGSFYRCQFDPVNGGEMTQLEYNN  424 (432)
Q Consensus       365 ~~~~~~~-------~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~  424 (432)
                      .+.....       .+..+..        ....+..+.|+++|++|.++..     ++.|.|  +|..+++....++..+
T Consensus       472 v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v--~D~~t~~~~~~i~~~~  549 (567)
T 1qks_A          472 VFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV--VDDKTLELKHVIKDER  549 (567)
T ss_dssp             EEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE--EETTTTEEEEEECCTT
T ss_pred             EEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEE--EECCCceEEEEeCCCc
Confidence            0000111       1122221        1246789999999998887643     789999  5567777777777555


Q ss_pred             cCC
Q 014007          425 FLK  427 (432)
Q Consensus       425 ~~~  427 (432)
                      +..
T Consensus       550 ~~~  552 (567)
T 1qks_A          550 LVT  552 (567)
T ss_dssp             CCS
T ss_pred             ccC
Confidence            443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.75  E-value=3.4e-15  Score=132.47  Aligned_cols=233  Identities=10%  Similarity=0.051  Sum_probs=166.5

Q ss_pred             cceeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007          128 GGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA  202 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~  202 (432)
                      +......++|++++. +++++..+     +.|..||..++  ...+. +...+.++++++++.++++   ++.|.+||..
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~-----~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQ-----NRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             CCccccCCeEeCCCCEEEEEeCCC-----CEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            344567889999986 66666666     89999998877  55555 6778999999999988774   4689999997


Q ss_pred             CCeeeEEEeec----cCCcceEEEecCCCcEEEEee--cC-------------CCCcEEEEEccCCceeeeeccCCceeE
Q 014007          203 DLKLLHQIETI----ANPKGLCAVSQGVGSLVLVCP--GL-------------QKGQVRVEHYASKRTKFIMAHDSRIAC  263 (432)
Q Consensus       203 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--g~-------------~d~~i~i~d~~~~~~~~~~~~~~~i~~  263 (432)
                      +++........    ...+..++++++|+ ++++..  |.             ..+.|..++.. +....+..+......
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g  176 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG  176 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence            87654333221    12345789999886 333211  11             12456666655 555566667777899


Q ss_pred             EEEcCCCCEEEEEcCCCceEEEEECC-CCce---EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007          264 FALTQDGQLLATSSTKGTLVRIFNTL-DGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       264 ~~~sp~~~~l~~~~~dg~~i~vwd~~-~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      ++|+|+|+.|++.+.++. |++||+. +++.   ...+ . .+...+..++++++|+++++.  ++.|.+||.. ++.  
T Consensus       177 i~~s~dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~--  248 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNA-THRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE--  248 (296)
T ss_dssp             EEECTTSCEEEEETTTTE-EEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE--
T ss_pred             EEECCCCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE--
Confidence            999999999977778888 9999987 5655   3344 2 244567889999999977666  7889999986 331  


Q ss_pred             CCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEE-ccCCCEEEEEecCCeEEEEEecCCCC
Q 014007          340 RSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF-GHQKNTVVILGMDGSFYRCQFDPVNG  414 (432)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~v~iw~~~~~~~  414 (432)
                                                       +..+..+.+ +.+++| +|+++.|++++.+|   +|.+++.++
T Consensus       249 ---------------------------------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~~~  287 (296)
T 3e5z_A          249 ---------------------------------LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIETNVR  287 (296)
T ss_dssp             ---------------------------------EEEEECSSC-CCEEEEESTTSCEEEEEETTE---EEEEECSCC
T ss_pred             ---------------------------------EEEEECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEEcccc
Confidence                                             345666777 899999 58999999998874   555666544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=1.3e-16  Score=147.68  Aligned_cols=201  Identities=7%  Similarity=-0.043  Sum_probs=134.2

Q ss_pred             EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCce-EEEEEecCccEEEe---CCeEEEEEcCCCeee
Q 014007          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEV-RSVKLRRDRIIVVL---EQKIFVYNFADLKLL  207 (432)
Q Consensus       132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~  207 (432)
                      +..+.|+|++..++......  ....|.+||+.+++......+...+ ..+.|+|||+.++.   ++.|++||+.+++..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~--g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFD--GNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTT--SSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             eecCcCCCCCCEEEEEEecC--CCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence            56678999998765442210  0147999999888765444443333 34789999998863   668999999887765


Q ss_pred             EEEeeccCCcce-------------------EEEecCCCcEEEEe--ecCCCCcEEEEEccCCceeeeeccCCceeEEEE
Q 014007          208 HQIETIANPKGL-------------------CAVSQGVGSLVLVC--PGLQKGQVRVEHYASKRTKFIMAHDSRIACFAL  266 (432)
Q Consensus       208 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~--~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~  266 (432)
                      .....+......                   +.++|+++.+++..  .+..+..|.+||+.++....+..+...+..+.|
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~  195 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY  195 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence            544433221111                   24566666544321  013567899999998877777777888999999


Q ss_pred             cC-CCCEEEEEcCC------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-----CeEEEEEecC
Q 014007          267 TQ-DGQLLATSSTK------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKV  334 (432)
Q Consensus       267 sp-~~~~l~~~~~d------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~  334 (432)
                      +| +++.|+..+.+      .. |++||+..++... +..+.....+..++|+|||++|+.++.+     +.|++||+.+
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~-l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDAR-MWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET  273 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCC-CEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred             CCCCCCEEEEEecCCCCCCCce-EEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence            99 78877765543      35 8999987665432 2211112358889999999988777543     4599999987


Q ss_pred             CC
Q 014007          335 NS  336 (432)
Q Consensus       335 ~~  336 (432)
                      ++
T Consensus       274 g~  275 (396)
T 3c5m_A          274 LE  275 (396)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.72  E-value=3.1e-15  Score=149.19  Aligned_cols=280  Identities=9%  Similarity=-0.020  Sum_probs=180.5

Q ss_pred             CCCCEEEEEc-CCc---EEEEEcC--CCeeEEEe---ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007           95 QDHGCFAAGT-DHG---FRIYNCD--PFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (432)
Q Consensus        95 ~~~~~l~~~~-~~~---i~iw~~~--~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~  165 (432)
                      |+|++++... +.+   -.||..+  .++.....   .+..++...+..+.|+|++..++.+..+.......|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8888776654 222   2455543  33322111   2222344578889999999887754322000003899999999


Q ss_pred             CceeEEeecCCceEEEEEecCccEEEe---CCe----------------EEEEEcCCCeee--EEEee--ccCCcceEEE
Q 014007          166 SRCIGELSFRSEVRSVKLRRDRIIVVL---EQK----------------IFVYNFADLKLL--HQIET--IANPKGLCAV  222 (432)
Q Consensus       166 ~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~----------------i~i~d~~~~~~~--~~~~~--~~~~~~~~~~  222 (432)
                      ++.+........+..++|+|||+.++.   ++.                |++|++.+++..  ..+..  +......+.|
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~  240 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL  240 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence            987664333334778999999987773   333                999999876521  22222  2333557899


Q ss_pred             ecCCCcEEEEeecCC--CCcEEEEEccC------C--ceeeeeccCCceeEEEEcCCCCEEEEEcC----CCceEEEEEC
Q 014007          223 SQGVGSLVLVCPGLQ--KGQVRVEHYAS------K--RTKFIMAHDSRIACFALTQDGQLLATSST----KGTLVRIFNT  288 (432)
Q Consensus       223 ~~~~~~~~~~~~g~~--d~~i~i~d~~~------~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~----dg~~i~vwd~  288 (432)
                      +|+|+.+++......  +..|.+||+.+      +  ....+..+...+.. .|+|+|+.|+..+.    ++. |.+||+
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~-l~~~d~  318 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR-LINIDF  318 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE-EEEEET
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE-EEEEeC
Confidence            999998877653222  67899999986      4  46667777666655 48899988776654    236 999999


Q ss_pred             CCCc--eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe--EEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007          289 LDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT--VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (432)
Q Consensus       289 ~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (432)
                      .+++  ....+..+.....+..++|++++.++++...++.  |++||+.+++.                           
T Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~---------------------------  371 (710)
T 2xdw_A          319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL---------------------------  371 (710)
T ss_dssp             TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE---------------------------
T ss_pred             CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCE---------------------------
Confidence            8774  2344544322236888999988888888888885  45556545541                           


Q ss_pred             ceeecceeeEEEEecCCCceEEEEccCCCEEEEEe----cCCeEEEEEecC
Q 014007          365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG----MDGSFYRCQFDP  411 (432)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~v~iw~~~~  411 (432)
                              ...+..+.+.|..++++|+++.|+...    ..+.|++|++..
T Consensus       372 --------~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          372 --------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             --------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             --------EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence                    223445666788899999988766432    246788877643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.72  E-value=1.4e-15  Score=151.26  Aligned_cols=275  Identities=9%  Similarity=0.014  Sum_probs=178.2

Q ss_pred             cCCCCEEEEEc-CC---cEEEEEc--CCCeeEEEee---cccCcceeEEEEeeeCCeEEEe-----cCCCCCCCCCCeEE
Q 014007           94 NQDHGCFAAGT-DH---GFRIYNC--DPFREIFRRD---FERGGGIGVVEMLFRCNILALV-----GGGPDPQYPLNKVM  159 (432)
Q Consensus        94 s~~~~~l~~~~-~~---~i~iw~~--~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~-----s~~~d~~~~~~~v~  159 (432)
                      +|+|++++... +.   .-.||..  ..++......   +..+|...+..+.|+|++..++     +|+.+     ..|+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~-----~~i~  150 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE-----AVLH  150 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC-----CEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce-----EEEE
Confidence            37888877654 32   2345544  3333222121   1124556788999999999988     67666     8999


Q ss_pred             EEeCCCCcee-EEeecCCceEEEEEecCccEEEe---CCe-------------EEEEEcCCCe----eeEEEeeccCCcc
Q 014007          160 IWDDHQSRCI-GELSFRSEVRSVKLRRDRIIVVL---EQK-------------IFVYNFADLK----LLHQIETIANPKG  218 (432)
Q Consensus       160 iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~---d~~-------------i~i~d~~~~~----~~~~~~~~~~~~~  218 (432)
                      +||+.+++.+ ...........++|+|||+.++.   +..             |++|++.++.    ++.....+...+.
T Consensus       151 v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~  230 (695)
T 2bkl_A          151 VIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL  230 (695)
T ss_dssp             EEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred             EEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence            9999998865 21111122268999999987773   443             9999998765    2222222334566


Q ss_pred             eEEEecCCCcEEEEeecC-CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc---CCCceEEEEECCCCce-
Q 014007          219 LCAVSQGVGSLVLVCPGL-QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTL-  293 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~-~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---~dg~~i~vwd~~~~~~-  293 (432)
                      .+.++|+|+.+++..... ....|.+++..++....+..+...+....+ ++|.+++...   .++. |.+||+.+++. 
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~~~~~~  308 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPAKPARA  308 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTTBCSGG
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCCCCCcc
Confidence            889999999887665221 123677776666667777777777777777 5666444443   2467 99999987753 


Q ss_pred             -EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC-CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007          294 -LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV-NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW  371 (432)
Q Consensus       294 -~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (432)
                       ...+..+.....+..++|+ ++.++++...|+..+||.+.. ++.                                  
T Consensus       309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~----------------------------------  353 (695)
T 2bkl_A          309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP----------------------------------  353 (695)
T ss_dssp             GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE----------------------------------
T ss_pred             CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe----------------------------------
Confidence             2344433224568889998 778888888999988887762 221                                  


Q ss_pred             eeEEEEec-CCCceEEEEccCCCEEEEEe----cCCeEEEEEecC
Q 014007          372 SVAQFRLV-EGSPYIVAFGHQKNTVVILG----MDGSFYRCQFDP  411 (432)
Q Consensus       372 ~~~~~~~~-~~~v~~~~~s~~~~~l~~~~----~dg~v~iw~~~~  411 (432)
                       ...+..+ .+.|..++++|+++.|+...    ..+.|++|+++.
T Consensus       354 -~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          354 -VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             -EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             -eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence             1122333 45577788999998777333    357888887743

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.71  E-value=1.3e-14  Score=126.80  Aligned_cols=185  Identities=20%  Similarity=0.181  Sum_probs=144.7

Q ss_pred             CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cC-CceEEEEEecCccEEEe-CCeEEEEEcCCCeeeEEEeecc-C
Q 014007          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR-SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIA-N  215 (432)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~-~~v~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~-~  215 (432)
                      .+..+++++.+     +.|++||.++|+.+.++. +. ..+.++.++|+|+++++ ++.|+.||. +++.+..+.... .
T Consensus         4 ~~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~~   77 (276)
T 3no2_A            4 PQHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAGC   77 (276)
T ss_dssp             CCEEEEECTTC-----SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred             CCcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCCc
Confidence            35667777777     999999998999999998 33 47899999999998885 778999998 899988887642 3


Q ss_pred             CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~  289 (432)
                      .+..+.+.++|+.++..+ + .++.|..+|.+.+.+..+.      .+......+++.++|++|++...++. |..||..
T Consensus        78 ~~~~~~~~~dG~~lv~~~-~-~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v~~~d~~  154 (276)
T 3no2_A           78 EMQTARILPDGNALVAWC-G-HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-VREIAPN  154 (276)
T ss_dssp             EEEEEEECTTSCEEEEEE-S-TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-EEEECTT
T ss_pred             cccccEECCCCCEEEEec-C-CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-EEEECCC
Confidence            566788889987554322 2 2667777776555554443      12234556778999999999999999 9999987


Q ss_pred             CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       290 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                       |+.+.++...   ..+.++.+.++|+.++++..+++|..+|..+++.
T Consensus       155 -G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          155 -GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             -SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             -CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence             9999999853   4566788889999999988888999999998874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=4.4e-13  Score=118.74  Aligned_cols=269  Identities=9%  Similarity=-0.000  Sum_probs=184.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      +...+.+++++++|+++++.. +++|.+|+.+ ++.. ...+. .....+..+++++++.+.++...+     +.|..||
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~   84 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLP-TPDAKVMCLTISSDGEVWFTENAA-----NKIGRIT   84 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECS-STTCCEEEEEECTTSCEEEEETTT-----TEEEEEC
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCC-cccCceeeEEECCCCCEEEeCCCC-----CeEEEEC
Confidence            456899999999999877766 4569999977 4332 12222 244678889999988887776655     8899999


Q ss_pred             CCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEE-eeccCCcceEEEecCCCcEEEEeec
Q 014007          163 DHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       163 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      .. ++. ..+.   ....+.++++.+++.+.++   ++.|.+||. +++..... .........+++.+++. ++++.  
T Consensus        85 ~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~--  158 (299)
T 2z2n_A           85 KK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTE--  158 (299)
T ss_dssp             TT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEE--
T ss_pred             CC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEe--
Confidence            75 432 3332   3457899999999887764   568999998 55443221 12234456788888874 44433  


Q ss_pred             CCCCcEEEEEccCCceeee--eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007          236 LQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       236 ~~d~~i~i~d~~~~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~  313 (432)
                      ..++.|..||. ++....+  ..+...+.+++++++|+++++...++. |.+||. +++.. .+........+.++++++
T Consensus       159 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~  234 (299)
T 2z2n_A          159 NQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEIT-EFKIPTPNARPHAITAGA  234 (299)
T ss_dssp             TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEE-EEECSSTTCCEEEEEECS
T ss_pred             CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcEE-EEECCCCCCCceeEEECC
Confidence            34688999998 5544443  234556889999999998777777788 999998 77644 343322346789999999


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE--ecCCCceEEEEccC
Q 014007          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR--LVEGSPYIVAFGHQ  391 (432)
Q Consensus       314 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~  391 (432)
                      +|+++++...++.|.+||. +++                                    +..+.  .+...+.++++ ++
T Consensus       235 ~g~l~v~~~~~~~i~~~d~-~g~------------------------------------~~~~~~~~~~~~~~~i~~-~~  276 (299)
T 2z2n_A          235 GIDLWFTEWGANKIGRLTS-NNI------------------------------------IEEYPIQIKSAEPHGICF-DG  276 (299)
T ss_dssp             TTCEEEEETTTTEEEEEET-TTE------------------------------------EEEEECSSSSCCEEEEEE-CS
T ss_pred             CCCEEEeccCCceEEEECC-CCc------------------------------------eEEEeCCCCCCccceEEe-cC
Confidence            9997776667889999998 332                                    11111  22346888999 88


Q ss_pred             CCEEEEEecCCeEEEEEe
Q 014007          392 KNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       392 ~~~l~~~~~dg~v~iw~~  409 (432)
                      |++.++.. .+.+..++.
T Consensus       277 g~l~v~~~-~~~l~~~~~  293 (299)
T 2z2n_A          277 ETIWFAME-CDKIGKLTL  293 (299)
T ss_dssp             SCEEEEET-TTEEEEEEE
T ss_pred             CCEEEEec-CCcEEEEEc
Confidence            87666554 566666554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.71  E-value=3.5e-15  Score=148.90  Aligned_cols=248  Identities=10%  Similarity=0.031  Sum_probs=173.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-C-----cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC---
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGTD-H-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ---  152 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~~-~-----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~---  152 (432)
                      .+|...+..++|||||++||.+.+ +     .|++||+++++.... .+   ....+..+.|+||+..|+.+..+..   
T Consensus       121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~  196 (710)
T 2xdw_A          121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL---ERVKFSCMAWTHDGKGMFYNAYPQQDGK  196 (710)
T ss_dssp             TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE---EEECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cc---cCcccceEEEEeCCCEEEEEEECCcccc
Confidence            345557889999999999987652 2     499999998876532 22   2223567889999877766554411   


Q ss_pred             --------CCCCeEEEEeCCCCcee--EEee---cCCceEEEEEecCccEEEe--------CCeEEEEEcCC------Ce
Q 014007          153 --------YPLNKVMIWDDHQSRCI--GELS---FRSEVRSVKLRRDRIIVVL--------EQKIFVYNFAD------LK  205 (432)
Q Consensus       153 --------~~~~~v~iwd~~~~~~~--~~~~---~~~~v~~~~~~~~~~~~~~--------d~~i~i~d~~~------~~  205 (432)
                              .....|++|++.+++..  ..+.   +...+..+.|+|||++++.        +..|++||+.+      +.
T Consensus       197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  276 (710)
T 2xdw_A          197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI  276 (710)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred             ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence                    00134999999887632  2223   3455789999999998872        35899999976      43


Q ss_pred             -eeEEEeeccCCcceEEEecCCCcEEEEeecC-CCCcEEEEEccCCc---eeeeeccCC--ceeEEEEcCCCCEEEEEcC
Q 014007          206 -LLHQIETIANPKGLCAVSQGVGSLVLVCPGL-QKGQVRVEHYASKR---TKFIMAHDS--RIACFALTQDGQLLATSST  278 (432)
Q Consensus       206 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~i~i~d~~~~~---~~~~~~~~~--~i~~~~~sp~~~~l~~~~~  278 (432)
                       ....+..+...+. ..++++|+.+++.+... .++.|.+||+.+..   ...+..|..  .+..++|++++.++++...
T Consensus       277 ~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~  355 (710)
T 2xdw_A          277 LKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH  355 (710)
T ss_dssp             CCCEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred             cceEEeeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence             3555655555543 35889999888765221 24579999998753   355555544  6888999988888888888


Q ss_pred             CCc-eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe----CCCeEEEEEecCCC
Q 014007          279 KGT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS----DKGTVHVFNLKVNS  336 (432)
Q Consensus       279 dg~-~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~  336 (432)
                      ++. .|++||+.+++.+..+..  +...+..+.++|++..|+...    ..++|++||+.+++
T Consensus       356 ~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          356 DVKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEEEEEEEECCCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            874 167778878887777764  357789999999997666332    45789999998776

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.68  E-value=6.4e-14  Score=124.25  Aligned_cols=234  Identities=8%  Similarity=-0.044  Sum_probs=165.8

Q ss_pred             cCCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           80 TSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      ....+.....+++|+|+|+ +++++. +++|..|+.++.  .  ..+. .+...+..+++++++.++++...+     +.
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~--~~~~-~~~~~~~~l~~~~dg~l~v~~~~~-----~~   91 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L--SPEM-HPSHHQNGHCLNKQGHLIACSHGL-----RR   91 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E--EEEE-SSCSSEEEEEECTTCCEEEEETTT-----TE
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e--EEEE-CCCCCcceeeECCCCcEEEEecCC-----Ce
Confidence            3344566788999999998 666776 555999998766  2  2232 355668899999999888887766     89


Q ss_pred             EEEEeCCCCceeEEee-----cCCceEEEEEecCccEEEeC--------------------CeEEEEEcCCCeeeEEEee
Q 014007          158 VMIWDDHQSRCIGELS-----FRSEVRSVKLRRDRIIVVLE--------------------QKIFVYNFADLKLLHQIET  212 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~d--------------------~~i~i~d~~~~~~~~~~~~  212 (432)
                      |.+||..+++......     ....+..++++++|.++++|                    +.|..++.. ++. ..+..
T Consensus        92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~  169 (296)
T 3e5z_A           92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIR  169 (296)
T ss_dssp             EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEEC
T ss_pred             EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeec
Confidence            9999988887544332     12356789999999988852                    356666654 443 33434


Q ss_pred             ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc-CCce----eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRT----KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd  287 (432)
                      .......++|+|+++.+ ++  ...++.|.+|++. .+.+    ..+..+...+.+++++++|+++++.  ++. |.+||
T Consensus       170 ~~~~~~gi~~s~dg~~l-v~--~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~  243 (296)
T 3e5z_A          170 DRVKPNGLAFLPSGNLL-VS--DTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLT  243 (296)
T ss_dssp             CCSSEEEEEECTTSCEE-EE--ETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEEC
T ss_pred             CCCCCccEEECCCCCEE-EE--eCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEEC
Confidence            44455689999999866 43  3467899999986 3333    2223345567889999999877666  677 99999


Q ss_pred             CCCCceEEEEEeCCCcCceEEEEE-CCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          288 TLDGTLLQEVRRGADRAEIYSLAF-SSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      .. ++.+..+..+  .. +.+++| +|+++.|++++.+ .+.-++..+.+
T Consensus       244 ~~-g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~  288 (296)
T 3e5z_A          244 PD-GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG  288 (296)
T ss_dssp             TT-SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred             CC-CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence            75 8888888753  34 899999 6899989888865 45555666554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=1.6e-14  Score=131.11  Aligned_cols=226  Identities=13%  Similarity=0.076  Sum_probs=149.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcC----Cc--EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCC-C------
Q 014007           86 PTLLHISFNQDHGCFAAGTD----HG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP-Q------  152 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~~----~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~-~------  152 (432)
                      ..+..++|+|||+.|+...+    +.  |.+|++++++......    ... +..+.|+|++..++....+. .      
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~----~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE----AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE----ESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc----CCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence            46788999999999887762    22  7778887766542222    223 88899999987666553210 0      


Q ss_pred             ---------------CCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---C------C-eEEEEEcCCCeee
Q 014007          153 ---------------YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---E------Q-KIFVYNFADLKLL  207 (432)
Q Consensus       153 ---------------~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d------~-~i~i~d~~~~~~~  207 (432)
                                     -....|++||+.+++.+..+... .+..+.|+||| ++++   +      . ...+|.+.+++. 
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-  210 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-  210 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-
Confidence                           00157999999888764445433 88899999999 5552   2      2 334444435543 


Q ss_pred             EEEeeccCCcceEEEecCCCcEEEEeecC-----CCCcEEEEEccCCceee-eeccCCceeE-EEEcCCCCEEEEEcCCC
Q 014007          208 HQIETIANPKGLCAVSQGVGSLVLVCPGL-----QKGQVRVEHYASKRTKF-IMAHDSRIAC-FALTQDGQLLATSSTKG  280 (432)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~~~~~~~-~~~~~~~i~~-~~~sp~~~~l~~~~~dg  280 (432)
                      ..+..+ ..+  ..++|+|+.++++....     ....|.+||  ++.... ...+...+.. +.|+ ++ ++++++.++
T Consensus       211 ~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          211 EKMFEK-VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             EEEEEE-ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             EEeccC-cce--eeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            334333 333  34499999877664221     135788888  444333 3456777886 9999 88 889999999


Q ss_pred             ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeE-EEEEec
Q 014007          281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV-HVFNLK  333 (432)
Q Consensus       281 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i-~iwd~~  333 (432)
                      . ++|| +.+++....+.   +...|.+++|+|  .++++++.++.. .||.+.
T Consensus       284 ~-~~l~-~~~g~~~~~~~---~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          284 S-VNLY-IWDGEIKPIAK---GRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             E-EEEE-EESSSEEEEEC---SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             c-EEEE-EcCCceEEEec---CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            8 9999 87666543333   357899999999  677777766654 777775

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.66  E-value=3.6e-15  Score=148.32  Aligned_cols=246  Identities=9%  Similarity=-0.050  Sum_probs=163.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-----C-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC---
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGT-----D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ---  152 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~-----~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~---  152 (432)
                      .+|...+.+++|||||++||.+.     + ..|++||+++++......+.   ......+.|++++..|+.+..+..   
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~---~~~~~~~~wspDg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE---GGKYATPKWTPDSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS---CCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC---cccccceEEecCCCEEEEEEecCCCCC
Confidence            34566799999999999998543     2 23999999887643111221   111257889999988777665510   


Q ss_pred             -----CCCCeEEEEeCCCCce--eEEee---cCCceEEEEEecCccEEEe---CC----eEEEEEcCCCeeeEEEeeccC
Q 014007          153 -----YPLNKVMIWDDHQSRC--IGELS---FRSEVRSVKLRRDRIIVVL---EQ----KIFVYNFADLKLLHQIETIAN  215 (432)
Q Consensus       153 -----~~~~~v~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~~~---d~----~i~i~d~~~~~~~~~~~~~~~  215 (432)
                           .....|++|++.++..  ...+.   +...+..+.|+|||++++.   ++    .|++|+..+++ ...+..+..
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~  272 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVG  272 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSS
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCC
Confidence                 0013499999988763  22232   3467889999999988773   44    67777765554 344444444


Q ss_pred             CcceEEEecCCCcEEEEeec-CCCCcEEEEEccCCce---eeeecc--CCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007          216 PKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASKRT---KFIMAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~~~---~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~  289 (432)
                      ......+ ++++ +++.+.. ..++.|.+||+.+...   ..+..+  ...+..++|+ ++.++++...|+. .+||.+.
T Consensus       273 ~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~  348 (695)
T 2bkl_A          273 AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVAT  348 (695)
T ss_dssp             CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEE
T ss_pred             ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEe
Confidence            4444444 6777 6655421 1368899999977542   444443  4568888988 7778888888987 7777554


Q ss_pred             -CCceEEEEEeCCCcCceEEEEECCCCCEEEEEe----CCCeEEEEEecCCC
Q 014007          290 -DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS----DKGTVHVFNLKVNS  336 (432)
Q Consensus       290 -~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~  336 (432)
                       +++.+..+..+ ....+..++++|+++.|+...    ..++|++||+.+++
T Consensus       349 ~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          349 LKGKPVRTVQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             TTCCEEEECCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CCCCeeEEecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence             46666555432 246788889999998776332    45789999998765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.65  E-value=8e-14  Score=125.42  Aligned_cols=234  Identities=9%  Similarity=0.036  Sum_probs=164.3

Q ss_pred             CCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      .....+.+.. ++++++.. ++.|.+||..+++..  ..+.  .......+++++++.++++...+     +.|.+||..
T Consensus        44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~--~~i~--~~~~p~~i~~~~~g~lyv~~~~~-----~~v~~iD~~  113 (328)
T 3dsm_A           44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEV--GRIT--GFTSPRYIHFLSDEKAYVTQIWD-----YRIFIINPK  113 (328)
T ss_dssp             SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEE--EEEE--CCSSEEEEEEEETTEEEEEEBSC-----SEEEEEETT
T ss_pred             ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEE--EEcC--CCCCCcEEEEeCCCeEEEEECCC-----CeEEEEECC
Confidence            4567777753 44444444 456999999988765  3343  34566788887777777766455     899999999


Q ss_pred             CCceeEEeecCC------ceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          165 QSRCIGELSFRS------EVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       165 ~~~~~~~~~~~~------~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      +++.+..+....      ....+++ .++.++++    ++.|.++|+.+++.+..+..... ...++++++|+ +++++.
T Consensus       114 t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~-l~v~~~  190 (328)
T 3dsm_A          114 TYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNK-MWTITD  190 (328)
T ss_dssp             TTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSE-EEEEBC
T ss_pred             CCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCC-EEEEEC
Confidence            999888877444      6677888 44444442    67899999999998888865443 35788999886 555543


Q ss_pred             cCC--------CCcEEEEEccCCcee-eeecc-CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC
Q 014007          235 GLQ--------KGQVRVEHYASKRTK-FIMAH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (432)
Q Consensus       235 g~~--------d~~i~i~d~~~~~~~-~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~  304 (432)
                      +..        .+.|.++|..+..+. .+... ......++|+|++++|+++..  . |.+||..+++............
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~~~~~~~~~~  267 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPVRPFLEFRDT  267 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCSSCSBCCCSS
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceeeeeeecCCCC
Confidence            321        278999999876654 33322 346899999999999888765  7 9999998887632111000135


Q ss_pred             ceEEEEECC-CCCEEEEE----eCCCeEEEEEecCCC
Q 014007          305 EIYSLAFSS-NAQWLAVS----SDKGTVHVFNLKVNS  336 (432)
Q Consensus       305 ~i~~~~~s~-~~~~l~~~----~~dg~i~iwd~~~~~  336 (432)
                      ....++++| ++.++++.    ..++.|.+||.. ++
T Consensus       268 ~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          268 KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            688999999 55666665    578999999998 65

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=8.1e-14  Score=121.70  Aligned_cols=235  Identities=9%  Similarity=-0.039  Sum_probs=161.5

Q ss_pred             CeEEEEEcCCCCEEE-EEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007           87 TLLHISFNQDHGCFA-AGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~-~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      ...+++++++|++++ +.. +++|.+|+..+....   .+...+...+..+++++++.++++.. +     +.|.+||..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~p~~i~~~~~g~l~v~~~-~-----~~i~~~d~~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---VLPFNGLYQPQGLAVDGAGTVYVTDF-N-----NRVVTLAAG   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---ECCCCSCCSCCCEEECTTCCEEEEET-T-----TEEEEECTT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---eEeeCCcCCcceeEECCCCCEEEEcC-C-----CEEEEEeCC
Confidence            778999999999776 434 455999986544322   11112334567788888887776665 5     899999976


Q ss_pred             CCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007          165 QSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (432)
Q Consensus       165 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (432)
                      .... ..+.  ....+.++++.+++.+.++   ++.|.+|+..+................++++++++ ++++.  ..++
T Consensus        96 ~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~--~~~~  171 (270)
T 1rwi_B           96 SNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTD--TDNN  171 (270)
T ss_dssp             CSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEE--GGGT
T ss_pred             CceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEE--CCCC
Confidence            5543 3333  3367899999999887664   57899998655433222222223456789999886 55543  2468


Q ss_pred             cEEEEEccCCceeee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE
Q 014007          240 QVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (432)
Q Consensus       240 ~i~i~d~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  318 (432)
                      .|.+||......... ..+...+.+++++++|.++++...++. |.+||........ +.. .+...+.+++++++|+++
T Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          172 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEE
T ss_pred             EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEE
Confidence            899999887654433 233367899999999988777777888 9999986554332 221 122568999999999988


Q ss_pred             EEEeCCCeEEEEEecCCCC
Q 014007          319 AVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       319 ~~~~~dg~i~iwd~~~~~~  337 (432)
                      ++...+++|++|++...+.
T Consensus       249 v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          249 VADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEEGGGTEEEEECCCGGGS
T ss_pred             EEECCCCEEEEEcCCCccc
Confidence            8888999999999987653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.64  E-value=7.5e-12  Score=110.78  Aligned_cols=231  Identities=9%  Similarity=-0.022  Sum_probs=161.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      ....+.++++.++|+++++.. +++|.+|+.+ ++... ..+. .....+..+++.+++.+.++...+     +.|..||
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~v~~~d   89 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP-TPDAKVMCLIVSSLGDIWFTENGA-----NKIGKLS   89 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS-STTCCEEEEEECTTSCEEEEETTT-----TEEEEEC
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC-CCCCcceeEEECCCCCEEEEecCC-----CeEEEEC
Confidence            346789999999999877775 5569999977 43322 2232 234678889999988877776655     8899999


Q ss_pred             CCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEE-EeeccCCcceEEEecCCCcEEEEeec
Q 014007          163 DHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       163 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      .. ++.. .+.   ....+.++++.+++.+.++   ++.|..+|.. ++.... +.........+++.++++ ++++.  
T Consensus        90 ~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~--  163 (300)
T 2qc5_A           90 KK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTE--  163 (300)
T ss_dssp             TT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEE--
T ss_pred             CC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEe--
Confidence            77 5543 333   3467899999998887664   5689999986 554422 221234456788888876 55543  


Q ss_pred             CCCCcEEEEEccCCceeeee--ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007          236 LQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       236 ~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~  313 (432)
                      ..++.|..+|. .+....+.  .+...+..++++++|+++++....+. |.+||. +++... +........+.++++++
T Consensus       164 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~  239 (300)
T 2qc5_A          164 NQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISE-YDIPTPNARPHAITAGK  239 (300)
T ss_dssp             TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECS
T ss_pred             cCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEE-EECCCCCCCceEEEECC
Confidence            34678999988 43333332  34456899999999988777777778 999997 565443 32222335689999999


Q ss_pred             CCCEEEEEeCCCeEEEEEe
Q 014007          314 NAQWLAVSSDKGTVHVFNL  332 (432)
Q Consensus       314 ~~~~l~~~~~dg~i~iwd~  332 (432)
                      +|+++++...++.|..||.
T Consensus       240 ~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          240 NSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             TTCEEEEETTTTEEEEECT
T ss_pred             CCCEEEeccCCCeEEEECC
Confidence            9997777666789999998

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.63  E-value=9.5e-14  Score=121.24  Aligned_cols=235  Identities=9%  Similarity=-0.025  Sum_probs=159.6

Q ss_pred             eEEEEeeeCCeEEEe-cCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe--CCeEEEEEcCCCee
Q 014007          131 GVVEMLFRCNILALV-GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKL  206 (432)
Q Consensus       131 ~v~~~~~~~~~~~~~-s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~  206 (432)
                      ....+++++++.+++ +...+     +.|.+||..++....... ....+.++++++++.++++  ++.|.+||......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSS-----CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCC-----CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE
Confidence            667888988888777 65555     899999976544322111 3356889999999886664  57899999765443


Q ss_pred             eEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee-eccCCceeEEEEcCCCCEEEEEcCCCceEE
Q 014007          207 LHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (432)
Q Consensus       207 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~  284 (432)
                       ..+. ........++++++++ ++++.  ..++.|.+|+..+...... ......+.+++++++|+++++...++. |.
T Consensus       100 -~~~~~~~~~~p~~i~~~~~g~-l~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~  174 (270)
T 1rwi_B          100 -TVLPFDGLNYPEGLAVDTQGA-VYVAD--RGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VV  174 (270)
T ss_dssp             -EECCCCSCSSEEEEEECTTCC-EEEEE--GGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EE
T ss_pred             -eeeecCCcCCCcceEECCCCC-EEEEE--CCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EE
Confidence             2222 2224556788998875 55443  2467899997655433222 223346789999999998777777788 99


Q ss_pred             EEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (432)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (432)
                      +||............  ....+..++++++|.++++...++.|.+||........                         
T Consensus       175 ~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-------------------------  227 (270)
T 1rwi_B          175 KLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-------------------------  227 (270)
T ss_dssp             EECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-------------------------
T ss_pred             EEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-------------------------
Confidence            999877654432221  22568999999999877777778899999986543110                         


Q ss_pred             ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                                ....+...+..++++++|+.+++...++.|++|+++..
T Consensus       228 ----------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          228 ----------LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             ----------CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             ----------eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence                      00011235788999999998888888999999887553

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.63  E-value=3.7e-12  Score=116.25  Aligned_cols=270  Identities=8%  Similarity=-0.032  Sum_probs=177.2

Q ss_pred             EcCCCCEEEEEcC--C----cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC----------CCCCCCCC
Q 014007           93 FNQDHGCFAAGTD--H----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLN  156 (432)
Q Consensus        93 ~s~~~~~l~~~~~--~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~~  156 (432)
                      ..|+++++.+...  .    .|.+||..+++..  ..+. ... .- .+.++|++..++.+.          .+     +
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~--~~i~-~g~-~p-~i~~spDg~~lyv~n~~~~~~~rg~~~-----~   97 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL--GHVN-GGF-LP-NPVAAHSGSEFALASTSFSRIAKGKRT-----D   97 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEE--EEec-CCC-CC-CeEECCCCCEEEEEeccccccccCCCC-----C
Confidence            3466666555431  2    6799998887755  4454 122 23 889999987776654          24     7


Q ss_pred             eEEEEeCCCCceeEEeecC--------CceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEE-EeeccCCcceEEE
Q 014007          157 KVMIWDDHQSRCIGELSFR--------SEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQ-IETIANPKGLCAV  222 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~  222 (432)
                      .|.+||..+.+.+.++...        .....+.++|||++++.     ++.|.++| .+++.+.. +...    .++.+
T Consensus        98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----~~~~~  172 (373)
T 2mad_H           98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----TCYHI  172 (373)
T ss_pred             eEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----ceEEE
Confidence            8999999998888877632        34568999999998873     36799999 99988777 5432    13566


Q ss_pred             ecCCCcEEEEeecCCCCcEEEEEccCCcee-eee-----ccCCc-eeEEEEcCCCCEEEEEcCCCceEEEEECCCCc--e
Q 014007          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIM-----AHDSR-IACFALTQDGQLLATSSTKGTLVRIFNTLDGT--L  293 (432)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~-----~~~~~-i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~--~  293 (432)
                      .++++..+++.  ..||.+.++|. .+... ...     ....+ .....+.+++..++..+..+. |.+.|+....  .
T Consensus       173 ~~~~~~~~~~~--~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-v~vid~~~~~~~v  248 (373)
T 2mad_H          173 HPGAPSTFYLL--CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK-ILQADISAAGATN  248 (373)
T ss_pred             EeCCCceEEEE--cCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce-EEEEeccCCcceE
Confidence            78877766654  36899999999 64433 111     11112 123456666655555556778 9999987653  2


Q ss_pred             EEEEEeCC--------CcCceEEEEECCCCCEEEEEeC----------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 014007          294 LQEVRRGA--------DRAEIYSLAFSSNAQWLAVSSD----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSS  355 (432)
Q Consensus       294 ~~~~~~~~--------~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  355 (432)
                      +..+....        .......+.++||++.|+++..          .+.|.++|+.+.+.+                 
T Consensus       249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv-----------------  311 (373)
T 2mad_H          249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS-----------------  311 (373)
T ss_pred             eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE-----------------
Confidence            23332100        1133455889999988877653          357999999887632                 


Q ss_pred             ceeEeecccceeecceeeEEEEecCCCceEEEEccCCC-EEEEEe-cCCeEEEEEecCCCCCcceE
Q 014007          356 LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILG-MDGSFYRCQFDPVNGGEMTQ  419 (432)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~  419 (432)
                                        .++... +....++|+|||+ +++++. .++.|.+|+.  .+++.+.+
T Consensus       312 ------------------~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~--~t~~vv~~  356 (373)
T 2mad_H          312 ------------------SQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDA--GAGDQDQS  356 (373)
T ss_pred             ------------------EEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEEC--CCCCEEee
Confidence                              233222 2478999999999 788877 4899999775  45555544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.63  E-value=1.7e-12  Score=117.06  Aligned_cols=234  Identities=9%  Similarity=0.000  Sum_probs=159.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      ..+...+.+++|+++|++++++. +++|.+|+.++++....  .. .+...+..+++++++.++++...+. ...+.|.+
T Consensus        41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~--~~-~~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~  116 (333)
T 2dg1_A           41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--FV-SHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFA  116 (333)
T ss_dssp             ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--EE-CSSSSEEEEEECTTSCEEEEECTTS-SSCCEEEE
T ss_pred             eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE--ee-CCCCCcceEEECCCCcEEEEeCCCC-CCCceEEE
Confidence            34556789999999999887777 45599999877664422  11 2456788999999987776654210 00147999


Q ss_pred             EeCCCCceeEEee---cCCceEEEEEecCccEEEeC---------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          161 WDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       161 wd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      ||..+++....+.   ....+.++++++++.+++.+         +.|..+|..+++... +.........++++++++.
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKV  195 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSE
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCE
Confidence            9988776543332   34578999999999877742         356666655444332 3223344567899999987


Q ss_pred             EEEEeecCCCCcEEEEEccC--Cceeee-----ecc--CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007          229 LVLVCPGLQKGQVRVEHYAS--KRTKFI-----MAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~--~~~~~~-----~~~--~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~  299 (432)
                      ++++.  ..++.|.+||++.  .....+     ...  ...+..++++++|+++++...++. |.+||. +++.+..+..
T Consensus       196 l~v~~--~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~-~g~~~~~~~~  271 (333)
T 2dg1_A          196 LWVTE--TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQILI  271 (333)
T ss_dssp             EEEEE--GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEEC
T ss_pred             EEEEe--CCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCE-EEEECC-CCCEEEEEEc
Confidence            76653  3468999999953  222211     111  146788999999998888777888 999997 6777777764


Q ss_pred             CCC----cCceEEEEECCCCCEEEEEeCC
Q 014007          300 GAD----RAEIYSLAFSSNAQWLAVSSDK  324 (432)
Q Consensus       300 ~~~----~~~i~~~~~s~~~~~l~~~~~d  324 (432)
                      ...    ...+.+++|+||++.|+.++.+
T Consensus       272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          272 PGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             TTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCCccccccCcceEEECCCCCEEEEEeCc
Confidence            311    1158999999998777766554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.60  E-value=1.8e-13  Score=137.06  Aligned_cols=278  Identities=8%  Similarity=-0.026  Sum_probs=173.4

Q ss_pred             cCCCCEEEEEc-CCc---EEEEEcC-----CCeeEEEe---ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007           94 NQDHGCFAAGT-DHG---FRIYNCD-----PFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        94 s~~~~~l~~~~-~~~---i~iw~~~-----~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw  161 (432)
                      +|+|++++... +.+   -.||..+     .++.....   .+..++...+..+.|+||+..++.+..+.......|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            38999877654 322   4556543     22222111   122233456788999999987765432100001369999


Q ss_pred             eCCCCceeEEeecCCceEEEEEecCccEEEe---CC--------------eEEEEEcCCCee--eEEEeecc--CCcceE
Q 014007          162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQ--------------KIFVYNFADLKL--LHQIETIA--NPKGLC  220 (432)
Q Consensus       162 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~--------------~i~i~d~~~~~~--~~~~~~~~--~~~~~~  220 (432)
                      |+.+++.+........+..++|+|| +.++.   ++              .|++|++.++..  ...+....  ..+..+
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            9999987654323333467899999 76662   32              389999877642  22222222  235678


Q ss_pred             EEecCCCcEEEEeecC--CCCcEEEEEccCC--c-eeeeeccCCceeEEEEcCCCCEEEEEcC----CCceEEEEECCCC
Q 014007          221 AVSQGVGSLVLVCPGL--QKGQVRVEHYASK--R-TKFIMAHDSRIACFALTQDGQLLATSST----KGTLVRIFNTLDG  291 (432)
Q Consensus       221 ~~~~~~~~~~~~~~g~--~d~~i~i~d~~~~--~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~----dg~~i~vwd~~~~  291 (432)
                      .|+|||+.+++.....  ....|++||+.++  . ...+..+...+.... +|+|+.|+..+.    ++. |.+||+.++
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~-l~~~d~~~~  351 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK-IVRVDLSGS  351 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE-EEEEECSSS
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE-EEEEeCCCC
Confidence            9999999887765322  2458999999876  5 666666666665554 488988887765    456 999998875


Q ss_pred             -ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC-CCCCCCCCCCCCCCCCCCCCCceeEeecccceeec
Q 014007          292 -TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV-NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSS  369 (432)
Q Consensus       292 -~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (432)
                       .....+..+ +...+..++|+ ++.++++...|+..+||.+.. ++.                                
T Consensus       352 ~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~--------------------------------  397 (741)
T 1yr2_A          352 TPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP--------------------------------  397 (741)
T ss_dssp             SCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE--------------------------------
T ss_pred             ccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc--------------------------------
Confidence             233444433 34557778887 667788888999888887652 221                                


Q ss_pred             ceeeEEEEec-CCCceEEEEccCCCEEEEE----ecCCeEEEEEecC
Q 014007          370 EWSVAQFRLV-EGSPYIVAFGHQKNTVVIL----GMDGSFYRCQFDP  411 (432)
Q Consensus       370 ~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~----~~dg~v~iw~~~~  411 (432)
                         ...+..+ .+.|..++++|+++.|+..    ...+.|++|++..
T Consensus       398 ---~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          398 ---AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             ---EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             ---eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence               1122232 4567889999998876633    3357888887643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.59  E-value=5.2e-12  Score=111.91  Aligned_cols=227  Identities=13%  Similarity=0.104  Sum_probs=153.8

Q ss_pred             eEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeE
Q 014007          131 GVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLH  208 (432)
Q Consensus       131 ~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~  208 (432)
                      ..-...|++ ++.++++...+     +.|+.||..+++. ..+.....+.++++++++.+++ .++.|.+||..+++...
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPA-----KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVV   87 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTT-----TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEE
T ss_pred             cccCCeEECCCCEEEEEECCC-----CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEE
Confidence            344677777 35555555555     8999999887664 4555678899999999998766 47889999998876543


Q ss_pred             EEeec----cCCcceEEEecCCCcEEEEeecCC-------CCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEE-E
Q 014007          209 QIETI----ANPKGLCAVSQGVGSLVLVCPGLQ-------KGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLA-T  275 (432)
Q Consensus       209 ~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~-------d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~-~  275 (432)
                      .....    ......++++++|+ +++...+..       ...-.+|.++. +....+..+......++|+|+++.|+ +
T Consensus        88 ~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~  166 (297)
T 3g4e_A           88 LATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYI  166 (297)
T ss_dssp             EEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred             EEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEe
Confidence            33221    12345688999987 555442211       12334554443 33444444455678999999998764 5


Q ss_pred             EcCCCceEEEEEC--CCCceE--EEEEe-CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCC
Q 014007          276 SSTKGTLVRIFNT--LDGTLL--QEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT  350 (432)
Q Consensus       276 ~~~dg~~i~vwd~--~~~~~~--~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  350 (432)
                      .+.++. |.+||+  .++...  ..+.. ......+..++++++|++.++....+.|.+||..+++.             
T Consensus       167 ~~~~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~-------------  232 (297)
T 3g4e_A          167 DSLSYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR-------------  232 (297)
T ss_dssp             EGGGTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE-------------
T ss_pred             cCCCCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE-------------
Confidence            556777 999997  466542  22221 11235678999999999888877888999999987762             


Q ss_pred             CCCCCceeEeecccceeecceeeEEEEecCCCceEEEEc-cCCCEEEEEec
Q 014007          351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG-HQKNTVVILGM  400 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~  400 (432)
                                            +..+..+...+++++|. ||++.|++++.
T Consensus       233 ----------------------~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          233 ----------------------LQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             ----------------------EEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             ----------------------EEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence                                  33455666679999998 89888776654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.59  E-value=6.6e-13  Score=119.68  Aligned_cols=274  Identities=11%  Similarity=0.121  Sum_probs=177.6

Q ss_pred             EEcCCCCEEEEEcC------CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC----------CCCCCCC
Q 014007           92 SFNQDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPL  155 (432)
Q Consensus        92 ~~s~~~~~l~~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~  155 (432)
                      ...|+++.+.+...      +.|.++|..+++..  ..+..+.. .  .+.++|++..++.++          .+     
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~--~~I~vG~~-P--~va~spDG~~lyVan~~~~r~~~G~~~-----  108 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI--GMIDGGFL-P--NPVVADDGSFIAHASTVFSRIARGERT-----  108 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE--EEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEE-----
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE--EEEECCCC-C--cEEECCCCCEEEEEcccccccccCCCC-----
Confidence            45688887777653      34999999888766  44431222 2  388999987665543          24     


Q ss_pred             CeEEEEeCCCCceeEEeecC--------CceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEE
Q 014007          156 NKVMIWDDHQSRCIGELSFR--------SEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAV  222 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  222 (432)
                      +.|.+||..+++.+.++...        .....+.++|||++++.     ++.|.++|+.+++.+.++....    +..+
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~  184 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHI  184 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----ccee
Confidence            68999999999999888632        25678999999997762     4789999999999998885422    2233


Q ss_pred             ecCCCcEEEEeecCCCCcEEEEEccC-Cceee-----eeccCCcee-EEEEc-CCCCEEEEEcCCCceEEEEECCCCc--
Q 014007          223 SQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKF-----IMAHDSRIA-CFALT-QDGQLLATSSTKGTLVRIFNTLDGT--  292 (432)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~-----~~~~~~~i~-~~~~s-p~~~~l~~~~~dg~~i~vwd~~~~~--  292 (432)
                      .|.+...+++.  +.||.+.+.++.. +.+..     +..-...+. ...|. ++|++++ .+.+|. |++.|+.+..  
T Consensus       185 ~P~g~~~~~~~--~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~~  260 (386)
T 3sjl_D          185 FPTAPDTFFMH--CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDAK  260 (386)
T ss_dssp             EEEETTEEEEE--ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSCE
T ss_pred             ecCCCceeEEE--CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcce
Confidence            45444443332  2577777777765 33311     111112222 23554 6786555 555788 9999987654  


Q ss_pred             eEEEEEe--------CCCcCceEEEEECCCCCEEEEEeC----------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007          293 LLQEVRR--------GADRAEIYSLAFSSNAQWLAVSSD----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (432)
Q Consensus       293 ~~~~~~~--------~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (432)
                      .+..+..        +-.......++++++++.|+....          .+.|.++|+.+.+.+.               
T Consensus       261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~---------------  325 (386)
T 3sjl_D          261 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA---------------  325 (386)
T ss_dssp             ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE---------------
T ss_pred             eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE---------------
Confidence            3333320        001223445788999998887643          2579999999987321               


Q ss_pred             CceeEeecccceeecceeeEEEEecCCCceEEEEccCCC-EEEEEec-CCeEEEEEecCCCCCcceEee
Q 014007          355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILGM-DGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~-dg~v~iw~~~~~~~~~~~~~~  421 (432)
                                          .+... ..++.++|++|++ +|++++. ++.|.++|  ..+++.+..++
T Consensus       326 --------------------~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD--~~t~k~~~~i~  371 (386)
T 3sjl_D          326 --------------------KFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHD--AESGEELRSVN  371 (386)
T ss_dssp             --------------------EEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEE--TTTCCEEEEEC
T ss_pred             --------------------EEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEE--CCCCcEEEEec
Confidence                                22221 1478999999997 6776554 89999965  46667665554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.59  E-value=7e-12  Score=120.24  Aligned_cols=189  Identities=10%  Similarity=0.059  Sum_probs=143.1

Q ss_pred             eCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcC--CCeeeEEEee
Q 014007          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFA--DLKLLHQIET  212 (432)
Q Consensus       138 ~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~--~~~~~~~~~~  212 (432)
                      ++...++++...+     +.|.++|..+++.+.++.....+..+.++|||++++.   ++.|.+||+.  +++.+..+..
T Consensus       164 d~~~~~~V~~~~~-----~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~  238 (567)
T 1qks_A          164 DLENLFSVTLRDA-----GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  238 (567)
T ss_dssp             CGGGEEEEEETTT-----TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCCceEEEEeCCC-----CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence            3556777777777     9999999999999999987777889999999998773   7899999995  7788888766


Q ss_pred             ccCCcceEEEe----cCCCcEEEEeecCCCCcEEEEEccCCcee-eeec----------c-CCceeEEEEcCCCCEE-EE
Q 014007          213 IANPKGLCAVS----QGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMA----------H-DSRIACFALTQDGQLL-AT  275 (432)
Q Consensus       213 ~~~~~~~~~~~----~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~----------~-~~~i~~~~~sp~~~~l-~~  275 (432)
                      ... ...++++    |+|+.++++.  ..++.|.++|..+.+.. .+..          | ...+..+..++++..+ +.
T Consensus       239 G~~-P~~ia~s~~~~pDGk~l~v~n--~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          239 GSE-ARSIETSKMEGWEDKYAIAGA--YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             CSE-EEEEEECCSTTCTTTEEEEEE--EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             CCC-CceeEEccccCCCCCEEEEEE--ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence            444 3578999    6999887664  46799999998874432 2221          2 2267888899876554 44


Q ss_pred             EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCC
Q 014007          276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (432)
Q Consensus       276 ~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~  336 (432)
                      ...+|. |.++|..+.+.+...... .......+.|+|+|++|+++. .++.|.++|+.+++
T Consensus       316 ~~~~g~-v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k  375 (567)
T 1qks_A          316 VKETGK-ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  375 (567)
T ss_dssp             ETTTTE-EEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             ecCCCe-EEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            556677 999999876544332221 234677899999999987766 67899999999876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=4.8e-12  Score=112.97  Aligned_cols=237  Identities=10%  Similarity=0.054  Sum_probs=162.9

Q ss_pred             CCCeEEEEEcCCCCEEEE-------Ec-CCcEEEEEcCCCeeEEEeec-ccCcceeEEEEeeeCC-eEEEecCCCCCCCC
Q 014007           85 PPTLLHISFNQDHGCFAA-------GT-DHGFRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCN-ILALVGGGPDPQYP  154 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~-------~~-~~~i~iw~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~  154 (432)
                      -....+++|+++|+++++       +. +++|.+|+..+++......- ..++...+..+.++++ +.++++...     
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-----   91 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-----   91 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence            345688999999988877       33 66699999776654321110 0023456888999998 776665543     


Q ss_pred             CCeEEEEeCCCCceeEE-ee-----cCCceEEEEEecCccEEEeC------------------CeEEEEEcCCCeeeEEE
Q 014007          155 LNKVMIWDDHQSRCIGE-LS-----FRSEVRSVKLRRDRIIVVLE------------------QKIFVYNFADLKLLHQI  210 (432)
Q Consensus       155 ~~~v~iwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~~~d------------------~~i~i~d~~~~~~~~~~  210 (432)
                       +.|.+||.. ++.... ..     ....+.++++++++.+.+.+                  +.|..||.. ++.....
T Consensus        92 -~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           92 -LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             -TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             -CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence             579999988 665433 22     12358899999999877742                  457777765 5443332


Q ss_pred             eeccCCcceEEEe----cCCCcEEEEeecCCCCcEEEEEcc-CCce------eeeeccC-CceeEEEEcCCCCEEEEEcC
Q 014007          211 ETIANPKGLCAVS----QGVGSLVLVCPGLQKGQVRVEHYA-SKRT------KFIMAHD-SRIACFALTQDGQLLATSST  278 (432)
Q Consensus       211 ~~~~~~~~~~~~~----~~~~~~~~~~~g~~d~~i~i~d~~-~~~~------~~~~~~~-~~i~~~~~sp~~~~l~~~~~  278 (432)
                       ........++++    ++++.++++.  ..++.|.+||.+ .+..      ..+..+. ..+..++++++|+++++...
T Consensus       169 -~~~~~~~~i~~~~~~d~dg~~l~v~~--~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          169 -TAFQFPNGIAVRHMNDGRPYQLIVAE--TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             -EEESSEEEEEEEECTTSCEEEEEEEE--TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             -cCCCCcceEEEecccCCCCCEEEEEE--CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence             223344678899    8887666543  357899999986 3321      1222333 56889999999998888777


Q ss_pred             CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE-eCCCeEEEEEecCC
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS-SDKGTVHVFNLKVN  335 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~  335 (432)
                      ++. |.+||..+++.+..+..  +...+.+++|+++|+.|+.+ ..++.|..|++...
T Consensus       246 ~~~-i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          246 SSH-IEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TTE-EEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCE-EEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            888 99999887887777764  33679999999999955544 46789999998753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.58  E-value=5.8e-13  Score=122.24  Aligned_cols=271  Identities=10%  Similarity=0.041  Sum_probs=180.8

Q ss_pred             CCCCEEEEEcC------CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC----------CCCCCCCCeE
Q 014007           95 QDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLNKV  158 (432)
Q Consensus        95 ~~~~~l~~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~~~v  158 (432)
                      ++++.+.+...      +.|.++|..+.+..  ..+.-+ ...  .+.+++++..++.+.          .+     +.|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv--~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~-----~~V  151 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL--GMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRT-----DYV  151 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEE--EEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEE-----EEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEE--EEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCC-----CEE
Confidence            35555544432      45999999988876  334312 223  788999987665554          24     689


Q ss_pred             EEEeCCCCceeEEeecC--------CceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecC
Q 014007          159 MIWDDHQSRCIGELSFR--------SEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  225 (432)
                      .++|..+++.+.++...        .....+.++|||++++.     ++.|.++|+.+++.+..+....    +..+.|+
T Consensus       152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~  227 (426)
T 3c75_H          152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPA  227 (426)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEE
T ss_pred             EEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccC
Confidence            99999999998888632        34568999999988772     4689999999999988886522    2455666


Q ss_pred             CCcEEEEeecCCCCcEEEEEccCCceee-----eeccCCce-eEEEEcCCCCEEEEEcCCCceEEEEECCCCceE--EEE
Q 014007          226 VGSLVLVCPGLQKGQVRVEHYASKRTKF-----IMAHDSRI-ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL--QEV  297 (432)
Q Consensus       226 ~~~~~~~~~g~~d~~i~i~d~~~~~~~~-----~~~~~~~i-~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~--~~~  297 (432)
                      ++..+++.+  .||.+.+.+...+.+..     +.....++ ..+.|.+++..++..+..+. |.+.|+......  ..+
T Consensus       228 g~~~~v~~~--~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~-V~ViD~~~~~~~v~~~~  304 (426)
T 3c75_H          228 SPTVFYMNC--RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGK-IFQADLTAEGATFRAPI  304 (426)
T ss_dssp             ETTEEEEEE--TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSE-EEEEEECSSCEEECCCE
T ss_pred             CCcEEEEEc--CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCc-EEEEeccCCceEEeeee
Confidence            666666543  47888888875444331     11111221 24567899888887788888 999998665432  122


Q ss_pred             EeCC--------CcCceEEEEECCCCCEEEEEeC----------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeE
Q 014007          298 RRGA--------DRAEIYSLAFSSNAQWLAVSSD----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI  359 (432)
Q Consensus       298 ~~~~--------~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (432)
                      ....        .......++++|+++.+++...          ++.|.++|+.+.+.+                     
T Consensus       305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv---------------------  363 (426)
T 3c75_H          305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI---------------------  363 (426)
T ss_dssp             ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---------------------
T ss_pred             eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE---------------------
Confidence            2100        0112223789999887776642          357999999998732                     


Q ss_pred             eecccceeecceeeEEEEecCCCceEEEEccCCC-EEEEEe-cCCeEEEEEecCCCCCcceEe
Q 014007          360 KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILG-MDGSFYRCQFDPVNGGEMTQL  420 (432)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~~  420 (432)
                                    .++.... ..+.++|+|||+ +++++. .++.|.++|.  .+++.+.++
T Consensus       364 --------------~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~--~t~kvv~tI  409 (426)
T 3c75_H          364 --------------NKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDA--ATGEELRSV  409 (426)
T ss_dssp             --------------EEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEET--TTCCEEEEE
T ss_pred             --------------EEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEEC--CCCCEEEEe
Confidence                          2222222 377899999999 888888 4999999665  666666554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=3.6e-12  Score=111.30  Aligned_cols=211  Identities=12%  Similarity=0.036  Sum_probs=156.3

Q ss_pred             CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeec
Q 014007           96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (432)
Q Consensus        96 ~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~  174 (432)
                      .+++|++++ ++.|.+||.++++........  ....+.++.+.+++.++++.  +     +.|+.||. +++.+..+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~--~~~~~~~~~~~pdG~ilvs~--~-----~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE--KGWECNSVAATKAGEILFSY--S-----KGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECC--TTCCCCEEEECTTSCEEEEC--B-----SEEEEECT-TSCEEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC--ccCCCcCeEECCCCCEEEeC--C-----CCEEEECC-CCCEEEEEcC
Confidence            456788887 444999999888877544331  22467788889999988854  3     78999998 8999999983


Q ss_pred             --CCceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeecc------CCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007          175 --RSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIA------NPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (432)
Q Consensus       175 --~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (432)
                        ...+.++.+.++|.+++.    ++.|..+|. +++.+..+....      .....+++.++|+.++  + ...++.|.
T Consensus        74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv--~-~~~~~~v~  149 (276)
T 3no2_A           74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV--P-LFATSEVR  149 (276)
T ss_dssp             CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE--E-ETTTTEEE
T ss_pred             CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEE--E-ecCCCEEE
Confidence              357889999999998884    346777774 788777765321      1334567788887543  2 34689999


Q ss_pred             EEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC----cCceEEEEECCCCCEE
Q 014007          243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----RAEIYSLAFSSNAQWL  318 (432)
Q Consensus       243 i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l  318 (432)
                      .||...+.+..+... ..+.++.+.++|++++++..++. |..+|..+|+.+.++.....    -..+..+...++|..+
T Consensus       150 ~~d~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~  227 (276)
T 3no2_A          150 EIAPNGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY  227 (276)
T ss_dssp             EECTTSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred             EECCCCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence            999985555555443 45677888999999999888888 99999999999999974211    1237889999999988


Q ss_pred             EEEe
Q 014007          319 AVSS  322 (432)
Q Consensus       319 ~~~~  322 (432)
                      ++..
T Consensus       228 v~~~  231 (276)
T 3no2_A          228 ICNW  231 (276)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8874

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=2.8e-12  Score=114.51  Aligned_cols=238  Identities=11%  Similarity=0.082  Sum_probs=159.0

Q ss_pred             eeEEEEeeeCCeEEEec-------CCCCCCCCCCeEEEEeCCCCceeEEee-----cCCceEEEEEecC-ccEEEe--CC
Q 014007          130 IGVVEMLFRCNILALVG-------GGPDPQYPLNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRRD-RIIVVL--EQ  194 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s-------~~~d~~~~~~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~~~~--d~  194 (432)
                      ....+++|++++.++++       +..+     +.|.+||..+++......     +...+.+++++++ +.+++.  ++
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~   92 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPA-----GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL   92 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEEC-----CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCC-----CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC
Confidence            34567888888877777       5555     899999988877543322     3467899999999 875553  45


Q ss_pred             eEEEEEcCCCeeeEE-Eee----ccCCcceEEEecCCCcEEEEeecCC-------------CCcEEEEEccCCceeeeec
Q 014007          195 KIFVYNFADLKLLHQ-IET----IANPKGLCAVSQGVGSLVLVCPGLQ-------------KGQVRVEHYASKRTKFIMA  256 (432)
Q Consensus       195 ~i~i~d~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~g~~-------------d~~i~i~d~~~~~~~~~~~  256 (432)
                      .|.+||.. ++.... ...    ....+..++++++++ ++++..+..             .+.|..+|.. +....+..
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            89999987 665332 211    113466889999875 444432210             1567777765 44444444


Q ss_pred             cCCceeEEEEc----CCCCEEEEE-cCCCceEEEEECC-CCceE--EEEEe-CCCc-CceEEEEECCCCCEEEEEeCCCe
Q 014007          257 HDSRIACFALT----QDGQLLATS-STKGTLVRIFNTL-DGTLL--QEVRR-GADR-AEIYSLAFSSNAQWLAVSSDKGT  326 (432)
Q Consensus       257 ~~~~i~~~~~s----p~~~~l~~~-~~dg~~i~vwd~~-~~~~~--~~~~~-~~~~-~~i~~~~~s~~~~~l~~~~~dg~  326 (432)
                      +......++|+    |+++.|+.+ ..++. |.+||.. +++..  ..+.. ..+. ..+..++++++|+++++...++.
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence            44567889999    999765554 56778 9999976 45421  12221 1122 45788999999998888878899


Q ss_pred             EEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE-ecCCeEE
Q 014007          327 VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL-GMDGSFY  405 (432)
Q Consensus       327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~  405 (432)
                      |.+||..+++..                                   ..+..+...+.+++|+++++.|+++ ..++.|.
T Consensus       249 i~~~d~~~g~~~-----------------------------------~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~  293 (314)
T 1pjx_A          249 IEVFGPDGGQPK-----------------------------------MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVW  293 (314)
T ss_dssp             EEEECTTCBSCS-----------------------------------EEEECSSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEEEcCCCCcEe-----------------------------------EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEE
Confidence            999998765521                                   1234455678999999999966555 4568888


Q ss_pred             EEEecC
Q 014007          406 RCQFDP  411 (432)
Q Consensus       406 iw~~~~  411 (432)
                      .|+++.
T Consensus       294 ~~~~~~  299 (314)
T 1pjx_A          294 KFEWQR  299 (314)
T ss_dssp             EEECSS
T ss_pred             EEeCCC
Confidence            887754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.58  E-value=4e-12  Score=116.00  Aligned_cols=232  Identities=11%  Similarity=0.006  Sum_probs=159.1

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecc-cC---cceeEEEEeeeCCeEEEecCCC--CCC
Q 014007           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE-RG---GGIGVVEMLFRCNILALVGGGP--DPQ  152 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~~~s~~~--d~~  152 (432)
                      .++|+|||++|+++.           ++.|.+||..+.+......+. ..   ....-..+.++|++..++.++.  +  
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~--  147 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG--  147 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC--
Confidence            789999999988875           344999999877665332221 00   0123447889999988776542  4  


Q ss_pred             CCCCeEEEEeCCCCceeEE-eecCCceEEEEEecCcc--EEE--eCCeEEEEEcCCCeeeEEEe-----eccCCc-ceEE
Q 014007          153 YPLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRI--IVV--LEQKIFVYNFADLKLLHQIE-----TIANPK-GLCA  221 (432)
Q Consensus       153 ~~~~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~--~~~--~d~~i~i~d~~~~~~~~~~~-----~~~~~~-~~~~  221 (432)
                         +.|.++| .+++.+.. +.....   +.+.+++.  ++.  .||.+.++|. +++......     ....++ ....
T Consensus       148 ---~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~  219 (373)
T 2mad_H          148 ---PAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA  219 (373)
T ss_pred             ---CeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence               7899999 99998888 764443   34455543  222  3899999999 877664332     111121 1245


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccCCceee---eec----------cCCceeEEEEcCCCCEEEEEcC----------
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMA----------HDSRIACFALTQDGQLLATSST----------  278 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~---~~~----------~~~~i~~~~~sp~~~~l~~~~~----------  278 (432)
                      +.+++..+++++   ..+.+.+.|+.......   +..          .......+.++|+++.|+++..          
T Consensus       220 ~~~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~  296 (373)
T 2mad_H          220 QANKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAA  296 (373)
T ss_pred             eEecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCC
Confidence            667777666654   46789999987643221   110          1223445889999998887653          


Q ss_pred             CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC-EEEEEe-CCCeEEEEEecCCCCC
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGS  338 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~  338 (432)
                      .+. |.++|+.+++.+.++..+   ....+++|+|||+ +++++. .++.|.+||+.+++.+
T Consensus       297 ~~~-V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          297 AKE-VTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CCe-EEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence            346 999999999999999743   4689999999999 777776 5899999999998854

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.57  E-value=2e-13  Score=136.71  Aligned_cols=246  Identities=10%  Similarity=0.034  Sum_probs=160.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC--
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGTDH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY--  153 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~--  153 (432)
                      .+|...+..++|||||++||.+.+.      .|++||+++++.... .+   +...+..+.|+++ ..|+.+..+...  
T Consensus       159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~---~~~~~~~~~wspD-~~l~~~~~~~~~~~  233 (741)
T 1yr2_A          159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL---KWVKFSGLAWLGN-DALLYSRFAEPKEG  233 (741)
T ss_dssp             ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE---EEEESCCCEESTT-SEEEEEECCCC---
T ss_pred             cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC---CCceeccEEEECC-CEEEEEEecCcccc
Confidence            3344478899999999999887532      399999998876421 11   2223357889998 665554433110  


Q ss_pred             -------CCCeEEEEeCCCCce--eEEee---cCCceEEEEEecCccEEEe---C-----CeEEEEEcCCC--eeeEEEe
Q 014007          154 -------PLNKVMIWDDHQSRC--IGELS---FRSEVRSVKLRRDRIIVVL---E-----QKIFVYNFADL--KLLHQIE  211 (432)
Q Consensus       154 -------~~~~v~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~~~---d-----~~i~i~d~~~~--~~~~~~~  211 (432)
                             ....|++|++.++..  ...+.   +...+..+.|+|||++++.   +     ..|++||+.++  +....+.
T Consensus       234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~  313 (741)
T 1yr2_A          234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI  313 (741)
T ss_dssp             -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred             cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence                   014599999987753  22333   2235889999999987772   3     28999999876  3145555


Q ss_pred             eccCCcceEEEecCCCcEEEEeec-CCCCcEEEEEccCC--ceeee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007          212 TIANPKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASK--RTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~--~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd  287 (432)
                      .+....... ++++++.+++.+.. ..++.|.+||+.+.  ....+ ..+...+..+.++ ++.++++...|+. .+||.
T Consensus       314 ~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~  390 (741)
T 1yr2_A          314 PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLA  390 (741)
T ss_dssp             CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEE
T ss_pred             CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEE
Confidence            444444333 46899988776532 12567999998873  33443 3445557778887 6677888888887 66665


Q ss_pred             CC-CCceEEEEEeCCCcCceEEEEECCCCCEEEEE----eCCCeEEEEEecCCC
Q 014007          288 TL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS----SDKGTVHVFNLKVNS  336 (432)
Q Consensus       288 ~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~  336 (432)
                      +. +++.+..+... ....+..+.++|+++.|+..    ...++|++||+.+++
T Consensus       391 ~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          391 FDLDGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EETTSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EeCCCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            43 46666666532 34678999999998866533    245789999998765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.56  E-value=7.9e-12  Score=115.66  Aligned_cols=234  Identities=9%  Similarity=0.079  Sum_probs=160.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC--eEEEE
Q 014007           85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN--KVMIW  161 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~--~v~iw  161 (432)
                      -.....|+|+++|+++++... +.|++|+.+++.....  .. .... .. +++++++..++.++.+     +  .|.+|
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~--~~-~~~~-~~-ia~~~~g~~l~~~d~~-----~~~~I~~~  199 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV--HP-GFKG-GK-PAVTKDKQRVYSIGWE-----GTHTVYVY  199 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE--EE-TCCB-CB-CEECTTSSEEEEEBSS-----TTCEEEEE
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe--ec-cCCC-Cc-eeEecCCCcEEEEecC-----CCceEEEE
Confidence            457889999999997777764 4499999887665422  22 1222 22 7888888766555543     3  89999


Q ss_pred             eCCCCceeEEe----e-cCCceEEEEEec-CccEEEe--CCeEEEEEcCCCeeeEE----EeeccCCc--ceEEEecCCC
Q 014007          162 DDHQSRCIGEL----S-FRSEVRSVKLRR-DRIIVVL--EQKIFVYNFADLKLLHQ----IETIANPK--GLCAVSQGVG  227 (432)
Q Consensus       162 d~~~~~~~~~~----~-~~~~v~~~~~~~-~~~~~~~--d~~i~i~d~~~~~~~~~----~~~~~~~~--~~~~~~~~~~  227 (432)
                      +...+.....+    . ....+.+++++| ++.+++.  ++.|+.||..++.....    ........  ..++++|++.
T Consensus       200 d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g  279 (409)
T 3hrp_A          200 MKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDS  279 (409)
T ss_dssp             EGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTT
T ss_pred             EcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCC
Confidence            98766554444    2 456678999999 5665554  57899999887653221    11111112  2899999777


Q ss_pred             cEEEEeecCCCCcEEEEEccCCceeeeeccC---------------CceeEEEEcCCCCEEEEEc-CCCceEEEEECCCC
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------------SRIACFALTQDGQLLATSS-TKGTLVRIFNTLDG  291 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---------------~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~  291 (432)
                      .++++-  ..++.|+.|+.+.. ...+.++.               .....++++|+|+++++-. .++. |+.||+.++
T Consensus       280 ~lyv~d--~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G  355 (409)
T 3hrp_A          280 NFYMSD--QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDG  355 (409)
T ss_dssp             EEEEEE--TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTT
T ss_pred             EEEEEe--CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCC
Confidence            777653  45788999987765 33333332               3478999999999777777 7888 999998888


Q ss_pred             ceEEEEEeCC-------------CcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          292 TLLQEVRRGA-------------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       292 ~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      +.. .+.+..             .-.....++++++|.++++-..+++|+.++++
T Consensus       356 ~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          356 YVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            654 343320             01358999999998888888888999988763

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.56  E-value=9.1e-12  Score=115.25  Aligned_cols=247  Identities=10%  Similarity=0.030  Sum_probs=159.4

Q ss_pred             eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-e--CC--eEEEEEcCCC
Q 014007          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L--EQ--KIFVYNFADL  204 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~--d~--~i~i~d~~~~  204 (432)
                      .....+++++++.++++...+     +.|++||..++............. ++|++++..++ .  ++  .|.+++...+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~-----~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDD-----PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTT-----TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CCceEEEEeCCCCEEEEecCC-----CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            356788899998888887766     899999988777665555433344 99999998665 3  23  8999998765


Q ss_pred             eeeEEE----eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee----e-ccCCce-e-EEEEcCC-CCE
Q 014007          205 KLLHQI----ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI----M-AHDSRI-A-CFALTQD-GQL  272 (432)
Q Consensus       205 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~----~-~~~~~i-~-~~~~sp~-~~~  272 (432)
                      .....+    .........++++|++..++++   ..++.|+.||..++....+    . ++...- . .++|+|+ +.+
T Consensus       205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~---d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFV---DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             TCEEEEEECCTTSCSCCCBCEECTTSSEEEEE---CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             ceeEEeeeccchhcCCcEEEEEeCCCCeEEEE---ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            443333    1133456689999976667663   2478999999987665444    1 122222 3 9999995 666


Q ss_pred             EEEEcCCCceEEEEECCCCceEEEEEeCC-------------CcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCC
Q 014007          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGA-------------DRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGS  338 (432)
Q Consensus       273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~  338 (432)
                      +++...++. |+.||.. ++ +..+.+..             .-.....++++++|+++++-+ .+++|+.|++.+++..
T Consensus       282 yv~d~~~~~-I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          282 YMSDQNLSS-VYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS  358 (409)
T ss_dssp             EEEETTTTE-EEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred             EEEeCCCCE-EEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence            666667777 9999864 44 33333321             013478999999999777777 8899999997666411


Q ss_pred             CCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                       ......                ....+.....    ....-.....++++++|+++++-..++.|+.+.+
T Consensus       359 -~~~g~~----------------~~~g~~~g~~----~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          359 -TVAGQV----------------DVASQIDGTP----LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -EEEECT----------------TCBSCCCBST----TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -EEeCCC----------------CCCCcCCCCh----hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             000000                0000000000    0000134778999999888888888888888765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.54  E-value=5.9e-12  Score=113.48  Aligned_cols=232  Identities=13%  Similarity=0.032  Sum_probs=154.2

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecccCc----ceeEEEEeeeCCeEEEecCC--CCCC
Q 014007           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGG--PDPQ  152 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~s~~--~d~~  152 (432)
                      .++++|||++|+++.           ++.|.+||..+.+......+..+.    ...-..+.+++++..+..++  .+  
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~--  159 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA--  159 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS--
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC--
Confidence            399999999887764           344999999988766433332100    12345678899987665543  24  


Q ss_pred             CCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc-c-EEE--eCCeEEEEEcCC-CeeeEEEeec----cCCcc-eEEE
Q 014007          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-I-IVV--LEQKIFVYNFAD-LKLLHQIETI----ANPKG-LCAV  222 (432)
Q Consensus       153 ~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~--~d~~i~i~d~~~-~~~~~~~~~~----~~~~~-~~~~  222 (432)
                         +.|.++|+.+++.+.++...+.   ..+.|.+ + +++  .||++.+.++.+ ++........    ..++. ...|
T Consensus       160 ---~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~  233 (386)
T 3sjl_D          160 ---PAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY  233 (386)
T ss_dssp             ---CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE
T ss_pred             ---CeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccccee
Confidence               7999999999999999875442   1222433 2 222  388888888876 5543221111    11111 1355


Q ss_pred             e-cCCCcEEEEeecCCCCcEEEEEccCCceeeeec-------------cCCceeEEEEcCCCCEEEEEcC----------
Q 014007          223 S-QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSST----------  278 (432)
Q Consensus       223 ~-~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~----------  278 (432)
                      . ++| .+++++   .+|.|++.|+.+........             .......++++++++.|+....          
T Consensus       234 ~~~dG-~~~~vs---~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~  309 (386)
T 3sjl_D          234 SQKAG-RLVWPT---YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA  309 (386)
T ss_dssp             ETTTT-EEEEEB---TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred             EcCCC-cEEEEe---CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCC
Confidence            4 455 444454   46899999997754322111             1234456788999998888653          


Q ss_pred             CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC-EEEEE-eCCCeEEEEEecCCCC
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVS-SDKGTVHVFNLKVNSG  337 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~~~  337 (432)
                      .+. |.++|+.+++.+..+..+   ..+.+|++++|++ +|+++ ..++.|.++|..+++.
T Consensus       310 ~~~-V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          310 SRF-VVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             EEE-EEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             CCE-EEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence            145 999999999999999854   4788999999997 66665 4689999999999884

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.53  E-value=1.1e-11  Score=109.92  Aligned_cols=222  Identities=9%  Similarity=-0.016  Sum_probs=152.2

Q ss_pred             CCCCeEEEEEcCCCCE-EEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007           84 PPPTLLHISFNQDHGC-FAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~-l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw  161 (432)
                      +..--.+..|++++.. +.+.. .+.|..|+.++....   .+.  ....+..+++++++.++++.  +     +.|.+|
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~~--~~~~~~~i~~~~dG~l~v~~--~-----~~l~~~   78 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---RVT--MDAPVSSVALRQSGGYVATI--G-----TKFCAL   78 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EEE--CSSCEEEEEEBTTSSEEEEE--T-----TEEEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---EEe--CCCceEEEEECCCCCEEEEE--C-----CeEEEE
Confidence            4445568899996554 44544 445999998776542   222  33567889999998877765  3     789999


Q ss_pred             eCCCCceeEEeec-----CCceEEEEEecCccEEEeC------------CeEEEEEcCC-CeeeEEEeeccCCcceEEEe
Q 014007          162 DDHQSRCIGELSF-----RSEVRSVKLRRDRIIVVLE------------QKIFVYNFAD-LKLLHQIETIANPKGLCAVS  223 (432)
Q Consensus       162 d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~d------------~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~  223 (432)
                      |..+++.......     ...+.+++++++|++.+.+            ..-.+|.+.. ++... +.........++|+
T Consensus        79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~s  157 (297)
T 3g4e_A           79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWS  157 (297)
T ss_dssp             ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEEC
T ss_pred             ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEc
Confidence            9988765433321     2347889999999877742            2234554432 33332 22233344679999


Q ss_pred             cCCCcEEEEeecCCCCcEEEEEcc--CCcee------eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEE
Q 014007          224 QGVGSLVLVCPGLQKGQVRVEHYA--SKRTK------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (432)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~  295 (432)
                      |+++.++++.  ..++.|.+|+++  ++.+.      .+..+...+..++++++|++.++....+. |.+||..+++.+.
T Consensus       158 pdg~~lyv~~--~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~  234 (297)
T 3g4e_A          158 LDHKIFYYID--SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQ  234 (297)
T ss_dssp             TTSCEEEEEE--GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEE
T ss_pred             CCCCEEEEec--CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEE
Confidence            9998877654  356889999974  33321      12234457889999999988877777788 9999998899999


Q ss_pred             EEEeCCCcCceEEEEEC-CCCCEEEEEeC
Q 014007          296 EVRRGADRAEIYSLAFS-SNAQWLAVSSD  323 (432)
Q Consensus       296 ~~~~~~~~~~i~~~~~s-~~~~~l~~~~~  323 (432)
                      .+..+  ...+++++|. |+++.|+.++.
T Consensus       235 ~i~~p--~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          235 TVKLP--VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEECS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEECC--CCCceEEEEeCCCCCEEEEEcC
Confidence            88853  3679999998 88887766553

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.52  E-value=1.7e-12  Score=128.82  Aligned_cols=245  Identities=11%  Similarity=0.091  Sum_probs=161.5

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEc-----CCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC--
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGT-----DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ--  152 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~-----~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~--  152 (432)
                      ..+|...+..++|||||++||.+.     +.. |++||+++++.... .+   .......+.|+ |+..|+.+..+..  
T Consensus       124 a~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~---~~~k~~~~~Ws-Dg~~l~y~~~~~~~~  198 (693)
T 3iuj_A          124 SPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL---KDVKFSGISWL-GNEGFFYSSYDKPDG  198 (693)
T ss_dssp             STTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE---EEEESCCCEEE-TTTEEEEEESSCCC-
T ss_pred             cCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc---CCceeccEEEe-CCCEEEEEEecCccc
Confidence            345667899999999999998654     222 99999998875422 22   11223456777 7655544433310  


Q ss_pred             ------CCCCeEEEEeCCCCce--eEEeec----CCceEEEEEecCccEEEe-------CCeEEEEEcCCCe-eeEEEee
Q 014007          153 ------YPLNKVMIWDDHQSRC--IGELSF----RSEVRSVKLRRDRIIVVL-------EQKIFVYNFADLK-LLHQIET  212 (432)
Q Consensus       153 ------~~~~~v~iwd~~~~~~--~~~~~~----~~~v~~~~~~~~~~~~~~-------d~~i~i~d~~~~~-~~~~~~~  212 (432)
                            -....|++|++.++..  ...+..    ...+..+.|+|||++++.       .+.|+++|+.++. ....+..
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~  278 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG  278 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence                  1125699999987653  233332    234678999999998862       2489999997763 3445555


Q ss_pred             ccCCcceEEEecCCCcEEEEeec-CCCCcEEEEEccCCce---eeeeccCCceeEEEEcCCCCEEEEEcCCC---ceEEE
Q 014007          213 IANPKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRI  285 (432)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~~i~v  285 (432)
                      +....... ++++++.+++.+.. ...+.|..+|+.+...   +.+..|...+.  .|++++++|+....++   . |++
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~-l~~  354 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR-VEQ  354 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE-EEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE-EEE
Confidence            44444333 78888888776522 1247899999987543   56666766665  8999998887766544   5 889


Q ss_pred             EECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC----CeEEEEEecCCC
Q 014007          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK----GTVHVFNLKVNS  336 (432)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~  336 (432)
                      ||+.. .....+... ....+..+.++++++.|+....+    ++|+.||+.+++
T Consensus       355 ~d~~g-~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          355 FDYEG-KRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             ECTTS-CEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EECCC-CeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            99864 444555432 33567888889888877655444    789999987765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.51  E-value=5.2e-11  Score=106.87  Aligned_cols=223  Identities=10%  Similarity=-0.001  Sum_probs=147.0

Q ss_pred             EEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEE
Q 014007          133 VEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQI  210 (432)
Q Consensus       133 ~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~  210 (432)
                      ....|+++ +..+++...+     +.|..||..+++. ..+.....+.++++++++.+++ .++.|.+||..+++.....
T Consensus        52 egp~~~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILE-----RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGG-----TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             cCCeEeCCCCEEEEEECCC-----CEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEe
Confidence            45567775 4555555455     8999999887654 3445567899999999998777 4667999998887653322


Q ss_pred             eec----cCCcceEEEecCCCcEEEEeecC----CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEE-cCCCc
Q 014007          211 ETI----ANPKGLCAVSQGVGSLVLVCPGL----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGT  281 (432)
Q Consensus       211 ~~~----~~~~~~~~~~~~~~~~~~~~~g~----~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~  281 (432)
                      ...    ...+..++++++|+ ++++..+.    ..+.|..++  .+....+..+......++|+|+|+.|+.+ +.++.
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            211    12356788999886 44443221    124555555  44444444444567899999999876554 55677


Q ss_pred             eEEEEECC--CC-ce--EEEEEe-CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 014007          282 LVRIFNTL--DG-TL--LQEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSS  355 (432)
Q Consensus       282 ~i~vwd~~--~~-~~--~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  355 (432)
                       |.+||+.  ++ +.  ...+.. ......+..++++++|.++++...++.|.+||. +++.                  
T Consensus       203 -I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~------------------  262 (326)
T 2ghs_A          203 -LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH------------------  262 (326)
T ss_dssp             -EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE------------------
T ss_pred             -EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE------------------
Confidence             9999986  55 32  122221 112345788999999998777767788999987 3431                  


Q ss_pred             ceeEeecccceeecceeeEEEEecCCCceEEEEc-cCCCEEEEEecC
Q 014007          356 LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG-HQKNTVVILGMD  401 (432)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d  401 (432)
                                       +..+..+...+.+++|+ ++++.|++++..
T Consensus       263 -----------------~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          263 -----------------IARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             -----------------EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             -----------------EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence                             23455566679999998 888877665543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.50  E-value=2.1e-10  Score=101.26  Aligned_cols=232  Identities=7%  Similarity=-0.042  Sum_probs=160.4

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe-e-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-S-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA  202 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~  202 (432)
                      +...+.++++++++...++...+     +.|.+||.. ++..... . ....+.++++.+++.+.++   ++.|..||..
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~-----~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKA-----NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTT-----TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             cCCCccceEECCCCCEEEEecCC-----CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            44678899999998888776655     899999987 5433222 1 4567899999999887764   5689999975


Q ss_pred             CCeeeEEEee--ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee--ccCCceeEEEEcCCCCEEEEEcC
Q 014007          203 DLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSST  278 (432)
Q Consensus       203 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~  278 (432)
                       ++. ..+..  ....+..+++.+++. ++++.  ..++.|.+||. .+....+.  .+...+..++++++|+++++...
T Consensus        87 -g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~--~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  160 (299)
T 2z2n_A           87 -GII-KEYTLPNPDSAPYGITEGPNGD-IWFTE--MNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ  160 (299)
T ss_dssp             -SCE-EEEECSSTTCCEEEEEECTTSC-EEEEE--TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred             -CcE-EEEeCCCcCCCceeeEECCCCC-EEEEe--cCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence             432 33321  233556788888764 44432  34688999998 44443332  34567899999999988887777


Q ss_pred             CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF  358 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (432)
                      ++. |..||. +++... +........+..++++++|+++++...++.|.+||. +++..                    
T Consensus       161 ~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~--------------------  216 (299)
T 2z2n_A          161 NNA-IGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT--------------------  216 (299)
T ss_dssp             TTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE--------------------
T ss_pred             CCE-EEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE--------------------
Confidence            788 999998 766543 322223356889999999997777767889999998 55410                    


Q ss_pred             EeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                                    ......+...+..++++++|+..++...++.|.+|+.
T Consensus       217 --------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          217 --------------EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             --------------EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             --------------EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence                          0001122346788999999986666556788888765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.45  E-value=1.1e-11  Score=113.70  Aligned_cols=234  Identities=15%  Similarity=0.097  Sum_probs=159.3

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecccC----cceeEEEEeeeCCeEEEecCCC--CCC
Q 014007           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERG----GGIGVVEMLFRCNILALVGGGP--DPQ  152 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~s~~~--d~~  152 (432)
                      .+.++|||++|+++.           ++.|.++|..+.+......+.+.    .......+.+++++..++.+..  +  
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~--  199 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA--  199 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS--
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC--
Confidence            799999999887775           33499999988876633333100    0123346788999876665432  4  


Q ss_pred             CCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc--cEEE--eCCeEEEEEcCCCeeeEE----EeeccCCc-ceEEEe
Q 014007          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVV--LEQKIFVYNFADLKLLHQ----IETIANPK-GLCAVS  223 (432)
Q Consensus       153 ~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~~~~~~~----~~~~~~~~-~~~~~~  223 (432)
                         +.|.+.|+.+++.+.++...+.   ....|++  .++.  -||.+.+.++.+++....    +.....++ ..+.+.
T Consensus       200 ---~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~  273 (426)
T 3c75_H          200 ---PAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS  273 (426)
T ss_dssp             ---CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC
T ss_pred             ---CeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec
Confidence               7899999999999988885432   2333433  2222  277777778755554422    21112222 235678


Q ss_pred             cCCCcEEEEeecCCCCcEEEEEccCCceeeeec-------------cCCceeEEEEcCCCCEEEEEcC----------CC
Q 014007          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSST----------KG  280 (432)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~----------dg  280 (432)
                      +++..++++.   ..+.|.+.|........+..             .......++++|+++.|++...          .+
T Consensus       274 ~dg~~~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~  350 (426)
T 3c75_H          274 LRSGRLVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR  350 (426)
T ss_dssp             TTTCEEEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEE
T ss_pred             CCCCEEEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCC
Confidence            9998887764   46889999987644322110             1122234789999988777642          34


Q ss_pred             ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC-EEEEEe-CCCeEEEEEecCCCCC
Q 014007          281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGS  338 (432)
Q Consensus       281 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~  338 (432)
                      . |.++|+.+++.+.++..+   .....+.|+|||+ +++++. .++.|.++|+.+++.+
T Consensus       351 ~-VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          351 F-VVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             E-EEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             E-EEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence            6 999999999999999854   4588999999999 888887 5999999999998843

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.44  E-value=2.5e-10  Score=102.39  Aligned_cols=216  Identities=10%  Similarity=0.053  Sum_probs=147.9

Q ss_pred             CeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007           87 TLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        87 ~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      -..+..|+|++. ++.++. +++|..|+.++++...   +.  ....+.++.+++++.++++..       ..|.+||..
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---~~--~~~~v~~i~~~~dg~l~v~~~-------~gl~~~d~~  117 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV---HA--LPFMGSALAKISDSKQLIASD-------DGLFLRDTA  117 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE---EE--CSSCEEEEEEEETTEEEEEET-------TEEEEEETT
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE---EE--CCCcceEEEEeCCCeEEEEEC-------CCEEEEECC
Confidence            456789999855 445554 4459999987765432   22  234678889999988877653       459999988


Q ss_pred             CCceeEEeec-----CCceEEEEEecCccEEEeC---------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007          165 QSRCIGELSF-----RSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       165 ~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      +++.......     ...+.+++++++|++.+.+         +.|..++  +++... +.........++|+++++.++
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEE
T ss_pred             CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEE
Confidence            8775433221     2358899999999877642         3566666  455433 322333456789999998877


Q ss_pred             EEeecCCCCcEEEEEcc--CC-ce---eee---eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC
Q 014007          231 LVCPGLQKGQVRVEHYA--SK-RT---KFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~--~~-~~---~~~---~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~  301 (432)
                      ++.  ..++.|.+||++  ++ .+   ..+   ......+..++++++|+++++...++. |.+||. +++.+..+..+ 
T Consensus       195 v~~--~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~~-  269 (326)
T 2ghs_A          195 FVD--TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEVP-  269 (326)
T ss_dssp             EEE--TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEECS-
T ss_pred             EEE--CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEECC-
Confidence            653  356899999986  34 22   122   223456788999999987777666778 999997 68887777743 


Q ss_pred             CcCceEEEEEC-CCCCEEEEEeC
Q 014007          302 DRAEIYSLAFS-SNAQWLAVSSD  323 (432)
Q Consensus       302 ~~~~i~~~~~s-~~~~~l~~~~~  323 (432)
                       ...+++++|+ ++++.|++++.
T Consensus       270 -~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          270 -GKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             -CSBEEEEEEESTTSCEEEEEEB
T ss_pred             -CCCcEEEEEecCCCCEEEEEec
Confidence             3579999998 88887765553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.44  E-value=7.6e-11  Score=104.79  Aligned_cols=228  Identities=11%  Similarity=0.005  Sum_probs=152.1

Q ss_pred             CCCCCeEEEEEcCCCC-EEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           83 SPPPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~-~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      ..........|+|+|+ ++.++.. +.|..|+.+ ++..   .+. .....+..+.+++++.++++...+     +.|.+
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~---~~~-~~~~~~~gl~~d~dG~l~v~~~~~-----~~v~~  111 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD---VLL-DATAFTNGNAVDAQQRLVHCEHGR-----RAITR  111 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE---EEE-ESCSCEEEEEECTTSCEEEEETTT-----TEEEE
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE---EEe-CCCCccceeeECCCCCEEEEECCC-----CEEEE
Confidence            3445677899999999 4455554 449999874 3322   222 244567889999999888876655     78999


Q ss_pred             EeCCCCceeEEee-----cCCceEEEEEecCccEEEeC--------------------CeEEEEEcCCCeeeEEEeeccC
Q 014007          161 WDDHQSRCIGELS-----FRSEVRSVKLRRDRIIVVLE--------------------QKIFVYNFADLKLLHQIETIAN  215 (432)
Q Consensus       161 wd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~d--------------------~~i~i~d~~~~~~~~~~~~~~~  215 (432)
                      |+.. ++......     ....+.++++.++|.+.++|                    +.|+.||..+++.....  ...
T Consensus       112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~  188 (305)
T 3dr2_A          112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD  188 (305)
T ss_dssp             ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred             ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence            9975 55332222     12346789999999988853                    45777887666544332  333


Q ss_pred             CcceEEEecCCCcEEEEeecC---CCCcEEEEEccCCcee---ee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007          216 PKGLCAVSQGVGSLVLVCPGL---QKGQVRVEHYASKRTK---FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~---~d~~i~i~d~~~~~~~---~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~  288 (432)
                      ....++|+|+++.++++....   ..+.|.+|++....+.   .+ .........++++++|++. +++.+ . |.+||.
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-g-v~~~~~  265 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-G-VCVFDS  265 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-E-EEEECT
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-c-EEEECC
Confidence            445789999998887764210   0368999998764321   11 1123456678999999954 44444 5 999996


Q ss_pred             CCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007          289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       289 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  331 (432)
                       +++.+..+...   ..+.+++|+++++.|..++.++ ++.++
T Consensus       266 -~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          266 -DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             -TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             -CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence             78888888743   3588999999998888887654 44333

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.43  E-value=1.1e-09  Score=99.35  Aligned_cols=188  Identities=12%  Similarity=0.094  Sum_probs=124.4

Q ss_pred             eEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEee--------cCCceEEEEEecCccEEEe--C------CeEEEEE
Q 014007          141 ILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS--------FRSEVRSVKLRRDRIIVVL--E------QKIFVYN  200 (432)
Q Consensus       141 ~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~~~~--d------~~i~i~d  200 (432)
                      ..+++++..+     +.|+++|+.+.    +.+++++        .......+.+.|+|.++..  +      +.|.++|
T Consensus        96 ~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           96 RFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEEC
T ss_pred             CEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEE
Confidence            3455667666     89999999765    5666662        1124567788999944442  3      6899999


Q ss_pred             cCCCeeeEEEeeccCC---cceEEEecCCCcEEEEee-c----------------CCCCcEEEEEccCCcee-eeec--c
Q 014007          201 FADLKLLHQIETIANP---KGLCAVSQGVGSLVLVCP-G----------------LQKGQVRVEHYASKRTK-FIMA--H  257 (432)
Q Consensus       201 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-g----------------~~d~~i~i~d~~~~~~~-~~~~--~  257 (432)
                      ..+++.+..+.....+   -..+.|+|+++.++ ++. |                .....|.+||+.++++. ++..  .
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            9999999888643332   22477899988443 321 0                23689999999885433 3332  1


Q ss_pred             CCceeEEEE--cCCCCEEEEEcC------CCceEEEEECCCCce--EEEEEeCCC----------------cCceEEEEE
Q 014007          258 DSRIACFAL--TQDGQLLATSST------KGTLVRIFNTLDGTL--LQEVRRGAD----------------RAEIYSLAF  311 (432)
Q Consensus       258 ~~~i~~~~~--sp~~~~l~~~~~------dg~~i~vwd~~~~~~--~~~~~~~~~----------------~~~i~~~~~  311 (432)
                      ......+.|  +|+++++++++.      +++ |.+|....++.  .+.+.....                ......|.+
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~-V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSS-IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEE-EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCce-EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence            133455655  999999888775      446 87776655432  222211110                134688999


Q ss_pred             CCCCCEEEEEe-CCCeEEEEEecCC
Q 014007          312 SSNAQWLAVSS-DKGTVHVFNLKVN  335 (432)
Q Consensus       312 s~~~~~l~~~~-~dg~i~iwd~~~~  335 (432)
                      |+||++|.++. ..+.|.+||+...
T Consensus       329 S~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          329 SLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             CTTSCEEEEEETTTTEEEEEECSST
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCC
Confidence            99999998877 5789999999744

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.42  E-value=2.6e-10  Score=101.36  Aligned_cols=223  Identities=13%  Similarity=0.051  Sum_probs=146.4

Q ss_pred             eeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC
Q 014007          130 IGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL  204 (432)
Q Consensus       130 ~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~  204 (432)
                      .......|++++. +++++..+     +.|..|+. +++. ..+. ....+.+++++++|++++.   ++.|.+|+.. +
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~-----~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVG-----RRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTT-----TEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cCccCCeEeCCCCEEEEEECCC-----CEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            3455678888876 55666666     89999997 5553 3444 6677899999999997775   3689999975 5


Q ss_pred             eeeEEEeec----cCCcceEEEecCCCcEEEEee--cCC-------------CCcEEEEEccCCceeeeeccCCceeEEE
Q 014007          205 KLLHQIETI----ANPKGLCAVSQGVGSLVLVCP--GLQ-------------KGQVRVEHYASKRTKFIMAHDSRIACFA  265 (432)
Q Consensus       205 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--g~~-------------d~~i~i~d~~~~~~~~~~~~~~~i~~~~  265 (432)
                      +........    ...+..++++++|+ +++.-.  |..             .+.|..+|..++....+. .......++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~  194 (305)
T 3dr2_A          117 QAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLA  194 (305)
T ss_dssp             CEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEE
T ss_pred             CEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceE
Confidence            532222111    12355789999886 333210  111             256777777666655554 455678899


Q ss_pred             EcCCCCEEEEEcCC------CceEEEEECCCCceE--EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          266 LTQDGQLLATSSTK------GTLVRIFNTLDGTLL--QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       266 ~sp~~~~l~~~~~d------g~~i~vwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      |+|+++.|+.+...      +. |++||+..+...  ..+.. ........++++++|++.++ +.+ .|.+|+.. ++.
T Consensus       195 ~spdg~~lyv~~~~~~~~~~~~-i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~~-g~~  269 (305)
T 3dr2_A          195 FSPDEQTLYVSQTPEQGHGSVE-ITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDSD-GQL  269 (305)
T ss_dssp             ECTTSSEEEEEECCC---CCCE-EEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEEC-CSS-EEEEECTT-SCE
T ss_pred             EcCCCCEEEEEecCCcCCCCCE-EEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEEe-cCC-cEEEECCC-CCE
Confidence            99999988777665      67 999998765421  12211 12244567899999995544 444 49999874 331


Q ss_pred             CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCe
Q 014007          338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS  403 (432)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  403 (432)
                                                         +..+..+. .+..++|+++++.|++++.++.
T Consensus       270 -----------------------------------~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          270 -----------------------------------LGHIPTPG-TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             -----------------------------------EEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred             -----------------------------------EEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence                                               33344454 4889999999999998887643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.42  E-value=1.8e-11  Score=121.56  Aligned_cols=235  Identities=10%  Similarity=0.078  Sum_probs=152.7

Q ss_pred             CcceeEEEEeeeCCeEEEe-----cCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CC----
Q 014007          127 GGGIGVVEMLFRCNILALV-----GGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQ----  194 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~-----s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~----  194 (432)
                      ++...+..+.|+|++..++     +|+..     ..|++||+.+++.+...........++|+ |++.++.   +.    
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~-----~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDW-----REIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCE-----EEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC--
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCce-----EEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccc
Confidence            3555788889999998877     45444     68999999999865542222224578899 9887762   42    


Q ss_pred             ---------eEEEEEcCCCee--eEEEee---ccCCcceEEEecCCCcEEEEeec-CCCCcEEEEEccCC--ceeeeecc
Q 014007          195 ---------KIFVYNFADLKL--LHQIET---IANPKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASK--RTKFIMAH  257 (432)
Q Consensus       195 ---------~i~i~d~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~--~~~~~~~~  257 (432)
                               .|++|++.++..  ...+..   +......+.++|||+.+++.... .....|+++|+.++  ....+..+
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~  279 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD  279 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence                     499999887542  222222   22334578899999988766532 23468999999775  56667777


Q ss_pred             CCceeEEEEcCCCCEEEE-EcCC---CceEEEEECCCCce--EEEEEeCCCcCceEEEEECCCCCEEEEEeC-CC--eEE
Q 014007          258 DSRIACFALTQDGQLLAT-SSTK---GTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KG--TVH  328 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~-~~~d---g~~i~vwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~  328 (432)
                      ....... ++++|..|+. ...+   +. |..+|+.++..  ...+..+  ...+.  .|++++++|+.... ++  .|+
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~-l~~~d~~~~~~~~~~~l~~~--~~~~~--~~s~~g~~lv~~~~~~g~~~l~  353 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRR-LVTVDAANPGPAHWRDLIPE--RQQVL--TVHSGSGYLFAEYMVDATARVE  353 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCE-EEEEETTSCCGGGCEEEECC--CSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCE-EEEEeCCCCCccccEEEecC--CCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence            7666665 5666665554 4333   56 99999988754  3445543  33444  88999998877664 44  688


Q ss_pred             EEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEec-CCCceEEEEccCCCEEEEEecC----Ce
Q 014007          329 VFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIVAFGHQKNTVVILGMD----GS  403 (432)
Q Consensus       329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d----g~  403 (432)
                      +||+..+.                                    ...+..+ .+.+..+.++++++.|+....+    +.
T Consensus       354 ~~d~~g~~------------------------------------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~  397 (693)
T 3iuj_A          354 QFDYEGKR------------------------------------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPT  397 (693)
T ss_dssp             EECTTSCE------------------------------------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred             EEECCCCe------------------------------------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCE
Confidence            88877443                                    1112222 2346667778888877766554    67


Q ss_pred             EEEEEe
Q 014007          404 FYRCQF  409 (432)
Q Consensus       404 v~iw~~  409 (432)
                      ++.|++
T Consensus       398 l~~~d~  403 (693)
T 3iuj_A          398 LYRFEP  403 (693)
T ss_dssp             EEEECT
T ss_pred             EEEEEC
Confidence            777655

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.41  E-value=1.4e-09  Score=95.97  Aligned_cols=229  Identities=10%  Similarity=-0.030  Sum_probs=158.4

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEc
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNF  201 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~  201 (432)
                      ......++.+.+++...++...+     +.|.+||.. ++... +.   ....+.++++.+++.+.++   ++.|..||.
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~-----~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~   90 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKA-----NKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK   90 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTT-----TEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCCCcceeeECCCCCEEEEcCCC-----CeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence            44577888999988887777666     899999977 55433 32   3467899999999887664   478999997


Q ss_pred             CCCeeeEEEee--ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee--ccCCceeEEEEcCCCCEEEEEc
Q 014007          202 ADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSS  277 (432)
Q Consensus       202 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~  277 (432)
                      . ++.. .+..  ....+..+++.+++. ++++.  ..++.|..+|.. +....+.  .....+.+++++++|+++++..
T Consensus        91 ~-g~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~--~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  164 (300)
T 2qc5_A           91 K-GGFT-EYPLPQPDSGPYGITEGLNGD-IWFTQ--LNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTEN  164 (300)
T ss_dssp             T-SCEE-EEECSSTTCCEEEEEECSTTC-EEEEE--TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred             C-CCeE-EecCCCCCCCCccceECCCCC-EEEEc--cCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEec
Confidence            7 5543 3322  234456788887765 44443  346789999887 4444332  2356789999999999777776


Q ss_pred             CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCce
Q 014007          278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLS  357 (432)
Q Consensus       278 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (432)
                      .++. |..||. +++... +........+..++++++|.++++....+.|.+||. +++.                    
T Consensus       165 ~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~--------------------  220 (300)
T 2qc5_A          165 QNNS-IGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI--------------------  220 (300)
T ss_dssp             TTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--------------------
T ss_pred             CCCe-EEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE--------------------
Confidence            6778 999997 666543 432223356899999999987777767788999988 3331                    


Q ss_pred             eEeecccceeecceeeEEEE--ecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          358 FIKGVLPKYFSSEWSVAQFR--LVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                                      ..+.  .+...+..+++.++|+..++...++.|..|+.
T Consensus       221 ----------------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          221 ----------------SEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             ----------------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             ----------------EEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence                            1111  12345788999999986666656788888654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=6e-12  Score=113.92  Aligned_cols=169  Identities=11%  Similarity=0.113  Sum_probs=125.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe---------eEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFR---------EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      .++.+++++...+|++|+.+++.+|+++..+         ........  ... |..++|  ++..++.+ .+     +.
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f--d~~~L~v~-~~-----~~  107 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF--HGDQVLVS-TR-----NA  107 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE--ETTEEEEE-ES-----SE
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE--CCCEEEEE-cC-----Cc
Confidence            6889999999999999998899999975333         11101121  334 899999  65666666 66     99


Q ss_pred             EEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      |++||+.+........ +...+.++.+.+....++ .||.|.+||+.++....    ....+++++|+|+|  ++++   
T Consensus       108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg---  178 (388)
T 1xip_A          108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVL---  178 (388)
T ss_dssp             EEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEE---
T ss_pred             EEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEE---
Confidence            9999998776555554 777888888776653333 49999999999877643    34578899999998  3433   


Q ss_pred             CCCCcEEEEEccCCce---eee------e---ccCCceeEEEEcCCCCEEEE
Q 014007          236 LQKGQVRVEHYASKRT---KFI------M---AHDSRIACFALTQDGQLLAT  275 (432)
Q Consensus       236 ~~d~~i~i~d~~~~~~---~~~------~---~~~~~i~~~~~sp~~~~l~~  275 (432)
                      ..||.+++|+.+...+   ..+      .   +|...|.+|.|.+++.+|++
T Consensus       179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            3789999999888663   344      2   37889999999999998887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.37  E-value=2.9e-10  Score=102.75  Aligned_cols=232  Identities=8%  Similarity=-0.029  Sum_probs=150.8

Q ss_pred             eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--------cCCceEEEEEecCccEEEeC--------
Q 014007          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--------FRSEVRSVKLRRDRIIVVLE--------  193 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~d--------  193 (432)
                      .....+++++++..+++....   ..+.++||.+.+++. ..+.        +-..+.++++++++++.++|        
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~---~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQF---YQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGG---GCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CCcceEEECCCCCEEEEeCCC---CCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            567888899998888875310   003245555445543 2221        34678999999999877754        


Q ss_pred             CeEEEEEcCCCeeeEEEeecc------CCcceEEEecCCCcEEEEeecC-CCCcEEEEEccCCceeee-ecc--------
Q 014007          194 QKIFVYNFADLKLLHQIETIA------NPKGLCAVSQGVGSLVLVCPGL-QKGQVRVEHYASKRTKFI-MAH--------  257 (432)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~-~d~~i~i~d~~~~~~~~~-~~~--------  257 (432)
                      +.|.+||+.+++.+..+....      .....+++++++..++++-.+. .++.|.+||+.++....+ ..|        
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            689999999998777765421      2346789998776666653210 468899999886544332 121        


Q ss_pred             ---------------------CCceeEEEEcCCCCEEEEEcCCCceEEEEECC---CCc--------eEEEEEeCCCcCc
Q 014007          258 ---------------------DSRIACFALTQDGQLLATSSTKGTLVRIFNTL---DGT--------LLQEVRRGADRAE  305 (432)
Q Consensus       258 ---------------------~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~---~~~--------~~~~~~~~~~~~~  305 (432)
                                           ...+..|+|+|+|+.|+.+...+..|..++..   .+.        .+..+.   +...
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g---~~g~  249 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS---EKPI  249 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE---ECCS
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc---cCCC
Confidence                                 12367899999999998888777425555532   111        011111   2234


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE-ec-CCCc
Q 014007          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR-LV-EGSP  383 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v  383 (432)
                      ...++++++|.++++...++.|.+||..+++                                    +..+. .+ -..+
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~------------------------------------~~~~~~~~~~~~p  293 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITSADRA------------------------------------YKLLVTDEKLSWT  293 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEETTTTE------------------------------------EEEEEECGGGSCE
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEECCCCC------------------------------------EEEEEECCceecC
Confidence            5679999999999998899999999984443                                    11111 11 2457


Q ss_pred             eEEEEccCCCEEEEEecCCeE
Q 014007          384 YIVAFGHQKNTVVILGMDGSF  404 (432)
Q Consensus       384 ~~~~~s~~~~~l~~~~~dg~v  404 (432)
                      ..++|.++++++++.+..+.+
T Consensus       294 ~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          294 DSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             EEEEECTTSCEEEEECCGGGS
T ss_pred             CeeEECCCCcEEEEeCccccc
Confidence            899999999888887755444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.36  E-value=1.7e-09  Score=106.58  Aligned_cols=312  Identities=9%  Similarity=0.050  Sum_probs=170.4

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcc--------eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG--------IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        96 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      ++.+++++.++.|.-+|..+++.+..........        .....+.+..+ .+++. ..|     +.|..+|..+|+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~v~v~-~~d-----g~l~alD~~tG~  149 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKG-KVYVG-AWD-----GRLIALDAATGK  149 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETT-EEEEE-CTT-----SEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECC-EEEEE-cCC-----CEEEEEECCCCC
Confidence            3433344345568888988888876655431110        00112333333 33333 344     899999999999


Q ss_pred             eeEEeecC------CceEEEEEecCccEEE-e-------CCeEEEEEcCCCeeeEEEeeccCC-----------------
Q 014007          168 CIGELSFR------SEVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANP-----------------  216 (432)
Q Consensus       168 ~~~~~~~~------~~v~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~-----------------  216 (432)
                      .+..+...      ..+.+--...++.+++ .       ++.|+.||..+|+.+..+......                 
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w  229 (677)
T 1kb0_A          150 EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (677)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             EEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence            99888732      1222211122455554 2       588999999999998777543221                 


Q ss_pred             ---------------cceEEEecCCCcEEEEeecC------------C----CCcEEEEEccCCceee-ee--ccC----
Q 014007          217 ---------------KGLCAVSQGVGSLVLVCPGL------------Q----KGQVRVEHYASKRTKF-IM--AHD----  258 (432)
Q Consensus       217 ---------------~~~~~~~~~~~~~~~~~~g~------------~----d~~i~i~d~~~~~~~~-~~--~~~----  258 (432)
                                     ...++++++++.+++.+...            .    -+.|..+|.++++..- +.  .|.    
T Consensus       230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~  309 (677)
T 1kb0_A          230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY  309 (677)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence                           12467888888777654211            0    0258889998866542 22  221    


Q ss_pred             ---CceeEEEEcCCC---CEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---------Cce-----------------
Q 014007          259 ---SRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---------AEI-----------------  306 (432)
Q Consensus       259 ---~~i~~~~~sp~~---~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---------~~i-----------------  306 (432)
                         ....-+....+|   ..|+.++.+|. |+++|..+|+.+..+......         ..+                 
T Consensus       310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~-l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~  388 (677)
T 1kb0_A          310 TSTQPMILADIKIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG  388 (677)
T ss_dssp             CCCSCCEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred             ccCCCcEEEecccCCcEeeEEEEECCCCE-EEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence               122223333477   68999999999 999999999998877632100         001                 


Q ss_pred             -------EEEEECCCCCEEEEEeCCCeEEEEEecCCCCC---CCCCCCCCC--------CCCCCCCCceeEeecccceee
Q 014007          307 -------YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS---ARSEPRSTS--------DPTLPTSSLSFIKGVLPKYFS  368 (432)
Q Consensus       307 -------~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  368 (432)
                             ..++|+|++.++++...+-...++.....+.-   .........        ....+......+..+-+..-.
T Consensus       389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~  468 (677)
T 1kb0_A          389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK  468 (677)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred             cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence                   14688898888888765433333333200000   000000000        000000000111111111111


Q ss_pred             cceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          369 SEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                      ..|.+.    +...+....+..++..+++++.||.+++|+.  .+|+.+...+
T Consensus       469 ~~W~~~----~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~--~tG~~lw~~~  515 (677)
T 1kb0_A          469 AAWSVE----HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA--ATGEKLWEAP  515 (677)
T ss_dssp             EEEEEE----ESSSCCCCEEEETTTEEEEECTTSEEEEEET--TTCCEEEEEE
T ss_pred             EEeecC----CCCCCcCcceEeCCCEEEEECCCCcEEEEEC--CCCceeeeee
Confidence            223221    2234555667778889999999999999665  6677766554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.35  E-value=2.1e-11  Score=110.38  Aligned_cols=172  Identities=15%  Similarity=0.144  Sum_probs=124.8

Q ss_pred             eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-----------eeEEeecCCceEEEEEecCccEEE--eCCeEE
Q 014007          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----------CIGELSFRSEVRSVKLRRDRIIVV--LEQKIF  197 (432)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~  197 (432)
                      .+..+++++....+++++.+      .+.+|++...+           ......+.. |..++|  |+.+++  .++.|+
T Consensus        39 ~~nlLais~~~gll~a~~~~------~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS------KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT------EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC------EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEE
Confidence            56778888887777777764      67779865433           223344666 999999  766666  489999


Q ss_pred             EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc
Q 014007          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS  277 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (432)
                      +||+.+.........+...+..+.+.  ...++++   ..||.|.+||+.......   +...|+|++|||+|  ++.|.
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~--~p~~av~---~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNV--NNTLVIL---NSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEEC--SSEEEEE---ETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEE
T ss_pred             EEEchhhhccCccceeecceeeEEec--CCCEEEE---ECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEE
Confidence            99998765555555566666554443  3334433   378999999998765533   45689999999999  67899


Q ss_pred             CCCceEEEEECCCCce--EEEEEe----C---CCcCceEEEEECCCCCEEEEEe
Q 014007          278 TKGTLVRIFNTLDGTL--LQEVRR----G---ADRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       278 ~dg~~i~vwd~~~~~~--~~~~~~----~---~~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      .||. |++|+...+++  ..++..    .   .|...|.++.|.+++.++++-.
T Consensus       180 ~dg~-i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          180 KDRS-FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             TTSC-EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cCCc-EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9999 99999877775  556621    1   2457899999999999988643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.34  E-value=1.9e-09  Score=97.87  Aligned_cols=229  Identities=11%  Similarity=0.036  Sum_probs=148.7

Q ss_pred             Ec--CCCCEEEEEc--CCcEEEEEcCC--CeeEEEeecc------cCcceeEEEEeeeCCeEEEecCCCCC-CCCCCeEE
Q 014007           93 FN--QDHGCFAAGT--DHGFRIYNCDP--FREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDP-QYPLNKVM  159 (432)
Q Consensus        93 ~s--~~~~~l~~~~--~~~i~iw~~~~--~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~s~~~d~-~~~~~~v~  159 (432)
                      ++  +++++|++.+  ++.|.++|+.+  .+....+.++      ......-..+...|++. +++...++ .-.++.|.
T Consensus        89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi-~Vs~~g~~~g~~~g~v~  167 (462)
T 2ece_A           89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAI-YISALGNEEGEGPGGIL  167 (462)
T ss_dssp             CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCE-EEEEEEETTSCSCCEEE
T ss_pred             cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeE-EEEcCCCcCCCCCCeEE
Confidence            36  8899888877  45599999863  3334334441      01222445566778884 43332210 01126899


Q ss_pred             EEeCCCCceeEEee-cCC---ceEEEEEecCccEEE-e---------------------CCeEEEEEcCCCeeeEEEeec
Q 014007          160 IWDDHQSRCIGELS-FRS---EVRSVKLRRDRIIVV-L---------------------EQKIFVYNFADLKLLHQIETI  213 (432)
Q Consensus       160 iwd~~~~~~~~~~~-~~~---~v~~~~~~~~~~~~~-~---------------------d~~i~i~d~~~~~~~~~~~~~  213 (432)
                      ++|..+++.+.++. ...   --..+.|+|+++.++ +                     +++|.+||+.+++.+.++...
T Consensus       168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            99999999999887 222   244688899988777 3                     378999999999888888653


Q ss_pred             cC--CcceEEE--ecCCCcEEEEee---cCCCCcEEEEEccCCcee---ee--ec----------------cCCceeEEE
Q 014007          214 AN--PKGLCAV--SQGVGSLVLVCP---GLQKGQVRVEHYASKRTK---FI--MA----------------HDSRIACFA  265 (432)
Q Consensus       214 ~~--~~~~~~~--~~~~~~~~~~~~---g~~d~~i~i~d~~~~~~~---~~--~~----------------~~~~i~~~~  265 (432)
                      ..  ....+.|  +|+++..++++.   -..++.|.+|..+.+...   .+  ..                -......|.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence            21  1223444  999998888763   004567877665542211   11  00                024578899


Q ss_pred             EcCCCCEEEEEcCCCceEEEEECCC---CceEEEEEeCCC------------cCceEEEEECCCCCEEEEEe
Q 014007          266 LTQDGQLLATSSTKGTLVRIFNTLD---GTLLQEVRRGAD------------RAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       266 ~sp~~~~l~~~~~dg~~i~vwd~~~---~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~~~  322 (432)
                      ++|||++|.++......|.+||+.+   .+.+..+..+..            ......++++|||++|+++.
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999999988776433399999863   456666664311            01358899999999999887

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.33  E-value=3e-09  Score=105.00  Aligned_cols=307  Identities=11%  Similarity=0.056  Sum_probs=166.5

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcce-------e-EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI-------G-VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~-------~-v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      +..|++++ ++.|.-+|..+++.............       . ...+.... +..++ +..|     +.|+.+|..+|+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~v~v-~~~d-----g~l~AlDa~TG~  142 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWK-GKVYV-GVLD-----GRLEAIDAKTGQ  142 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEET-TEEEE-ECTT-----SEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEEC-CEEEE-EccC-----CEEEEEECCCCC
Confidence            33444444 55688899988888766544311100       0 01122333 33333 3345     899999999999


Q ss_pred             eeEEeecC------CceEEEEEecCccEEEe--------CCeEEEEEcCCCeeeEEEeecc-C-----------------
Q 014007          168 CIGELSFR------SEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIA-N-----------------  215 (432)
Q Consensus       168 ~~~~~~~~------~~v~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~-~-----------------  215 (432)
                      .+..+...      ..+.+--.-.++.+++.        ++.|+.||.++|+.+..+.... .                 
T Consensus       143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  222 (689)
T 1yiq_A          143 RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW  222 (689)
T ss_dssp             EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred             EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence            98887632      11211111125555552        5789999999999887765311 0                 


Q ss_pred             -------------CcceEEEecCCCcEEEEeecCCCC-------------------cEEEEEccCCceee-eec--cC--
Q 014007          216 -------------PKGLCAVSQGVGSLVLVCPGLQKG-------------------QVRVEHYASKRTKF-IMA--HD--  258 (432)
Q Consensus       216 -------------~~~~~~~~~~~~~~~~~~~g~~d~-------------------~i~i~d~~~~~~~~-~~~--~~--  258 (432)
                                   ....++++++.+.+++.+   .++                   .|..+|.++++..- +..  |.  
T Consensus       223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~---~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~w  299 (689)
T 1yiq_A          223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGV---GNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW  299 (689)
T ss_dssp             CSSTHHHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             CCceeeecCCCCccccceeEcCCCCEEEEeC---CCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccc
Confidence                         112467888877766554   233                   48999999866543 322  22  


Q ss_pred             -----CceeEEEEcCCCC---EEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc-------------------------
Q 014007          259 -----SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE-------------------------  305 (432)
Q Consensus       259 -----~~i~~~~~sp~~~---~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~-------------------------  305 (432)
                           ..+.......+|+   .|+.++.+|. ++++|.++|+++....... ...                         
T Consensus       300 d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~~~~-~~w~~~~~~~~~~pi~~~~~~~~~~~~~  377 (689)
T 1yiq_A          300 DYTATQHMILAELPIDGKPRKVLMQAPKNGF-FYVIDRATGELLSAKGIVP-QSWTKGMDMKTGRPILDEENAAYWKNGK  377 (689)
T ss_dssp             CCCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSC-CSSEEEEETTTTEEEECHHHHCTTTSSS
T ss_pred             cccCCCCcEEEeeccCCcEEEEEEEECCCCe-EEEEECCCCCEeccccccc-cccccccCccCCCcccchhhccccCCCC
Confidence                 1122222223665   7889999999 9999999999986554221 000                         


Q ss_pred             -------------eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCC---CCCCC----------CCceeE
Q 014007          306 -------------IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSD---PTLPT----------SSLSFI  359 (432)
Q Consensus       306 -------------i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~----------~~~~~~  359 (432)
                                   -..++|+|+..++++...+....++..................   ...+.          .....+
T Consensus       378 ~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l  457 (689)
T 1yiq_A          378 RNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKL  457 (689)
T ss_dssp             CEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEE
T ss_pred             eeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeE
Confidence                         1126888988888887665544444333210000000000000   00000          000111


Q ss_pred             eecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          360 KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                      ..+-+..-...|.   +..+. .+....++..+.+|++++.||.|+.|+.  .+|+++.+.+
T Consensus       458 ~A~D~~tG~~~W~---~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~--~tG~~lw~~~  513 (689)
T 1yiq_A          458 IAWDPVKQQAAWE---VPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA--DTGEKLWEQP  513 (689)
T ss_dssp             EEEETTTTEEEEE---EEESS-SCCCCEEEETTTEEEEECTTSEEEEEET--TTCCEEEEEE
T ss_pred             EEEECCCCCeEeE---ccCCC-CccCccceECCCEEEEECCCCcEEEEEC--CCCccceeee
Confidence            1111111112232   22222 3344466678889999999999999654  6677776554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.33  E-value=5e-10  Score=101.24  Aligned_cols=233  Identities=9%  Similarity=-0.002  Sum_probs=154.2

Q ss_pred             CCeEEEEEcCCCCEEEEEc--CCc-EEEEEcCCCeeEEEeecc------cCcceeEEEEeeeCCeEEEecCCC-----CC
Q 014007           86 PTLLHISFNQDHGCFAAGT--DHG-FRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGP-----DP  151 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~--~~~-i~iw~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~s~~~-----d~  151 (432)
                      ..+..++++++|+++++..  +++ ++||.++.++..   .+.      ..+...+..+++++++.+++....     + 
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~-   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI---PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV-   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE---ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC-
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee---cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC-
Confidence            6789999999999988863  222 667766543322   121      124567889999998876665432     3 


Q ss_pred             CCCCCeEEEEeCCCCceeEEeecC-------CceEEEEEecC-ccEEEe------CCeEEEEEcCCCeeeEEEeecc---
Q 014007          152 QYPLNKVMIWDDHQSRCIGELSFR-------SEVRSVKLRRD-RIIVVL------EQKIFVYNFADLKLLHQIETIA---  214 (432)
Q Consensus       152 ~~~~~~v~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~-~~~~~~------d~~i~i~d~~~~~~~~~~~~~~---  214 (432)
                          +.|.+||+.+++.+..+...       ..+..++++++ +...++      ++.|.+||+.+++..+.+..+.   
T Consensus        93 ----~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~  168 (343)
T 2qe8_A           93 ----PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA  168 (343)
T ss_dssp             ----CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred             ----CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence                68999999999877776522       34689999975 444343      4589999998877655442210   


Q ss_pred             --------------------------CCcceEEEecCCCcEEEEeecCCCCcEEEEEccC---Cce------e--eeecc
Q 014007          215 --------------------------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KRT------K--FIMAH  257 (432)
Q Consensus       215 --------------------------~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~------~--~~~~~  257 (432)
                                                .....++++|+++.++++.  .....+..++...   ...      .  ...++
T Consensus       169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~  246 (343)
T 2qe8_A          169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP--MHSTSMYRIKSADLSNLQLTDAELGSKIERYSE  246 (343)
T ss_dssp             CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE--SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE
T ss_pred             ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe--CCCCeEEEEEHHHhcCCCCChhhhhcceEeccc
Confidence                                      1235689999998777654  2234555555321   100      0  12234


Q ss_pred             CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  330 (432)
                      ......++++++|.++++...++. |.+||..+++...... ...-..+.+++|.++|+++++.+..+.+.+|
T Consensus       247 ~g~pdgia~d~~G~l~va~~~~~~-V~~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          247 KPICDGISIDKDHNIYVGDLAHSA-IGVITSADRAYKLLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             CCSCSCEEECTTCCEEEEEGGGTE-EEEEETTTTEEEEEEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             CCCCceEEECCCCCEEEEccCCCe-EEEEECCCCCEEEEEE-CCceecCCeeEECCCCcEEEEeCcccccccc
Confidence            456678999999999999888898 9999975676543333 2123568999999999888777655544433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.32  E-value=3.9e-11  Score=108.30  Aligned_cols=252  Identities=6%  Similarity=-0.068  Sum_probs=160.3

Q ss_pred             cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC----------CCCCCCCCeEEEEeCCCCceeEEeecC-
Q 014007          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLNKVMIWDDHQSRCIGELSFR-  175 (432)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~~~v~iwd~~~~~~~~~~~~~-  175 (432)
                      .|.++|.++++.+  ..+..+.. .  .+.+++++..+..+.          .+     +.|.+||+.+++.+.++... 
T Consensus        47 ~vsvID~~t~~v~--~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~-----~~VsviD~~T~~vv~~I~v~~  116 (368)
T 1mda_H           47 ENWVSCAGCGVTL--GHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRT-----DYVEVFDPVTFLPIADIELPD  116 (368)
T ss_dssp             EEEEEETTTTEEE--EEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEE-----EEEEEECTTTCCEEEEEEETT
T ss_pred             eEEEEECCCCeEE--EEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCC-----CEEEEEECCCCCEEEEEECCC
Confidence            6889999888876  34432332 3  688999886665553          34     78999999999999998732 


Q ss_pred             -------CceEEEEEecCccEEEe-----CCeEEE--EEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007          176 -------SEVRSVKLRRDRIIVVL-----EQKIFV--YNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       176 -------~~v~~~~~~~~~~~~~~-----d~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (432)
                             .....++++|||++++.     ++.|.+  +|+.+   +..+... .   +..+.|+++..+++.  +.|+.+
T Consensus       117 ~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~---~~~~~p~g~~~~~~~--~~dg~~  187 (368)
T 1mda_H          117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S---CFHIHPGAAATHYLG--SCPASL  187 (368)
T ss_dssp             SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S---CCCCEEEETTEEECC--CCTTSC
T ss_pred             ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C---ceEEccCCCeEEEEE--cCCCCE
Confidence                   34678999999987772     356888  88876   4555321 1   233567887776644  368888


Q ss_pred             EEEEccC-----Cceee-----eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc--eEEEEEeCC--------
Q 014007          242 RVEHYAS-----KRTKF-----IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LLQEVRRGA--------  301 (432)
Q Consensus       242 ~i~d~~~-----~~~~~-----~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~--~~~~~~~~~--------  301 (432)
                      .+.|+..     +.+..     +.....+.   . .+++..++..+. +. |.+.|+.+..  .+..+....        
T Consensus       188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~-V~viD~~~~~~~v~~~~~~~~~~~~~~~~  261 (368)
T 1mda_H          188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SS-ILQGDIPAAGATMKAAIDGNESGRKADNF  261 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SC-CEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred             EEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CE-EEEEECCCCcceEEEEEEecccccccccc
Confidence            8888876     22211     11112233   3 555666656566 88 9999986543  222221100        


Q ss_pred             CcCceEEEEECCCCCEEEEEeC---------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee
Q 014007          302 DRAEIYSLAFSSNAQWLAVSSD---------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS  372 (432)
Q Consensus       302 ~~~~i~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (432)
                      .......++|+||++.++.+..         ++.+.++|+.+.+.+..                                
T Consensus       262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~--------------------------------  309 (368)
T 1mda_H          262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP--------------------------------  309 (368)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC--------------------------------
T ss_pred             ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE--------------------------------
Confidence            0011122689999998887543         23567999999874321                                


Q ss_pred             eEEEEecCCCceEEEEccCCCEE-EEEe-cCCeEEEEEecCCCCCcceEee
Q 014007          373 VAQFRLVEGSPYIVAFGHQKNTV-VILG-MDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       373 ~~~~~~~~~~v~~~~~s~~~~~l-~~~~-~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                         +.... ....++|+|||+++ ++.. .++.|.++|+  .+++.+.+++
T Consensus       310 ---i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~--~t~kvv~~I~  354 (368)
T 1mda_H          310 ---ISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDA--ASDQDQSSVE  354 (368)
T ss_dssp             ---CEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEES--SSCEEEEECC
T ss_pred             ---EECCC-CcceEEECCCCCEEEEEccCCCCeEEEEEC--CCCcEEEEEE
Confidence               11221 36789999999854 4555 4899999765  5555555544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.29  E-value=3.2e-09  Score=90.62  Aligned_cols=218  Identities=9%  Similarity=-0.003  Sum_probs=142.5

Q ss_pred             CceeEEeecCCc--eEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC
Q 014007          166 SRCIGELSFRSE--VRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (432)
Q Consensus       166 ~~~~~~~~~~~~--v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (432)
                      .+.+.++.|...  ...+.|++++.+..+     ++.|+++|+.+++.+..+....... ...+..+++.++++.  ..+
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f-geGi~~~g~~lyv~t--~~~   85 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF-GEGLTLLNEKLYQVV--WLK   85 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC-EEEEEEETTEEEEEE--TTC
T ss_pred             ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc-eEEEEEeCCEEEEEE--ecC
Confidence            356677776643  589999998765554     3689999999999998876433322 334555677777664  478


Q ss_pred             CcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---CceEEEEECCC
Q 014007          239 GQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSN  314 (432)
Q Consensus       239 ~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~  314 (432)
                      +.+.++|..+.++ ..+......  ...+++||+.|+++..++. |.++|..+.+.+..+..+...   ..++.+.|. +
T Consensus        86 ~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~-l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d  161 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSI-LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N  161 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCe-EEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence            9999999988544 344321121  2345668888887777788 999999999999888753221   136788888 7


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCE
Q 014007          315 AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT  394 (432)
Q Consensus       315 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  394 (432)
                      |+.++....++.|.+.|..+++.+..++.                .+..+......      .......+.++|+|+++.
T Consensus       162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~----------------~g~~~~~~~~~------~~~~~v~nGIa~~~~~~~  219 (266)
T 2iwa_A          162 GEVWANIWQTDCIARISAKDGTLLGWILL----------------PNLRKKLIDEG------FRDIDVLNGIAWDQENKR  219 (266)
T ss_dssp             TEEEEEETTSSEEEEEETTTCCEEEEEEC----------------HHHHHHHHHTT------CTTCCCEEEEEEETTTTE
T ss_pred             CEEEEecCCCCeEEEEECCCCcEEEEEEC----------------CCccccccccc------ccccCceEEEEEcCCCCE
Confidence            76665655788999999999883321100                00000000000      000134689999999876


Q ss_pred             EEE-EecCCeEEEEEecCC
Q 014007          395 VVI-LGMDGSFYRCQFDPV  412 (432)
Q Consensus       395 l~~-~~~dg~v~iw~~~~~  412 (432)
                      |++ +...+.+++-++...
T Consensus       220 lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          220 IFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTCSEEEEEEEEEC
T ss_pred             EEEECCCCCeEEEEEEecc
Confidence            555 556888988777654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.27  E-value=1.6e-08  Score=92.62  Aligned_cols=221  Identities=10%  Similarity=0.091  Sum_probs=133.1

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCc------ceeE-EEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGG------GIGV-VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (432)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~------~~~v-~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~  168 (432)
                      +..+.+++ ++.|..||.++++......+....      ...+ .......+..++.+  .+     +.|..+|..+|+.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~~-----g~l~a~d~~tG~~  125 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGS--EK-----AQVYALNTSDGTV  125 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEE--TT-----SEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEc--CC-----CEEEEEECCCCCE
Confidence            44555555 556999999888877655553110      1222 22333333333333  34     8999999999999


Q ss_pred             eEEeecCCceEEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEeeccCCc-----ceEEEecCCCcEEEEeecCCCCcE
Q 014007          169 IGELSFRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       169 ~~~~~~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~d~~i  241 (432)
                      +..+.....+.......++.+++ . ++.|..+|..+++.+..........     ....+.  +..+++   +..++.+
T Consensus       126 ~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~---g~~~g~l  200 (376)
T 3q7m_A          126 AWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVV---GGDNGRV  200 (376)
T ss_dssp             EEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEE---CCTTTEE
T ss_pred             EEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEE---EcCCCEE
Confidence            88877443332221223455444 3 7899999999999887765432211     122222  333333   3468899


Q ss_pred             EEEEccCCceeeeeccCCc--------eeEEEEcC--CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007          242 RVEHYASKRTKFIMAHDSR--------IACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (432)
Q Consensus       242 ~i~d~~~~~~~~~~~~~~~--------i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~  311 (432)
                      ..+|..++...-......+        +..+...|  .+..++.++.++. |..+|.++++.+.....    .....+..
T Consensus       201 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG~~~w~~~~----~~~~~~~~  275 (376)
T 3q7m_A          201 SAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSGQIMWKREL----GSVNDFIV  275 (376)
T ss_dssp             EEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTCCEEEEECC----CCEEEEEE
T ss_pred             EEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCCcEEeeccC----CCCCCceE
Confidence            9999987655432211110        00011111  3456778888898 99999999998876652    23444444


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          312 SSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       312 s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                        ++..|+.++.++.|..+|..+++
T Consensus       276 --~~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          276 --DGNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             --ETTEEEEEETTCCEEEEETTTCC
T ss_pred             --ECCEEEEEcCCCeEEEEECCCCc
Confidence              45677788889999999999887

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.26  E-value=3.9e-11  Score=108.34  Aligned_cols=227  Identities=8%  Similarity=-0.012  Sum_probs=146.3

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecccCc----ceeEEEEeeeCCeEEEecCCC--CCC
Q 014007           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGGP--DPQ  152 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~s~~~--d~~  152 (432)
                      .+.++|||++|.++.           ++.|.+||..+++......+.++.    ...-..+.++|++..++.+..  .  
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~--  146 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS--  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS--
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC--
Confidence            699999999888775           344999999998876433331000    123456788999876665432  3  


Q ss_pred             CCCCeEEE--EeCCCCceeEEeecCCceEEEEEecCc--cEEE--eCCeEEEEEcCC-----CeeeE----EEeeccCCc
Q 014007          153 YPLNKVMI--WDDHQSRCIGELSFRSEVRSVKLRRDR--IIVV--LEQKIFVYNFAD-----LKLLH----QIETIANPK  217 (432)
Q Consensus       153 ~~~~~v~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~-----~~~~~----~~~~~~~~~  217 (432)
                         ..|.+  +|+.+   +.++...+.   ..+.|++  .+++  .|+.+.+.|+.+     ++...    .+.....+.
T Consensus       147 ---~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~  217 (368)
T 1mda_H          147 ---AAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA  217 (368)
T ss_dssp             ---CEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE
T ss_pred             ---CeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc
Confidence               67888  99877   455553222   1233444  3333  278888888876     44321    111122222


Q ss_pred             ceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee---ee-------cc---CCceeEEEEcCCCCEEEEEcC-C----
Q 014007          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IM-------AH---DSRIACFALTQDGQLLATSST-K----  279 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~---~~-------~~---~~~i~~~~~sp~~~~l~~~~~-d----  279 (432)
                         . .+++..+++++   . +.+.+.|..+.....   +.       .+   ......++++|+++.++++.. .    
T Consensus       218 ---~-~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~  289 (368)
T 1mda_H          218 ---Q-ANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC  289 (368)
T ss_dssp             ---E-ETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred             ---c-cccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcc
Confidence               3 67777666554   4 899999986532211   11       01   112223789999998887643 2    


Q ss_pred             ----CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC-EEEEEe-CCCeEEEEEecCCCCCC
Q 014007          280 ----GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       280 ----g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~  339 (432)
                          +. +.++|+.+++.+..+..+   .....|+|+|||+ .+++.. .++.|.++|+.+++.++
T Consensus       290 ~~~~~~-~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~  351 (368)
T 1mda_H          290 LAAAEN-TSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             TSCEEE-EEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             cccCCC-EEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence                35 679999999999988854   3689999999998 455555 59999999999988543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.26  E-value=3.5e-10  Score=106.32  Aligned_cols=236  Identities=11%  Similarity=0.055  Sum_probs=159.0

Q ss_pred             CCCCEEEEEc-CCc-EEEEEcCCCeeEEEeecccCcceeEEEEee-e-CCeEEEecCCCCC-------------CCCCCe
Q 014007           95 QDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF-R-CNILALVGGGPDP-------------QYPLNK  157 (432)
Q Consensus        95 ~~~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~s~~~d~-------------~~~~~~  157 (432)
                      +||++|.+.. ++. |.+.|+++.+......+.  .......+++ . |++.+++.++...             .-..+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip--~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC--CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            4888887776 444 999999998876444554  3344666666 3 6766666553110             001268


Q ss_pred             EEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---C--------------------------------------CeE
Q 014007          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---E--------------------------------------QKI  196 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d--------------------------------------~~i  196 (432)
                      +.+.|..+.+.+.++...+....++++|+|++++.   +                                      +.|
T Consensus       177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            99999999999998885456778889999887762   1                                      137


Q ss_pred             EEEEcCC--Cee-eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc------------eeeeeccCCce
Q 014007          197 FVYNFAD--LKL-LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR------------TKFIMAHDSRI  261 (432)
Q Consensus       197 ~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~------------~~~~~~~~~~i  261 (432)
                      .+.|.++  ++. +..+..... ...+.++|||++++++  +..+..|.++|+.+..            +.....-....
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg~~-PhGv~~sPDGk~v~V~--~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP  333 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHLCVA--GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  333 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEESS-CCCEEECTTSSEEEEE--CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred             EEEeCcccCCceeEEEEecCCC-ceEEEEcCCCCEEEEe--CCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence            7777776  444 455554333 3479999999987654  4578999999998642            11112234567


Q ss_pred             eEEEEcCCCCEEEEEcCCCceEEEEECCC----------CceEEEEEeCCCcC---ceEEEEECCCCCEEEEEeC---CC
Q 014007          262 ACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTLLQEVRRGADRA---EIYSLAFSSNAQWLAVSSD---KG  325 (432)
Q Consensus       262 ~~~~~sp~~~~l~~~~~dg~~i~vwd~~~----------~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~---dg  325 (432)
                      ..++|+|+|...++...|+. |.+||+.+          .+.+.++..+...+   .-..+.++|||++|++...   |+
T Consensus       334 ~h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr  412 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR  412 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred             ceEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence            89999999955556777888 99999977          56777887542111   1122356899999998862   43


Q ss_pred             e----------EEEEEecCCC
Q 014007          326 T----------VHVFNLKVNS  336 (432)
Q Consensus       326 ~----------i~iwd~~~~~  336 (432)
                      .          -.++|+..++
T Consensus       413 ~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          413 FLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             SCCCCSSCCEEEEEEECSSSS
T ss_pred             cccCCCCCCCcceEEEcCCCc
Confidence            2          1889996555

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.25  E-value=3.6e-08  Score=85.55  Aligned_cols=228  Identities=7%  Similarity=-0.054  Sum_probs=140.5

Q ss_pred             CCEEEEEcCCcEEEEEcCCCeeEE---EeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCceeEEe
Q 014007           97 HGCFAAGTDHGFRIYNCDPFREIF---RRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (432)
Q Consensus        97 ~~~l~~~~~~~i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~  172 (432)
                      |.+|..+..+.|+.++++......   ...+. ........++++++ +.++++....     +.|..++...+.....+
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~~~   74 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTII   74 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEE
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCC-----CEEEEEecCCCCcEEEE
Confidence            345666665568888887543210   01111 12345678888874 4555555555     89999998765443333


Q ss_pred             e-cCCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007          173 S-FRSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (432)
Q Consensus       173 ~-~~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  247 (432)
                      . ......++++++++. +.++   .+.|.++++........+.........+++++++..++++..+...+.|..++++
T Consensus        75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            3 235788999998644 4333   5789999986432222222222344678999988888776533225788888887


Q ss_pred             CCceeeee-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE-eCC
Q 014007          248 SKRTKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS-SDK  324 (432)
Q Consensus       248 ~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d  324 (432)
                      ......+. ..-.....+++++++..|+.+. ..+. |.++|.........+...   .....++..  +..|+.+ ...
T Consensus       155 g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~  228 (267)
T 1npe_A          155 GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKT  228 (267)
T ss_dssp             SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTT
T ss_pred             CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCC
Confidence            75444432 2334678999999876665544 4566 999998755443333321   334667764  4445444 467


Q ss_pred             CeEEEEEecCCC
Q 014007          325 GTVHVFNLKVNS  336 (432)
Q Consensus       325 g~i~iwd~~~~~  336 (432)
                      +.|.++|..+++
T Consensus       229 ~~v~~~d~~~g~  240 (267)
T 1npe_A          229 NSVIAMDLAISK  240 (267)
T ss_dssp             TEEEEEETTTTE
T ss_pred             CeEEEEeCCCCC
Confidence            899999998876

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.25  E-value=2.2e-08  Score=85.46  Aligned_cols=195  Identities=11%  Similarity=0.041  Sum_probs=138.5

Q ss_pred             eeEEEEeeeCCeEEEecCCC--CCCCCCCeEEEEeCCCCceeEEeecCC--ceEEEEEecCccEEEe--CCeEEEEEcCC
Q 014007          130 IGVVEMLFRCNILALVGGGP--DPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVVL--EQKIFVYNFAD  203 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~--d~~~~~~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~--d~~i~i~d~~~  203 (432)
                      .....+.|++++.++++.+.  +     +.|+++|+.+++.+..+....  ....+++..+..+++.  ++.+.++|..+
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~~~-----s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLYGR-----SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECSTTT-----CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTT
T ss_pred             CCcccEEEeCCCeEEEECCCCCC-----CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCC
Confidence            34578889886666665432  3     799999999999999887333  2345666644444443  88999999999


Q ss_pred             CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeec--cC---CceeEEEEcCCCCEEEEEc
Q 014007          204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA--HD---SRIACFALTQDGQLLATSS  277 (432)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~--~~---~~i~~~~~sp~~~~l~~~~  277 (432)
                      ++.+.++... .+ ....++++++.++++.   .++.|.++|..+.+ ...+.-  +.   ..++.+.|. +|...+...
T Consensus        96 ~~v~~~i~~g-~~-~g~glt~Dg~~l~vs~---gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~  169 (266)
T 2iwa_A           96 LSNIKNFTHQ-MK-DGWGLATDGKILYGSD---GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW  169 (266)
T ss_dssp             TEEEEEEECC-SS-SCCEEEECSSSEEEEC---SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             CcEEEEEECC-CC-CeEEEEECCCEEEEEC---CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence            9999988654 12 2466888998887543   36899999998844 333331  11   236688887 776555555


Q ss_pred             CCCceEEEEECCCCceEEEEEeCC-----------CcCceEEEEECCCCCEEE-EEeCCCeEEEEEecCCC
Q 014007          278 TKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLA-VSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       278 ~dg~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~  336 (432)
                      .++. |.+.|..+++.+..+....           .......|+|+|+++.|+ ++...+.|++.++....
T Consensus       170 ~~~~-V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          170 QTDC-IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             TSSE-EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             CCCe-EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            6677 9999999999999998521           013568999999987555 55578899999998754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.21  E-value=1.4e-08  Score=99.92  Aligned_cols=231  Identities=8%  Similarity=0.045  Sum_probs=147.0

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEeecc-cCc-ceeEEE-EeeeCCeEEEecCC-----CCCCCCCCeEEEEeCCCCc
Q 014007           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFE-RGG-GIGVVE-MLFRCNILALVGGG-----PDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~-~~~-~~~v~~-~~~~~~~~~~~s~~-----~d~~~~~~~v~iwd~~~~~  167 (432)
                      +..|++++ ++.|..+|..+++........ ... ...+.. .... ++..++...     .+     +.|+.||..+|+
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~-----g~v~a~D~~tG~  201 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVR-----GYITAYDAETGE  201 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCB-----CEEEEEETTTCC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCC-----CEEEEEECCCCc
Confidence            44566665 556999999988887655442 000 011111 1112 344444433     24     899999999999


Q ss_pred             eeEEeec-CCc--------------------------------eEEEEEecCccEEEe---CC-----------------
Q 014007          168 CIGELSF-RSE--------------------------------VRSVKLRRDRIIVVL---EQ-----------------  194 (432)
Q Consensus       168 ~~~~~~~-~~~--------------------------------v~~~~~~~~~~~~~~---d~-----------------  194 (432)
                      .+..+.. ...                                ...+++++++..++.   ++                 
T Consensus       202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~  281 (677)
T 1kb0_A          202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY  281 (677)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence            9888762 111                                124678887666552   22                 


Q ss_pred             --eEEEEEcCCCeeeEEEeeccCC---------cceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee-eecc-----
Q 014007          195 --KIFVYNFADLKLLHQIETIANP---------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAH-----  257 (432)
Q Consensus       195 --~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~-----  257 (432)
                        .|..+|..+|+.+..++.....         ...+....+|+..-++..++.+|.++++|..++++.. +...     
T Consensus       282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~  361 (677)
T 1kb0_A          282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA  361 (677)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence              4999999999998877653221         1123333466321112234589999999998865432 1100     


Q ss_pred             ------CCce------------------------eEEEEcCCCCEEEEEcCC----------------------------
Q 014007          258 ------DSRI------------------------ACFALTQDGQLLATSSTK----------------------------  279 (432)
Q Consensus       258 ------~~~i------------------------~~~~~sp~~~~l~~~~~d----------------------------  279 (432)
                            ..++                        ..++|+|++.++++...+                            
T Consensus       362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  441 (677)
T 1kb0_A          362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN  441 (677)
T ss_dssp             EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred             cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence                  0011                        257889988888775431                            


Q ss_pred             ---------------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          280 ---------------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       280 ---------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                                     +. |..||+.+++.+..+..+   .++....+..++.+++.++.||.+++||.++++.
T Consensus       442 ~g~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          442 TAKFFNAEPPKSKPFGR-LLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             CCEEECSSCCCSCCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccccccCCCCCccE-EEEEeCCCCcEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence                           67 999999999999888743   3445556667888888999999999999999984

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.21  E-value=5.5e-09  Score=98.25  Aligned_cols=185  Identities=11%  Similarity=0.031  Sum_probs=131.0

Q ss_pred             CeEEEecC-CCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEE-e-cCccEEEeC---------------------
Q 014007          140 NILALVGG-GPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKL-R-RDRIIVVLE---------------------  193 (432)
Q Consensus       140 ~~~~~~s~-~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~-~-~~~~~~~~d---------------------  193 (432)
                      ++.++... ..+     +.|.+.|+.+.++.+.+.  ....+..+++ + |++.+++..                     
T Consensus       100 DG~~lfVnd~~~-----~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A          100 DGRFLFMNDKAN-----TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEETTT-----TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             CCCEEEEEcCCC-----CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence            55554444 344     789999999999888555  4567889888 4 888777632                     


Q ss_pred             CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC-----------------------------------
Q 014007          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-----------------------------------  238 (432)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-----------------------------------  238 (432)
                      +.+.++|..+.+...++....+ -..++++|+|+.+++.+..+..                                   
T Consensus       175 ~~vtvID~~t~~v~~qI~Vgg~-pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          175 NVFTAVDADKWEVAWQVLVSGN-LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEEETTTTEEEEEEEESSC-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             ceEEEEECCCCeEEEEEEeCCC-ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            3799999999999888876553 4578899999988776633211                                   


Q ss_pred             CcEEEEEccC--Cce-eeeeccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCCc------------eEEEEEeCCC
Q 014007          239 GQVRVEHYAS--KRT-KFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGT------------LLQEVRRGAD  302 (432)
Q Consensus       239 ~~i~i~d~~~--~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~~------------~~~~~~~~~~  302 (432)
                      +.|.+.|.++  +.. .....-.....++.++|||+++++++. +.+ |.++|+.+.+            ....+..   
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~~~~~~~~l~~~~~v~~~v~v---  329 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRFDAVFYENADPRSAVVAEPEL---  329 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGHHHHHHSCCCGGGGEEECCBC---
T ss_pred             CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCe-EEEEECcccccccccccCcccceEEEcCC---
Confidence            2466677665  222 112222345678999999998877664 556 9999998653            3444442   


Q ss_pred             cCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       303 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      ......++|+++|....+.-.|+.|.+||+.+
T Consensus       330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            25689999999994444555899999999987

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.20  E-value=1.8e-09  Score=96.90  Aligned_cols=215  Identities=13%  Similarity=0.047  Sum_probs=137.6

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE
Q 014007           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (432)
Q Consensus        91 ~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~  170 (432)
                      ..+..+|.+.+.+.+++|..|| .+++......+   ....+..+....++.+.++..       + |..+|. +++.+.
T Consensus        25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~---~~~~~~~~~~~~~g~l~v~t~-------~-l~~~d~-~g~~~~   91 (330)
T 3hxj_A           25 PILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKS---GEIIECRPSIGKDGTIYFGSD-------K-VYAINP-DGTEKW   91 (330)
T ss_dssp             CEECTTSCEECSSTTTTTEEEC-TTSCEEESSCG---GGEEEECCEETTTTEECCSSC-------E-EEEECC-CGGGGG
T ss_pred             ceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEec---CCCcccceEEecCCcEEEecC-------c-EEEECC-CCcEEE
Confidence            4555666655444477799999 66665533222   344456667777777666543       6 888985 676655


Q ss_pred             Eeec-CCceEEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007          171 ELSF-RSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (432)
Q Consensus       171 ~~~~-~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  247 (432)
                      .+.. ........+. ++.+.+ + ++.|..+|.. ++...........+..+...+++. ++++   +.++.|..+|..
T Consensus        92 ~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vg---t~~~~l~~~d~~  165 (330)
T 3hxj_A           92 RFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVG---SNDNYLYAINPD  165 (330)
T ss_dssp             GSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEE---CTTSEEEEECTT
T ss_pred             EEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEE---cCCCEEEEECCC
Confidence            5542 2222333344 555444 4 7899999987 777666655555555666666654 4443   357899999988


Q ss_pred             CCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeE
Q 014007          248 SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (432)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  327 (432)
                      ......+......+.++.+.+++.+++ ++  +. |..+| .+++.+..+..  ....+.++...++|.+ ..++.++.|
T Consensus       166 g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~-l~~~d-~~g~~~~~~~~--~~~~~~~~~~~~~g~l-~v~t~~~gl  237 (330)
T 3hxj_A          166 GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DK-VYAIN-PDGTEKWNFYA--GYWTVTRPAISEDGTI-YVTSLDGHL  237 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SS-EEEEC-TTSCEEEEECC--SSCCCSCCEECTTSCE-EEEETTTEE
T ss_pred             CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CE-EEEEC-CCCcEEEEEcc--CCcceeceEECCCCeE-EEEcCCCeE
Confidence            433344544556677888888887554 44  66 99999 78887766653  2356788888888764 456667888


Q ss_pred             EEEEe
Q 014007          328 HVFNL  332 (432)
Q Consensus       328 ~iwd~  332 (432)
                      ..+|.
T Consensus       238 ~~~~~  242 (330)
T 3hxj_A          238 YAINP  242 (330)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            88874

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.20  E-value=3.7e-08  Score=90.12  Aligned_cols=217  Identities=12%  Similarity=0.075  Sum_probs=133.0

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (432)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~  175 (432)
                      +..+.+++ ++.|..+|..+++......+. ...  ....... ++..++. ..+     +.|..+|..+|+.+..+...
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~--~~~p~~~-~~~v~v~-~~~-----g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVA-GEA--LSRPVVS-DGLVLIH-TSN-----GQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECS-SCC--CSCCEEE-TTEEEEE-CTT-----SEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCC-Cce--EcCCEEE-CCEEEEE-cCC-----CeEEEEECCCCcEEEEEeCC
Confidence            34455554 566999999988877655543 111  1111222 3344433 334     89999999999998887743


Q ss_pred             Cce------EEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEeeccCC----------c-ceEEEecCCCcEEEEeecC
Q 014007          176 SEV------RSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIETIANP----------K-GLCAVSQGVGSLVLVCPGL  236 (432)
Q Consensus       176 ~~v------~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~g~  236 (432)
                      ..+      ...... ++.+++ . ++.|..+|..+++.+.........          + ....+  .+..+++.   +
T Consensus       173 ~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~---~  246 (376)
T 3q7m_A          173 MPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFAL---A  246 (376)
T ss_dssp             C-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEE---C
T ss_pred             CCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEE---e
Confidence            333      222233 444444 3 789999999999887766532110          1 11111  23444443   3


Q ss_pred             CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC
Q 014007          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (432)
Q Consensus       237 ~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  316 (432)
                      .++.+..+|..+++..-... ......+..  ++..|+.++.++. |..+|..+++.+...... ....+.....  .+.
T Consensus       247 ~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~tG~~~w~~~~~-~~~~~~~~~~--~~~  319 (376)
T 3q7m_A          247 YNGNLTALDLRSGQIMWKRE-LGSVNDFIV--DGNRIYLVDQNDR-VMALTIDGGVTLWTQSDL-LHRLLTSPVL--YNG  319 (376)
T ss_dssp             TTSCEEEEETTTCCEEEEEC-CCCEEEEEE--ETTEEEEEETTCC-EEEEETTTCCEEEEECTT-TTSCCCCCEE--ETT
T ss_pred             cCcEEEEEECCCCcEEeecc-CCCCCCceE--ECCEEEEEcCCCe-EEEEECCCCcEEEeeccc-CCCcccCCEE--ECC
Confidence            68899999998866543222 223444444  4567888888888 999999999987766521 1122222333  346


Q ss_pred             EEEEEeCCCeEEEEEecCCC
Q 014007          317 WLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       317 ~l~~~~~dg~i~iwd~~~~~  336 (432)
                      .|+.++.+|.|+++|..+++
T Consensus       320 ~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          320 NLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCC
T ss_pred             EEEEEeCCCeEEEEECCCCc
Confidence            78888899999999999987

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.17  E-value=2e-08  Score=99.06  Aligned_cols=236  Identities=11%  Similarity=0.052  Sum_probs=144.5

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEeecc-cCc-ceeEEE-EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe
Q 014007           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFE-RGG-GIGVVE-MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (432)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~-~~~-~~~v~~-~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~  172 (432)
                      +..|++++ ++.|..+|..+++........ ... ...+.. .... ++..++..+....-.++.|+.||..+|+.+..+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            34566666 556999999998887654432 000 011110 1111 445555432100001289999999999998877


Q ss_pred             ec-C-C------------------------------ceEEEEEecCccEEEe---CC-------------------eEEE
Q 014007          173 SF-R-S------------------------------EVRSVKLRRDRIIVVL---EQ-------------------KIFV  198 (432)
Q Consensus       173 ~~-~-~------------------------------~v~~~~~~~~~~~~~~---d~-------------------~i~i  198 (432)
                      .. . .                              ....+++++++.+++.   ++                   .|..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            52 1 0                              0125678886655552   33                   3999


Q ss_pred             EEcCCCeeeEEEeeccCC---------cceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec--c----------
Q 014007          199 YNFADLKLLHQIETIANP---------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--H----------  257 (432)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~----------  257 (432)
                      +|.++|+.+..++.....         .....+..+|+..-++..++.+|.++++|.+++++..-..  .          
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            999999998877653221         1112223344321112235689999999998866531000  0          


Q ss_pred             -----------------CC-----------ceeEEEEcCCCCEEEEEcC-------------------------------
Q 014007          258 -----------------DS-----------RIACFALTQDGQLLATSST-------------------------------  278 (432)
Q Consensus       258 -----------------~~-----------~i~~~~~sp~~~~l~~~~~-------------------------------  278 (432)
                                       ..           .-..++|+|+..++++...                               
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  439 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM  439 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence                             00           0123788888887776532                               


Q ss_pred             --------------CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          279 --------------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       279 --------------dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                                    +|. |+.||+.+++.+..+..+   ..+....+...+.+++.++.||.|+.||.++++.
T Consensus       440 p~~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          440 PEGAEGLLEMAKSWSGK-LIAWDPVKQQAAWEVPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             CSSHHHHHHHHTTCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CcccccCCCCCCCccee-EEEEECCCCCeEeEccCC---CCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence                          377 999999999999888753   3333445566788899999999999999999984

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.15  E-value=6.7e-09  Score=93.08  Aligned_cols=262  Identities=14%  Similarity=0.057  Sum_probs=161.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~  165 (432)
                      ..+.++...++|.++ +++.+ |..||. +++.......   ........... ++...++. .+     +.|..+|.. 
T Consensus        60 ~~~~~~~~~~~g~l~-v~t~~-l~~~d~-~g~~~~~~~~---~~~~~~~~~~~-~~~l~v~t-~~-----~~l~~~d~~-  125 (330)
T 3hxj_A           60 IIECRPSIGKDGTIY-FGSDK-VYAINP-DGTEKWRFDT---KKAIVSDFTIF-EDILYVTS-MD-----GHLYAINTD-  125 (330)
T ss_dssp             EEEECCEETTTTEEC-CSSCE-EEEECC-CGGGGGGSCC--------CCEEEE-TTEEEEEC-TT-----SEEEEECTT-
T ss_pred             CcccceEEecCCcEE-EecCc-EEEECC-CCcEEEEEEC---CCCcccCceEE-CCEEEEEe-cC-----CEEEEEcCC-
Confidence            345677777777644 45544 777774 3332211111   11111112223 44444433 33     889999988 


Q ss_pred             CceeEEee-cCCceEEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007          166 SRCIGELS-FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (432)
Q Consensus       166 ~~~~~~~~-~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (432)
                      ++.+..+. ....+.++...+++.+.+ . ++.|..+|.. ++.+..+......+..+.+..++. ++++   +  +.|.
T Consensus       126 g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~---t--~~l~  198 (330)
T 3hxj_A          126 GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFG---S--DKVY  198 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEE---S--SSEE
T ss_pred             CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEE---e--CEEE
Confidence            77776666 445566777777777666 3 5899999988 877777665555566666666654 3332   2  7888


Q ss_pred             EEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007          243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       243 i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      .+|...............+.++...++|. |..++.++. |..+| .+++.+..+...  ...+..+.+.+++. |..++
T Consensus       199 ~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~g-l~~~~-~~g~~~~~~~~~--~~~~~~~~~~~~g~-l~v~t  272 (330)
T 3hxj_A          199 AINPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGH-LYAIN-PDGTEKWRFKTG--KRIESSPVIGNTDT-IYFGS  272 (330)
T ss_dssp             EECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTE-EEEEC-TTSCEEEEEECS--SCCCSCCEECTTSC-EEEEC
T ss_pred             EECCCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCe-EEEEC-CCCCEeEEeeCC--CCccccceEcCCCe-EEEec
Confidence            99933344444444556688888888886 555666777 88887 567777666642  23344566665664 56777


Q ss_pred             CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCC
Q 014007          323 DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG  402 (432)
Q Consensus       323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  402 (432)
                      .+|.|..+|. +++.                                   +..+......+.++...++|+ |..++.+|
T Consensus       273 ~~ggl~~~d~-~g~~-----------------------------------~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G  315 (330)
T 3hxj_A          273 YDGHLYAINP-DGTE-----------------------------------KWNFETGSWIIATPVIDENGT-IYFGTRNG  315 (330)
T ss_dssp             TTCEEEEECT-TSCE-----------------------------------EEEEECSSCCCSCCEECTTCC-EEEECTTS
T ss_pred             CCCCEEEECC-CCcE-----------------------------------EEEEEcCCccccceEEcCCCE-EEEEcCCC
Confidence            8888999985 4441                                   112333445577777777765 56699999


Q ss_pred             eEEEEEecC
Q 014007          403 SFYRCQFDP  411 (432)
Q Consensus       403 ~v~iw~~~~  411 (432)
                      .+++...+.
T Consensus       316 ~~~~~~~~~  324 (330)
T 3hxj_A          316 KFYALFNLE  324 (330)
T ss_dssp             CEEEEEC--
T ss_pred             eEEEEeccc
Confidence            999866543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.11  E-value=2.1e-08  Score=84.46  Aligned_cols=202  Identities=14%  Similarity=0.100  Sum_probs=132.6

Q ss_pred             ceeEEeecCCce--EEEEEecCccEEEe---CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007          167 RCIGELSFRSEV--RSVKLRRDRIIVVL---EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (432)
Q Consensus       167 ~~~~~~~~~~~v--~~~~~~~~~~~~~~---d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  239 (432)
                      +.+.++.|....  ..+.|+ ++.+..+   +|  .|+++|+.+++.+..+.... ......+.++++.+++++  ..++
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~lt--w~~~  107 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLT--WKNG  107 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEE--SSSS
T ss_pred             EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEE--eeCC
Confidence            456777765544  789998 5554443   33  89999999999998886543 333445666778887764  4689


Q ss_pred             cEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---CceEEEEECCCC
Q 014007          240 QVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSNA  315 (432)
Q Consensus       240 ~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~~  315 (432)
                      .+.+||..+.++ .++.. ..  ....++++++.|+.+..++. |.++|..+.+.+..+......   ..++.+.|. +|
T Consensus       108 ~v~v~D~~t~~~~~ti~~-~~--eG~glt~dg~~L~~SdGs~~-i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G  182 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNY-DG--EGWGLTHNDQYLIMSDGTPV-LRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG  182 (262)
T ss_dssp             EEEEEETTTCCEEEEEEC-SS--CCCCEEECSSCEEECCSSSE-EEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             EEEEEECccCcEEEEEEC-CC--CceEEecCCCEEEEECCCCe-EEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence            999999988554 34432 22  22333457777777777777 999999999999888753211   235567886 78


Q ss_pred             CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEE
Q 014007          316 QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTV  395 (432)
Q Consensus       316 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  395 (432)
                      +.++..-.++.|.+.|..+++.+..+...                +..+....       .....+..+.+||+|+++.|
T Consensus       183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~----------------~L~~~~~~-------~~~~~~vlNGIA~dp~~~~l  239 (262)
T 3nol_A          183 EIFANVWQTNKIVRIDPETGKVTGIIDLN----------------GILAEAGP-------LPSPIDVLNGIAWDKEHHRL  239 (262)
T ss_dssp             EEEEEETTSSEEEEECTTTCBEEEEEECT----------------TGGGGSCS-------CCSSCCCEEEEEEETTTTEE
T ss_pred             EEEEEEccCCeEEEEECCCCcEEEEEECC----------------cCcccccc-------ccCcCCceEEEEEcCCCCEE
Confidence            76666667889999999999843322100                01110000       00112356899999998887


Q ss_pred             EEEec
Q 014007          396 VILGM  400 (432)
Q Consensus       396 ~~~~~  400 (432)
                      ++.+.
T Consensus       240 fVTGK  244 (262)
T 3nol_A          240 FVTGK  244 (262)
T ss_dssp             EEEET
T ss_pred             EEECC
Confidence            77765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.11  E-value=3e-11  Score=110.30  Aligned_cols=179  Identities=12%  Similarity=-0.008  Sum_probs=98.9

Q ss_pred             EEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccC-Ccc
Q 014007          143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN-PKG  218 (432)
Q Consensus       143 ~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-~~~  218 (432)
                      .++.++.|     +.|+.||..+|+.+..+.. +.+.+..+..++.+++   .|+.|+.||..+++.+..+..+.. .+.
T Consensus        11 ~v~~gs~d-----g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A           11 LLFVSTLD-----GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             EEEEEETT-----SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             EEEEEcCC-----CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            34444455     9999999999999988876 5666555666664444   389999999998887666543211 111


Q ss_pred             -eEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007          219 -LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (432)
Q Consensus       219 -~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~  296 (432)
                       ...+. .++.++   .|+.++.|+.||..+++.. .+..+.    ...++|++..|++++.|+. |+.||.++|+.+..
T Consensus        85 ~sp~~~-~~~~v~---~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           85 ASPCRS-SDGILY---MGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTRELRWN  155 (369)
T ss_dssp             TCSCC------CC---CCEEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSSSCCCE
T ss_pred             cCceEe-cCCEEE---EEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCCCEEEe
Confidence             11111 233332   2346899999999886543 333322    2456678889999999999 99999999998776


Q ss_pred             EEeCCCcCceEEEEECCCC---CEEEEEeCCCeEEEEEecCCCCCCC
Q 014007          297 VRRGADRAEIYSLAFSSNA---QWLAVSSDKGTVHVFNLKVNSGSAR  340 (432)
Q Consensus       297 ~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~  340 (432)
                      +....    .....++.+.   ..+++++.||.|+.||..+++.+..
T Consensus       156 ~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~  198 (369)
T 2hz6_A          156 ATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI  198 (369)
T ss_dssp             EEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred             Eeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence            65321    2223344432   4567788899999999999885543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.10  E-value=5.4e-07  Score=90.97  Aligned_cols=235  Identities=11%  Similarity=0.133  Sum_probs=153.3

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        88 v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      |.++...++|.+.+...+++|..|+..+.+.......  .....|.++....++.+.++...      +.+.+||..+++
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~--~~~~~i~~i~~d~~g~lwigt~~------~Gl~~~~~~~~~  246 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPI--LGTKQIQAILQQSPTRIWVATEG------AGLFLINPKTKE  246 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC------CCCEEEEEEEETTEEEEEEBS------SCEEEEETTTTE
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCC--CCCCeeEEEEEcCCCCEEEEECC------CCeEEEeCCCCe
Confidence            8888888888776654456899999766554321111  23456778887777766665433      458899977665


Q ss_pred             eeEEee--------cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEee-------ccCCcceEEEecCCCcEEE
Q 014007          168 CIGELS--------FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIET-------IANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       168 ~~~~~~--------~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  231 (432)
                      ......        ....|.++...++|.+.+ +++-|.+||..+++.......       ....|..+....+|. +.+
T Consensus       247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi  325 (795)
T 4a2l_A          247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWL  325 (795)
T ss_dssp             EEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEE
T ss_pred             EEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEE
Confidence            433221        135699999988887665 566899999877654332211       123466666666654 444


Q ss_pred             EeecCCCCcEEEEEccCCceeeeec-------cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe-----
Q 014007          232 VCPGLQKGQVRVEHYASKRTKFIMA-------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-----  299 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~~~~~~-------~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~-----  299 (432)
                      ++   .++-|..++........+..       ....|.++...++|. |..|+.++. |..||..+++.......     
T Consensus       326 gt---~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~G-l~~~~~~~~~~~~~~~~~~~~~  400 (795)
T 4a2l_A          326 GT---YFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGG-LNLYNPITQRFTSYTLQEDESA  400 (795)
T ss_dssp             EE---SSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSC-EEEECTTTCCEEEECCC-----
T ss_pred             EE---CCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCC-eEEEcCCCCcEEEEecCCCCcc
Confidence            43   56788888877655444321       245699999998887 456777767 99999877665432211     


Q ss_pred             -CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          300 -GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       300 -~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                       ......|.++...++|+.|..|+.++-|.+||..+++
T Consensus       401 ~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          401 RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             -CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence             0123579999998898856667777779999988765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.08  E-value=6.2e-08  Score=81.64  Aligned_cols=189  Identities=12%  Similarity=0.153  Sum_probs=128.7

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEE--EEEecCccEEEe--CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVVL--EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~--d~~i~  197 (432)
                      ..+..........+.|+. +.++.+.+.+   ....|+++|+.+++.+..+........  +++..+..+++.  ++.+.
T Consensus        35 ~~~phd~~~ftqGL~~~~-~~LyestG~~---g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           35 HSYPHDTKAFTEGFFYRN-GYFYESTGLN---GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEECCTTCEEEEEEEET-TEEEEEEEET---TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEecCCCCcccceEEEEC-CEEEEECCCC---CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence            344422334456788884 4555555543   013899999999999999885555544  555555555554  88999


Q ss_pred             EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeec--cC---CceeEEEEcCCCC
Q 014007          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--HD---SRIACFALTQDGQ  271 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~--~~---~~i~~~~~sp~~~  271 (432)
                      +||..+.+.+.++....   ....++++++.+++. .|  ++.|.++|..+.++ ..+..  ..   ..++.+.|. +|+
T Consensus       111 v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~S-dG--s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~  183 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMS-DG--TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE  183 (262)
T ss_dssp             EEETTTCCEEEEEECSS---CCCCEEECSSCEEEC-CS--SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEECccCcEEEEEECCC---CceEEecCCCEEEEE-CC--CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence            99999999999987643   335666788776543 23  57899999887443 33322  12   334567776 777


Q ss_pred             EEEEEcCCCceEEEEECCCCceEEEEEeCCC----------cCceEEEEECCCCCEEEEEe
Q 014007          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----------RAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       272 ~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~~~~  322 (432)
                      +.+..-.++. |.+.|.++++.+..+....-          ....+.|+|+|+++.|++.+
T Consensus       184 lyan~w~~~~-I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          184 IFANVWQTNK-IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEEETTSSE-EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEEEccCCe-EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            6655556777 99999999999999986311          13568999999888777666

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.07  E-value=4.8e-08  Score=82.28  Aligned_cols=163  Identities=8%  Similarity=-0.041  Sum_probs=114.4

Q ss_pred             ceeEEeecCCc--eEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007          167 RCIGELSFRSE--VRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (432)
Q Consensus       167 ~~~~~~~~~~~--v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  242 (432)
                      +.+.++.|...  ...+.|+.+..++..  +|.|+++|+.+++.+..+ .. .......+.++++.+++++  ..++.+.
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~lt--w~~~~v~  119 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLT--WTEGLLF  119 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEE--SSSCEEE
T ss_pred             EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEE--ccCCEEE
Confidence            45667776544  478888854334443  678999999999998887 33 3333444667788888764  4789999


Q ss_pred             EEEccCCcee-eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---CceEEEEECCCCCEE
Q 014007          243 VEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSNAQWL  318 (432)
Q Consensus       243 i~d~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l  318 (432)
                      +||..+.++. ++.. ...-..++  ++++.|+.+..++. |.++|..+.+.+..+....+.   ..++.+.|. +|+.+
T Consensus       120 V~D~~Tl~~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~-l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly  194 (268)
T 3nok_A          120 TWSGMPPQRERTTRY-SGEGWGLC--YWNGKLVRSDGGTM-LTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY  194 (268)
T ss_dssp             EEETTTTEEEEEEEC-SSCCCCEE--EETTEEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEECCcCcEEEEEeC-CCceeEEe--cCCCEEEEECCCCE-EEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence            9999885443 4432 22223443  57888888777888 999999999999888753222   245678887 77766


Q ss_pred             EEEeCCCeEEEEEecCCCCC
Q 014007          319 AVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       319 ~~~~~dg~i~iwd~~~~~~~  338 (432)
                      +....++.|.+.|..+++.+
T Consensus       195 anvw~s~~I~vIDp~TG~V~  214 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVV  214 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEE
T ss_pred             EEECCCCeEEEEeCCCCcEE
Confidence            66657889999999998843

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.05  E-value=3e-07  Score=90.50  Aligned_cols=192  Identities=14%  Similarity=0.161  Sum_probs=114.1

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcce-------e-EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI-------G-VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        96 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-------~-v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      ++.+++++.++.|.-+|..+++.+...........       . ...+....+ ..++ +..+     +.|..+|..+|+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v-~~~d-----g~l~alD~~tG~  138 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGD-KVYV-GTLD-----GRLIALDAKTGK  138 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBT-EEEE-ECTT-----SEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECC-EEEE-EcCC-----CEEEEEECCCCC
Confidence            34444444455588888888887765544211000       0 011222333 3333 3345     899999999999


Q ss_pred             eeEEeecC-----CceEEEEEecCccEEEe--------CCeEEEEEcCCCeeeEEEeecc-CC-----------------
Q 014007          168 CIGELSFR-----SEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIA-NP-----------------  216 (432)
Q Consensus       168 ~~~~~~~~-----~~v~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~-~~-----------------  216 (432)
                      .+..+...     ..+.+--.-.++.+++.        ++.|+.+|.++|+.+..+.... .+                 
T Consensus       139 ~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~  218 (668)
T 1kv9_A          139 AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ  218 (668)
T ss_dssp             EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred             EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence            98887631     11211111124555552        4789999999999988775321 00                 


Q ss_pred             -------------cceEEEecCCCcEEEEeecCCCC-------------------cEEEEEccCCceee-eec--cC---
Q 014007          217 -------------KGLCAVSQGVGSLVLVCPGLQKG-------------------QVRVEHYASKRTKF-IMA--HD---  258 (432)
Q Consensus       217 -------------~~~~~~~~~~~~~~~~~~g~~d~-------------------~i~i~d~~~~~~~~-~~~--~~---  258 (432)
                                   ...++++++.+.+++.+   .++                   .|..+|.++++..- +..  |.   
T Consensus       219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~---~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd  295 (668)
T 1kv9_A          219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGT---GNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD  295 (668)
T ss_dssp             SSCHHHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred             ccceeeeCCCCccccceEEcCCCCEEEEeC---CCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccc
Confidence                         11357777777666554   223                   48889988866542 221  22   


Q ss_pred             ----CceeEEEEcCCCC---EEEEEcCCCceEEEEECCCCceEEEEE
Q 014007          259 ----SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVR  298 (432)
Q Consensus       259 ----~~i~~~~~sp~~~---~l~~~~~dg~~i~vwd~~~~~~~~~~~  298 (432)
                          .++....+..+|+   .++.++.+|. ++++|..+|+.+..+.
T Consensus       296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          296 FTATQQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAEK  341 (668)
T ss_dssp             CCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred             ccCCCCcEEEEeccCCcEEEEEEEECCCCE-EEEEECCCCCEecccc
Confidence                2222223334665   6889999999 9999999999986654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.05  E-value=4e-07  Score=78.85  Aligned_cols=217  Identities=5%  Similarity=-0.093  Sum_probs=136.7

Q ss_pred             CCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEe
Q 014007           86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      ..+..++|++++..|..+.  .+.|..++.+.....  ..+. ........++++++ +.++++....     +.|.+++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~-~~~~~p~~ia~d~~~~~lyv~d~~~-----~~I~~~~  107 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TIIR-QDLGSPEGIALDHLGRTIFWTDSQL-----DRIEVAK  107 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEEC-TTCCCEEEEEEETTTTEEEEEETTT-----TEEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--EEEE-CCCCCccEEEEEecCCeEEEEECCC-----CEEEEEE
Confidence            3568999999877666555  344999998765432  2221 22245678888874 5555555555     8999999


Q ss_pred             CCCCceeEEee-cCCceEEEEEecC-ccEEEe-----CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEee
Q 014007          163 DHQSRCIGELS-FRSEVRSVKLRRD-RIIVVL-----EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       163 ~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~-----d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      ........... .......++++++ +.+.++     .+.|..+++.. +....+. ........++++++++.++++. 
T Consensus       108 ~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d-  185 (267)
T 1npe_A          108 MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVD-  185 (267)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEE-
T ss_pred             cCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEE-
Confidence            76433222222 2256789999995 444443     25788888753 3333332 2223345789999988888765 


Q ss_pred             cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC
Q 014007          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  314 (432)
                       ...+.|.++|.+......+.........++.. ++.++++....+. |.++|..+++.+..+..+. ......+++.|+
T Consensus       186 -~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~-v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~  261 (267)
T 1npe_A          186 -AGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPHK-QTRLYGITIALS  261 (267)
T ss_dssp             -TTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTE-EEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred             -CCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCe-EEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence             34689999999875444433223344667664 4444444445567 9999999999988887431 124677888887


Q ss_pred             CC
Q 014007          315 AQ  316 (432)
Q Consensus       315 ~~  316 (432)
                      +.
T Consensus       262 ~~  263 (267)
T 1npe_A          262 QC  263 (267)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.04  E-value=4.4e-07  Score=87.44  Aligned_cols=193  Identities=10%  Similarity=0.130  Sum_probs=113.0

Q ss_pred             CCCEEEEEc-CCcEEEEEc-CCCeeEEEeecccCcce--------eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007           96 DHGCFAAGT-DHGFRIYNC-DPFREIFRRDFERGGGI--------GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (432)
Q Consensus        96 ~~~~l~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~  165 (432)
                      ++.+++.+. ++.|.-+|. .+++.+....+......        ....+....+ ..++. ..+     +.|..+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~-~~d-----g~l~alD~~t  134 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAG-QIVKK-QAN-----GHLLALDAKT  134 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETT-EEEEE-CTT-----SEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECC-EEEEE-eCC-----CEEEEEECCC
Confidence            344444444 455888888 78877765544311100        0011223333 33333 334     8999999999


Q ss_pred             CceeEEeecCC-----ceEE-EEEecCccEEE-e-------CCeEEEEEcCCCeeeEEEeeccCC---------------
Q 014007          166 SRCIGELSFRS-----EVRS-VKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANP---------------  216 (432)
Q Consensus       166 ~~~~~~~~~~~-----~v~~-~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~---------------  216 (432)
                      |+.+..+....     .+.+ ..+. ++.+++ .       ++.|+.+|.++|+.+..+......               
T Consensus       135 G~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~  213 (571)
T 2ad6_A          135 GKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPH  213 (571)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccc
Confidence            99988876322     2221 1122 455554 2       579999999999988777543211               


Q ss_pred             -----------------------cceEEEecCCCcEEEEeecC----------CC----CcEEEEEccCCceee-ee--c
Q 014007          217 -----------------------KGLCAVSQGVGSLVLVCPGL----------QK----GQVRVEHYASKRTKF-IM--A  256 (432)
Q Consensus       217 -----------------------~~~~~~~~~~~~~~~~~~g~----------~d----~~i~i~d~~~~~~~~-~~--~  256 (432)
                                             ...+++.++...+++.+ +.          .+    +.|..+|.++++..- ++  .
T Consensus       214 ~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~-g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~  292 (571)
T 2ad6_A          214 YGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGS-GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP  292 (571)
T ss_dssp             GCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred             ccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEEC-CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence                                   01256666666666554 21          11    358889998866542 22  2


Q ss_pred             cC--------CceeEEEEcCCCC---EEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007          257 HD--------SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (432)
Q Consensus       257 ~~--------~~i~~~~~sp~~~---~l~~~~~dg~~i~vwd~~~~~~~~~~~~  299 (432)
                      |.        .++ -+....+|+   .++.++.+|. ++++|..+|+.+..+..
T Consensus       293 ~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          293 HDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             TCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             CcccccccCCCCE-EEecccCCcEEEEEEEeCCCcE-EEEEECCCCCEEeeecc
Confidence            21        111 122234774   6778899999 99999999999887764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.02  E-value=2.8e-07  Score=82.30  Aligned_cols=236  Identities=9%  Similarity=0.042  Sum_probs=147.8

Q ss_pred             CeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeeccc----------------CcceeEEEEeeeC-CeEEEecCC
Q 014007           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFER----------------GGGIGVVEMLFRC-NILALVGGG  148 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~-~~~~~~s~~  148 (432)
                      ...+++|.++|+++.++. ++.|..|+.++...........                ........+++.+ ++.++++..
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            345678999998677776 4558888876544321111000                0113467888886 666666543


Q ss_pred             CCCCCCCCeEEEEeCCCCceeEEee------cCCceEEEEEec-CccEEEeC--------------------CeEEEEEc
Q 014007          149 PDPQYPLNKVMIWDDHQSRCIGELS------FRSEVRSVKLRR-DRIIVVLE--------------------QKIFVYNF  201 (432)
Q Consensus       149 ~d~~~~~~~v~iwd~~~~~~~~~~~------~~~~v~~~~~~~-~~~~~~~d--------------------~~i~i~d~  201 (432)
                      .      +.|..+|..+++. ..+.      .......+++.+ +|.+.++|                    +.|..||.
T Consensus       100 ~------~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A          100 Y------YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             T------TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             C------CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            3      4588888765542 2221      123478899999 88776642                    56888998


Q ss_pred             CCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC---ceeeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007          202 ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLATSST  278 (432)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (432)
                      .+++....... ......++++++++.++++-  ...+.|.+|++...   ....+....+ ...+++.++|+++++...
T Consensus       173 ~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d--~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          173 STKETTLLLKE-LHVPGGAEVSADSSFVLVAE--FLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTTEEEEEEEE-ESCCCEEEECTTSSEEEEEE--GGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEeccC-CccCcceEECCCCCEEEEEe--CCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence            76664333322 23345789999998777764  24688999998752   2222222233 788999999987766544


Q ss_pred             ----------CCceEEEEECCCCceEEEEEeCCC--cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          279 ----------KGTLVRIFNTLDGTLLQEVRRGAD--RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       279 ----------dg~~i~vwd~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                                .+. |..+|. .++.+..+.....  -..++.+++ .+++++++....+.|..+++....
T Consensus       249 ~~~~~~~~~~~~~-v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          249 ELDGNMHGRVDPK-GIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             ETTSSTTSCEEEE-EEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred             cccccccCCCccE-EEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence                      456 888885 6888877764311  134667776 466666665678899999987543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.01  E-value=3.9e-07  Score=76.77  Aligned_cols=179  Identities=9%  Similarity=0.028  Sum_probs=124.7

Q ss_pred             ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEE--EEEecCccEEEe--CCeEEEEEcCCC
Q 014007          129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVVL--EQKIFVYNFADL  204 (432)
Q Consensus       129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~--d~~i~i~d~~~~  204 (432)
                      ......+.|+.+.++..++ .+     |.|+++|+++++.+..+ .......  +++..+..+++.  ++.+.+||..+.
T Consensus        54 ~~ftqGL~~~~~~Ly~stG-~~-----g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           54 NAFTQGLVFHQGHFFESTG-HQ-----GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             TCCEEEEEEETTEEEEEET-TT-----TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred             ccccceEEEECCEEEEEcC-CC-----CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence            3444677888655555544 44     78999999999998887 5555544  666555555555  899999999999


Q ss_pred             eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeee--ccCC---ceeEEEEcCCCCEEEEEcC
Q 014007          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM--AHDS---RIACFALTQDGQLLATSST  278 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~--~~~~---~i~~~~~sp~~~~l~~~~~  278 (432)
                      +.+.++.....   ...++++++.+++..   .++.|.++|..+.++ ..+.  .+..   .++.+.|. +|++.+..-.
T Consensus       127 ~~~~ti~~~~e---GwGLt~Dg~~L~vSd---Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~  199 (268)
T 3nok_A          127 QRERTTRYSGE---GWGLCYWNGKLVRSD---GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH  199 (268)
T ss_dssp             EEEEEEECSSC---CCCEEEETTEEEEEC---SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             cEEEEEeCCCc---eeEEecCCCEEEEEC---CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC
Confidence            99999876433   345567787766543   378999999888443 3332  2222   34667776 7766655556


Q ss_pred             CCceEEEEECCCCceEEEEEeCC-----------CcCceEEEEECCCCCEEEEEe
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      +.. |.+.|.++++.+..+....           .....+.|+|+|+++.|+..+
T Consensus       200 s~~-I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          200 SSD-VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CSE-EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCe-EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            677 9999999999999988531           113578999999766555544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.99  E-value=1.2e-06  Score=73.28  Aligned_cols=189  Identities=15%  Similarity=0.167  Sum_probs=129.2

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceE--EEEEecCccEEEe--CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR--SVKLRRDRIIVVL--EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~--d~~i~  197 (432)
                      ..++.........+.|+++.++..+|...    ...|+.+|+.+++.+..+.......  .+++..+..+++.  ++.+.
T Consensus        13 ~~~phd~~~ftqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           13 KRYPHDTTAFTEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEECCTTCCEEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEcCCCCccccccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence            34442344556678888865555555431    1589999999999999988555544  3455544444444  89999


Q ss_pred             EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeec--cC---CceeEEEEcCCCC
Q 014007          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--HD---SRIACFALTQDGQ  271 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~--~~---~~i~~~~~sp~~~  271 (432)
                      +||..+.+.+.++.....   ...+.+++..+++.- |  ++.|.++|..+..+ ..+.-  +.   ..++.+.+. +|+
T Consensus        89 v~D~~tl~~~~ti~~~~~---Gwglt~dg~~L~vSd-g--s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGE---GWALTSDDSHLYMSD-G--TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             EEETTTTEEEEEEECSSC---CCEEEECSSCEEEEC-S--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEECCcCcEEEEEeCCCC---ceEEeeCCCEEEEEC-C--CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence            999999999999876432   456668887776543 3  67899999888433 33322  22   234566665 776


Q ss_pred             EEEEEcCCCceEEEEECCCCceEEEEEeCC-----------CcCceEEEEECCCCCEEEEEe
Q 014007          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       272 ~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      ..+..-.+.. |.+.|.++++.+..+....           .....+.|+++|+++.|...+
T Consensus       162 lyanvw~s~~-I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          162 LLANVWLTSR-IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEETTTTE-EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCe-EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            6655555667 9999999999999998531           113578999999877666665

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.97  E-value=3.9e-06  Score=84.67  Aligned_cols=236  Identities=10%  Similarity=0.052  Sum_probs=152.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc----cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      ...|.++...++|.+.+.. ++||.+|+..+..........    .-....|.++....++..-++...      +-|..
T Consensus       262 ~~~i~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~------~Gl~~  334 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWIGT-FNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYF------GGLNY  334 (795)
T ss_dssp             CSBEEEEEECTTSCEEEEE-SSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESS------SCEEE
T ss_pred             CCeEEEEEEcCCCCEEEEe-CChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECC------CCeEE
Confidence            4679999999998866554 449999997766543221110    113457888988888776665433      57888


Q ss_pred             EeCCCCceeEEee--------cCCceEEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEee--------ccCCcceEEE
Q 014007          161 WDDHQSRCIGELS--------FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIET--------IANPKGLCAV  222 (432)
Q Consensus       161 wd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~  222 (432)
                      |+..++... .+.        ....|.++...++|.+.+ + ++-|..||..+++.......        ....|.++..
T Consensus       335 ~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~  413 (795)
T 4a2l_A          335 YHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV  413 (795)
T ss_dssp             ECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred             eCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence            886554422 222        245689999988887655 4 55899999876654322111        1244556666


Q ss_pred             ecCCCcEEEEeecCCCCcEEEEEccCCceeeeec-----cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEE
Q 014007          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (432)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~  297 (432)
                      ..++..+++++   .++.|.++|..++....+..     ....|.++...++|.+.+. +.+ . |.+||..+++.....
T Consensus       414 d~~g~~lWigt---~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-G-l~~~~~~~~~~~~~~  487 (795)
T 4a2l_A          414 DEKKSLVYIGT---HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-A-LVRFNPEQRSFTTIE  487 (795)
T ss_dssp             ETTTTEEEEEE---TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-C-EEEEETTTTEEEECC
T ss_pred             cCCCCEEEEEe---CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-c-eeEEeCCCCeEEEcc
Confidence            66654256554   45678999988876665542     3457999999988876554 444 4 899998776543321


Q ss_pred             Ee----CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          298 RR----GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       298 ~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      ..    ......|.++...++|++.+...  +.|..||..+.+
T Consensus       488 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~  528 (795)
T 4a2l_A          488 KEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD  528 (795)
T ss_dssp             BCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred             ccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence            11    11235789999999998766554  458899987754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.94  E-value=1.4e-06  Score=72.88  Aligned_cols=164  Identities=10%  Similarity=0.030  Sum_probs=113.9

Q ss_pred             ceeEEeecCC--ceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCc
Q 014007          167 RCIGELSFRS--EVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (432)
Q Consensus       167 ~~~~~~~~~~--~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (432)
                      +.+.++.|..  -...+.|+.+..+...    .+.|+.+|+.+++.+..+...... ....+...++.++.++  ..++.
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~~~~ly~lt--w~~~~   86 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-FGAGIVAWRDRLIQLT--WRNHE   86 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-CEEEEEEETTEEEEEE--SSSSE
T ss_pred             EEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-ceeEEEEeCCEEEEEE--eeCCE
Confidence            4566777654  4668999874333332    248999999999999888654433 3445556677887764  47899


Q ss_pred             EEEEEccCCcee-eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---CceEEEEECCCCC
Q 014007          241 VRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSNAQ  316 (432)
Q Consensus       241 i~i~d~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~  316 (432)
                      +.+||..+.++. ++. ....-..++  ++++.|+.+..++. |.++|..+.+.+..+....+.   ..++.+.|. +|+
T Consensus        87 v~v~D~~tl~~~~ti~-~~~~Gwglt--~dg~~L~vSdgs~~-l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X           87 GFVYDLATLTPRARFR-YPGEGWALT--SDDSHLYMSDGTAV-IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             EEEEETTTTEEEEEEE-CSSCCCEEE--ECSSCEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEECCcCcEEEEEe-CCCCceEEe--eCCCEEEEECCCCe-EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence            999999885443 443 223223444  57777777777888 999999999999888753221   245677775 777


Q ss_pred             EEEEEeCCCeEEEEEecCCCCC
Q 014007          317 WLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       317 ~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      .++..-.+..|.+.|..+++.+
T Consensus       162 lyanvw~s~~I~vIDp~tG~V~  183 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPASGKVV  183 (243)
T ss_dssp             EEEEETTTTEEEEECTTTCBEE
T ss_pred             EEEEECCCCeEEEEECCCCCEE
Confidence            6666657889999999999843

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.93  E-value=1.8e-06  Score=77.06  Aligned_cols=231  Identities=9%  Similarity=0.014  Sum_probs=138.3

Q ss_pred             EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee---------------------cCCceEEEEEec-CccE
Q 014007          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---------------------FRSEVRSVKLRR-DRII  189 (432)
Q Consensus       132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~---------------------~~~~v~~~~~~~-~~~~  189 (432)
                      ...+++++++..+.++..+     +.|..||..+++.. .+.                     ....+.++++.+ ++.+
T Consensus        21 p~~i~~d~~g~~l~v~~~~-----~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l   94 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQD-----GRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL   94 (322)
T ss_dssp             CCCEECCTTCSSEEEECTT-----SEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred             ceEEEEcCCCCEEEEEcCC-----CeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence            4456677777644445555     89999987665432 222                     013578899997 7776


Q ss_pred             EEe--CCeEEEEEcCCCeeeEEEeec-----cCCcceEEEec-CCCcEEEEeec---------------CCCCcEEEEEc
Q 014007          190 VVL--EQKIFVYNFADLKLLHQIETI-----ANPKGLCAVSQ-GVGSLVLVCPG---------------LQKGQVRVEHY  246 (432)
Q Consensus       190 ~~~--d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~g---------------~~d~~i~i~d~  246 (432)
                      ++.  .+.|..+|..+++. ..+...     ......+++.+ +| .++++..+               ..++.|..+|.
T Consensus        95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            664  45688888765532 222111     12345688888 76 45555322               12467888888


Q ss_pred             cCCceeeeeccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCc--eEEEEEeCCCcCceEEEEECCCCCEEEEEeC
Q 014007          247 ASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSD  323 (432)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  323 (432)
                      .++....+...-.....++++|+|++|+.+ ..++. |++|++....  ....+..  ..+ ...+++.++|+++++...
T Consensus       173 ~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~-I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          173 STKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQ-IVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTE-EEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCe-EEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecC
Confidence            766555443333456789999999866555 55677 9999987531  1222322  123 788999999987666544


Q ss_pred             ----------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC----CCceEEEEc
Q 014007          324 ----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE----GSPYIVAFG  389 (432)
Q Consensus       324 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s  389 (432)
                                .+.|..+|.. ++.                                   +..+..+.    ..+..+++ 
T Consensus       249 ~~~~~~~~~~~~~v~~~d~~-G~~-----------------------------------~~~~~~~~g~~~~~~~~~~~-  291 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDEF-GNI-----------------------------------LEVIPLPPPFAGEHFEQIQE-  291 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECTT-SCE-----------------------------------EEEEECCTTTTTSCCCEEEE-
T ss_pred             cccccccCCCccEEEEECCC-CCE-----------------------------------EEEEECCCCCccccceEEEE-
Confidence                      3567777653 331                                   11222222    24666766 


Q ss_pred             cCCCEEEEEecCCeEEEEEecC
Q 014007          390 HQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       390 ~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                      .++++.++....+.|.+++++.
T Consensus       292 ~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          292 HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             ETTEEEEECSSCSEEEEEEC--
T ss_pred             eCCEEEEeecCCCceEEEeccc
Confidence            4555555555678888877643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.92  E-value=5.4e-06  Score=79.93  Aligned_cols=195  Identities=9%  Similarity=0.110  Sum_probs=113.4

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEeecccCccee------EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCcee
Q 014007           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIG------VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (432)
Q Consensus        96 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~  169 (432)
                      ++.+++++..+.|.-+|..+++.+............      ...+....+..++.+  .+     +.|.-+|..+|+.+
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t--~d-----g~l~AlD~~TG~~~  140 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT--LD-----ASVVALNKNTGKVV  140 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE--TT-----TEEEEEESSSCCEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEe--CC-----CEEEEEECCCCCEE
Confidence            455445444455888888888877665543111100      011223333333333  34     89999999999998


Q ss_pred             EEeecCC-----ceE-EEEEecC---c--cEEE-e-------CCeEEEEEcCCCeeeEEEeeccCC--------------
Q 014007          170 GELSFRS-----EVR-SVKLRRD---R--IIVV-L-------EQKIFVYNFADLKLLHQIETIANP--------------  216 (432)
Q Consensus       170 ~~~~~~~-----~v~-~~~~~~~---~--~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~--------------  216 (432)
                      ..+....     .+. ...+..+   +  .+++ .       ++.|+.+|..+|+.+.........              
T Consensus       141 W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~  220 (582)
T 1flg_A          141 WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGD  220 (582)
T ss_dssp             EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSC
T ss_pred             eeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccc
Confidence            8876221     121 1122222   2  3333 2       578999999999887665421000              


Q ss_pred             ---------------------------cceEEEecCCCcEEEEeecC----------C-------C----CcEEEEEccC
Q 014007          217 ---------------------------KGLCAVSQGVGSLVLVCPGL----------Q-------K----GQVRVEHYAS  248 (432)
Q Consensus       217 ---------------------------~~~~~~~~~~~~~~~~~~g~----------~-------d----~~i~i~d~~~  248 (432)
                                                 -...++++..+.+++.+...          .       |    +.|..+|.++
T Consensus       221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T  300 (582)
T 1flg_A          221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS  300 (582)
T ss_dssp             TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred             cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence                                       01246667767676654210          1       2    6799999988


Q ss_pred             Cceee-ee--ccC--------CceeEEEEc-CCCC---EEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007          249 KRTKF-IM--AHD--------SRIACFALT-QDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (432)
Q Consensus       249 ~~~~~-~~--~~~--------~~i~~~~~s-p~~~---~l~~~~~dg~~i~vwd~~~~~~~~~~~~  299 (432)
                      ++..- ++  .|.        .++. +... .+|+   .++.++.+|. ++++|..+|+.+..+..
T Consensus       301 G~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          301 GEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGF-FYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             CCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCce-EEEEECCCCCEeccccc
Confidence            66543 22  232        1111 1221 4674   7888999999 99999999999887764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.90  E-value=3.4e-06  Score=81.29  Aligned_cols=195  Identities=12%  Similarity=0.141  Sum_probs=113.6

Q ss_pred             CCCEEEEEc-CCcEEEEEc-CCCeeEEEeecccCcc-e-------eEEEEeeeC-CeE---EEecCCCCCCCCCCeEEEE
Q 014007           96 DHGCFAAGT-DHGFRIYNC-DPFREIFRRDFERGGG-I-------GVVEMLFRC-NIL---ALVGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        96 ~~~~l~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~-~-------~v~~~~~~~-~~~---~~~s~~~d~~~~~~~v~iw  161 (432)
                      ++.+++++. ++.|.-+|. .+++.+.......... .       ....+.+.+ ++.   .++.+..+     +.|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~d-----g~l~Al  136 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLD-----GNVAAL  136 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTT-----SEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCC-----CEEEEE
Confidence            333333333 455778888 7777776554431110 0       011233321 222   12333345     899999


Q ss_pred             eCCCCceeEEeecCC-----ceEE-EEEecCccEEE-e-------CCeEEEEEcCCCeeeEEEeeccCCc----------
Q 014007          162 DDHQSRCIGELSFRS-----EVRS-VKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANPK----------  217 (432)
Q Consensus       162 d~~~~~~~~~~~~~~-----~v~~-~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~~----------  217 (432)
                      |..+|+.+.......     .+.+ ..+ .++.+++ .       ++.|+.+|.++|+.+..+.......          
T Consensus       137 Da~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~  215 (599)
T 1w6s_A          137 NAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNI  215 (599)
T ss_dssp             ETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred             ECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccc
Confidence            999999988776322     2222 122 2555555 2       5799999999999887775432110          


Q ss_pred             ----------------------------ceEEEecCCCcEEEEeecCC--------------CCcEEEEEccCCceee-e
Q 014007          218 ----------------------------GLCAVSQGVGSLVLVCPGLQ--------------KGQVRVEHYASKRTKF-I  254 (432)
Q Consensus       218 ----------------------------~~~~~~~~~~~~~~~~~g~~--------------d~~i~i~d~~~~~~~~-~  254 (432)
                                                  ...++.+..+.+++.+ +..              .+.|..+|.++++..- +
T Consensus       216 ~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~-g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~  294 (599)
T 1w6s_A          216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT-GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY  294 (599)
T ss_dssp             TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred             ccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC-CCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence                                        1245666766666554 311              2478889998876542 2


Q ss_pred             e--ccCC--------ceeEEEEc-CCC---CEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007          255 M--AHDS--------RIACFALT-QDG---QLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (432)
Q Consensus       255 ~--~~~~--------~i~~~~~s-p~~---~~l~~~~~dg~~i~vwd~~~~~~~~~~~~  299 (432)
                      +  .|..        ++. +... .+|   ..++.++.+|. ++++|.++|+.+.....
T Consensus       295 q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~  351 (599)
T 1w6s_A          295 QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANKL  351 (599)
T ss_dssp             ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             ecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcE-EEEEECCCCCEeecccc
Confidence            2  2221        121 2222 467   56778899999 99999999999887763

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.86  E-value=2.2e-09  Score=97.85  Aligned_cols=218  Identities=11%  Similarity=0.048  Sum_probs=112.0

Q ss_pred             CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeec
Q 014007           96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (432)
Q Consensus        96 ~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~  174 (432)
                      ++..+++++ ++.|+.||..+++.......     ..+.+..+..++..+++++.|     +.|+.||..+|+.+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-----CCEEECTTT-----CCEEEC-----CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEcCCCEEEEeCCC-----CEEEEEECCCCceeeeeec
Confidence            456677776 55699999999887754433     233333344566566666677     9999999999988766652


Q ss_pred             C--CceE-EEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC
Q 014007          175 R--SEVR-SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (432)
Q Consensus       175 ~--~~v~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~  249 (432)
                      .  ..+. ...+..++.+++  .++.|+.||..+|+.+..+..+.    ...++|+++.+++.   +.++.|+.||.+++
T Consensus        78 ~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~---~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           78 TIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLG---RTEYTITMYDTKTR  150 (369)
T ss_dssp             CHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEE---EEEEEEECCCSSSS
T ss_pred             cCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEE---ecCCEEEEEECCCC
Confidence            1  1111 111112444333  37899999999999887765433    23456666655543   36799999999886


Q ss_pred             cee-eeeccCCceeEEEEcCCC---CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE-EEEECCCCCEEEE--Ee
Q 014007          250 RTK-FIMAHDSRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY-SLAFSSNAQWLAV--SS  322 (432)
Q Consensus       250 ~~~-~~~~~~~~i~~~~~sp~~---~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~--~~  322 (432)
                      ... .+..+.  .....+..+.   ..+++++.+|. |+.||.++|+.+..+..   ..++. ...++++|...+.  ..
T Consensus       151 ~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~---~~pv~~~~~~~~dg~~~v~~~~~  224 (369)
T 2hz6_A          151 ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGL-VVTVDSESGDVLWIQNY---ASPVVAFYVWQREGLRKVMHINV  224 (369)
T ss_dssp             SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCE-EEEECTTTCCEEEEEEC---SSCEEEEEECTTSSCEEECCEEE
T ss_pred             CEEEeEeccc--ccCccccCCccccceEEEECCCCE-EEEEECCCCcEEEEecC---CCceEEEEEecCCceEeccceee
Confidence            542 222111  1223333332   45777888999 99999999999888773   24443 3456666653210  01


Q ss_pred             CCCeEEEEEecCCC
Q 014007          323 DKGTVHVFNLKVNS  336 (432)
Q Consensus       323 ~dg~i~iwd~~~~~  336 (432)
                      .++.++.+|..+++
T Consensus       225 ~~~~l~~ld~~tG~  238 (369)
T 2hz6_A          225 AVETLRYLTFMSGE  238 (369)
T ss_dssp             EHHHHHHHHHHHHH
T ss_pred             cccceeeeehhcCC
Confidence            14456777776655

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.86  E-value=4.9e-06  Score=73.55  Aligned_cols=227  Identities=11%  Similarity=0.024  Sum_probs=136.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      .....++|+++|+++++... +.|..|+.+... .  ..+.  .......+++.+++.++++....   ....|..+|..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~--~~~~--~~~~p~gia~~~dG~l~vad~~~---~~~~v~~~d~~  103 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q--IHAT--VEGKVSGLAFTSNGDLVATGWNA---DSIPVVSLVKS  103 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-E--EEEE--CSSEEEEEEECTTSCEEEEEECT---TSCEEEEEECT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-E--EEEe--CCCCceeEEEcCCCcEEEEeccC---CcceEEEEcCC
Confidence            46788999999997776654 448888876532 2  2222  22457788899888766654321   00247777877


Q ss_pred             CCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCee-eEEEee-------ccCCcceEEEecCCCcEEE
Q 014007          165 QSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKL-LHQIET-------IANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       165 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~  231 (432)
                      +++......  .......++..+++..++.   ++.|+++|...++. +.....       .........++++++.+++
T Consensus       104 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv  183 (306)
T 2p4o_A          104 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYV  183 (306)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEE
T ss_pred             CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEE
Confidence            776543333  2233455555566655553   57899999765431 111110       0011112223888887777


Q ss_pred             EeecCCCCcEEEEEccC-Cce---eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          232 VCPGLQKGQVRVEHYAS-KRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~-~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      +-  ...+.|..|+++. +.+   ..+. .......++++++|+++++....+. |.++|. .++..........-...+
T Consensus       184 ~d--~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~-V~~~~~-~G~~~~~~~~~~~~~~p~  258 (306)
T 2p4o_A          184 SN--TEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNS-VVRIAP-DRSTTIIAQAEQGVIGST  258 (306)
T ss_dssp             EE--TTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCC-EEEECT-TCCEEEEECGGGTCTTEE
T ss_pred             Ee--CCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCe-EEEECC-CCCEEEEeecccccCCce
Confidence            64  3578999999875 222   1221 1235678899999988777666778 999996 466533222111124689


Q ss_pred             EEEEC---CCCCEEEEEeCCC
Q 014007          308 SLAFS---SNAQWLAVSSDKG  325 (432)
Q Consensus       308 ~~~~s---~~~~~l~~~~~dg  325 (432)
                      +++|.   |+++.|+.++..+
T Consensus       259 ~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          259 AVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEEECCSTTTTTEEEEEECTT
T ss_pred             EEEEecccCCCCEEEEECCCC
Confidence            99998   8887777666443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.85  E-value=2.1e-06  Score=84.46  Aligned_cols=236  Identities=9%  Similarity=0.042  Sum_probs=141.1

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCc-ceeEEE-EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee
Q 014007           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGG-GIGVVE-MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (432)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~  173 (432)
                      +..+++++ ++.|..+|..+++........... ...+.. .... ++..++.......-.++.|+.+|..+|+.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            34555665 556999999998887665542000 011110 1112 4444544322000011899999999999988875


Q ss_pred             c-C-Cc------------------------------eEEEEEecCccEEE--e-CC-------------------eEEEE
Q 014007          174 F-R-SE------------------------------VRSVKLRRDRIIVV--L-EQ-------------------KIFVY  199 (432)
Q Consensus       174 ~-~-~~------------------------------v~~~~~~~~~~~~~--~-d~-------------------~i~i~  199 (432)
                      . . .+                              ...+++.++...++  + ++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            2 1 10                              12367777655554  2 33                   49999


Q ss_pred             EcCCCeeeEEEeeccC---------CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee-eeccC-----------
Q 014007          200 NFADLKLLHQIETIAN---------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHD-----------  258 (432)
Q Consensus       200 d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~-----------  258 (432)
                      |.++|+.+..++....         +.....+..+++..-++..++.+|.++++|..++++.. .....           
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            9999999888765321         12223334466532122234689999999988865431 10000           


Q ss_pred             -Cc------------------------eeEEEEcCCCCEEEEE------------------------------------c
Q 014007          259 -SR------------------------IACFALTQDGQLLATS------------------------------------S  277 (432)
Q Consensus       259 -~~------------------------i~~~~~sp~~~~l~~~------------------------------------~  277 (432)
                       .+                        -..++++|+..+++..                                    .
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence             00                        0126777876665542                                    1


Q ss_pred             CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       278 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                      .+|. |..||+.+++.+..+..+   .......+...+.+++.++.||.|+.||.++++.
T Consensus       436 ~~g~-l~A~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          436 VSGA-LLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             CEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccce-EEEEeCCCCcEEEEccCC---CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence            2377 999999999998888743   2333344445678888999999999999999884

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.83  E-value=4.8e-05  Score=67.45  Aligned_cols=174  Identities=8%  Similarity=-0.012  Sum_probs=115.6

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEE-Ee---CCeEEEEEcCC---CeeeEE-EeeccCCcceEEEecCCC
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIV-VL---EQKIFVYNFAD---LKLLHQ-IETIANPKGLCAVSQGVG  227 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~---d~~i~i~d~~~---~~~~~~-~~~~~~~~~~~~~~~~~~  227 (432)
                      ..|+..|+...+....+.....+.+++|++++..+ .+   ++.|+.+++..   +..... +.........+++++.++
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            57999999887766655556678899999865433 33   57899999875   122222 222223446789998888


Q ss_pred             cEEEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEcC-C-CceEEEEECCCCceEEEEEeCCCcC
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST-K-GTLVRIFNTLDGTLLQEVRRGADRA  304 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~-d-g~~i~vwd~~~~~~~~~~~~~~~~~  304 (432)
                      .++++-  ...+.|.+++++......+. ........++++|.+..|+.+.. . +. |..+++ +++....+... .-.
T Consensus        90 ~ly~~d--~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~-I~~~~~-dG~~~~~~~~~-~~~  164 (316)
T 1ijq_A           90 NIYWTD--SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGL-NGVDIYSLVTE-NIQ  164 (316)
T ss_dssp             EEEEEE--TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEET-TSCCEEEEECS-SCS
T ss_pred             eEEEEE--CCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe-EEEEcC-CCCCeEEEEEC-CCC
Confidence            777654  35789999999876554443 23456789999996665555443 3 56 888886 45544444321 224


Q ss_pred             ceEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007          305 EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~  334 (432)
                      ....+++++++..|+.+. ..+.|..+|+..
T Consensus       165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            678999999877776665 567899999874

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.83  E-value=1.3e-06  Score=84.09  Aligned_cols=230  Identities=7%  Similarity=-0.031  Sum_probs=137.9

Q ss_pred             CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcce--eEEE-EeeeCCeEEEecCCC-----CCCCCCCeEEEEeCCCCc
Q 014007           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI--GVVE-MLFRCNILALVGGGP-----DPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~--~v~~-~~~~~~~~~~~s~~~-----d~~~~~~~v~iwd~~~~~  167 (432)
                      +..+++++ ++.+..+|..+++......+. .+..  .+.. .... ++..++....     +     +.|+.+|..+|+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~-~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~-----g~v~a~D~~tG~  187 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVC-DPKVGSTLTQAPFVA-KDTVLMGCSGAELGVR-----GAVNAFDLKTGE  187 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEE-TTEEEEECBCGGGTCC-----CEEEEEETTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCC-CCCccceeccCCEEE-CCEEEEEecCCccCCC-----CEEEEEECCCCc
Confidence            34555555 555999999888887665553 1110  1111 1112 3444554432     5     899999999999


Q ss_pred             eeEEeecCCce---------------------------------------EEEEEecCccEEE-eC--------------
Q 014007          168 CIGELSFRSEV---------------------------------------RSVKLRRDRIIVV-LE--------------  193 (432)
Q Consensus       168 ~~~~~~~~~~v---------------------------------------~~~~~~~~~~~~~-~d--------------  193 (432)
                      .+.++......                                       ..+++.++...+. ..              
T Consensus       188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd  267 (571)
T 2ad6_A          188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD  267 (571)
T ss_dssp             EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred             EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence            98887632211                                       1245666433333 21              


Q ss_pred             ----CeEEEEEcCCCeeeEEEeeccC------Ccce---EEEecCCCcEEEEeecCCCCcEEEEEccCCceee-eeccC-
Q 014007          194 ----QKIFVYNFADLKLLHQIETIAN------PKGL---CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHD-  258 (432)
Q Consensus       194 ----~~i~i~d~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~-  258 (432)
                          +.|..+|.++++.+..++...+      ....   +....+|+...++..+..+|.+.++|..++++.. ..... 
T Consensus       268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~  347 (571)
T 2ad6_A          268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA  347 (571)
T ss_dssp             CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence                2599999999998887764321      1111   2222456421112124578999999988765432 11100 


Q ss_pred             ------------Cce--------------------------eEEEEcCCCCEEEEEc-----------------------
Q 014007          259 ------------SRI--------------------------ACFALTQDGQLLATSS-----------------------  277 (432)
Q Consensus       259 ------------~~i--------------------------~~~~~sp~~~~l~~~~-----------------------  277 (432)
                                  .++                          ..++++|+..+|++..                       
T Consensus       348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  427 (571)
T 2ad6_A          348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427 (571)
T ss_dssp             CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence                        111                          2467888777776653                       


Q ss_pred             --------------CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          278 --------------TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       278 --------------~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                                    .++. |..||+.+++.+.++...   ..+....+...+..++.++.||.|+.||.++++.
T Consensus       428 ~~~~~~~~~~~~~~~~g~-l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          428 TLAMYPGPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEEEECTTSTTSCCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceeccCccccCCCCCCe-EEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence                          2467 999999999998888743   2222222333456777789999999999999984

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.82  E-value=3.6e-05  Score=68.23  Aligned_cols=227  Identities=9%  Similarity=-0.083  Sum_probs=141.1

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCC----CceeEEee
Q 014007           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ----SRCIGELS  173 (432)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~----~~~~~~~~  173 (432)
                      +|+.+..+.|+..++++.+..  ..+.  .......+.|++. +..+.+....     +.|..+++..    ......+.
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~--~~~~--~~~~p~g~~~d~~~~~ly~~D~~~-----~~I~~~~~~g~~~~~~~~~~~~   73 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYT--SLIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS   73 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCE--EEEC--SCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEEC
T ss_pred             EEEEECCCeEEEEECCCcceE--ehhc--CCCceEEEEEEeCCCEEEEEECCC-----CcEEEEECCCCCCCcccEEEEe
Confidence            577777778999998876543  2232  3445678888864 4555555555     8999999875    22222232


Q ss_pred             -cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC
Q 014007          174 -FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (432)
Q Consensus       174 -~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~  248 (432)
                       .-....++++.+. +.+.++   .+.|.++++........+.........++++|.+..++++-.+ ..+.|..++++.
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG  152 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG  152 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC
Confidence             2245688999864 444343   5789999986443322233233445678999988877766422 237888888877


Q ss_pred             Cceeeee-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeC-CCcCceEEEEECCCCCEEEEEeCCC
Q 014007          249 KRTKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKG  325 (432)
Q Consensus       249 ~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg  325 (432)
                      .....+. ..-.....+++++++..|+.+. ..+. |..+|+.. .....+... ........+++. .+.++.+-...+
T Consensus       153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe-EEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence            5554443 2345678999998776665554 4556 99999864 333344321 112346778885 455555556778


Q ss_pred             eEEEEEecCCCCC
Q 014007          326 TVHVFNLKVNSGS  338 (432)
Q Consensus       326 ~i~iwd~~~~~~~  338 (432)
                      .|..++..+++.+
T Consensus       230 ~V~~~~~~~g~~~  242 (316)
T 1ijq_A          230 AIFSANRLTGSDV  242 (316)
T ss_dssp             EEEEEETTTCCCC
T ss_pred             eEEEEeCCCCcce
Confidence            9999998776643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.81  E-value=5.1e-05  Score=68.28  Aligned_cols=239  Identities=8%  Similarity=-0.036  Sum_probs=148.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      .+..+|.+..+ ..+|+.+..+.|+..+++.....  ..+.  .......++|++ ++.++.+....     +.|+.+++
T Consensus        33 ~d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~--~~~~--~~~~~~~l~~d~~~~~ly~~D~~~-----~~I~r~~~  102 (349)
T 3v64_C           33 PDRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYT--LLLN--NLENAIALDFHHRRELVFWSDVTL-----DRILRANL  102 (349)
T ss_dssp             TTSSCEEESSS-CCEEEEECBSCEEEECTTSCCEE--EEEC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEET
T ss_pred             CCCCccccccc-CceeEeecccceEEEeCCCCeeE--Eeec--CCCceEEEEEeccccEEEEEeccC-----CceEEEec
Confidence            34556767666 45666676667888887655433  2222  334577888885 45555555445     89999998


Q ss_pred             CCCceeEEee-cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC
Q 014007          164 HQSRCIGELS-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (432)
Q Consensus       164 ~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (432)
                      ..+.....+. ......++++.+. +.+..+   .+.|.+.++........+.........++++|.+..++++-.+ ..
T Consensus       103 ~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~-~~  181 (349)
T 3v64_C          103 NGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NT  181 (349)
T ss_dssp             TSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS-SS
T ss_pred             CCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC-CC
Confidence            7665433333 3345678999874 444343   5689999976433222222222344678999988877765422 23


Q ss_pred             CcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC
Q 014007          239 GQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (432)
Q Consensus       239 ~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  316 (432)
                      +.|..++++......+. ..-.....++++|++..|+.+. ..+. |..+|+.... ...+... .......+++ ..+.
T Consensus       182 ~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~-I~~~~~dG~~-~~~~~~~-~~~~P~giav-~~~~  257 (349)
T 3v64_C          182 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSH-RKAVISQ-GLPHPFAITV-FEDS  257 (349)
T ss_dssp             CEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCS-CEEEECS-SCSSEEEEEE-ETTE
T ss_pred             CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE-EEEEeCCCCc-eEEEEeC-CCCCceEEEE-ECCE
Confidence            78999998875544443 2344578999998666665554 4566 9999976433 3333321 2245678888 3455


Q ss_pred             EEEEEeCCCeEEEEEecCCCCC
Q 014007          317 WLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       317 ~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      .+.+-...+.|..++..+++..
T Consensus       258 ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          258 LYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             EEEEETTTTEEEEEETTTCCSC
T ss_pred             EEEecCCCCeEEEEEccCCCcc
Confidence            5555557788888886666543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.81  E-value=1.5e-05  Score=70.43  Aligned_cols=189  Identities=7%  Similarity=-0.053  Sum_probs=115.6

Q ss_pred             eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEeC---C--eEEEEEcCCC
Q 014007          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE---Q--KIFVYNFADL  204 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d---~--~i~i~d~~~~  204 (432)
                      .....+++++++.++++...+     +.|..||... +....+.....+.++++.+++++++++   +  .|..+|..++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~-----~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEV-----GEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTT-----TEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCC-----CeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence            456678888888777776555     8999999654 444445556678999999999877653   2  3777787777


Q ss_pred             eeeEEEeeccC-CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee--e---------ccCCceeEEEEcCCCCE
Q 014007          205 KLLHQIETIAN-PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--M---------AHDSRIACFALTQDGQL  272 (432)
Q Consensus       205 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~---------~~~~~i~~~~~sp~~~~  272 (432)
                      +.......... ....++..+ +..++++  ...++.|.++|.........  .         ..-.....+  +|++++
T Consensus       106 ~~~~~~~~~~~~~~~g~~~~~-~~~~~v~--d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          106 TVETLLTLPDAIFLNGITPLS-DTQYLTA--DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             CEEEEEECTTCSCEEEEEESS-SSEEEEE--ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             eEEEEEeCCCccccCcccccC-CCcEEEE--ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            65433322111 112233333 3334433  23468888888765321111  0         111234455  788876


Q ss_pred             EEEEc-CCCceEEEEECCC-Cce--EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          273 LATSS-TKGTLVRIFNTLD-GTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       273 l~~~~-~dg~~i~vwd~~~-~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      |+.+. ..+. |+.||+.. ++.  ...+...   .....++++++|+++++....+.|.++|..
T Consensus       181 lyv~d~~~~~-I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          181 LYVSNTEKML-LLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEEEETTTTE-EEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             EEEEeCCCCE-EEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            65554 4566 99999864 332  2222211   245678999999877776677889999864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.79  E-value=2.7e-05  Score=71.11  Aligned_cols=237  Identities=7%  Similarity=-0.045  Sum_probs=146.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ  165 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~  165 (432)
                      .-.|.+..+ ..+|+.+..+.|+.++++.....  ....  .......++|++ ++.++.+....     +.|+.++...
T Consensus        78 ~~~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~--~~~~--~~~~~~gl~~d~~~~~ly~~D~~~-----~~I~r~~~~g  147 (386)
T 3v65_B           78 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYT--LLLN--NLENAIALDFHHRRELVFWSDVTL-----DRILRANLNG  147 (386)
T ss_dssp             SSCEEECSS-CCEEEEECBSCEEEECTTSCCCE--EEEC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTS
T ss_pred             CCeECCccc-cceeEeecCccceeeccCCCcEE--EEec--CCCccEEEEEecCCCeEEEEeCCC-----CcEEEEecCC
Confidence            345655555 45666676677888888765433  2222  334577888885 45555555555     8999999876


Q ss_pred             CceeEEee-cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCc
Q 014007          166 SRCIGELS-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (432)
Q Consensus       166 ~~~~~~~~-~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  240 (432)
                      +.....+. .......+++.+. +.+.++   .+.|.+.++........+.........++++|.+..++++-.+ ..+.
T Consensus       148 ~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~-~~~~  226 (386)
T 3v65_B          148 SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NTPR  226 (386)
T ss_dssp             CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS-SSCE
T ss_pred             CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC-CCCE
Confidence            65433333 3345678899875 443333   5688888876433222222222344678999988887766422 2378


Q ss_pred             EEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE
Q 014007          241 VRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (432)
Q Consensus       241 i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  318 (432)
                      |..++++......+. ..-.....|+|+|++..|+.+ ...+. |..+|+..... ..+... .......|++ ..+.++
T Consensus       227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~-I~~~d~dG~~~-~~~~~~-~~~~P~giav-~~~~ly  302 (386)
T 3v65_B          227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHR-KAVISQ-GLPHPFAITV-FEDSLY  302 (386)
T ss_dssp             EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE-EEEECTTSCSC-EEEECS-SCSSEEEEEE-ETTEEE
T ss_pred             EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE-EEEEeCCCCee-EEEEEC-CCCCceEEEE-ECCEEE
Confidence            888998875554443 334457899999866655554 44566 99999754333 333321 2245678888 345555


Q ss_pred             EEEeCCCeEEEEEecCCCCC
Q 014007          319 AVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       319 ~~~~~dg~i~iwd~~~~~~~  338 (432)
                      .+-...+.|..++..+++..
T Consensus       303 ~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          303 WTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             EEETTTTEEEEEETTTCCSC
T ss_pred             EeeCCCCeEEEEECCCCcce
Confidence            56667888998886666543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.79  E-value=1.8e-05  Score=79.65  Aligned_cols=235  Identities=11%  Similarity=0.043  Sum_probs=144.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc----cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      ...|.++...++|.+.+... +++.+|+..+.+........    ......|.++....++.+.++...      +-|.+
T Consensus       210 ~~~i~~i~~d~~g~lwigt~-~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~------~Gl~~  282 (781)
T 3v9f_A          210 GNDVRCIYKDTNGNIWIGTS-KGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL------NGIMI  282 (781)
T ss_dssp             CSSEEEEEECTTCCEEEEET-TEEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS------SCEEE
T ss_pred             CCceeEEEEcCCCCEEEEeC-CcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC------CCeEE
Confidence            35799999999888766554 49999997665433111100    012456888888888776665543      46888


Q ss_pred             EeCCCCceeEEe--------------e-cCCceEEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEee----------c
Q 014007          161 WDDHQSRCIGEL--------------S-FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIET----------I  213 (432)
Q Consensus       161 wd~~~~~~~~~~--------------~-~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~----------~  213 (432)
                      +|..+++.....              . ....|.++...++|.+-+ + ++-|..++..+.... .+..          .
T Consensus       283 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~  361 (781)
T 3v9f_A          283 LDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLS  361 (781)
T ss_dssp             EETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCS
T ss_pred             ECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcce-eeccCccccccCCCC
Confidence            887765432111              0 245689999888876555 5 778999987654322 2211          1


Q ss_pred             cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee----ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM----AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (432)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~----~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~  289 (432)
                      ...|.++....++ .+++++   .++-|..||..++....+.    .....|.++...++|.+. .|+.++. |..+|..
T Consensus       362 ~~~v~~i~~d~~g-~lWigt---~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~G-l~~~~~~  435 (781)
T 3v9f_A          362 NKVVSSVCDDGQG-KLWIGT---DGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGN-ISYYNTR  435 (781)
T ss_dssp             SSCEEEEEECTTS-CEEEEE---BSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEE-EEEECSS
T ss_pred             CcceEEEEEcCCC-CEEEEe---CCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCC-EEEEcCC
Confidence            2345555555554 355543   4567888988765443331    234678999988888754 5666666 9999987


Q ss_pred             CCceEEEEEe-CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          290 DGTLLQEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       290 ~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +++.. .+.. ......|.++...++|.+.+ |+. +.|..||..+++
T Consensus       436 ~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          436 LKKFQ-IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKK  480 (781)
T ss_dssp             SCEEE-ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSS
T ss_pred             CCcEE-EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCe
Confidence            76543 2321 11235799999988887555 444 568899987765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.79  E-value=3.4e-05  Score=70.46  Aligned_cols=174  Identities=10%  Similarity=-0.009  Sum_probs=114.9

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      ..|+.+++..............+.+++|.+.+. ++.+   .+.|+.+++........+.........+++.+.++.+++
T Consensus        96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~  175 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  175 (386)
T ss_dssp             SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred             ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEE
Confidence            578888887666555555556788999997544 4444   578999998765443333322334457899988888877


Q ss_pred             EeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEc-CC-CceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007          232 VCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS-TK-GTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~d-g~~i~vwd~~~~~~~~~~~~~~~~~~i~~  308 (432)
                      +-  ...+.|.+.+++......+. ..-.....++++|.+..|+... .. +. |..+++... ....+... .-.....
T Consensus       176 ~d--~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~-I~r~~~dG~-~~~~~~~~-~~~~PnG  250 (386)
T 3v65_B          176 TD--SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGS-GRRIIADT-HLFWPNG  250 (386)
T ss_dssp             EE--TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSC-SCEEEECS-SCSCEEE
T ss_pred             Ec--CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE-EEEEeCCCC-CcEEEEEC-CCCCeee
Confidence            64  34678888888775544433 3335678999998766555544 34 56 888887543 33333321 2245789


Q ss_pred             EEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007          309 LAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (432)
Q Consensus       309 ~~~s~~~~~l~~~~-~dg~i~iwd~~~  334 (432)
                      |+|+|++..|+.+. ..+.|..+|+..
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          251 LTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            99998777666654 567899988764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.76  E-value=5.8e-05  Score=67.92  Aligned_cols=174  Identities=11%  Similarity=-0.005  Sum_probs=113.9

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      ..|+..++........+.....+.+++|++....+. +   .+.|+.+++........+.........+++.+.++.+++
T Consensus        53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~  132 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  132 (349)
T ss_dssp             SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred             cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEE
Confidence            568888876655544444556688999997544444 4   578999998765433333322233457899988888877


Q ss_pred             EeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEE-cCC-CceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007          232 VCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATS-STK-GTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~-~~d-g~~i~vwd~~~~~~~~~~~~~~~~~~i~~  308 (432)
                      +-  ...+.|.+.+++......+. ..-.....++++|.+..|+.. ... +. |..+++... ....+... .-.....
T Consensus       133 ~d--~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~-I~r~~~dG~-~~~~~~~~-~~~~PnG  207 (349)
T 3v64_C          133 TD--SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGS-GRRIIADT-HLFWPNG  207 (349)
T ss_dssp             EE--TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSC-SCEESCCS-SCSCEEE
T ss_pred             Ec--CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCE-EEEEeCCCC-CcEEEEEC-CCCCcce
Confidence            64  34678999998876544443 334567899999965555444 444 66 888887543 33333211 2245789


Q ss_pred             EEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007          309 LAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (432)
Q Consensus       309 ~~~s~~~~~l~~~~-~dg~i~iwd~~~  334 (432)
                      |+++|++..|..+. ..+.|..+|+..
T Consensus       208 la~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          208 LTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            99998777666654 567899998864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.75  E-value=5.9e-05  Score=69.21  Aligned_cols=229  Identities=9%  Similarity=-0.072  Sum_probs=143.1

Q ss_pred             CEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEe
Q 014007           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQS----RCIGEL  172 (432)
Q Consensus        98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~  172 (432)
                      .+|+.+..+.|+..+++......  ...  ....+..++|++ ++.++.+....     +.|+.+++...    .....+
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~--~~~--~~~~~~~l~~d~~~~~lywsD~~~-----~~I~~~~~~g~~~~~~~~~~~  154 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTS--LIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVI  154 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEE--EEC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC------CCCEEEE
T ss_pred             ceeEEeccceeEEEccCCcceeE--ecc--ccCcceEEeeeeccCceEEEecCC-----CeEEEEEcccCCCCCcceEEE
Confidence            46777777779888887654432  222  445678888886 44455554444     88999997652    222233


Q ss_pred             e-cCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007          173 S-FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (432)
Q Consensus       173 ~-~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  247 (432)
                      . ......++++.+ .+.+..+   .+.|.+.++........+.........+++.|.+..++++-.+ ..+.|...+++
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~d  233 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN  233 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETT
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCC
Confidence            3 445678899987 4444444   5689999986544333333333345679999988877765433 45789999988


Q ss_pred             CCceeeee-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC
Q 014007          248 SKRTKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (432)
Q Consensus       248 ~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  325 (432)
                      ......+. ..-.....|++++++..|+.+. ..+. |..+|+........+.....-.....+++. .+.++.+-...+
T Consensus       234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE-EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence            76555443 3335788999998777666654 4556 999998644333333321112345677773 344555556778


Q ss_pred             eEEEEEecCCCCC
Q 014007          326 TVHVFNLKVNSGS  338 (432)
Q Consensus       326 ~i~iwd~~~~~~~  338 (432)
                      .|..+|..+++.+
T Consensus       312 ~V~~~~~~~G~~~  324 (400)
T 3p5b_L          312 AIFSANRLTGSDV  324 (400)
T ss_dssp             SEEEEESSSCCCC
T ss_pred             eEEEEEcCCCCce
Confidence            8999997777643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.74  E-value=2.3e-05  Score=75.52  Aligned_cols=228  Identities=7%  Similarity=0.007  Sum_probs=135.1

Q ss_pred             EEEEc-CCcEEEEEcCCCeeEEEeecccCcc--eeEEE-EeeeCCeEEEecCC-----CCCCCCCCeEEEEeCCCCceeE
Q 014007          100 FAAGT-DHGFRIYNCDPFREIFRRDFERGGG--IGVVE-MLFRCNILALVGGG-----PDPQYPLNKVMIWDDHQSRCIG  170 (432)
Q Consensus       100 l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~--~~v~~-~~~~~~~~~~~s~~-----~d~~~~~~~v~iwd~~~~~~~~  170 (432)
                      |++++ ++.|.-+|..+++......+. .+.  ..+.. .... ++..++..+     .+     +.|+.+|..+|+.+.
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~-~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~-----g~v~A~D~~TG~~~W  196 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENS-DIKVGSTLTIAPYVV-KDKVIIGSSGAELGVR-----GYLTAYDVKTGEQVW  196 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEE-TTEEEECCBCGGGTCC-----CEEEEEETTTCCEEE
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCC-CCCccceeecCCEEE-CCEEEEEecccccCCC-----CeEEEEECCCCcEEE
Confidence            55665 555888998888887665543 111  01111 1112 345555443     25     899999999999988


Q ss_pred             EeecCCce---------------------------------------EEEEEecCccEEE--e-C---------------
Q 014007          171 ELSFRSEV---------------------------------------RSVKLRRDRIIVV--L-E---------------  193 (432)
Q Consensus       171 ~~~~~~~v---------------------------------------~~~~~~~~~~~~~--~-d---------------  193 (432)
                      .+....+.                                       ..+++.++..+++  + +               
T Consensus       197 ~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y  276 (599)
T 1w6s_A          197 RAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKW  276 (599)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccc
Confidence            87732211                                       1245555544443  2 2               


Q ss_pred             -CeEEEEEcCCCeeeEEEeeccCCc------ce-EEEe---cCCCcEEEEeecCCCCcEEEEEccCCceeeeec------
Q 014007          194 -QKIFVYNFADLKLLHQIETIANPK------GL-CAVS---QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA------  256 (432)
Q Consensus       194 -~~i~i~d~~~~~~~~~~~~~~~~~------~~-~~~~---~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~------  256 (432)
                       +.|..+|.++|+.+..++......      .. +.+.   .+|+..-++..++.+|.+.++|.+++++..-..      
T Consensus       277 ~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  356 (599)
T 1w6s_A          277 TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN  356 (599)
T ss_dssp             SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             cceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence             379999999999988776543211      11 2222   455422222234589999999988865432111      


Q ss_pred             --------cCCce--------------------------eEEEEcCCCCEEEEEc-------------------------
Q 014007          257 --------HDSRI--------------------------ACFALTQDGQLLATSS-------------------------  277 (432)
Q Consensus       257 --------~~~~i--------------------------~~~~~sp~~~~l~~~~-------------------------  277 (432)
                              ...++                          ..++++|+..++++..                         
T Consensus       357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  436 (599)
T 1w6s_A          357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL  436 (599)
T ss_dssp             SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence                    00111                          2456777666554421                         


Q ss_pred             --------------CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          278 --------------TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       278 --------------~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                                    .+|. |.-||+.+++.+......   .+...-.+...+.+++.++.||.|+.||.++++.+
T Consensus       437 ~~~~~p~~~~~~~~~~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          437 NMYPGPKGDRQNYEGLGQ-IKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             EEEECTTSBTTTTBCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             eeccCCcCCcccCCCcCe-EEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence                          3467 999999999998887642   22221112235667777999999999999999843

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.67  E-value=2.5e-05  Score=75.30  Aligned_cols=140  Identities=11%  Similarity=0.125  Sum_probs=85.9

Q ss_pred             CeEEEEEcCCCeeeEEEeeccCC------cc-eEEEe---cCCCcEEEEeecCCCCcEEEEEccCCceee-eeccC----
Q 014007          194 QKIFVYNFADLKLLHQIETIANP------KG-LCAVS---QGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHD----  258 (432)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~------~~-~~~~~---~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~----  258 (432)
                      +.|..+|..+|+.+..++.....      .. .+.+.   .+|+..-++..++.+|.++++|..++++.. +....    
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            47999999999998877642211      11 12222   356532222234689999999988755421 11110    


Q ss_pred             ---------Cc--------------------------------eeEEEEcCCCCEEEEEc--------------------
Q 014007          259 ---------SR--------------------------------IACFALTQDGQLLATSS--------------------  277 (432)
Q Consensus       259 ---------~~--------------------------------i~~~~~sp~~~~l~~~~--------------------  277 (432)
                               .+                                -..++++|+..++++..                    
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence                     00                                01356677655555432                    


Q ss_pred             -------------CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007          278 -------------TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       278 -------------~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  337 (432)
                                   .+|. |.-||+.+++.+.+....   .++..-.....+.+++.++.||.|+.||.++++.
T Consensus       451 ~g~~~~~~p~~~~~~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGS-LRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             CCEEEEEEESCSSCSEE-EEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             eccceeecCCCCCCcce-EEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence                         2577 999999999998887743   2222211222466777899999999999999984

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.66  E-value=7e-05  Score=63.43  Aligned_cols=198  Identities=11%  Similarity=0.108  Sum_probs=128.9

Q ss_pred             eecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCCCceeEEeec--CCceEEEEEecCccEEEe---CCe
Q 014007          122 RDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRRDRIIVVL---EQK  195 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~---d~~  195 (432)
                      +.+. +-...+..++++++. .+++..+.+     +.|...|.. ++.++.+..  .....+|++.+++.++++   ++.
T Consensus        20 ~~l~-g~~~~lSGla~~~~~~~L~aV~d~~-----~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~   92 (255)
T 3qqz_A           20 KEIA-GITNNISSLTWSAQSNTLFSTINKP-----AAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYA   92 (255)
T ss_dssp             EECT-TCCSCEEEEEEETTTTEEEEEEETT-----EEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTE
T ss_pred             eECC-CcccCcceeEEeCCCCEEEEEECCC-----CeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCc
Confidence            3454 444578899999753 445545556     899999987 888888863  367889999999988664   568


Q ss_pred             EEEEEcCCCee---eEEEee------ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC----Cceeeee-------
Q 014007          196 IFVYNFADLKL---LHQIET------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIM-------  255 (432)
Q Consensus       196 i~i~d~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~----~~~~~~~-------  255 (432)
                      +.++++.....   +.....      .......+++++.++.++++.   +.....+|.++.    ..+..+.       
T Consensus        93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~---E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~  169 (255)
T 3qqz_A           93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK---EKNPIEVYKVNGLLSSNELHISKDKALQRQ  169 (255)
T ss_dssp             EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE---ESSSEEEEEEESTTCSSCCEEEECHHHHHT
T ss_pred             EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE---CcCCceEEEEcccccCCceeeecchhhccc
Confidence            99998765432   222221      122346799999998888765   223344555442    1222221       


Q ss_pred             ccCCceeEEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCC-------cCceEEEEECCCCCEEEEEeCCCeE
Q 014007          256 AHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-------RAEIYSLAFSSNAQWLAVSSDKGTV  327 (432)
Q Consensus       256 ~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i  327 (432)
                      .+-..+.+++++|.. ++++....... |.++|. +++.+..+.....       -...-.|+|.++|++ +..++.+.+
T Consensus       170 ~~~~d~S~l~~dp~tg~lliLS~~s~~-L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~  246 (255)
T 3qqz_A          170 FTLDDVSGAEFNQQKNTLLVLSHESRA-LQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRF  246 (255)
T ss_dssp             CCSSCCCEEEEETTTTEEEEEETTTTE-EEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEE
T ss_pred             cccCCceeEEEcCCCCeEEEEECCCCe-EEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceE
Confidence            123467899999955 45555555555 889985 5777766664310       125689999999984 455777877


Q ss_pred             EEEEe
Q 014007          328 HVFNL  332 (432)
Q Consensus       328 ~iwd~  332 (432)
                      +.|.-
T Consensus       247 y~f~~  251 (255)
T 3qqz_A          247 YRFTP  251 (255)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=5.9e-05  Score=75.92  Aligned_cols=237  Identities=12%  Similarity=0.012  Sum_probs=147.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEee------cccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD------FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      ....|.++...++|.+.+...++||..|+...........      ...-....|.++....++.+.++...      +-
T Consensus       311 ~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~------~G  384 (781)
T 3v9f_A          311 SNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDG------GG  384 (781)
T ss_dssp             SSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBS------SC
T ss_pred             CCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCC------Cc
Confidence            3567999999999987665558889999876443221110      01113356888888876665554322      56


Q ss_pred             EEEEeCCCCceeEEe---e-cCCceEEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEee---ccCCcceEEEecCCCc
Q 014007          158 VMIWDDHQSRCIGEL---S-FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIET---IANPKGLCAVSQGVGS  228 (432)
Q Consensus       158 v~iwd~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  228 (432)
                      |..||..++......   . ....|.++...+++.+.+ + ++.|..+|..+++.. .+..   ....+.++....++ .
T Consensus       385 l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g-~  462 (781)
T 3v9f_A          385 INVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNK-K  462 (781)
T ss_dssp             EEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTS-E
T ss_pred             EEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCC-C
Confidence            888997655332211   1 346789998887777665 4 478999998776543 2221   22345555555544 3


Q ss_pred             EEEEeecCCCCcEEEEEccCCceeeeecc------CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC--
Q 014007          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAH------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG--  300 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~--  300 (432)
                      +++++   . +.|..+|..++....+...      ...|.++...++|.+.+ |+.++. |..||..+++. ..+...  
T Consensus       463 lwigt---~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~G-l~~~~~~~~~~-~~~~~~~~  535 (781)
T 3v9f_A          463 IWIGT---H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGG-VGIYTPDMQLV-RKFNQYEG  535 (781)
T ss_dssp             EEEEE---T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSC-EEEECTTCCEE-EEECTTTT
T ss_pred             EEEEE---C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCC-EEEEeCCCCeE-EEccCCCC
Confidence            44443   3 5688899887655444321      35789999999987554 555444 88899766543 334311  


Q ss_pred             CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      .....|.++...++|.+.++. .+|.|..||..+.+
T Consensus       536 l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          536 FCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD  570 (781)
T ss_dssp             CSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred             CCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence            123568999999998866554 46655888877654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.65  E-value=7.2e-05  Score=66.25  Aligned_cols=228  Identities=10%  Similarity=-0.025  Sum_probs=140.3

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCceeE-Eee-cC
Q 014007           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIG-ELS-FR  175 (432)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~-~~~-~~  175 (432)
                      +|+.+..+.|+.++++.........+.  .......+.|++. +.++.+....     +.|..++...+.... .+. .-
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~ld~d~~~~~lyw~D~~~-----~~I~r~~~~g~~~~~~~~~~~l   78 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVG--GLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSGL   78 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEE--EEEEEEEEEEEGGGTEEEEEETTT-----TEEEEEETTSSSCCCEEEEECC
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEec--CCCccEEEEEEeCCCEEEEEECCC-----CcEEEEEccCCCceEEEEcCCC
Confidence            566676677999998765322112222  3345678888863 4455554444     899999987663222 222 33


Q ss_pred             CceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007          176 SEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (432)
Q Consensus       176 ~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~  251 (432)
                      ....++++.+. +.+..+   .+.|.++++........+.........+++.|.+..++++-.+ ..+.|..++++....
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~  157 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSR  157 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCe
Confidence            56778999874 444444   5689999976432222222233344678999987777765422 467888888887554


Q ss_pred             eeee-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007          252 KFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (432)
Q Consensus       252 ~~~~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  329 (432)
                      ..+. ..-.....++++|++..|+.+. ..+. |..+|+.. .....+... .......+++.. +.++.+-...+.|..
T Consensus       158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~-I~~~d~dG-~~~~~~~~~-~~~~P~glav~~-~~lywtd~~~~~V~~  233 (318)
T 3sov_A          158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDG-TNRQAVVKG-SLPHPFALTLFE-DILYWTDWSTHSILA  233 (318)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTS-CSCEEEECS-CCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCccEEEEeccCCEEEEEECCCCE-EEEEcCCC-CceEEEecC-CCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence            4432 2334578999999766665554 4566 99999754 333334321 224567788753 344555557789999


Q ss_pred             EEecCCCCC
Q 014007          330 FNLKVNSGS  338 (432)
Q Consensus       330 wd~~~~~~~  338 (432)
                      ++..+++..
T Consensus       234 ~~~~~G~~~  242 (318)
T 3sov_A          234 CNKYTGEGL  242 (318)
T ss_dssp             EETTTCCSC
T ss_pred             EECCCCCce
Confidence            998777643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.62  E-value=0.00029  Score=64.58  Aligned_cols=175  Identities=7%  Similarity=-0.047  Sum_probs=115.9

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcCCC----eeeEEEeeccCCcceEEEecCCC
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADL----KLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                      ..|+..++........+.....+.+++|++....++ +   .+.|+.+++...    .....+.........+++.+.++
T Consensus        92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~  171 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  171 (400)
T ss_dssp             TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred             ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence            688999987766555555667889999998544443 3   578999988652    12222222333445789998777


Q ss_pred             cEEEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEc-C-CCceEEEEECCCCceEEEEEeCCCcC
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS-T-KGTLVRIFNTLDGTLLQEVRRGADRA  304 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~-dg~~i~vwd~~~~~~~~~~~~~~~~~  304 (432)
                      .++++-  ...+.|.+.+++......+. ..-.....|+++|.+.+|+... . .+. |...++... ....+... .-.
T Consensus       172 ~lY~~d--~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~-I~~~~~dG~-~~~~~~~~-~l~  246 (400)
T 3p5b_L          172 NIYWTD--SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGV-DIYSLVTE-NIQ  246 (400)
T ss_dssp             EEEEEE--TTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC-EEEEETTSC-SCEEEECS-SCS
T ss_pred             ceEEEE--CCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE-EEEEeCCCC-ccEEEEEC-CCC
Confidence            877654  35688999999886655443 3345578999999666665544 2 367 999997543 33333321 225


Q ss_pred             ceEEEEECCCCCEEEEEe-CCCeEEEEEecCC
Q 014007          305 EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVN  335 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  335 (432)
                      ....|++++++..|+.+. ..+.|..+|+...
T Consensus       247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            679999998877777665 5678999998653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.60  E-value=9.4e-05  Score=68.56  Aligned_cols=148  Identities=11%  Similarity=0.043  Sum_probs=91.0

Q ss_pred             EEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEE-EeCC-------eEEEEEcC
Q 014007          132 VVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIV-VLEQ-------KIFVYNFA  202 (432)
Q Consensus       132 v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~d~-------~i~i~d~~  202 (432)
                      ...++++| +...|...+..     +.|+.+|+..+..............+++++++..+ ++|.       .+..++. 
T Consensus       139 P~~lavdp~~~g~Lyv~d~~-----~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-  212 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQ-----HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-  212 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBT-----EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred             CCEEEECCCCCCeEEEEeCC-----CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence            35677786 23333333333     68999998776654444456678899999999844 4432       3444443 


Q ss_pred             CCeee--EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec--cCCceeEEEEcCCCCEEEEE-c
Q 014007          203 DLKLL--HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQLLATS-S  277 (432)
Q Consensus       203 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~-~  277 (432)
                      .+...  ..+.. ......++++|+...++++-  ..++.|..++........+..  .......++|+|+|++|+.+ .
T Consensus       213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d--~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          213 ESGFKVITELTK-GQNCNGAETHPINGELYFNS--WNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEE--TTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             CCceeeeeeecc-CCCceEEEEeCCCCEEEEEE--CCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence            33222  23332 23345788999655666553  356889999988765533322  22457899999999955554 4


Q ss_pred             CCCceEEEEECC
Q 014007          278 TKGTLVRIFNTL  289 (432)
Q Consensus       278 ~dg~~i~vwd~~  289 (432)
                      ..+. |+.++..
T Consensus       290 ~~~~-I~~~~~d  300 (430)
T 3tc9_A          290 NQHY-ILRSDYD  300 (430)
T ss_dssp             TTTE-EEEEEEE
T ss_pred             CCCE-EEEEeCC
Confidence            5566 9988764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.58  E-value=3.4e-06  Score=83.08  Aligned_cols=239  Identities=7%  Similarity=-0.060  Sum_probs=127.6

Q ss_pred             EEEEcC-CCCEEEEEcC-C-----------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           90 HISFNQ-DHGCFAAGTD-H-----------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        90 ~~~~s~-~~~~l~~~~~-~-----------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ++++.+ ++++++.|+. .           .+.+||..+.+......+...+.......++..++.+++.|+.+    ..
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~----~~  265 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND----AK  265 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS----TT
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC----CC
Confidence            556677 8888887752 1           27888887665432223321222333345556666666666633    16


Q ss_pred             eEEEEeCCCCceeEE--eecCCceEEEEEecCccEEEeC---------CeEEEEEcCCCeeeEEE----eeccCCcceEE
Q 014007          157 KVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQI----ETIANPKGLCA  221 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~----~~~~~~~~~~~  221 (432)
                      .+.+||..+++-...  +.....-.+++..+++++++..         ..+.+||..+.+-...-    ...........
T Consensus       266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~  345 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL  345 (656)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred             ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccce
Confidence            899999887643322  2222223455666677777643         35899999876532210    00000000111


Q ss_pred             EecCCCcEEEEeecC--------CCCcEEEEEccCCceee-eeccC---------CceeEEEEc-CCCCEEEEEcCCC--
Q 014007          222 VSQGVGSLVLVCPGL--------QKGQVRVEHYASKRTKF-IMAHD---------SRIACFALT-QDGQLLATSSTKG--  280 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~--------~d~~i~i~d~~~~~~~~-~~~~~---------~~i~~~~~s-p~~~~l~~~~~dg--  280 (432)
                      +..++ .+++. +|.        ....+..||..+..-.. ...+.         ..-.++.|. .++++++.|+.++  
T Consensus       346 ~~~~~-~iyv~-Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~  423 (656)
T 1k3i_A          346 YRSDN-HAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ  423 (656)
T ss_dssp             GTTTC-SCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred             eecCC-ceEEE-ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence            11222 22222 221        23456778877643221 11111         122344444 3788888888542  


Q ss_pred             ---------ceEEEEECCCCceEEEE--EeCCCcCceEEEEECCCCCEEEEEeCC-----------CeEEEEEecCCC
Q 014007          281 ---------TLVRIFNTLDGTLLQEV--RRGADRAEIYSLAFSSNAQWLAVSSDK-----------GTVHVFNLKVNS  336 (432)
Q Consensus       281 ---------~~i~vwd~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~  336 (432)
                               . |.+||..+.+.....  ... ....-.++...|+|++++.|+.+           ..+.+||..+.+
T Consensus       424 ~~~~~~~~~~-v~~yd~~~~~W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          424 DSDATTNAHI-ITLGEPGTSPNTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             SSBCCCCEEE-EECCSTTSCCEEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCCcCCcceE-EEcCCCCCCCeeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence                     5 788888776654332  111 11123455667899999998854           468888887754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.56  E-value=0.00022  Score=70.98  Aligned_cols=229  Identities=9%  Similarity=-0.074  Sum_probs=140.2

Q ss_pred             CEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEe
Q 014007           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQS----RCIGEL  172 (432)
Q Consensus        98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~  172 (432)
                      .+|+.+....|+..+++.....  ....  ....+..++++. ++.++++....     +.|+.+++...    .....+
T Consensus       396 p~Ll~an~~~Ir~i~l~~~~~~--~l~~--~~~~~~gl~~d~~~~~lY~sD~~~-----~~I~~~~l~g~~~~~~~~~vi  466 (791)
T 3m0c_C          396 AYLFFTNRHEVRKMTLDRSEYT--SLIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVI  466 (791)
T ss_dssp             CEEEEECBSSEEEECTTSCCCE--EEEC--SCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEE
T ss_pred             cccccccccceeEeeccCCcce--eeec--CCCceEEEeecccCCeeEEeeccc-----eeEEEEeccCCCCCcceeEEE
Confidence            3666666677888887655433  2222  345567888876 44555555545     78999998653    222333


Q ss_pred             e-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007          173 S-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (432)
Q Consensus       173 ~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  247 (432)
                      . ......+|++.+.+..|+ +   .+.|.+.++........+.........+++.|....+|++-.| ..+.|.+.+++
T Consensus       467 ~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~d  545 (791)
T 3m0c_C          467 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN  545 (791)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETT
T ss_pred             ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecC
Confidence            3 345677899997664444 3   5789999986544333333333445689999988888776433 34789999988


Q ss_pred             CCceeeeec-cCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC
Q 014007          248 SKRTKFIMA-HDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (432)
Q Consensus       248 ~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  325 (432)
                      ......+.. .-.....|++++.+..|+.+. .... |..+|+........+.....-.....|++.. ++++++-...+
T Consensus       546 G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~-I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~  623 (791)
T 3m0c_C          546 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE  623 (791)
T ss_dssp             SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred             CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc-EEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence            866555443 335788999998666666554 4456 9999985544443333211123456777633 33444444678


Q ss_pred             eEEEEEecCCCCC
Q 014007          326 TVHVFNLKVNSGS  338 (432)
Q Consensus       326 ~i~iwd~~~~~~~  338 (432)
                      .|...|..+++.+
T Consensus       624 ~I~~~dk~tG~~~  636 (791)
T 3m0c_C          624 AIFSANRLTGSDV  636 (791)
T ss_dssp             EEEEEETTTCCCC
T ss_pred             EEEEEeCCCCcce
Confidence            8888887776543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.53  E-value=0.00018  Score=60.95  Aligned_cols=197  Identities=6%  Similarity=0.039  Sum_probs=122.4

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc-CCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      .+.+-.+.+..++|+|++..|.+.. +.+ |...|.. ++......+.  .....-.+++.+++.++++...+     +.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~--g~~D~EGIa~~~~g~~~vs~E~~-----~~   92 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD--FVKDLETIEYIGDNQFVISDERD-----YA   92 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS--SCSSEEEEEECSTTEEEEEETTT-----TE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC--CCCChHHeEEeCCCEEEEEECCC-----Cc
Confidence            3444556799999999877665544 433 7667766 4443223332  33556677788888887776666     88


Q ss_pred             EEEEeCCCCce---eEEee-------cCCceEEEEEecCccEEE-e--CC--eEEEEEc-CCCeeeEEEee-------cc
Q 014007          158 VMIWDDHQSRC---IGELS-------FRSEVRSVKLRRDRIIVV-L--EQ--KIFVYNF-ADLKLLHQIET-------IA  214 (432)
Q Consensus       158 v~iwd~~~~~~---~~~~~-------~~~~v~~~~~~~~~~~~~-~--d~--~i~i~d~-~~~~~~~~~~~-------~~  214 (432)
                      +.++++.....   +....       .+....+++|++++..+. +  ..  .|+.|+- .....+..+..       ..
T Consensus        93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~  172 (255)
T 3qqz_A           93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL  172 (255)
T ss_dssp             EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred             EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence            99998765442   22222       234468999999874443 2  22  4555541 11112222211       12


Q ss_pred             CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccC---------CceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------SRIACFALTQDGQLLATSSTKGTLVRI  285 (432)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---------~~i~~~~~sp~~~~l~~~~~dg~~i~v  285 (432)
                      .....++++|...++++.+  .....+..+|.....+..+.-..         .....|+|.++|++. ..++.+. +++
T Consensus       173 ~d~S~l~~dp~tg~lliLS--~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~-~y~  248 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLS--HESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNR-FYR  248 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEE--TTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-EEETTTE-EEE
T ss_pred             CCceeEEEcCCCCeEEEEE--CCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-EEcCCce-EEE
Confidence            3457899999988888775  46788999998876544433221         256899999999854 4466666 777


Q ss_pred             EEC
Q 014007          286 FNT  288 (432)
Q Consensus       286 wd~  288 (432)
                      |.-
T Consensus       249 f~~  251 (255)
T 3qqz_A          249 FTP  251 (255)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.53  E-value=0.00018  Score=66.73  Aligned_cols=191  Identities=14%  Similarity=0.032  Sum_probs=113.9

Q ss_pred             EEEEeeeCC---eEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEeCC-------eEEEEEc
Q 014007          132 VVEMLFRCN---ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQ-------KIFVYNF  201 (432)
Q Consensus       132 v~~~~~~~~---~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~-------~i~i~d~  201 (432)
                      ...++++++   +.++++.. .     +.|+.+|..+++............++++++++.++++|.       .+..++.
T Consensus       141 P~gvavd~~s~~g~Lyv~D~-~-----~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQ-R-----DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECB-T-----SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred             CceEEEccccCCCEEEEEeC-C-----CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence            456777763   55444432 2     689999987776655444556689999999998666542       2333333


Q ss_pred             CCCee-eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeec--cCCceeEEEEcCCCCEEEEEc
Q 014007          202 ADLKL-LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--HDSRIACFALTQDGQLLATSS  277 (432)
Q Consensus       202 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~--~~~~i~~~~~sp~~~~l~~~~  277 (432)
                      ..+.. ...+. .......++++++...++++.  ..++.|+.+|..++.. ..+..  ....-..++|+|+|++|+.+.
T Consensus       215 ~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d--~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          215 ASGFTERLSLC-NARGAKTCAVHPQNGKIYYTR--YHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             GGTTCCEEEEE-ECSSBCCCEECTTTCCEEECB--TTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             CCCeecccccc-ccCCCCEEEEeCCCCeEEEEE--CCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            22111 11222 223334688999555666543  3568899999886554 33221  122334799999999555554


Q ss_pred             -CCCceEEEEECC--CCce--EEEEEeC-CC------------cCceEEEEE---------CCCCCEEEEEeCCCeEEEE
Q 014007          278 -TKGTLVRIFNTL--DGTL--LQEVRRG-AD------------RAEIYSLAF---------SSNAQWLAVSSDKGTVHVF  330 (432)
Q Consensus       278 -~dg~~i~vwd~~--~~~~--~~~~~~~-~~------------~~~i~~~~~---------s~~~~~l~~~~~dg~i~iw  330 (432)
                       ..+. |+.++..  +++.  ...+.+. ..            -.....+++         .++|.++++-...+.|+.+
T Consensus       292 ~~~~~-I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          292 NGKHC-IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             TTTTE-EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             CCCCE-EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence             4566 9998865  3322  1233221 00            123677999         7777777666677889888


Q ss_pred             Ee
Q 014007          331 NL  332 (432)
Q Consensus       331 d~  332 (432)
                      +.
T Consensus       371 ~~  372 (433)
T 4hw6_A          371 TP  372 (433)
T ss_dssp             CT
T ss_pred             CC
Confidence            74

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.53  E-value=0.0005  Score=61.83  Aligned_cols=231  Identities=14%  Similarity=0.176  Sum_probs=155.7

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEee-eCCeEEEecCCCCCCCCCCeEEEEeCCC-Cc
Q 014007           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQ-SR  167 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~~~~~~v~iwd~~~-~~  167 (432)
                      +.-.+|..+.+|.-....++|||+++........+.    ..|.-+.| +++...+++.        ..|+-|++.. ..
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~----e~VvfWkWis~~~l~lVT~--------taVyHWsi~~~s~  137 (494)
T 1bpo_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT----DDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQ  137 (494)
T ss_dssp             EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS----SCCCEEEEEETTEEEEECS--------SEEEEEESSSSCC
T ss_pred             eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC----CCceEEEecCCCeEEEEcC--------CeeEEecccCCCC
Confidence            456788888888887667999999988877544443    35667776 6677778876        6899999864 35


Q ss_pred             eeEEee-c----CCceEEEEEecCccEEEe----------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC--cE-
Q 014007          168 CIGELS-F----RSEVRSVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG--SL-  229 (432)
Q Consensus       168 ~~~~~~-~----~~~v~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-  229 (432)
                      +++.+. |    ...|..-..+++.++++.          .|.+.+|..+. +.-+.+++|......+.+.-+..  .+ 
T Consensus       138 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf  216 (494)
T 1bpo_A          138 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLF  216 (494)
T ss_dssp             CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEE
T ss_pred             chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEE
Confidence            666665 2    456777788888888772          57889999765 44456666654433332222211  11 


Q ss_pred             EEEeecCCCCcEEEEEccCCc-----e----e-eee---ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007          230 VLVCPGLQKGQVRVEHYASKR-----T----K-FIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~-----~----~-~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~  296 (432)
                      .++.-....+.++|.++....     .    . .+.   ...+-.-++..++.-..+..-+.-|. |++||+.++.++..
T Consensus       217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~-i~lyDleTgt~i~~  295 (494)
T 1bpo_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYM  295 (494)
T ss_dssp             EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEE
T ss_pred             EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce-EEEEecccceeeee
Confidence            122211223789998885420     0    1 111   12344568888888888888999999 99999999999987


Q ss_pred             EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      -+..  ...|..-+.+....-++.....|.|.--.++...
T Consensus       296 nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          296 NRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EECC--SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             eccc--CCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            7753  3667666666655566666789988888887765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.52  E-value=0.00013  Score=67.62  Aligned_cols=238  Identities=9%  Similarity=-0.002  Sum_probs=141.7

Q ss_pred             CCeEEEEEcCC--CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007           86 PTLLHISFNQD--HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        86 ~~v~~~~~s~~--~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      .....|+|+|+  +..|.++. .+.|+.++..++....  ..  ........+++++++.++++...... ....+...+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~--~~--~~~~~P~giavd~dG~lyVad~~~~~-~~~gv~~~~  213 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI--KT--TNIGQCADVNFTLNGDMVVVDDQSSD-TNTGIYLFT  213 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE--EC--CCCSCEEEEEECTTCCEEEEECCSCT-TSEEEEEEC
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE--ee--cCCCCccEEEECCCCCEEEEcCCCCc-ccceEEEEE
Confidence            34678999985  34444444 4559999986665432  22  24455778889998876655432100 001233343


Q ss_pred             CCCCce-eEEeecCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEE-eeccC-CcceEEEecCCCcEEEEeec
Q 014007          163 DHQSRC-IGELSFRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQI-ETIAN-PKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       163 ~~~~~~-~~~~~~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~g  235 (432)
                      ...+.. ...+........+++++ ++.+.++   ++.|+.+|..++.....+ ..... ....++++|+++.++++-  
T Consensus       214 ~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad--  291 (433)
T 4hw6_A          214 RASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY--  291 (433)
T ss_dssp             GGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE--
T ss_pred             CCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe--
Confidence            222211 11222334567788999 6776664   568999998777653333 22111 123599999998787764  


Q ss_pred             CCCCcEEEEEccC--Cce---eeeecc---------------CCceeEEEE---------cCCCCEEEEEcCCCceEEEE
Q 014007          236 LQKGQVRVEHYAS--KRT---KFIMAH---------------DSRIACFAL---------TQDGQLLATSSTKGTLVRIF  286 (432)
Q Consensus       236 ~~d~~i~i~d~~~--~~~---~~~~~~---------------~~~i~~~~~---------sp~~~~l~~~~~dg~~i~vw  286 (432)
                      ...+.|+.++++.  +.+   ..+.+.               -.....+++         .++|.++++-..++. |+.+
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~  370 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVL  370 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEE
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEE
Confidence            3568899988763  221   122221               123567999         778877777777777 9999


Q ss_pred             ECCCCceEEEEEeCCC----------------cCceEEEEEC-CCCCEEEEEeCCCeEEEEEec
Q 014007          287 NTLDGTLLQEVRRGAD----------------RAEIYSLAFS-SNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       287 d~~~~~~~~~~~~~~~----------------~~~i~~~~~s-~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      +. ++.. .++.+...                -.....|+++ ++|.++++=...++|+.++++
T Consensus       371 ~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          371 TP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            84 6644 34432111                1236789999 566666655677888888764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.51  E-value=9.1e-05  Score=68.66  Aligned_cols=237  Identities=10%  Similarity=0.103  Sum_probs=138.1

Q ss_pred             CeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeC
Q 014007           87 TLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        87 ~v~~~~~s~-~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      ....|+++| ++..|.++. .+.|+.++.+......  ..  ........+++++++. ++++...+... ...+..++ 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~--~~--~~~~~P~~ia~d~~G~~lyvad~~~~~~-~~~v~~~~-  211 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST--VY--SGLSKVRTICWTHEADSMIITNDQNNND-RPNNYILT-  211 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE--EE--CCCSCEEEEEECTTSSEEEEEECCSCTT-SEEEEEEE-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE--Ee--cCCCCcceEEEeCCCCEEEEEeCCCCcc-cceEEEEe-
Confidence            457889998 355555554 4458888887655432  22  2345577888998876 44444321000 01344444 


Q ss_pred             CCCcee--EEeecCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEEeecc-CCcceEEEecCCCcEEEEeecC
Q 014007          164 HQSRCI--GELSFRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPGL  236 (432)
Q Consensus       164 ~~~~~~--~~~~~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~  236 (432)
                      ..+...  ..+........++++| ++.++++   ++.|+.++...+.......... ..-..++++|+++.++++-  .
T Consensus       212 ~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d--~  289 (430)
T 3tc9_A          212 RESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV--V  289 (430)
T ss_dssp             GGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE--T
T ss_pred             CCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE--C
Confidence            333322  2333344567888999 6776664   5789999987765422222211 2345799999998777764  3


Q ss_pred             CCCcEEEEEccCC--c---eeeeecc---------------CCcee-EEEEc--------CCCCEEEEEcCCCceEEEEE
Q 014007          237 QKGQVRVEHYASK--R---TKFIMAH---------------DSRIA-CFALT--------QDGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       237 ~d~~i~i~d~~~~--~---~~~~~~~---------------~~~i~-~~~~s--------p~~~~l~~~~~dg~~i~vwd  287 (432)
                      ..+.|..++.+..  .   ...+.+.               -.... .++..        ++|.++++-..++. |+.++
T Consensus       290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~  368 (430)
T 3tc9_A          290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILT  368 (430)
T ss_dssp             TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEEC
T ss_pred             CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEEC
Confidence            5788999887642  1   1222211               01122 45553        44666666666677 99998


Q ss_pred             CCCCceEEEEEeC-----C--C--------cCceEEEEECCC-CCEEEEEeCCCeEEEEEec
Q 014007          288 TLDGTLLQEVRRG-----A--D--------RAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       288 ~~~~~~~~~~~~~-----~--~--------~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~  333 (432)
                       .+++.......+     .  .        -.....|+++++ +.++++-...+.|+.++++
T Consensus       369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence             566544333210     0  0        024789999995 5555555567788888764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.50  E-value=0.00051  Score=60.74  Aligned_cols=174  Identities=10%  Similarity=0.005  Sum_probs=112.9

Q ss_pred             CeEEEEeCCCCc--eeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeee-EEEeeccCCcceEEEecCCCc
Q 014007          156 NKVMIWDDHQSR--CIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       156 ~~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      ..|+.+++....  ....+.....+.+++|.+....+. +   .+.|+.+++..+... ..+.........+++.+.++.
T Consensus        13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~   92 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK   92 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTE
T ss_pred             CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCe
Confidence            689999987663  222222334577899998544333 3   578999998765322 222222234457899988887


Q ss_pred             EEEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEc--CCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007          229 LVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~~  305 (432)
                      ++++-  ...+.|.+++++......+. ........++++|.+.+|+...  ..+. |...++. |+....+... .-..
T Consensus        93 ly~~d--~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~-I~r~~~d-G~~~~~~~~~-~l~~  167 (318)
T 3sov_A           93 LYWTD--SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK-IERAGMD-GSSRFIIINS-EIYW  167 (318)
T ss_dssp             EEEEE--TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE-EEEEETT-SCSCEEEECS-SCSC
T ss_pred             EEEEE--CCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE-EEEEEcC-CCCeEEEEEC-CCCC
Confidence            77654  35688999999876554443 3445678999999765665554  2466 8888864 4433344321 2245


Q ss_pred             eEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007          306 IYSLAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (432)
Q Consensus       306 i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~  334 (432)
                      ...|++++++..|+.+. ..+.|..+|+..
T Consensus       168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            78999999777666664 677899999864

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.46  E-value=0.00075  Score=60.69  Aligned_cols=258  Identities=10%  Similarity=0.119  Sum_probs=164.9

Q ss_pred             cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecC
Q 014007          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD  186 (432)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  186 (432)
                      .|.|.|+.......++.+.  -...|    .+|....++--. .     ..+.++|+++.+.++.+.....|.--.|-.+
T Consensus        49 ~vvIiDl~~~~~~~rrpi~--AdsAI----MnP~~~iiALra-g-----~~lQiFnle~K~klks~~~~e~VvfWkWis~  116 (494)
T 1bpo_A           49 QVVIIDMNDPSNPIRRPIS--ADSAI----MNPASKVIALKA-G-----KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL  116 (494)
T ss_dssp             EEEEEETTSTTSCEEEECC--CSEEE----ECSSSSCEEEEE-T-----TEEEEEETTTTEEEEEEECSSCCCEEEEEET
T ss_pred             eEEEEECCCCCcceecccc--cceee----eCCCCcEEEEec-C-----CeEEEEchHHhhhhcceecCCCceEEEecCC
Confidence            3888898776555444443  22222    233333322221 2     7999999999999999997788888888766


Q ss_pred             ccE-EEeCCeEEEEEcCC-CeeeEEEeeccC--Ccc--eEEEecCCCcEEEEeec----CCCCcEEEEEccCCceeeeec
Q 014007          187 RII-VVLEQKIFVYNFAD-LKLLHQIETIAN--PKG--LCAVSQGVGSLVLVCPG----LQKGQVRVEHYASKRTKFIMA  256 (432)
Q Consensus       187 ~~~-~~~d~~i~i~d~~~-~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~g----~~d~~i~i~d~~~~~~~~~~~  256 (432)
                      ..+ ++++..|+-|++.. ..+.+.+.-|..  ...  ....+++.+.+++..-.    ...|.+.+|..+.+..+.+.+
T Consensus       117 ~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG  196 (494)
T 1bpo_A          117 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG  196 (494)
T ss_dssp             TEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECC
T ss_pred             CeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhee
Confidence            554 44799999999974 345555554432  222  34446666665543221    235788999999988888999


Q ss_pred             cCCceeEEEEcCCC---CEEEEEcCC---CceEEEEECCCC--------ceEEEEEe--CCCcCceEEEEECCCCCEEEE
Q 014007          257 HDSRIACFALTQDG---QLLATSSTK---GTLVRIFNTLDG--------TLLQEVRR--GADRAEIYSLAFSSNAQWLAV  320 (432)
Q Consensus       257 ~~~~i~~~~~sp~~---~~l~~~~~d---g~~i~vwd~~~~--------~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~  320 (432)
                      |...-..+.+.-+.   .+++.+...   +. ++|-++...        +....+..  ....+-..++..|+.-..+..
T Consensus       197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~k-Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv  275 (494)
T 1bpo_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  275 (494)
T ss_dssp             SEEEEEEEECTTCSSEEEEEEEEECSTTCCE-EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred             eeeeeEEEecCCCCCCceEEEEEEecCCCcE-EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence            97766655553221   234444332   56 899988542        11111111  111245678888888888999


Q ss_pred             EeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec
Q 014007          321 SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM  400 (432)
Q Consensus       321 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  400 (432)
                      -+.-|.|++||+.++.+                                   +..-+...+.|...+-.....=++....
T Consensus       276 iTK~G~i~lyDleTgt~-----------------------------------i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr  320 (494)
T 1bpo_A          276 ITKYGYIHLYDLETGTC-----------------------------------IYMNRISGETIFVTAPHEATAGIIGVNR  320 (494)
T ss_dssp             EETTSEEEEEETTTCCE-----------------------------------EEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             EecCceEEEEeccccee-----------------------------------eeeecccCCceEEecccCCCCcEEEEcc
Confidence            99999999999999984                                   3334445556666666666566667778


Q ss_pred             CCeEEEEEecCC
Q 014007          401 DGSFYRCQFDPV  412 (432)
Q Consensus       401 dg~v~iw~~~~~  412 (432)
                      .|.|.--.+|..
T Consensus       321 ~GqVl~v~v~e~  332 (494)
T 1bpo_A          321 KGQVLSVCVEEE  332 (494)
T ss_dssp             TCEEEEEEECTT
T ss_pred             CceEEEEEEccc
Confidence            888877666553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.46  E-value=1.8e-05  Score=79.05  Aligned_cols=242  Identities=11%  Similarity=0.032  Sum_probs=130.0

Q ss_pred             CeEEEEEc-CCCCEEEEEcCC------cEEEEEcCCC-eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           87 TLLHISFN-QDHGCFAAGTDH------GFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        87 ~v~~~~~s-~~~~~l~~~~~~------~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      .+...+|| |||++||.+.+.      .|+++|++++ +.. ...+.    .....+.|++++..|+....+..-....|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVS----GTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEE----EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-Ccccc----CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            67889999 999998876521      2999999887 522 11121    12346789998754443332211001368


Q ss_pred             EEEeCCCCce--eEEee--cCCceEEEEEecCccEEEe------CCeEEEEEcCCCe-ee--EEEee-ccCCcceEEEec
Q 014007          159 MIWDDHQSRC--IGELS--FRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLK-LL--HQIET-IANPKGLCAVSQ  224 (432)
Q Consensus       159 ~iwd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~-~~--~~~~~-~~~~~~~~~~~~  224 (432)
                      +++++.++..  ...+.  .......+.|+|||++++.      ...|+++|+.++. ..  ..+.. .......+.| .
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~-~  328 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM-H  328 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE-E
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee-e
Confidence            8899887642  23333  3344667899999998873      3478999987752 12  22221 1222222222 2


Q ss_pred             CCCcEEEEeecC--CCCcEEEEEccC-Cceee-eeccCC--ceeEEEEcCCCCEEEEEcCCCc-eEEEEEC-------CC
Q 014007          225 GVGSLVLVCPGL--QKGQVRVEHYAS-KRTKF-IMAHDS--RIACFALTQDGQLLATSSTKGT-LVRIFNT-------LD  290 (432)
Q Consensus       225 ~~~~~~~~~~g~--~d~~i~i~d~~~-~~~~~-~~~~~~--~i~~~~~sp~~~~l~~~~~dg~-~i~vwd~-------~~  290 (432)
                      .++.+++.+...  ....|..+|+.+ ..... +..+..  .+..+.+. .+.++++...++. .|+++|+       .+
T Consensus       329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~  407 (751)
T 2xe4_A          329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKA  407 (751)
T ss_dssp             TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCT
T ss_pred             eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccC
Confidence            377777665221  234666777764 33334 444444  34555554 3344555666664 1566675       34


Q ss_pred             CceEEEEEeCCCcCceEEEEE----CCCCC-EEEEEeCC---CeEEEEEecCCC
Q 014007          291 GTLLQEVRRGADRAEIYSLAF----SSNAQ-WLAVSSDK---GTVHVFNLKVNS  336 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~i~~~~~----s~~~~-~l~~~~~d---g~i~iwd~~~~~  336 (432)
                      ++.+..+... ....+..+.+    ++++. ++++.+..   ..++.+|+.+++
T Consensus       408 g~~~~~l~l~-~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          408 GTGLREVVME-EPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TTCCEECCCC-CSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             CccceEECCC-CceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            4413344321 1122344433    34655 44443322   467777776654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.44  E-value=0.00079  Score=65.41  Aligned_cols=227  Identities=7%  Similarity=-0.070  Sum_probs=144.2

Q ss_pred             CEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cC
Q 014007           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR  175 (432)
Q Consensus        98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~  175 (432)
                      .+|+.+..+.|+..++++........+.  .-.....++|++. +..+.+...+     +.|+.+++........+. ..
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~l~~d~~~~~lywtD~~~-----~~I~r~~~~g~~~~~v~~~g~   79 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPLT--GVKEASALDFDVTDNRIYWTDISL-----KTISRAFMNGSALEHVVEFGL   79 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCCC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSC
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEcC--CCCceEEEEEECCCCEEEEEECCC-----CeEEEEECCCCCcEEEEeCCC
Confidence            4677777777999999865443222232  3346778888874 5555555555     899999976554433343 23


Q ss_pred             CceEEEEEecCccEE-Ee---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007          176 SEVRSVKLRRDRIIV-VL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (432)
Q Consensus       176 ~~v~~~~~~~~~~~~-~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~  251 (432)
                      ....++++.+.+..+ .+   .+.|.+.++........+...-.....+++.|....++++-.| ..+.|...+++....
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~  158 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSER  158 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCce
Confidence            567889998754433 33   5689999986433222222222334679999987777765423 467888888888666


Q ss_pred             eeeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007          252 KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (432)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  330 (432)
                      ..+...-.....|++++++..|+.+. ..+. |..+|+..... ..+...  -.....+++.. +..+.+-...+.|...
T Consensus       159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~-I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~  233 (628)
T 4a0p_A          159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNL-IESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERA  233 (628)
T ss_dssp             EEEECSCSSEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCcceEEEccccCEEEEEECCCCE-EEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence            65555556788999999766666655 4556 99999865444 334332  23456788754 4444444467888888


Q ss_pred             EecCCCC
Q 014007          331 NLKVNSG  337 (432)
Q Consensus       331 d~~~~~~  337 (432)
                      |..+++.
T Consensus       234 dk~tg~~  240 (628)
T 4a0p_A          234 NKTSGQN  240 (628)
T ss_dssp             ETTTCCS
T ss_pred             ECCCCCc
Confidence            8766653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.43  E-value=0.0011  Score=66.01  Aligned_cols=175  Identities=9%  Similarity=-0.025  Sum_probs=115.8

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCc-cEEEe---CCeEEEEEcCCC----eeeEEEeeccCCcceEEEecCCC
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVL---EQKIFVYNFADL----KLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~---d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                      ..|+..++........+.....+.+|+|.+.. .++++   .+.|+.+++...    .....+.........+++.+.++
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~  483 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  483 (791)
T ss_dssp             SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCC
Confidence            56888887766555555566778899999854 44444   568999988652    22223332334456799999998


Q ss_pred             cEEEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEc-CC-CceEEEEECCCCceEEEEEeCCCcC
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS-TK-GTLVRIFNTLDGTLLQEVRRGADRA  304 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~d-g~~i~vwd~~~~~~~~~~~~~~~~~  304 (432)
                      .+|++-  ...+.|.+.+++......+. ..-.....|+++|.+.+|+... .. +. |.+.++. |.....+... .-.
T Consensus       484 ~LY~tD--~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~-I~~~~~d-G~~~~~lv~~-~l~  558 (791)
T 3m0c_C          484 NIYWTD--SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-NIQ  558 (791)
T ss_dssp             EEEEEE--TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-SCS
T ss_pred             cEEEEe--cCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCe-EEEEecC-CCceEEEEeC-CCC
Confidence            888764  45789999999886665554 3445688999999755555544 33 66 9999875 4444444422 225


Q ss_pred             ceEEEEECCCCCEEEEEe-CCCeEEEEEecCC
Q 014007          305 EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVN  335 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  335 (432)
                      ....|++++.+..|+.+. ..+.|..+++...
T Consensus       559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            689999998777776664 5668888888654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=0.00031  Score=65.40  Aligned_cols=247  Identities=6%  Similarity=-0.002  Sum_probs=141.5

Q ss_pred             CeEEEEEcC-CCCEEEEEc-C-CcEEEEEcCCCeeEEEeecccCcceeEEEEee-------eCCeE-EEecCCCCCC-CC
Q 014007           87 TLLHISFNQ-DHGCFAAGT-D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-------RCNIL-ALVGGGPDPQ-YP  154 (432)
Q Consensus        87 ~v~~~~~s~-~~~~l~~~~-~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~-~~~s~~~d~~-~~  154 (432)
                      ....|+|+| +...|.++. . +.|++.|.+....................++|       ++++. ++++...+.. ..
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            567899998 355455554 3 33888888766554322221112335788888       88876 4444332200 00


Q ss_pred             CCeEEEEeCCC-Ccee-----EEeecCCceEEEEEecC-ccEEEe---CCeEEEEEcC-------CCee-----------
Q 014007          155 LNKVMIWDDHQ-SRCI-----GELSFRSEVRSVKLRRD-RIIVVL---EQKIFVYNFA-------DLKL-----------  206 (432)
Q Consensus       155 ~~~v~iwd~~~-~~~~-----~~~~~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~-------~~~~-----------  206 (432)
                      ...|.+++... +...     ..+..-.....++++|+ +.+++.   ++.|+.+|+.       ++..           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence            02366776433 2221     22221224457788994 454443   6789999987       5543           


Q ss_pred             eEE-Eeec-cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--Cce---eeeecc---C------------Ccee-E
Q 014007          207 LHQ-IETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRT---KFIMAH---D------------SRIA-C  263 (432)
Q Consensus       207 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~---~~~~~~---~------------~~i~-~  263 (432)
                      ... +... ...-..++++|+++.++++-  ...+.|+.++.+.  +.+   ..+.+.   .            .... .
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD--~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGV--INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEE--TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEe--CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence            112 2221 22345799999998777764  4578888877654  222   222221   0            1234 4


Q ss_pred             EEEc-------CCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC----------------------cCceEEEEECCC
Q 014007          264 FALT-------QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----------------------RAEIYSLAFSSN  314 (432)
Q Consensus       264 ~~~s-------p~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~----------------------~~~i~~~~~s~~  314 (432)
                      ++..       ++|.++++-..+.. |+.++ .++. +.++-+...                      -.....|+++++
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~r-Ir~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~  454 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFC-VRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV  454 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTE-EEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred             EEEccccccccCCCeEEEEECCCCE-EEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence            4554       46676666667777 99998 5674 445543210                      024678999997


Q ss_pred             -CCEEEEEeCCCeEEEEEecCCCCC
Q 014007          315 -AQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       315 -~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                       |.++++=....+|+.++++.....
T Consensus       455 ~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          455 KEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             TTEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCEEEEEeCCCCEEEEEECCCCccc
Confidence             666666567889999999876643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.41  E-value=8.4e-05  Score=65.42  Aligned_cols=182  Identities=14%  Similarity=0.213  Sum_probs=117.5

Q ss_pred             EEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc----c---E-EEe-----CCeEEEEEcC-CCeee
Q 014007          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR----I---I-VVL-----EQKIFVYNFA-DLKLL  207 (432)
Q Consensus       142 ~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~----~---~-~~~-----d~~i~i~d~~-~~~~~  207 (432)
                      ..+++....     +-+.+||+ +|+.++.+.. +.++.+..-|+-    .   + +++     +++|.+|++. ....+
T Consensus        41 s~ii~t~k~-----~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l  113 (355)
T 3amr_A           41 SKLITTNKK-----SGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (355)
T ss_dssp             CEEEEEETT-----TEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred             cEEEEEcCC-----CCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence            335555555     89999998 8998888864 677888777742    1   2 222     3689999773 22234


Q ss_pred             EEEee-------ccCCcceEEE--ecCCCcEEEEeecCCCCcEEEEEccC--------CceeeeeccCCceeEEEEcCCC
Q 014007          208 HQIET-------IANPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYAS--------KRTKFIMAHDSRIACFALTQDG  270 (432)
Q Consensus       208 ~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~g~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~sp~~  270 (432)
                      ..+..       .......+++  ++....+++... ..+|.+..|++..        +.++.+. ..+.+..+...+..
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~-~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~  191 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT-GKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEY  191 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE-CSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTT
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEE-CCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCC
Confidence            44411       1134455677  665554333333 4779999998842        2233333 35678899999988


Q ss_pred             CEEEEEcCCCceEEEEECC-----CCceEEEEEeCCCcCceEEEEE--CCCCC-EEEEEe-CCCeEEEEEec
Q 014007          271 QLLATSSTKGTLVRIFNTL-----DGTLLQEVRRGADRAEIYSLAF--SSNAQ-WLAVSS-DKGTVHVFNLK  333 (432)
Q Consensus       271 ~~l~~~~~dg~~i~vwd~~-----~~~~~~~~~~~~~~~~i~~~~~--s~~~~-~l~~~~-~dg~i~iwd~~  333 (432)
                      ..|+.+-++.. |..+|.+     +++.+..+........+..|++  .++++ +|++++ .++++.+||.+
T Consensus       192 g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          192 GRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            89999999988 8888865     3445544432222346888887  55665 666665 67899999996

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.40  E-value=0.0017  Score=63.11  Aligned_cols=174  Identities=9%  Similarity=-0.033  Sum_probs=116.8

Q ss_pred             CeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (432)
                      +.|+..++........+.  .-..+.+++|++....++ +   ++.|+.+++........+.........+++.+.++.+
T Consensus        15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~L   94 (628)
T 4a0p_A           15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL   94 (628)
T ss_dssp             TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEE
Confidence            689999998765444433  335788999998654444 3   6789999986543333333222345679999988888


Q ss_pred             EEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEc--CCCceEEEEECCCCceEEEEEeCCCcCce
Q 014007          230 VLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i  306 (432)
                      +++-  ...+.|.+.++++.....+. ..-.....|+++|...+|+...  ..+. |...++..... ..+..  .-...
T Consensus        95 Y~tD--~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~-I~r~~~dG~~~-~~l~~--~~~~P  168 (628)
T 4a0p_A           95 YWAD--TGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK-IDRAAMDGSER-TTLVP--NVGRA  168 (628)
T ss_dssp             EEEE--TTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCSC-EEEEC--SCSSE
T ss_pred             EEEE--CCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCE-EEEEeCCCCce-EEEEC--CCCCc
Confidence            7754  35689999999886554443 3445678999998555555544  2456 88888754433 33332  23568


Q ss_pred             EEEEECCCCCEEEEEe-CCCeEEEEEecCC
Q 014007          307 YSLAFSSNAQWLAVSS-DKGTVHVFNLKVN  335 (432)
Q Consensus       307 ~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  335 (432)
                      ..|+++++++.|+.+. ..+.|..+|+...
T Consensus       169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            8999999877777665 5678999988654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=0.0028  Score=59.08  Aligned_cols=191  Identities=10%  Similarity=0.045  Sum_probs=111.5

Q ss_pred             EEEEeeeC--CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeec----CCceEEEEE-------ecCccEEE-e---CC
Q 014007          132 VVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF----RSEVRSVKL-------RRDRIIVV-L---EQ  194 (432)
Q Consensus       132 v~~~~~~~--~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~----~~~v~~~~~-------~~~~~~~~-~---d~  194 (432)
                      ...|+++|  .+.++++....     +.|++.|.+++........    ......++|       ++++..++ +   ++
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~-----~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~  215 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGH-----KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG  215 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETE-----EEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred             CCEEEEccCCCCEEEEEECCC-----CeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence            45778887  35555554444     6799999887765544432    235889999       99987444 3   21


Q ss_pred             ------eEEEEEcCC-Ceee-----EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc-------CCce----
Q 014007          195 ------KIFVYNFAD-LKLL-----HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-------SKRT----  251 (432)
Q Consensus       195 ------~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-------~~~~----  251 (432)
                            .|.+++... +...     ..+..... ...++++|++..++++.  ..++.|..+|+.       ++..    
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~-p~giavdp~~g~LYvtd--~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ-CNGATIHPINGELYFNS--YEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC-CCCEEECTTTCCEEEEE--TTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             CcccCceEEEEecCCCCceeecccceeeccCCC-ceEEEEcCCCCeEEEEE--CCCCEEEEEecccccccccCceeeccc
Confidence                  266676333 2221     23333333 34678899877777654  467889999987       4433    


Q ss_pred             --------eee-e-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEEC--CCCce--EEEEEeC-CCc------------
Q 014007          252 --------KFI-M-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNT--LDGTL--LQEVRRG-ADR------------  303 (432)
Q Consensus       252 --------~~~-~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~--~~~~~--~~~~~~~-~~~------------  303 (432)
                              ..+ . +.......|+|+|+|++|+.+. .... |+.+|.  ..+..  ...+-+. ...            
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~-I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f  371 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHY-FMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM  371 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCE-EEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence                    121 1 2234568999999999655554 4555 888654  33322  1233321 000            


Q ss_pred             CceE-EEEEC-------CCCCEEEEEeCCCeEEEEE
Q 014007          304 AEIY-SLAFS-------SNAQWLAVSSDKGTVHVFN  331 (432)
Q Consensus       304 ~~i~-~~~~s-------~~~~~l~~~~~dg~i~iwd  331 (432)
                      .... .++..       .+|.++++=...++|+.++
T Consensus       372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~  407 (496)
T 3kya_A          372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT  407 (496)
T ss_dssp             SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC
T ss_pred             CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe
Confidence            1233 44443       4556555555777888887

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.25  E-value=6.1e-05  Score=75.24  Aligned_cols=193  Identities=8%  Similarity=0.036  Sum_probs=112.9

Q ss_pred             eEEEEeee-CCeEEEec-----CCCCCCCCCCeEEEEeCCCC-ceeEE-eecCCceEEEEEecCccEEEe---C-----C
Q 014007          131 GVVEMLFR-CNILALVG-----GGPDPQYPLNKVMIWDDHQS-RCIGE-LSFRSEVRSVKLRRDRIIVVL---E-----Q  194 (432)
Q Consensus       131 ~v~~~~~~-~~~~~~~s-----~~~d~~~~~~~v~iwd~~~~-~~~~~-~~~~~~v~~~~~~~~~~~~~~---d-----~  194 (432)
                      .+....|+ |++..++-     |+..     ..|+++|+.++ +.+.. +.  .....+.|+||++.++.   +     .
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~-----~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEV-----YTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSC-----EEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCce-----EEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCC
Confidence            67788999 99976663     2222     46999999988 63221 21  12456889999976662   3     2


Q ss_pred             eEEEEEcCCCee--eEEEeec-cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ce--eeee-ccCCceeEEEE
Q 014007          195 KIFVYNFADLKL--LHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RT--KFIM-AHDSRIACFAL  266 (432)
Q Consensus       195 ~i~i~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~--~~~~-~~~~~i~~~~~  266 (432)
                      .|+++++.++..  ...+... ......+.|+|||+.+++.........|.++|+.++  ..  ..+. .......++.|
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~  327 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM  327 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee
Confidence            688888877542  2222221 223346789999998887764445667888898774  23  3333 34455566665


Q ss_pred             cCCCCEEEEEcCC----CceEEEEECCCCceEEE-EEeCCCcCceEEEEECCCCCEEEEEeCCCeEE--EEEe
Q 014007          267 TQDGQLLATSSTK----GTLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH--VFNL  332 (432)
Q Consensus       267 sp~~~~l~~~~~d----g~~i~vwd~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~--iwd~  332 (432)
                      +.++.+++....+    .. |..+|+.++..... +..+.....+..+.+. .+.++++...++..+  ++++
T Consensus       328 ~~g~~l~~~t~~~~a~~~~-L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          328 HGTSHLVILTNEGGAVNHK-LLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             ETTTEEEEEECTTTCTTCE-EEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eeCCEEEEEeCCCCCCCcE-EEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            5444444444443    24 77778765322222 2222122245666665 334555666777644  5554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.22  E-value=0.0003  Score=69.13  Aligned_cols=232  Identities=9%  Similarity=0.005  Sum_probs=123.9

Q ss_pred             CeEEEEEcCCCCEEEEEc-CC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC-CCCCCCCCeEEEEeC
Q 014007           87 TLLHISFNQDHGCFAAGT-DH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVMIWDD  163 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~-~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~~~v~iwd~  163 (432)
                      ...++++..+|+++++|+ +. .+.+||..+.+-.....+.  ....-..+...+++.+++.|+ .+.......+.+||.
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~--~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ--VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS--SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCC--ccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence            344578889999999988 33 4999998776654333332  222223344444565665555 332222357999998


Q ss_pred             CCCceeEE-------ee---------cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccC---------C
Q 014007          164 HQSRCIGE-------LS---------FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIAN---------P  216 (432)
Q Consensus       164 ~~~~~~~~-------~~---------~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~---------~  216 (432)
                      .+++-...       +.         ..+.+..+.. .++..+..  ...+..||..+............         .
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~  400 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC  400 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred             CCCcceeCCCccccccccccccceeecCCceEEEEC-CCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC
Confidence            87653321       00         0111111111 12322221  35688999887654433322211         1


Q ss_pred             cceEEEecCCCcEEEEeecCC--C-----C---cEEEEEccCCceeeee---ccCCc-eeEEEEcCCCCEEEEEcCC---
Q 014007          217 KGLCAVSQGVGSLVLVCPGLQ--K-----G---QVRVEHYASKRTKFIM---AHDSR-IACFALTQDGQLLATSSTK---  279 (432)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~g~~--d-----~---~i~i~d~~~~~~~~~~---~~~~~-i~~~~~sp~~~~l~~~~~d---  279 (432)
                      ...+.+...+..+++ ++|..  +     .   .|.+||..+..-..+.   .+... -.++...|+|++++.|+.+   
T Consensus       401 ~~av~~~~~~~~i~v-~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~  479 (656)
T 1k3i_A          401 GNAVMYDAVKGKILT-FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI  479 (656)
T ss_dssp             CEEEEEETTTTEEEE-ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred             CceEeccCCCCeEEE-EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence            123334344445544 34421  1     1   5777887765544332   12222 3455677899999999864   


Q ss_pred             --------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC
Q 014007          280 --------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD  323 (432)
Q Consensus       280 --------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  323 (432)
                              .. +.+||..+.+-...-.............+.++|+.++.|+.
T Consensus       480 ~~~~~~~~~~-v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          480 PFEDSTPVFT-PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TTCCCSBCCC-CEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CcCCCCcccc-eEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                    45 89999877654321111111122334556799999999984

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.20  E-value=8e-06  Score=80.60  Aligned_cols=229  Identities=10%  Similarity=-0.055  Sum_probs=129.3

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCC----CceeEEee
Q 014007           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ----SRCIGELS  173 (432)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~----~~~~~~~~  173 (432)
                      +|+.+..+.|+..++++....  ..+.  ....+..++|++. +.++++....     +.|+.+++..    ......+.
T Consensus       379 ~ll~~~~~~I~~id~~~~~~~--~~~~--~~~~p~gla~d~~~~~Ly~sD~~~-----~~I~~~~~~g~~~~~~~~~~i~  449 (699)
T 1n7d_A          379 YLFFTNRHEVRKMTLDRSEYT--SLIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS  449 (699)
T ss_dssp             CBCCCCTTC-CEECTTSCCEE--CCSC--CCTTCCCCEEETTTTEEEECCTTT-----TSBEEEESCCCCC-CCCCCBCC
T ss_pred             eEEecCccceEEEeCCCCcce--eeec--cCcceEEEccccccCeEEEEecCC-----CeEEEEecCCCCCCcceEEEEe
Confidence            344455556888887665433  2222  2234567778764 4455554444     7899999875    22222222


Q ss_pred             -cCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC
Q 014007          174 -FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (432)
Q Consensus       174 -~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~  248 (432)
                       .......|++.+ .+.++++   .+.|.++++........+.........++++|.+..++++-.+ ..+.|.+++++.
T Consensus       450 ~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG  528 (699)
T 1n7d_A          450 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG  528 (699)
T ss_dssp             SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSS
T ss_pred             CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCC
Confidence             223456778874 3444443   5689999976543333332222344678999988777765322 337888888776


Q ss_pred             Cceeeee-ccCCceeEEEEcCCCCEEE-EEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEECCCCCEEEEEeCCC
Q 014007          249 KRTKFIM-AHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKG  325 (432)
Q Consensus       249 ~~~~~~~-~~~~~i~~~~~sp~~~~l~-~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg  325 (432)
                      .....+. ..-.....|+|+|++..|+ +-+..+. |.++|+... ....+... ........|++..+ .++++....+
T Consensus       529 ~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~-I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~  605 (699)
T 1n7d_A          529 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINE  605 (699)
T ss_dssp             CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE-EEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred             CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe-EEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence            5443332 2234567899998765554 4455566 999998543 33333211 11123445666443 4444555678


Q ss_pred             eEEEEEecCCCCCCC
Q 014007          326 TVHVFNLKVNSGSAR  340 (432)
Q Consensus       326 ~i~iwd~~~~~~~~~  340 (432)
                      .|..++..+++.+..
T Consensus       606 ~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          606 AIFSANRLTGSDVNL  620 (699)
T ss_dssp             CEEEEETTTEEEEEC
T ss_pred             eEEEEEccCCCceEE
Confidence            899999876654433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.14  E-value=1.6e-05  Score=78.38  Aligned_cols=174  Identities=8%  Similarity=-0.045  Sum_probs=108.4

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcCC----CeeeEEEeeccCCcceEEEecCCC
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFAD----LKLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                      +.|+..++...+....+.....+.+++|.+.+..|+ +   .+.|+.+++..    ......+.........+++.+.++
T Consensus       386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g  465 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  465 (699)
T ss_dssp             TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSS
T ss_pred             cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCC
Confidence            678888887766555555455677899998654444 3   57899999875    222222211112234688888777


Q ss_pred             cEEEEeecCCCCcEEEEEccCCceeeeec-cCCceeEEEEcCCCCEEEEEcC-C-CceEEEEECCCCceEEEEEeCCCcC
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSST-K-GTLVRIFNTLDGTLLQEVRRGADRA  304 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~-d-g~~i~vwd~~~~~~~~~~~~~~~~~  304 (432)
                      .++++-  ...+.|.++++.......+.. .......|+++|.+.+|+.... . +. |.++++.. .....+... .-.
T Consensus       466 ~LY~tD--~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~dG-~~~~~l~~~-~l~  540 (699)
T 1n7d_A          466 NIYWTD--SVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNG-VDIYSLVTE-NIQ  540 (699)
T ss_dssp             BCEECC--TTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCSSS-CCCCEESCS-SCS
T ss_pred             cEEEEe--ccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe-EEEEeCCC-CCeeEEEeC-CCC
Confidence            777643  356889999988766555432 2345678999996655555443 2 66 88887643 322233211 124


Q ss_pred             ceEEEEECCCCCEEEEE-eCCCeEEEEEecC
Q 014007          305 EIYSLAFSSNAQWLAVS-SDKGTVHVFNLKV  334 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~-~~dg~i~iwd~~~  334 (432)
                      ....|+|+|++..|+.+ +..+.|..+++..
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            56789999976655554 4677899999864

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.09  E-value=0.0018  Score=57.06  Aligned_cols=133  Identities=13%  Similarity=0.236  Sum_probs=90.9

Q ss_pred             CCeEEEEEcCCCeeeEEEeeccCCcceEEEec----CCCc--EEEEeecCC--CCcEEEEEcc--CCceeeeec------
Q 014007          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ----GVGS--LVLVCPGLQ--KGQVRVEHYA--SKRTKFIMA------  256 (432)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~g~~--d~~i~i~d~~--~~~~~~~~~------  256 (432)
                      ++-+.+||+ +|+.++.+..  ...+.+.+.|    .++.  +++++ ...  ++.|.+|+++  ++.+..+..      
T Consensus        49 ~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as-~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~  124 (355)
T 3amr_A           49 KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAAS-NRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIA  124 (355)
T ss_dssp             TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEE-ECSTTCCEEEEEEECTTTCCEEECSCTTSCEE
T ss_pred             CCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEe-CCCCCCCeEEEEEECCCCCceeeccccccCcC
Confidence            568999999 8898888753  4455566555    2333  23333 334  6889999774  444544421      


Q ss_pred             cC-CceeEEEE--cCC-CC-EEEEEcCCCceEEEEECC-------CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC
Q 014007          257 HD-SRIACFAL--TQD-GQ-LLATSSTKGTLVRIFNTL-------DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK  324 (432)
Q Consensus       257 ~~-~~i~~~~~--sp~-~~-~l~~~~~dg~~i~vwd~~-------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  324 (432)
                      .. ..+..+++  +|. ++ ++++...+|. +..|++.       +.+.+++|..   ...+-.+...+....|+.+-++
T Consensus       125 t~~~~pyGlcly~~~~~g~~yafV~~k~G~-~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~~g~Lyv~eEd  200 (355)
T 3amr_A          125 TAINEVYGFTLYHSQKTGKYYAMVTGKEGE-FEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDEYGRLYIAEED  200 (355)
T ss_dssp             CCCSSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCCeeEEEEEecCCCCcEEEEEECCCCe-EEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCCCCeEEEeccc
Confidence            22 56777888  774 43 6888888898 9999883       3466778874   3578899999988899999988


Q ss_pred             CeEEEEEec
Q 014007          325 GTVHVFNLK  333 (432)
Q Consensus       325 g~i~iwd~~  333 (432)
                      ..|..|+.+
T Consensus       201 ~GIw~~da~  209 (355)
T 3amr_A          201 EAIWKFSAE  209 (355)
T ss_dssp             TEEEEEECS
T ss_pred             ceEEEEeCC
Confidence            666555544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.05  E-value=0.0027  Score=61.61  Aligned_cols=228  Identities=11%  Similarity=-0.001  Sum_probs=131.3

Q ss_pred             CEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCce-eEEee-c
Q 014007           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRC-IGELS-F  174 (432)
Q Consensus        98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~-~~~~~-~  174 (432)
                      .+|.-+..+.|+..+++..........  ........++|++ ++..+.+-...     +.|..+++..... ...+. .
T Consensus        10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~--~~~~~~~~ld~~~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~~v~~~~   82 (619)
T 3s94_A           10 PLLLYANRRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSG   82 (619)
T ss_dssp             CCEEEECSSBEEEECCC---------C--BCCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC-----CEEEECSS
T ss_pred             ceEEEeccccEEEEeCCCCcceEEEEE--cCCCceEEEEEEeCCCEEEEEECCC-----CeEEEEEccCCCceEEEEeCC
Confidence            456677777799988875432221222  2344567888886 44455554444     7899999765432 22233 2


Q ss_pred             CCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC
Q 014007          175 RSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (432)
Q Consensus       175 ~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~  249 (432)
                      -....++++.+.+. +..+   .+.|.+.++... ....+. ........+++.|.+..++++-.| ..+.|...+++..
T Consensus        83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~  160 (619)
T 3s94_A           83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGS  160 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSC
T ss_pred             CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCC
Confidence            36788999998544 4444   578999998643 333332 233345579999988777765433 4577888888775


Q ss_pred             ceeeee-ccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeE
Q 014007          250 RTKFIM-AHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (432)
Q Consensus       250 ~~~~~~-~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  327 (432)
                      ....+. ..-.....|++++++..|+.+ ...+. |..+|+..... ..+... .-.....|++..+ ..+.+-...+.|
T Consensus       161 ~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~-I~~~~~dG~~~-~~~~~~-~~~~P~gi~~~~~-~ly~td~~~~~V  236 (619)
T 3s94_A          161 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTNR-QAVVKG-SLPHPFALTLFED-ILYWTDWSTHSI  236 (619)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC-EEEESSSCCEE-C----------CCCEEESSS-EEEEECTTTCSE
T ss_pred             ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe-EEEecCCCCcc-EEEEeC-CCCCceEEEEeCC-EEEEecCCCCEE
Confidence            544443 334567899999876655554 44566 99998754332 222211 1122356777655 333344467789


Q ss_pred             EEEEecCCCCC
Q 014007          328 HVFNLKVNSGS  338 (432)
Q Consensus       328 ~iwd~~~~~~~  338 (432)
                      ...|..+++..
T Consensus       237 ~~~d~~tg~~~  247 (619)
T 3s94_A          237 LACNKYTGEGL  247 (619)
T ss_dssp             EEEESSSCCCC
T ss_pred             EEEECCCCccc
Confidence            88888776543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.01  E-value=0.00087  Score=58.48  Aligned_cols=160  Identities=9%  Similarity=0.052  Sum_probs=104.3

Q ss_pred             ceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee-ecc-------CCceeEEEE---cCCCCEEEEEcC--------
Q 014007          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-MAH-------DSRIACFAL---TQDGQLLATSST--------  278 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~~-------~~~i~~~~~---sp~~~~l~~~~~--------  278 (432)
                      .+++|+.....+++..  -..+.|..||...+....+ ...       ...+..|.|   .|+++++++...        
T Consensus        16 E~~~wd~~~g~~~vs~--l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSN--LYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             SCEEEETTTTEEEEEE--TTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             cCccCcCCCCEEEEEe--ccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            4678888777666543  4689999999875443332 111       113579999   688888775431        


Q ss_pred             -----CCceEEEEECC---CCceEEEEEeCC-----------CcCceEEEEECCCCCEEEEEeCC-CeEEEEEecCCCCC
Q 014007          279 -----KGTLVRIFNTL---DGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSSDK-GTVHVFNLKVNSGS  338 (432)
Q Consensus       279 -----dg~~i~vwd~~---~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~  338 (432)
                           +.. |..||+.   +++.+.......           .......++..++|+..++++.. +.|..++..... +
T Consensus        94 ~~~~g~~~-v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~  171 (334)
T 2p9w_A           94 QSSHGASS-FHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-V  171 (334)
T ss_dssp             CCSSSCCE-EEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-E
T ss_pred             cccCCCCE-EEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-E
Confidence                 566 9999999   888877665210           01248899999999999988877 776655554332 0


Q ss_pred             CCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                      .                  .+      +....     .....-..+.++++|+|+.|++....|.+..+++.
T Consensus       172 ~------------------~~------~~~~~-----~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          172 S------------------TF------AWESG-----NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             E------------------EE------EECCC-----CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             e------------------ee------eecCC-----CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            0                  00      00000     00001136789999999998888779999888765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.01  E-value=0.007  Score=53.68  Aligned_cols=270  Identities=14%  Similarity=0.132  Sum_probs=141.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc-cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      ...+.+|.|.+++..+++|..+.| +...+.++.=...... ......+..+.+.++..+++ + ..     +.|+.- .
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~-g-~~-----g~i~~S-~  105 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIV-G-EP-----PIMLHT-T  105 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEE-E-ET-----TEEEEE-S
T ss_pred             CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEE-E-CC-----CeEEEE-C
Confidence            347999999988888887765544 3333333211111111 01345678888887544443 3 23     655442 2


Q ss_pred             CCCceeEEee----cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeecC
Q 014007          164 HQSRCIGELS----FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL  236 (432)
Q Consensus       164 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~  236 (432)
                      ..|+.-....    +...+..+.+.+++.+++.  ++.|+. ....++.-..+. .....+..+.+.+++..  ++. + 
T Consensus       106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~--~~~-g-  180 (327)
T 2xbg_A          106 DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEY--VAV-S-  180 (327)
T ss_dssp             STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCE--EEE-E-
T ss_pred             CCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcE--EEE-E-
Confidence            3344322222    2356778887777766653  444322 112233322222 22334566777776543  332 2 


Q ss_pred             CCCcEEEE-EccCCceeee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC--CCcCceEEEEEC
Q 014007          237 QKGQVRVE-HYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG--ADRAEIYSLAFS  312 (432)
Q Consensus       237 ~d~~i~i~-d~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~--~~~~~i~~~~~s  312 (432)
                      .+|.+..- |-....-..+ ......+..+.+.+++.+++ ++.+|. +++.+...++.-..+...  .....+..+.+.
T Consensus       181 ~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~-~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~  258 (327)
T 2xbg_A          181 SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGK-IAFSDPDNSENWGELLSPLRRNSVGFLDLAYR  258 (327)
T ss_dssp             TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTE-EEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred             CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCce-EEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence            34555443 3212221111 23456788999999987664 455777 777642224333222211  112358899999


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE---ecCCCceEEEEc
Q 014007          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR---LVEGSPYIVAFG  389 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s  389 (432)
                      +++..++++. +|.| ++..+.++.                                 |.  .+.   .....+..+.|.
T Consensus       259 ~~~~~~~~g~-~g~i-~~S~DgG~t---------------------------------W~--~~~~~~~~~~~~~~v~~~  301 (327)
T 2xbg_A          259 TPNEVWLAGG-AGAL-LCSQDGGQT---------------------------------WQ--QDVDVKKVPSNFYKILFF  301 (327)
T ss_dssp             SSSCEEEEES-TTCE-EEESSTTSS---------------------------------CE--ECGGGTTSSSCCCEEEEE
T ss_pred             CCCEEEEEeC-CCeE-EEeCCCCcc---------------------------------cE--EcCccCCCCCCeEEEEEE
Confidence            8888777664 6666 344444431                                 00  000   012346788887


Q ss_pred             cCCCEEEEEecCCeEEEEE
Q 014007          390 HQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       390 ~~~~~l~~~~~dg~v~iw~  408 (432)
                      +++ .+++++.+|.|+.++
T Consensus       302 ~~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          302 SPD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             ETT-EEEEECSTTEEEEEC
T ss_pred             CCC-ceEEEcCCceEEEEc
Confidence            554 466777899776644

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.98  E-value=0.018  Score=57.51  Aligned_cols=230  Identities=13%  Similarity=0.146  Sum_probs=133.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      ...|++|.-..+|.+- .|+.+|+..||-...+..  ..........|.++....++.+.++..       .-+..||..
T Consensus        21 ~n~V~~I~qD~~G~lW-igT~~GL~ryDG~~~~~~--~~~~~~~~~~i~~i~~d~~g~lWigT~-------~Gl~~yd~~   90 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIW-IGSNKGLFSYDGYSTQQH--FTYGENNNTRIYCGVIIDNTYLYMGTD-------NGILVYNYR   90 (758)
T ss_dssp             CCCEEEEEECTTSCEE-EEESSCEEEECSSCEEEC--SCTTSTTSSCEEEEEEETTTEEEEEET-------TEEEEEETT
T ss_pred             cceEEEEEECCCCCEE-EEECCCccccCCCceEEE--EccCCCCCceEEEEEEcCCCcEEEEeC-------CCeEEEeCC
Confidence            5689999999888654 455778888874322211  111112345677877777765555443       458899987


Q ss_pred             CCceeEEee-cCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEee-----ccCCcceEEEecCCCcEEEEeecCCC
Q 014007          165 QSRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET-----IANPKGLCAVSQGVGSLVLVCPGLQK  238 (432)
Q Consensus       165 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (432)
                      +.+...... ....|.++.......++++.+.|..+|..+++.. .+..     ....+..+....++ .+++++   . 
T Consensus        91 ~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g-~lWigt---~-  164 (758)
T 3ott_A           91 ADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDN-QIYVGT---Y-  164 (758)
T ss_dssp             TTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTC-CEEEEE---T-
T ss_pred             CCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCC-CEEEEe---C-
Confidence            764432111 2345777765433344556668899998765432 2311     12234444444444 445543   2 


Q ss_pred             CcEEEEEccCCceeeeecc------CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007          239 GQVRVEHYASKRTKFIMAH------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (432)
Q Consensus       239 ~~i~i~d~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s  312 (432)
                      +-+..++..+.....+...      ...|.++....++..|..|+. +. |..+|..+++... +... ....|.++...
T Consensus       165 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G-l~~~~~~~~~~~~-~~~l-~~~~i~~i~~d  240 (758)
T 3ott_A          165 NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY-LFQYFPSTGQIKQ-TEAF-HNNSIKSLALD  240 (758)
T ss_dssp             TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE-EEEEETTTTEEEE-EEEE-EEEEEEEEEEC
T ss_pred             CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC-CeEEcCCCCeEEe-ccCC-CCCeEEEEEEc
Confidence            3477788766554433211      224888888777776666664 45 8899987765432 2211 12468889888


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCC
Q 014007          313 SNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      .+|.+.+. +.+ -+.+++..+.+
T Consensus       241 ~~g~lWig-T~~-Gl~~~~~~~~~  262 (758)
T 3ott_A          241 GNGDLLAG-TDN-GLYVYHNDTTP  262 (758)
T ss_dssp             TTCCEEEE-ETT-EEEEECCTTSC
T ss_pred             CCCCEEEE-eCC-ceeEEecCCCc
Confidence            88876654 444 58888876643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.91  E-value=0.0019  Score=58.10  Aligned_cols=156  Identities=12%  Similarity=0.099  Sum_probs=100.1

Q ss_pred             EEEecCCCcEEEEeecCCCCcEEEEEccC-Cceeeeecc----CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc--
Q 014007          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--  292 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~--  292 (432)
                      ...+.++..++++.    ++.||.-++.. ...+.+...    -..|..+..+|+|.+||..+.. . |.|-.+..+.  
T Consensus        26 ~~~~~n~t~i~~a~----~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~-V~Vv~LP~~~~~   99 (452)
T 3pbp_A           26 IFSSQNGTRIVFIQ----DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-E-IFVMEVPWGYSN   99 (452)
T ss_dssp             EEEETTTTEEEEEE----TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-E-EEEEECCTTCSC
T ss_pred             EEEEcCCCEEEEEE----CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-e-EEEEEecCcccc
Confidence            44556666666553    57888888774 333344332    2368889999999999998766 4 8888887331  


Q ss_pred             ----------eEEEEEeCC----CcCceEEEEECCC---CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 014007          293 ----------LLQEVRRGA----DRAEIYSLAFSSN---AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSS  355 (432)
Q Consensus       293 ----------~~~~~~~~~----~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  355 (432)
                                ..+.+..+.    ...+|..+.|+|-   +..|++-..|+.|++||+......+.               
T Consensus       100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~---------------  164 (452)
T 3pbp_A          100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI---------------  164 (452)
T ss_dssp             CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---------------
T ss_pred             CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---------------
Confidence                      123444321    2367999999995   45899999999999999987432211               


Q ss_pred             ceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe--cCCeEEE
Q 014007          356 LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG--MDGSFYR  406 (432)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~v~i  406 (432)
                        .+.    +..    ....+......|.+++|+.++-.|...+  ..|.||-
T Consensus       165 --~L~----k~~----~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          165 --VLN----KPN----NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             --EES----CCC----SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             --chh----ccc----cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence              000    000    0000112224688999999888777755  7787765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.90  E-value=0.012  Score=52.80  Aligned_cols=190  Identities=13%  Similarity=0.092  Sum_probs=102.1

Q ss_pred             eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce--eEEee----cCCceEEEEEecC----ccEEEe---C----
Q 014007          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC--IGELS----FRSEVRSVKLRRD----RIIVVL---E----  193 (432)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~--~~~~~----~~~~v~~~~~~~~----~~~~~~---d----  193 (432)
                      .-..++|.+++.++++.. .     +.|++++  +++.  +..+.    .......|+++|+    +.+.++   .    
T Consensus        32 ~P~~ia~~pdG~l~V~e~-~-----g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAER-P-----GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             CEEEEEECTTSCEEEEET-T-----TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             CceEEEEcCCCeEEEEeC-C-----CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            456889999998777643 4     8999998  4432  22221    2456889999998    443332   1    


Q ss_pred             -CeEEEEEcCCCe-----ee-EEEee---ccCCcceEEEecCCCcEEEEeecC-----------CCCcEEEEEccCC---
Q 014007          194 -QKIFVYNFADLK-----LL-HQIET---IANPKGLCAVSQGVGSLVLVCPGL-----------QKGQVRVEHYASK---  249 (432)
Q Consensus       194 -~~i~i~d~~~~~-----~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~-----------~d~~i~i~d~~~~---  249 (432)
                       +.|..++...+.     .+ ..+..   ..+....++|.|+| .++++....           ..|.|.-++.+..   
T Consensus       104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~  182 (352)
T 2ism_A          104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP  182 (352)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred             ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence             678888876432     11 11221   11233579999998 566654211           1256666665541   


Q ss_pred             ----------ceeee-eccCCceeEEEEcC-CCCEEEEEcCCCceE------EEEECCCCc------------------e
Q 014007          250 ----------RTKFI-MAHDSRIACFALTQ-DGQLLATSSTKGTLV------RIFNTLDGT------------------L  293 (432)
Q Consensus       250 ----------~~~~~-~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i------~vwd~~~~~------------------~  293 (432)
                                ....+ .++ .....++|+| +|.++++-..... +      .|.-+..+.                  .
T Consensus       183 ~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~-~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p  260 (352)
T 2ism_A          183 GNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSG-EQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP  260 (352)
T ss_dssp             TCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC-------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred             CCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCC-CCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence                      11111 122 2356789999 6665554332222 1      122222221                  1


Q ss_pred             EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       294 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      +..+  . +......++| .+|.++++.-..+.|...+++..
T Consensus       261 ~~~~--~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~  298 (352)
T 2ism_A          261 LYFW--P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGE  298 (352)
T ss_dssp             SEEC--T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEE
T ss_pred             eEec--C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCC
Confidence            1111  1 1134567777 46766666556677777777654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.85  E-value=0.0066  Score=54.09  Aligned_cols=202  Identities=7%  Similarity=0.067  Sum_probs=112.1

Q ss_pred             eEEEEEcCCCCEEEEE-------------cCCcEEEEEcCCCe-eEEEeeccc----CcceeEEEEeeeC--Ce--EEEe
Q 014007           88 LLHISFNQDHGCFAAG-------------TDHGFRIYNCDPFR-EIFRRDFER----GGGIGVVEMLFRC--NI--LALV  145 (432)
Q Consensus        88 v~~~~~s~~~~~l~~~-------------~~~~i~iw~~~~~~-~~~~~~~~~----~~~~~v~~~~~~~--~~--~~~~  145 (432)
                      .-.+...|+|..++++             .++.|.++|.++.. ......+.+    ........+.+..  ++  .+++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3455678888766655             23349999986321 111122221    1223455555533  22  3444


Q ss_pred             cCCCCCCCCCCeEEEEeCCCC-c---eeEEeec--CCceEEEEEecCccEEEe------C--------------CeEEEE
Q 014007          146 GGGPDPQYPLNKVMIWDDHQS-R---CIGELSF--RSEVRSVKLRRDRIIVVL------E--------------QKIFVY  199 (432)
Q Consensus       146 s~~~d~~~~~~~v~iwd~~~~-~---~~~~~~~--~~~v~~~~~~~~~~~~~~------d--------------~~i~i~  199 (432)
                      .....   ....|.+|++..+ .   .+..+.+  -...+++.+.++|.+.++      |              +.|+.+
T Consensus       132 vnh~~---~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          132 VNHPG---SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EECST---TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EECCC---CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            42221   0167888876553 2   2233332  345789999999986653      1              345555


Q ss_pred             EcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cce---eeeeccCCceeEEEEcC-CCCEEE
Q 014007          200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRT---KFIMAHDSRIACFALTQ-DGQLLA  274 (432)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~---~~~~~~~~~i~~~~~sp-~~~~l~  274 (432)
                      |.  ++. +.+...-..-+.++|+||++.++++-  +..+.|..|+++. +.+   +.+ ........+++.+ +|++.+
T Consensus       209 d~--~~~-~~~~~~l~~pNGia~spDg~~lYvad--t~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwv  282 (355)
T 3sre_A          209 SP--NDV-RVVAEGFDFANGINISPDGKYVYIAE--LLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWV  282 (355)
T ss_dssp             CT--TCC-EEEEEEESSEEEEEECTTSSEEEEEE--GGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEE
T ss_pred             EC--CeE-EEeecCCcccCcceECCCCCEEEEEe--CCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEE
Confidence            54  332 22222233446799999999988865  3468999999864 222   223 3356678899999 598877


Q ss_pred             EEcCCCceEEEEECC--CCceEEEEE
Q 014007          275 TSSTKGTLVRIFNTL--DGTLLQEVR  298 (432)
Q Consensus       275 ~~~~dg~~i~vwd~~--~~~~~~~~~  298 (432)
                      ++..++..|..||-.  .+..+..+.
T Consensus       283 a~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          283 GCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             EEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             EecCCceEEEEECCCCCCCCEEEEEE
Confidence            666554214444433  244455554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.81  E-value=0.0081  Score=52.42  Aligned_cols=192  Identities=6%  Similarity=0.032  Sum_probs=115.0

Q ss_pred             EEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEE-eec-------CCceEEEEE---ecCccEEE-eC------
Q 014007          133 VEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-LSF-------RSEVRSVKL---RRDRIIVV-LE------  193 (432)
Q Consensus       133 ~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~-~~~-------~~~v~~~~~---~~~~~~~~-~d------  193 (432)
                      -+..|+. ++.++++.-..     ++|..||...+..... +..       ...+.+|.|   .+++++++ .+      
T Consensus        16 E~~~wd~~~g~~~vs~l~~-----g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYK-----GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             SCEEEETTTTEEEEEETTT-----TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             cCccCcCCCCEEEEEeccC-----CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            3566765 56677776666     9999999875543333 222       114689999   68887776 33      


Q ss_pred             ---------CeEEEEEcC---CCeeeEEEeec--c-----------CCcceEEEecCCCcEEEEeecCCC-CcEEEEEcc
Q 014007          194 ---------QKIFVYNFA---DLKLLHQIETI--A-----------NPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYA  247 (432)
Q Consensus       194 ---------~~i~i~d~~---~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~~  247 (432)
                               ..|..||+.   +++.+......  .           .....+++.++|+-.+.-   +.. +.|..++.+
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~---s~~~~~I~rV~pd  167 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF---ALGMPAIARVSAD  167 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE---EESSCEEEEECTT
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeC---CCCCCeEEEEeCC
Confidence                     569999998   78776655421  1           124568888888644322   234 666666666


Q ss_pred             CCceeeeec------cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe---CC--CcCceEEE-EECCCC
Q 014007          248 SKRTKFIMA------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR---GA--DRAEIYSL-AFSSNA  315 (432)
Q Consensus       248 ~~~~~~~~~------~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~---~~--~~~~i~~~-~~s~~~  315 (432)
                      ......+..      .....+.|+++|+|+.|++....+. |..+|+.+.... .+..   +.  .-.....| .--.+|
T Consensus       168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~-L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G  245 (334)
T 2p9w_A          168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA-LTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGN  245 (334)
T ss_dssp             SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS-EEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETT
T ss_pred             CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe-EEEEcCCCCcce-eecccccCCcccccCcccccccccCC
Confidence            554443321      1223679999999999988877888 999998854330 1221   10  01123333 333477


Q ss_pred             CEEEEE-eCCCeEEEEEecC
Q 014007          316 QWLAVS-SDKGTVHVFNLKV  334 (432)
Q Consensus       316 ~~l~~~-~~dg~i~iwd~~~  334 (432)
                      +.|+.+ ...+.+.+.+.+.
T Consensus       246 ~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          246 ESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEEEETTEEEEEECSST
T ss_pred             EEEEEEcCCCCEEEEECCCC
Confidence            774444 4555555554433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.73  E-value=0.038  Score=53.55  Aligned_cols=223  Identities=7%  Similarity=-0.017  Sum_probs=131.7

Q ss_pred             EEEEEcCCcEEEEEcCCCeeE-EEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cC
Q 014007           99 CFAAGTDHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR  175 (432)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~  175 (432)
                      +|+.+..+.|+..+++..... ....+  ..-..+.+++|++ ++..+.+....     +.|+.++.........+. .-
T Consensus       319 ~Ll~~~~~~i~~i~l~~~~~~~~~~~~--~~l~~~~~ld~d~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~v~~~~~  391 (619)
T 3s94_A          319 LLLLARRTDLRRISLDTPDFTDIVLQL--EDIRHAIAIDYDPVEGYIYWTDDEV-----RAIRRSFIDGSGSQFVVTAQI  391 (619)
T ss_dssp             EEEEEESSCEEEEESSSTTCCCEECCC--SCCSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSC
T ss_pred             EEEEEcccceEEEecCCCccceeEEec--cccCccEEEEEEcCCCeEEEEeCCC-----CeEEEEEcCCCccEEEEECCC
Confidence            566666666777777654321 11112  1334577888887 45555554444     899999976544333333 33


Q ss_pred             CceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc
Q 014007          176 SEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (432)
Q Consensus       176 ~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~  250 (432)
                      ....++++... +.+..+   .+.|.+.++... ....+. ..-.....+++.|....++++-.| ..+.|...+++...
T Consensus       392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g-~~~~I~r~~~dG~~  469 (619)
T 3s94_A          392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMVGYMYWTDWG-EIPKIERAALDGSD  469 (619)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCCSEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCS
T ss_pred             CCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCCCcEEEecCC-CCCEEEEEccCCCc
Confidence            56788999864 444444   468999997643 333332 223345679999987777765433 35678777877754


Q ss_pred             eeeee-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeE
Q 014007          251 TKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTV  327 (432)
Q Consensus       251 ~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i  327 (432)
                      ...+. ..-.....|++++++..|+.+. ..+. |..+++.... .+.+... .-....+|+...+  +|+.+. ..+.|
T Consensus       470 ~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~-I~~~~~dG~~-~~~~~~~-~l~~P~glav~~~--~ly~tD~~~~~I  544 (619)
T 3s94_A          470 RVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK-IEVMNTDGTG-RRVLVED-KIPHIFGFTLLGD--YVYWTDWQRRSI  544 (619)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEESSSCC-CEEEEEC-CCCSSCCEEEETT--EEEEECTTSSCE
T ss_pred             cEEEEeCCCCCCeeeEEcccCCEEEEEECCCCE-EEEEecCCCc-eEEEecc-CCCCcEEEEEECC--EEEEeecCCCeE
Confidence            44433 3345678999998766666654 4456 9999975433 3333211 1122345565433  454444 56677


Q ss_pred             EEEEecCC
Q 014007          328 HVFNLKVN  335 (432)
Q Consensus       328 ~iwd~~~~  335 (432)
                      ...|..++
T Consensus       545 ~~~~k~~g  552 (619)
T 3s94_A          545 ERVHKRSA  552 (619)
T ss_dssp             EEEESSSC
T ss_pred             EEEEcCCC
Confidence            77777666

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.73  E-value=0.002  Score=66.60  Aligned_cols=219  Identities=11%  Similarity=0.113  Sum_probs=135.3

Q ss_pred             cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecC
Q 014007          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD  186 (432)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  186 (432)
                      .|.|.|+........+.+.  -    -+...+|....++--. .     .++.|+|+++...++.+....+|.--.|-.+
T Consensus        49 ~vvIidl~~~~~~~rrpi~--A----dsAIMnP~~~iiALra-g-----~~lQiFnl~~k~klks~~~~e~VvfWkWis~  116 (1630)
T 1xi4_A           49 QVVIIDMNDPSNPIRRPIS--A----DSAIMNPASKVIALKA-G-----KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL  116 (1630)
T ss_pred             eEEEEECCCCCCccccccc--c----hhhccCCCcceEEEec-C-----CeEEEeehHHhhhhcccccCCCceEEEecCC
Confidence            3888888765554333332  1    2222344444444332 2     7999999999999998887888888888765


Q ss_pred             ccE-EEeCCeEEEEEcCC-CeeeEEEeec----cCCcceEEEecCCCcEEEEee----cCCCCcEEEEEccCCceeeeec
Q 014007          187 RII-VVLEQKIFVYNFAD-LKLLHQIETI----ANPKGLCAVSQGVGSLVLVCP----GLQKGQVRVEHYASKRTKFIMA  256 (432)
Q Consensus       187 ~~~-~~~d~~i~i~d~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----g~~d~~i~i~d~~~~~~~~~~~  256 (432)
                      ..+ ++++..|+.|++.. ..+.+.+.-|    ...|-....+++.+.++++.-    |...|.+.+|..+.+..+.+.+
T Consensus       117 ~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ieg  196 (1630)
T 1xi4_A          117 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG  196 (1630)
T ss_pred             CeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhH
Confidence            544 45799999999964 2333333322    223334455666666654432    2356899999998888888888


Q ss_pred             cCCceeEEEEcC--C-CCEEEEEcC---CCceEEEEECCCC---ce------EEEE-EeCCCcCceEEEEECCCCCEEEE
Q 014007          257 HDSRIACFALTQ--D-GQLLATSST---KGTLVRIFNTLDG---TL------LQEV-RRGADRAEIYSLAFSSNAQWLAV  320 (432)
Q Consensus       257 ~~~~i~~~~~sp--~-~~~l~~~~~---dg~~i~vwd~~~~---~~------~~~~-~~~~~~~~i~~~~~s~~~~~l~~  320 (432)
                      |...-..+....  . ...++.+..   .+. ++|-++...   ..      +..+ .......-..++..|+.-..+..
T Consensus       197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k-Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~  275 (1630)
T 1xi4_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  275 (1630)
T ss_pred             hHhhhheeccCCCCCCceEEEEEEecCCCce-EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence            876655544431  1 223332222   256 888887542   11      1111 11011234567778887778888


Q ss_pred             EeCCCeEEEEEecCCCCC
Q 014007          321 SSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       321 ~~~dg~i~iwd~~~~~~~  338 (432)
                      .+.-|.|++||+.++.++
T Consensus       276 itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          276 ITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             EecCceEEEEecccchhh
Confidence            899999999999999854

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.73  E-value=0.063  Score=55.94  Aligned_cols=276  Identities=11%  Similarity=0.084  Sum_probs=148.4

Q ss_pred             CCCeEEEEEcCC------CCEEEEEc--CCcEEEEEcCCCeeEEEeecccC-cceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           85 PPTLLHISFNQD------HGCFAAGT--DHGFRIYNCDPFREIFRRDFERG-GGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        85 ~~~v~~~~~s~~------~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ...|.|+++.|.      ++++++|.  |+.|+|+++++.+......+... ....+ .+.......++..|-.|     
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si-~l~~~~~~~~L~igl~d-----  626 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSI-LMTTFESSHYLLCALGD-----  626 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEE-EEEEETTEEEEEEEETT-----
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEE-EEEEeCCCcEEEEEeCC-----
Confidence            457999999863      36888887  55699999988776655555311 11122 22222345667777777     


Q ss_pred             CeEEEEeC--CCCceeEE--ee-cCCceEEEEEecCcc--EEE-eCCeEEEEEcCCCeeeEEEeeccCCc-ceEEEecC-
Q 014007          156 NKVMIWDD--HQSRCIGE--LS-FRSEVRSVKLRRDRI--IVV-LEQKIFVYNFADLKLLHQIETIANPK-GLCAVSQG-  225 (432)
Q Consensus       156 ~~v~iwd~--~~~~~~~~--~~-~~~~v~~~~~~~~~~--~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~-  225 (432)
                      |.+..+.+  .+|+....  .. ...++.-..+...+.  .++ ++.-..+|.-+ ++.... ......+ ....|+.. 
T Consensus       627 G~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~  704 (1158)
T 3ei3_A          627 GALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDG  704 (1158)
T ss_dssp             SEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSS
T ss_pred             CeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCccc
Confidence            88765544  44544322  22 344555444544332  222 35555555433 332211 1111222 23445332 


Q ss_pred             -CCcEEEEeecCCCCcEEEEEccCC-ce-eeeeccCCceeEEEEcCCCCEEEEEcC------------------------
Q 014007          226 -VGSLVLVCPGLQKGQVRVEHYASK-RT-KFIMAHDSRIACFALTQDGQLLATSST------------------------  278 (432)
Q Consensus       226 -~~~~~~~~~g~~d~~i~i~d~~~~-~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~------------------------  278 (432)
                       .+.++++    .++.++|..++.- .. .....-...+..++++|+.+.++.+..                        
T Consensus       705 ~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (1158)
T 3ei3_A          705 YPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS  780 (1158)
T ss_dssp             STTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE
T ss_pred             CCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh
Confidence             2334333    2456888877542 11 111123456777888876665443321                        


Q ss_pred             -------------------------CCceEEEEECCCCceEEEEEeCCCcCceEEEE---ECCC-CCEEEEEe-------
Q 014007          279 -------------------------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA---FSSN-AQWLAVSS-------  322 (432)
Q Consensus       279 -------------------------dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~---~s~~-~~~l~~~~-------  322 (432)
                                               -+. |++.|-.+.+.+..+.... ...+.+++   |..+ ..+|++|+       
T Consensus       781 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~-i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e  858 (1158)
T 3ei3_A          781 SSVSSSKLFSSSTAPHETSFGEEVEVHN-LLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEE  858 (1158)
T ss_dssp             EEECCCCCC----------CCCEEEEEE-EEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred             hcccccccccccccCchhhcCCceeeEE-EEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence                                     123 7888888888887777543 23445544   4333 46888876       


Q ss_pred             ---CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe
Q 014007          323 ---DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG  399 (432)
Q Consensus       323 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  399 (432)
                         ..|.|++|++...+ +                  .               +..-...++.|++++-- +|++|+.. 
T Consensus       859 ~~~~~Gri~vf~v~~~k-L------------------~---------------lv~~~~v~g~v~al~~~-~g~Lla~i-  902 (1158)
T 3ei3_A          859 AEPKQGRIVVFQYSDGK-L------------------Q---------------TVAEKEVKGAVYSMVEF-NGKLLASI-  902 (1158)
T ss_dssp             SSCCCEEEEEEEEETTE-E------------------E---------------EEEEEEESSCEEEEEEE-TTEEEEEE-
T ss_pred             CCCCceEEEEEEEECCE-E------------------E---------------EEEEEEcCCcCEEEeee-CCEEEEEc-
Confidence               24788888887332 0                  0               11122235678777632 45444433 


Q ss_pred             cCCeEEEEEecC
Q 014007          400 MDGSFYRCQFDP  411 (432)
Q Consensus       400 ~dg~v~iw~~~~  411 (432)
                       ..+|++|++..
T Consensus       903 -g~~l~vy~l~~  913 (1158)
T 3ei3_A          903 -NSTVRLYEWTT  913 (1158)
T ss_dssp             -TTEEEEEEECT
T ss_pred             -CCEEEEEECCC
Confidence             47899999954

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.73  E-value=0.023  Score=50.87  Aligned_cols=229  Identities=12%  Similarity=0.050  Sum_probs=121.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc--cCcceeEEEEeeeCC----eEEEecCCCCCCCCCCeE
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCN----ILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~~~s~~~d~~~~~~~v  158 (432)
                      -..-..|+|.|+|+++++-..+.|++++  .++......+.  .........++++++    +.+.++......-..+.|
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            3456799999999977776665588887  33322212211  123456788999997    444443221000000467


Q ss_pred             EEEeCCCCc-----ee-EEeec----CCceEEEEEecCccEEEeC----------------CeEEEEEcCCC--------
Q 014007          159 MIWDDHQSR-----CI-GELSF----RSEVRSVKLRRDRIIVVLE----------------QKIFVYNFADL--------  204 (432)
Q Consensus       159 ~iwd~~~~~-----~~-~~~~~----~~~v~~~~~~~~~~~~~~d----------------~~i~i~d~~~~--------  204 (432)
                      ..|+...+.     .+ ..+..    ......++|.|||.+.+++                +.|..++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            778766432     11 11221    1234689999999776653                35655654320        


Q ss_pred             ----eeeEEE-eeccCCcceEEEecCCCcEEEEeecCCCC-------cEEEEEccC-----------------Cceeeee
Q 014007          205 ----KLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKG-------QVRVEHYAS-----------------KRTKFIM  255 (432)
Q Consensus       205 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-------~i~i~d~~~-----------------~~~~~~~  255 (432)
                          .....+ .++.+ ...++|+++...++++-.| .+.       .|.+..-..                 .....+ 
T Consensus       188 ~~~~~~~~i~a~G~rn-p~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-  264 (352)
T 2ism_A          188 GRRGARPEVYSLGHRN-PQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-  264 (352)
T ss_dssp             TCTTSCTTEEEECCSE-ECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred             CCCCCCccEEEEcCCC-cccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence                011111 12222 2468899965566666544 232       233332111                 011111 


Q ss_pred             ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce------EEEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL------LQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       256 ~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      .+......++| .+|.++++.-..+. |...++.....      ...+..  ....+..+++.|||.++++..
T Consensus       265 ~~~~ap~G~~~-~~G~l~v~~~~~~~-v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 PQGFPPGNLAF-FRGDLYVAGLRGQA-LLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TTCCCEEEEEE-ETTEEEEEETTTTE-EEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCCcceEE-ECCEEEEEECCCCE-EEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence            22234567777 46776666555666 77777654331      122222  225789999999998776654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.59  E-value=0.034  Score=49.17  Aligned_cols=230  Identities=10%  Similarity=-0.001  Sum_probs=121.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc-cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      ...+.+|.|++ +..++++..+.|.. ..+.++ ....... ......+..+.+.+++..++.+..      +.|..- .
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------g~v~~S-~  148 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQ-SWSQIPLDPKLPGSPRLIKALGNGSAEMITNV------GAIYRT-K  148 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTS-SCEECCCCTTCSSCEEEEEEEETTEEEEEETT------CCEEEE-S
T ss_pred             CccEEEEEecC-CeEEEEECCCeEEE-ECCCCC-CceECccccCCCCCeEEEEEECCCCEEEEeCC------ccEEEE-c
Confidence            44688999986 55566655543332 333222 1111110 012234566766666666665543      544332 1


Q ss_pred             CCCceeEEee--cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeecCCC
Q 014007          164 HQSRCIGELS--FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQK  238 (432)
Q Consensus       164 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (432)
                      ..|+.-....  ....+..+.+.+++.+++.  ++.++.-+-..++.-..+. .....+..+.+.+++. ++++.   .+
T Consensus       149 DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-~~~~~---~~  224 (327)
T 2xbg_A          149 DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-LWMIV---NG  224 (327)
T ss_dssp             STTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-EEEEE---TT
T ss_pred             CCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-EEEEe---CC
Confidence            2343332232  4567889999999887774  4554443211122222221 2234455677777764 34332   46


Q ss_pred             CcEEEEEccCCce-eeee----ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEEC
Q 014007          239 GQVRVEHYASKRT-KFIM----AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFS  312 (432)
Q Consensus       239 ~~i~i~d~~~~~~-~~~~----~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s  312 (432)
                      |.+++.+.+.+.. ..+.    .+...+.++.+.+++.+++++. ++. | ++....++.-..+... .....+.++.|.
T Consensus       225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~-i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~  301 (327)
T 2xbg_A          225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGA-L-LCSQDGGQTWQQDVDVKKVPSNFYKILFF  301 (327)
T ss_dssp             TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTC-E-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred             ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCe-E-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence            7777664332211 1111    1234588999998887766654 676 6 4444555544444321 123567889887


Q ss_pred             CCCCEEEEEeCCCeEEEEEe
Q 014007          313 SNAQWLAVSSDKGTVHVFNL  332 (432)
Q Consensus       313 ~~~~~l~~~~~dg~i~iwd~  332 (432)
                      ++++ +++++.+|.|.-++-
T Consensus       302 ~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          302 SPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             ETTE-EEEECSTTEEEEECC
T ss_pred             CCCc-eEEEcCCceEEEEcC
Confidence            6555 556667898776654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.53  E-value=0.037  Score=48.12  Aligned_cols=230  Identities=10%  Similarity=0.085  Sum_probs=112.6

Q ss_pred             CCCEEEEEc-C------CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-
Q 014007           96 DHGCFAAGT-D------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-  167 (432)
Q Consensus        96 ~~~~l~~~~-~------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-  167 (432)
                      ++.+++.|+ .      +.+.+||..+.+-.....+.  ....-..+....+..++++|..+ ......+.+||..+++ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~l~v~GG~~~-~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT--RKRRYVASVSLHDRIYVIGGYDG-RSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEECCBCS-SCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCC--hhhccccEEEECCEEEEEcCCCC-CccCceEEEEECCCCCC
Confidence            445666665 2      23888998776644333332  11111222233444455544321 1112579999988765 


Q ss_pred             --eeEE--eecCCceEEEEEecCccEEEeC--------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007          168 --CIGE--LSFRSEVRSVKLRRDRIIVVLE--------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       168 --~~~~--~~~~~~v~~~~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                        -...  +.....-.++... ++.+++..        ..+.+||+.+.+-...-..........+...+ +.++++ +|
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~-GG  167 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVAS-GVIYCL-GG  167 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEET-TEEEEE-CC
T ss_pred             CeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEEC-CEEEEE-CC
Confidence              2222  2211112222332 44444432        36899998876533221111111112222223 445443 34


Q ss_pred             CC----CCcEEEEEccCCceeeeeccCC---ceeEEEEcCCCCEEEEEcCC-----CceEEEEECCCCceEEEEEeCCCc
Q 014007          236 LQ----KGQVRVEHYASKRTKFIMAHDS---RIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTLLQEVRRGADR  303 (432)
Q Consensus       236 ~~----d~~i~i~d~~~~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~~~~~~~~~~~~~~~  303 (432)
                      ..    ...+.+||..+..-..+.....   .-..+.+  ++++++.|+.+     .. +.+||+.+.+-...-......
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~~r  244 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSS-VEAYNIRTDSWTTVTSMTTPR  244 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEEECCCSSCC
T ss_pred             CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccce-EEEEeCCCCcEEECCCCCCcc
Confidence            21    2568889988765444322111   1122222  67777887764     35 899999877543321111111


Q ss_pred             CceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007          304 AEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (432)
Q Consensus       304 ~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  336 (432)
                      .....+.+  ++++++.|+.+     ..+.+||+++.+
T Consensus       245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          245 CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            11222232  67777777754     457888887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.51  E-value=0.048  Score=48.82  Aligned_cols=231  Identities=10%  Similarity=0.038  Sum_probs=123.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc--cCcceeEEEEeeeCC----eEEEecCCC--CCCCCCC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCN----ILALVGGGP--DPQYPLN  156 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~~~s~~~--d~~~~~~  156 (432)
                      -.....|+|.|+|+++++-..+.|++++. .++ .....+.  .........++++++    +.+.++...  ...-...
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34578999999999777766756888863 333 2112211  123456788999986    554444321  0000003


Q ss_pred             eEEEEeCCCC-------cee-EEee--cCCceEEEEEecCccEEEeC----------------CeEEEEEcCCCee----
Q 014007          157 KVMIWDDHQS-------RCI-GELS--FRSEVRSVKLRRDRIIVVLE----------------QKIFVYNFADLKL----  206 (432)
Q Consensus       157 ~v~iwd~~~~-------~~~-~~~~--~~~~v~~~~~~~~~~~~~~d----------------~~i~i~d~~~~~~----  206 (432)
                      .|..|+...+       +.+ ..+.  .......|+|.|||.+.++.                +.|..++.. ++.    
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~n  184 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADN  184 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCC
Confidence            5777776543       111 1122  12235679999999877642                345555543 321    


Q ss_pred             ----eEEE-eeccCCcceEEEecCCCcEEEEeecCCCC--cEEEEEccC-----------------CceeeeeccCCcee
Q 014007          207 ----LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYAS-----------------KRTKFIMAHDSRIA  262 (432)
Q Consensus       207 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~-----------------~~~~~~~~~~~~i~  262 (432)
                          ...+ .++.++ ..++|+++...++++-.+ .+.  .|.+..-..                 .....+........
T Consensus       185 pf~~~~i~a~G~rnp-~Gla~d~~~g~l~v~d~g-~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~  262 (354)
T 3a9g_A          185 PFPNSPIWSYGHRNP-QGIDWHRASGVMVATEHG-PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS  262 (354)
T ss_dssp             SSTTCCEEEECCSCC-CEEEECTTTCCEEEEECC-SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred             CCCCCcEEEEccCCc-ceEEEeCCCCCEEEEecC-CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence                1111 223333 468899955566665433 222  233322110                 01111111233567


Q ss_pred             EEEEc-------CCCCEEEEEcCCCceEEEEECCCC-ceE--EEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007          263 CFALT-------QDGQLLATSSTKGTLVRIFNTLDG-TLL--QEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       263 ~~~~s-------p~~~~l~~~~~dg~~i~vwd~~~~-~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      .++|.       .+|.++++.-..+. |...++... +..  ..+... ....+..+++.|||.++++..
T Consensus       263 G~~~y~g~~fp~~~G~l~v~~~~~~~-v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGWLLIACLRGSM-LAAVNFGDNMEVRKISTFFKN-VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEECCSSSCGGGTTEEEEEETTTTE-EEEEEECGGGCEEEEEEECTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred             ceEEECCCCCcccCCcEEEEEcCCCE-EEEEEECCCCcccceeeeccC-CCCCeeEEEECCCCcEEEEEe
Confidence            88883       46777766666667 888888753 332  222211 135789999999998766654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.50  E-value=0.0041  Score=64.41  Aligned_cols=233  Identities=13%  Similarity=0.163  Sum_probs=145.2

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEee-eCCeEEEecCCCCCCCCCCeEEEEeCCC-Cc
Q 014007           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQ-SR  167 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~~~~~~v~iwd~~~-~~  167 (432)
                      +.-.+|..+.+|.-....++|||+++........+    ...|+-+.| +++...++|.        ..|+-|++.. ..
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~----~e~VvfWkWis~~~l~lVT~--------~aVyHW~~~~~s~  137 (1630)
T 1xi4_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQ  137 (1630)
T ss_pred             hhccCCCcceEEEecCCeEEEeehHHhhhhccccc----CCCceEEEecCCCeeEEEcC--------CeEEEeccCCCCc
Confidence            34568888888887766699999987766633333    346777777 5566777776        6899999864 24


Q ss_pred             eeEEee-c----CCceEEEEEecCccEEEe----------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecC--CCcEE
Q 014007          168 CIGELS-F----RSEVRSVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG--VGSLV  230 (432)
Q Consensus       168 ~~~~~~-~----~~~v~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  230 (432)
                      +++.+. |    ...|..-..+++.++++.          .|.+.+|..+. +..+.+++|......+.+.-+  ...++
T Consensus       138 P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          138 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEE
Confidence            444444 3    456777777888887762          57888998764 334455555544433333211  11121


Q ss_pred             -EEeecCCCCcEEEEEccCC-----ce-----eeeec---cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007          231 -LVCPGLQKGQVRVEHYASK-----RT-----KFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (432)
Q Consensus       231 -~~~~g~~d~~i~i~d~~~~-----~~-----~~~~~---~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~  296 (432)
                       ++.-....+.++|.++...     ..     ..+..   ...-..++..++.-..+..-+.-|. |.++|+.++.++..
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~-~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYM  295 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce-EEEEecccchhhhh
Confidence             1111112368888887542     10     01111   1333457777877778888889999 99999999999876


Q ss_pred             EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      -+.  ...+|...+-+....-++.....|.|.--.+.....+
T Consensus       296 ~ri--s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          296 NRI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             ccc--cCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence            553  2355555555544344555557888777777766543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.49  E-value=0.007  Score=54.51  Aligned_cols=133  Identities=17%  Similarity=0.155  Sum_probs=90.1

Q ss_pred             eCCeEEEEEcCCCeeeEEEeec----cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-------------eeee
Q 014007          192 LEQKIFVYNFADLKLLHQIETI----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-------------TKFI  254 (432)
Q Consensus       192 ~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-------------~~~~  254 (432)
                      .++.||.-++......+.++..    ...+..+.++|+|+.+++.  |  +..|.|..+..+.             .+.+
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~--g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty  114 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF--N--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY  114 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE--C--SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe--c--CCeEEEEEecCccccCcccccccccceeEE
Confidence            5888998888755445555543    2256779999999977654  3  5788888877211             1122


Q ss_pred             ec------cCCceeEEEEcC---CCCEEEEEcCCCceEEEEECCCCc--eEEEEE-------eCCCcCceEEEEECCCCC
Q 014007          255 MA------HDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTLDGT--LLQEVR-------RGADRAEIYSLAFSSNAQ  316 (432)
Q Consensus       255 ~~------~~~~i~~~~~sp---~~~~l~~~~~dg~~i~vwd~~~~~--~~~~~~-------~~~~~~~i~~~~~s~~~~  316 (432)
                      .-      ...+|..+.|||   .+..|++-..|+. ||+||+....  +. .++       .......|.+++|..++-
T Consensus       115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l  192 (452)
T 3pbp_A          115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL  192 (452)
T ss_dssp             EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred             EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc
Confidence            21      256799999999   4568999999999 9999998521  11 222       112225789999999887


Q ss_pred             EEEEEe--CCCeEEEE
Q 014007          317 WLAVSS--DKGTVHVF  330 (432)
Q Consensus       317 ~l~~~~--~dg~i~iw  330 (432)
                      .|...+  ..|.|+-.
T Consensus       193 TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          193 TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CEEEEECTTSCEEEEE
T ss_pred             EEEEEecCCCCCEEEE
Confidence            666654  77877654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.44  E-value=0.06  Score=48.19  Aligned_cols=192  Identities=11%  Similarity=0.075  Sum_probs=106.0

Q ss_pred             eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-eeEEee----cCCceEEEEEecC----ccEEEe--C-----
Q 014007          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELS----FRSEVRSVKLRRD----RIIVVL--E-----  193 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-~~~~~~----~~~~v~~~~~~~~----~~~~~~--d-----  193 (432)
                      .....++|.+++.++++.. +     +.|++++ .+++ .+..+.    .......|+++|+    +.+.++  .     
T Consensus        29 ~~P~~ia~~pdG~l~V~e~-~-----g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~  101 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTER-P-----GRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG  101 (354)
T ss_dssp             SCEEEEEEEETTEEEEEET-T-----TEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred             CCCeEEEEcCCCeEEEEeC-C-----CEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence            3457888999988777644 3     8999997 4554 222221    2356889999997    444442  2     


Q ss_pred             ---CeEEEEEcCCC--e-----ee-EEEee-ccCCcceEEEecCCCcEEEEeecC------------CCCcEEEEEccCC
Q 014007          194 ---QKIFVYNFADL--K-----LL-HQIET-IANPKGLCAVSQGVGSLVLVCPGL------------QKGQVRVEHYASK  249 (432)
Q Consensus       194 ---~~i~i~d~~~~--~-----~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~------------~d~~i~i~d~~~~  249 (432)
                         +.|..|+....  .     .+ ..+.. ..+....++|.|+|. ++++. |.            ..|.|..++.+..
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~-G~~~~~~~~~d~~~~~G~I~ri~~dG~  179 (354)
T 3a9g_A          102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITT-GDAADPRLAQDLSSLAGKILRVDEEGR  179 (354)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEEC-CCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred             CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEE-CCCCCCccccCCCCCCeEEEEEcCCCC
Confidence               56778876543  1     11 11221 112335699999984 66554 32            1245666665543


Q ss_pred             --------ceeee-eccCCceeEEEEcC-CCCEEEEEcCCC--ceEEEEECCCCc------------------eEEEEEe
Q 014007          250 --------RTKFI-MAHDSRIACFALTQ-DGQLLATSSTKG--TLVRIFNTLDGT------------------LLQEVRR  299 (432)
Q Consensus       250 --------~~~~~-~~~~~~i~~~~~sp-~~~~l~~~~~dg--~~i~vwd~~~~~------------------~~~~~~~  299 (432)
                              ....+ .++ .....++|+| +|+++++-...+  ..|.+.  ..+.                  .+..+. 
T Consensus       180 ~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~-  255 (354)
T 3a9g_A          180 PPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTG-  255 (354)
T ss_dssp             CCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred             CCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecC-
Confidence                    11122 233 2356899999 676555433221  113332  2221                  111220 


Q ss_pred             CCCcCceEEEEEC-------CCCCEEEEEeCCCeEEEEEecCC
Q 014007          300 GADRAEIYSLAFS-------SNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       300 ~~~~~~i~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      . .......++|.       .+|.++++.-..+.|...++...
T Consensus       256 ~-~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          256 S-ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             T-CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred             C-CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence            1 12457888884       56777766667778888887653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.26  E-value=0.097  Score=46.78  Aligned_cols=239  Identities=9%  Similarity=0.028  Sum_probs=123.6

Q ss_pred             CCeEEEEEcCCCC-EEEEEcCCcEEEEEcCCCeeE-EEeec---ccCcceeEEEEeeeCC----eEEEecCCCCCCC--C
Q 014007           86 PTLLHISFNQDHG-CFAAGTDHGFRIYNCDPFREI-FRRDF---ERGGGIGVVEMLFRCN----ILALVGGGPDPQY--P  154 (432)
Q Consensus        86 ~~v~~~~~s~~~~-~l~~~~~~~i~iw~~~~~~~~-~~~~~---~~~~~~~v~~~~~~~~----~~~~~s~~~d~~~--~  154 (432)
                      .....|+|.|+|+ ++++-..+.|++++.+. ... ....+   ..........++++|+    +.+.++......-  .
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            4568999999999 77666565588887432 211 00111   0122345688999984    4444442210000  0


Q ss_pred             CCeEEEEeCCCC--c--eeEE-ee-c------CCceEEEEEecCccEEEe--C--------------CeEEEEEcCCCe-
Q 014007          155 LNKVMIWDDHQS--R--CIGE-LS-F------RSEVRSVKLRRDRIIVVL--E--------------QKIFVYNFADLK-  205 (432)
Q Consensus       155 ~~~v~iwd~~~~--~--~~~~-~~-~------~~~v~~~~~~~~~~~~~~--d--------------~~i~i~d~~~~~-  205 (432)
                      ...|..|++..+  .  .... +. .      ......|.|.|||.+.++  |              +.|.-++.. ++ 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~  175 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEI  175 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCC
Confidence            035777766432  1  1111 11 1      122467999999976664  2              356666654 22 


Q ss_pred             ------------eeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-----------------------
Q 014007          206 ------------LLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----------------------  249 (432)
Q Consensus       206 ------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-----------------------  249 (432)
                                  ....+. ++.+ ...++|++....++++-.+ .++.=.|.-+..+                       
T Consensus       176 p~~npf~~~~~~~~~i~a~G~rn-p~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIRN-PQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCSE-EEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCCcCCCCCCccEEEEcCcC-ccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence                        111221 2222 3468888855566655433 2221122211110                       


Q ss_pred             ---------ceeeeeccCCceeEEEEcC-------CCCEEEEEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEEC
Q 014007          250 ---------RTKFIMAHDSRIACFALTQ-------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFS  312 (432)
Q Consensus       250 ---------~~~~~~~~~~~i~~~~~sp-------~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s  312 (432)
                               ....+ .+...+..+.|..       +|.++++.-..+. |...++..++.......- .....+..+++.
T Consensus       254 ~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~  331 (353)
T 2g8s_A          254 GEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKD-VIVMSVNGDKVTEDGRILTDRGQRIRDVRTG  331 (353)
T ss_dssp             BSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred             CCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCE-EEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence                     00111 1223566777763       4677766666666 888887766544332211 112478999999


Q ss_pred             CCCCEEEEEe-CCCeEEEEEe
Q 014007          313 SNAQWLAVSS-DKGTVHVFNL  332 (432)
Q Consensus       313 ~~~~~l~~~~-~dg~i~iwd~  332 (432)
                      |||.++++.. .+|  +||.+
T Consensus       332 pdG~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          332 PDGYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             TTSCEEEEECSTTE--EEEEE
T ss_pred             CCCcEEEEEeCCCC--EEEEE
Confidence            9998666543 345  44444

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.22  E-value=0.21  Score=49.88  Aligned_cols=234  Identities=9%  Similarity=0.001  Sum_probs=129.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc------cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      ...|.++.-..+|.+.+.. .+|+..++..+.+......+.      .-....|.++....++.+-++..       +-+
T Consensus       323 ~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~-------~GL  394 (758)
T 3ott_A          323 GNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATD-------GSI  394 (758)
T ss_dssp             CCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEET-------TEE
T ss_pred             CceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeC-------CcH
Confidence            3468888888888766554 567777765432111000110      01234577887777765554433       678


Q ss_pred             EEEeCCCCceeEEee-------cCCceEEEEEecCccEEE-e-CCeEEEEEcCCC-----eee---EEEeec----cCCc
Q 014007          159 MIWDDHQSRCIGELS-------FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADL-----KLL---HQIETI----ANPK  217 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~-----~~~---~~~~~~----~~~~  217 (432)
                      ..||..+++......       ....|.++....++.+.+ + ++-|.++|..+.     ...   ..+...    ...+
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i  474 (758)
T 3ott_A          395 NRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFI  474 (758)
T ss_dssp             EEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCE
T ss_pred             hhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccccccee
Confidence            999987765433211       124578888877776555 4 567888886431     111   111111    1234


Q ss_pred             ceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeecc----CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce
Q 014007          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~  293 (432)
                      ..+....++. +.++. |+ .+-|..+|..++....+...    ...+.++....+|.+.+ |+.. . |..||..+++.
T Consensus       475 ~~i~~d~~g~-lWi~~-~t-~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~-G-l~~~~~~~~~~  548 (758)
T 3ott_A          475 NQIIPDNEGN-VWVLL-YN-NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHG-G-VMRINPKDESQ  548 (758)
T ss_dssp             EEEEECTTSC-EEEEE-TT-CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETT-E-EEEECC--CCC
T ss_pred             eeEEEcCCCC-EEEEc-cC-CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecC-c-eEEEecCCCce
Confidence            4555555554 44321 32 35578888877666554321    24678888888887664 4444 4 88898766543


Q ss_pred             EEEEE-eCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          294 LQEVR-RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       294 ~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      .. +. .+.....|.++... +|. |..++..| |..||..+.+
T Consensus       549 ~~-~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~  588 (758)
T 3ott_A          549 QS-ISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMD  588 (758)
T ss_dssp             CB-CCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCC
T ss_pred             EE-ecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCce
Confidence            21 11 11112457888764 665 44455555 7788887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.22  E-value=0.1  Score=46.38  Aligned_cols=192  Identities=12%  Similarity=0.134  Sum_probs=105.6

Q ss_pred             EEEeeeCCeEEEecCC-CCCC------CCCCeEEEEeCCCC-ceeEEeec--------CCceEEEEEec--Ccc--EEEe
Q 014007          133 VEMLFRCNILALVGGG-PDPQ------YPLNKVMIWDDHQS-RCIGELSF--------RSEVRSVKLRR--DRI--IVVL  192 (432)
Q Consensus       133 ~~~~~~~~~~~~~s~~-~d~~------~~~~~v~iwd~~~~-~~~~~~~~--------~~~v~~~~~~~--~~~--~~~~  192 (432)
                      -++...+++.++++++ ..|.      -.+|.|.++|..+. .....+..        .-....+.+.+  ++.  +++.
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv  132 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  132 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence            3444566777766652 0000      01399999998742 12233331        23677888766  342  3333


Q ss_pred             -----CCeEEEEEcCCC-ee---eEEEeec-cCCcceEEEecCCCcEEEEeec---------------CCCCcEEEEEcc
Q 014007          193 -----EQKIFVYNFADL-KL---LHQIETI-ANPKGLCAVSQGVGSLVLVCPG---------------LQKGQVRVEHYA  247 (432)
Q Consensus       193 -----d~~i~i~d~~~~-~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g---------------~~d~~i~i~d~~  247 (432)
                           +..|.+|++... ..   +..+... -...+.+.+.++|. +++....               ...|.|..+|. 
T Consensus       133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence                 457788776543 22   2223221 12345678888875 2222110               01244444444 


Q ss_pred             CCceeeeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCC-Cce--EEEEEeCCCcCceEEEEECC-CCCEEEEEe
Q 014007          248 SKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLD-GTL--LQEVRRGADRAEIYSLAFSS-NAQWLAVSS  322 (432)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~-~~~--~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~  322 (432)
                       +.+..+...-...+.++|+||++.|+.+. ..+. |+.|++.. ++.  ...+.   .....-.+++.+ +|.+.+++.
T Consensus       211 -~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~-I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          211 -NDVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             -TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEE
T ss_pred             -CeEEEeecCCcccCcceECCCCCEEEEEeCCCCe-EEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEec
Confidence             34444444445678999999998877665 4566 99999863 433  22342   236678899999 598877665


Q ss_pred             CC-CeEEEEE
Q 014007          323 DK-GTVHVFN  331 (432)
Q Consensus       323 ~d-g~i~iwd  331 (432)
                      .+ +.|..|+
T Consensus       286 ~~g~~v~~~~  295 (355)
T 3sre_A          286 PNGMRIFFYD  295 (355)
T ss_dssp             SCHHHHHSCC
T ss_pred             CCceEEEEEC
Confidence            33 3444443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.19  E-value=0.097  Score=45.47  Aligned_cols=229  Identities=15%  Similarity=0.188  Sum_probs=109.8

Q ss_pred             CCEEEEEc-C----CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEE
Q 014007           97 HGCFAAGT-D----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE  171 (432)
Q Consensus        97 ~~~l~~~~-~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~  171 (432)
                      +.+++.|+ +    +.+.+||..+.+-.....+.  ....-..+....+..++++| .+.......+.+||..+.+-...
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~lyv~GG-~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELP--SRRCRAGMVYMAGLVFAVGG-FNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCS--SCCBSCEEEEETTEEEEESC-BCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCC--cccccceEEEECCEEEEEeC-cCCCccccceEEECCCCCceeeC
Confidence            44555555 2    23888998776644333333  11111122233444445444 33111225789999887653222


Q ss_pred             --eecCCceEEEEEecCccEEEe---C-----CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCC----
Q 014007          172 --LSFRSEVRSVKLRRDRIIVVL---E-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ----  237 (432)
Q Consensus       172 --~~~~~~v~~~~~~~~~~~~~~---d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----  237 (432)
                        +.....-.+++.. ++.+++.   +     ..+.+||+.+.+-... .....+....+....++.++++ +|..    
T Consensus        93 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~-GG~~~~~~  169 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMNTRRSSVGVGVVGGLLYAV-GGYDVASR  169 (302)
T ss_dssp             CCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEE-CCEETTTT
T ss_pred             CCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCCCcccCceEEEECCEEEEE-eCCCCCCC
Confidence              2222112233333 3443332   1     3588899887653322 1111122111111123445544 3321    


Q ss_pred             --CCcEEEEEccCCceeeeeccC---CceeEEEEcCCCCEEEEEcCCC-----ceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          238 --KGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       238 --d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~dg-----~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                        ...+.+||..+..-..+....   .....+.+  ++++++.|+.++     . +.+||..+.+-...-..........
T Consensus       170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~~~~r~~~~  246 (302)
T 2xn4_A          170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKS-VEVYDPTTNAWRQVADMNMCRRNAG  246 (302)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCC-EEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             ccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccce-EEEEeCCCCCEeeCCCCCCccccCe
Confidence              245888998875544332111   11122222  677888887643     5 8999988765432211110111112


Q ss_pred             EEEECCCCCEEEEEeCCC-----eEEEEEecCCC
Q 014007          308 SLAFSSNAQWLAVSSDKG-----TVHVFNLKVNS  336 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~  336 (432)
                      .+.  -++++++.|+.++     .+.+||+.+.+
T Consensus       247 ~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          247 VCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            222  2677777777543     48889888765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.12  E-value=0.11  Score=44.98  Aligned_cols=173  Identities=9%  Similarity=0.090  Sum_probs=84.9

Q ss_pred             CeEEEEeCCCCceeEE--eecCCceEEEEEecCccEEEeC--------CeEEEEEcCCCe---eeEEEeeccCCc-ceEE
Q 014007          156 NKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE--------QKIFVYNFADLK---LLHQIETIANPK-GLCA  221 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~d--------~~i~i~d~~~~~---~~~~~~~~~~~~-~~~~  221 (432)
                      ..+.+||..+++-...  +.....-.++... ++.+++..        ..+.+||+.+.+   -.. +.....+. ...+
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCCCccceeE
Confidence            5789999887653221  2211111223333 44444432        368999987755   222 21111111 1122


Q ss_pred             EecCCCcEEEEeecCC----CCcEEEEEccCCceeeeeccCC--ceeEEEEcCCCCEEEEEcCC-----CceEEEEECCC
Q 014007          222 VSQGVGSLVLVCPGLQ----KGQVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSSTK-----GTLVRIFNTLD  290 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~----d~~i~i~d~~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~~  290 (432)
                      ... ++.++++ +|..    ...+.+||..+..-..+.....  .-.+++. -++++++.|+.+     .. +.+||..+
T Consensus       109 ~~~-~~~lyv~-GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~-~~~~d~~~  184 (301)
T 2vpj_A          109 TTL-GDMIYVS-GGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNS-VEKYDPHT  184 (301)
T ss_dssp             EEE-TTEEEEE-CCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCC-EEEEETTT
T ss_pred             EEE-CCEEEEE-cccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccce-EEEEeCCC
Confidence            222 3445444 3422    2468888987755443322111  1112222 267777777754     34 89999887


Q ss_pred             CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  336 (432)
                      .+-...-...........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       185 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          185 GHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            754332111111111222222  66777777653     468888887764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.08  E-value=0.38  Score=50.20  Aligned_cols=171  Identities=14%  Similarity=0.169  Sum_probs=101.8

Q ss_pred             CeEEEEeCCCCceeEEee--cCCceEEEEE---ecC-ccEEE--e-----------CCeEEEEEcCCCeeeEEEe-eccC
Q 014007          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKL---RRD-RIIVV--L-----------EQKIFVYNFADLKLLHQIE-TIAN  215 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~---~~~-~~~~~--~-----------d~~i~i~d~~~~~~~~~~~-~~~~  215 (432)
                      +.|++.|..+.+.+..+.  ....+.+++.   ..+ ..+++  +           .|.|++|++..++.....+ ...+
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            458888988888777766  4455666553   222 23444  1           3689999987544322221 2344


Q ss_pred             CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC-CCce
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTL  293 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~-~~~~  293 (432)
                      ++.+++  .-+..+ +++.   ...|++|++..+...... .+-..|..+...-.+++++.|..-.. |.++..+ ....
T Consensus       887 ~v~al~--~~~g~L-la~i---g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~~~~  959 (1158)
T 3ei3_A          887 AVYSMV--EFNGKL-LASI---NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRS-VLLLAYKPMEGN  959 (1158)
T ss_dssp             CEEEEE--EETTEE-EEEE---TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBC-EEEEEEETTTTE
T ss_pred             cCEEEe--eeCCEE-EEEc---CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhhe-EEEEEEEcCCCe
Confidence            554443  333343 4443   489999999875322221 11122333333335778889888777 7765432 2334


Q ss_pred             EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       294 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      +..+........++++.|-.+ ..++.+..+|.|.++....
T Consensus       960 L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          960 FEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred             EEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence            445554456678899988655 4677788999999998865

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.99  E-value=0.16  Score=44.35  Aligned_cols=233  Identities=12%  Similarity=0.057  Sum_probs=111.1

Q ss_pred             cCCCCEEEEEcC-----CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCC---CCCCCCCeEEEEeCCC
Q 014007           94 NQDHGCFAAGTD-----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQYPLNKVMIWDDHQ  165 (432)
Q Consensus        94 s~~~~~l~~~~~-----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~~~~~~v~iwd~~~  165 (432)
                      .-++.+++.|+.     +.+.+||..+.+-.....+.  ....-.++....+..++++|..   +.......+.+||..+
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQ--VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCC--cccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            335566666651     23889998776654333332  1111112223344455554431   2111114689999887


Q ss_pred             CceeEE--eecCCceEEEEEecCccEEEe--------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007          166 SRCIGE--LSFRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       166 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      .+-...  +.....-.+++.. ++.+++.        -..+.+||+.+.+-...-..........+... ++.+++. +|
T Consensus       100 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~-GG  176 (308)
T 1zgk_A          100 NQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAV-GG  176 (308)
T ss_dssp             TEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEE-CC
T ss_pred             CeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEE-eC
Confidence            643222  2211111222233 4444443        24688999887643222111111111112222 3455544 34


Q ss_pred             CC----CCcEEEEEccCCceeeeecc---CCceeEEEEcCCCCEEEEEcCC-----CceEEEEECCCCceEEEEEeCCCc
Q 014007          236 LQ----KGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTLLQEVRRGADR  303 (432)
Q Consensus       236 ~~----d~~i~i~d~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~~~~~~~~~~~~~~~  303 (432)
                      ..    ...+.+||..+..-..+...   ...-..+.+  ++++++.|+.+     .. +.+||+.+.+-...-......
T Consensus       177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~~r  253 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNS-VERYDVETETWTFVAPMKHRR  253 (308)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEECCCCSSCC
T ss_pred             CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccce-EEEEeCCCCcEEECCCCCCCc
Confidence            22    25688899887544333211   111122333  67777787764     45 899998876543221111011


Q ss_pred             CceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007          304 AEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (432)
Q Consensus       304 ~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  336 (432)
                      .....+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       254 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          254 SALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             cceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            11222222  66777777643     457888887654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.99  E-value=0.24  Score=46.33  Aligned_cols=231  Identities=8%  Similarity=-0.018  Sum_probs=132.8

Q ss_pred             CCCCEEEEEc-CCc-EEEEEcCCCeeEEEeecccCcceeEEEEeee--CCeEEEecCCCCC----------------CCC
Q 014007           95 QDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDP----------------QYP  154 (432)
Q Consensus        95 ~~~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~----------------~~~  154 (432)
                      -||++|..-. .++ |...+++..+......+.  ....+..+.|.  |+..+++.++...                +| 
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iP--n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y-  216 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVP--NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSY-  216 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECT--TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEE-
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCC--CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhc-
Confidence            3788888877 333 888889888877555554  55566666664  5555555443320                11 


Q ss_pred             CCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe------------------------------------------
Q 014007          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------------------------------------------  192 (432)
Q Consensus       155 ~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------------------------------------------  192 (432)
                       +.....|..+.+....+...+..-.....+++.+.++                                          
T Consensus       217 -~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~  295 (638)
T 3sbq_A          217 -TMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITL  295 (638)
T ss_dssp             -EEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCC
T ss_pred             -eEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEE
Confidence             2223334444444333333333333444444444331                                          


Q ss_pred             CC-eEEEEEcCC----Ce-eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC------Cce-------ee
Q 014007          193 EQ-KIFVYNFAD----LK-LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS------KRT-------KF  253 (432)
Q Consensus       193 d~-~i~i~d~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~------~~~-------~~  253 (432)
                      +| .|.+.|.+.    +. ....+....+ -..+.++|||+++++  +|..+.++.++|++.      ..+       ..
T Consensus       296 ~g~gv~ViD~~~~~~~~~~~~~~iP~pks-PHGv~vsPDGkyi~v--~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a  372 (638)
T 3sbq_A          296 GDSKTPVLDGRKKDGKDSKFTRYVPVPKN-PHGCNTSSDGKYFIA--AGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG  372 (638)
T ss_dssp             TTCCCCEEECSCBTTBCCSSEEEEEESSS-CCCEEECTTSCEEEE--ECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE
T ss_pred             CCCCeeEEccccccccCCceEEEEeCCCC-CcceeeCCCCCEEEE--cCCCCCeEEEEEeehhhhhhhccccCcccceEe
Confidence            11 345555443    21 2222332222 346899999997654  567899999999985      111       11


Q ss_pred             eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC----------ceEEEEEeCCCcCceEEEEE------CCCCCE
Q 014007          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----------TLLQEVRRGADRAEIYSLAF------SSNAQW  317 (432)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~----------~~~~~~~~~~~~~~i~~~~~------s~~~~~  317 (432)
                      ...-.-.....+|.++|....+...|.. |..|++...          ..+.++..+   ..+-.+.-      .+||++
T Consensus       373 e~e~GlGPlHt~Fd~~G~aYTtlfidSq-vvkWni~~a~~~~~g~~~~~v~~k~dv~---YqpGH~~~~~get~~~dGk~  448 (638)
T 3sbq_A          373 EPELGLGPLHTTFDGRGNAYTTLFIDSQ-VVKWNMEEAVRAYKGEKVNYIKQKLDVH---YQPGHLHASLCETNEADGKW  448 (638)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETTTTE-EEEEEHHHHHHHHTTCCCCCEEEEEECS---SCEEEEEETTTTSTTCCSCE
T ss_pred             eccCCCcccEEEECCCCceEeeeeecce-EEEEeccHHHHHhcCccCCeeeeccccc---cCCcccccCCCccCCCCccE
Confidence            1122345678899999976777778998 999998653          456666643   23333433      578888


Q ss_pred             EEEEe---CCCe----------EEEEEecCCC
Q 014007          318 LAVSS---DKGT----------VHVFNLKVNS  336 (432)
Q Consensus       318 l~~~~---~dg~----------i~iwd~~~~~  336 (432)
                      |++..   .|+.          -.++|+...+
T Consensus       449 lv~lnK~skdrfl~vGpl~pen~QlidIsGdk  480 (638)
T 3sbq_A          449 LVALSKFSKDRFLPVGPLHPENDQLIDISGDE  480 (638)
T ss_dssp             EEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred             EEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence            88875   3443          3677775544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.98  E-value=0.16  Score=44.23  Aligned_cols=160  Identities=9%  Similarity=0.039  Sum_probs=90.7

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe----C-------------CeEEEEEcCCCeeeEEEeeccCCcc
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----E-------------QKIFVYNFADLKLLHQIETIANPKG  218 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d-------------~~i~i~d~~~~~~~~~~~~~~~~~~  218 (432)
                      +.|+..+..... ...+.. ..  +--+++++.++..    +             ..|+..++..++. ..+..  .  .
T Consensus        37 ~~ly~~~~dg~~-~~~l~~-~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l~~--~--~  107 (302)
T 3s25_A           37 GRLYAMNIDGSN-IHKLSN-DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVLDP--D--P  107 (302)
T ss_dssp             TEEEEEETTSCS-CEEEEE-EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEEEC--S--C
T ss_pred             ceEEEEcCCCCC-CEEccC-Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEeec--C--C
Confidence            667766643322 333321 11  2344677766662    2             3577777765542 22321  1  2


Q ss_pred             eEEEecCCCcEEEEe-ecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCCceEEE
Q 014007          219 LCAVSQGVGSLVLVC-PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQE  296 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~-~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~~~~~~  296 (432)
                      ...++++++.++++. ....+..|...+++......+..+..    ..++++++.|+-.+. ... |.+-++..+... .
T Consensus       108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~-Iy~~~l~g~~~~-~  181 (302)
T 3s25_A          108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQ-LYRYDTASQSEA-L  181 (302)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCC-EEEEETTTTEEE-E
T ss_pred             ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCce-EEEEECCCCCEE-E
Confidence            347888999887763 11245667777777766666655533    456788888876655 556 888887665544 3


Q ss_pred             EEeCCCcCceEEEEECCCCCEEEEEeCC--CeEEEEEecCC
Q 014007          297 VRRGADRAEIYSLAFSSNAQWLAVSSDK--GTVHVFNLKVN  335 (432)
Q Consensus       297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~  335 (432)
                      +..    .... ..++|++.+|+-....  ..|..-++...
T Consensus       182 l~~----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~  217 (302)
T 3s25_A          182 FYD----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP  217 (302)
T ss_dssp             EEC----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred             EeC----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence            332    1222 3456999988876643  34555555543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.93  E-value=0.18  Score=44.94  Aligned_cols=48  Identities=4%  Similarity=-0.071  Sum_probs=26.4

Q ss_pred             CcEEEEEccCCceeeeeccC--Cce-eEEEEcCCCCEEEEEcC------CCceEEEEEC
Q 014007          239 GQVRVEHYASKRTKFIMAHD--SRI-ACFALTQDGQLLATSST------KGTLVRIFNT  288 (432)
Q Consensus       239 ~~i~i~d~~~~~~~~~~~~~--~~i-~~~~~sp~~~~l~~~~~------dg~~i~vwd~  288 (432)
                      ..+.+||..+..-..+....  ..- .+++.. ++++++.|+.      ... +.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~-v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDA-VFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCC-EEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCc-eEEEEe
Confidence            57889998875544332211  111 233322 6667777764      234 777886

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.84  E-value=0.21  Score=43.40  Aligned_cols=227  Identities=10%  Similarity=0.056  Sum_probs=111.9

Q ss_pred             CEEEEEc---CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEE--e
Q 014007           98 GCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--L  172 (432)
Q Consensus        98 ~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~--~  172 (432)
                      .+++.|+   .+.+.+||..+.+-.....+. ..... ..+....+..++++|..  ......+.+||..+++-...  +
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPF-EKRRD-AACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCS-CCCBS-CEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCC-cccce-eEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCC
Confidence            3555665   234899998876654333333 11111 22222344455554432  11226799999887753322  2


Q ss_pred             ecCCceEEEEEecCccEEEe---C------CeEEEEEcCCCeeeEEEeeccCCc-ceEEEecCCCcEEEEeecCC-----
Q 014007          173 SFRSEVRSVKLRRDRIIVVL---E------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPGLQ-----  237 (432)
Q Consensus       173 ~~~~~v~~~~~~~~~~~~~~---d------~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~-----  237 (432)
                      .....-.+++.. ++.+++.   +      ..+.+||+.+.+-... .....+. ...+... ++.++++ +|..     
T Consensus        89 p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~-~~~iyv~-GG~~~~~~~  164 (306)
T 3ii7_A           89 PTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQRCSHGMVEA-NGLIYVC-GGSLGNNVS  164 (306)
T ss_dssp             SSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE-TTEEEEE-CCEESCTTT
T ss_pred             CccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCCcceeEEEEE-CCEEEEE-CCCCCCCCc
Confidence            221111222233 4444442   2      3588999887653322 1111111 1122222 3445544 3321     


Q ss_pred             ---CCcEEEEEccCCceeeeeccCCc--eeEEEEcCCCCEEEEEcCC-----CceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          238 ---KGQVRVEHYASKRTKFIMAHDSR--IACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       238 ---d~~i~i~d~~~~~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                         ...+.+||..+..-..+......  -.++... ++++++.|+.+     .. +.+||+.+.+-...-..........
T Consensus       165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~~  242 (306)
T 3ii7_A          165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDN-VEYYDIKLNEWKMVSPMPWKGVTVK  242 (306)
T ss_dssp             CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCC-EEEEETTTTEEEECCCCSCCBSCCE
T ss_pred             ccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCce-EEEeeCCCCcEEECCCCCCCcccee
Confidence               35588999888654444321111  1122222 67777777654     34 8999988765332211111111223


Q ss_pred             EEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007          308 SLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  336 (432)
                      .+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            3333  67788888744     468888887764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.73  E-value=0.26  Score=42.93  Aligned_cols=173  Identities=8%  Similarity=0.011  Sum_probs=83.9

Q ss_pred             CeEEEEeCCCCceeEE--eecCCceEEEEEecCccEEEeC------------CeEEEEEcCCCeeeEEEeeccCCcceEE
Q 014007          156 NKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE------------QKIFVYNFADLKLLHQIETIANPKGLCA  221 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~  221 (432)
                      ..+.+||..+++-...  +.....-.+++.. ++.+++..            +.+.+||+.+.+-...-..........+
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  117 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV  117 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence            5789999877653222  1111111223333 44444432            2488899877643221111111111122


Q ss_pred             EecCCCcEEEEeecCC----CCcEEEEEccCCceeeeeccC---CceeEEEEcCCCCEEEEEcCC-----CceEEEEECC
Q 014007          222 VSQGVGSLVLVCPGLQ----KGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTK-----GTLVRIFNTL  289 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~----d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~  289 (432)
                      ... ++.++++ +|..    ...+.+||..+..-..+....   ..-..+.+  ++++++.|+.+     .. +.+||+.
T Consensus       118 ~~~-~~~iyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~  192 (308)
T 1zgk_A          118 GVI-DGHIYAV-GGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNS-AECYYPE  192 (308)
T ss_dssp             EEE-TTEEEEE-CCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCC-EEEEETT
T ss_pred             EEE-CCEEEEE-cCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCce-EEEEeCC
Confidence            222 3445443 3321    246888898875443332111   11122222  67777777754     34 8899987


Q ss_pred             CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (432)
Q Consensus       290 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  336 (432)
                      +.+-...-...........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       193 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          193 RNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            7653322111111111222333  66777777654     468888887754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.48  E-value=0.39  Score=41.90  Aligned_cols=175  Identities=10%  Similarity=0.108  Sum_probs=84.6

Q ss_pred             CeEEEEeCCCCceeE-EeecC-CceEEEEEecCccEEEeCC--------------eEEEEEcCCCeeeEEEeeccCCcce
Q 014007          156 NKVMIWDDHQSRCIG-ELSFR-SEVRSVKLRRDRIIVVLEQ--------------KIFVYNFADLKLLHQIETIANPKGL  219 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~-~~~~~-~~v~~~~~~~~~~~~~~d~--------------~i~i~d~~~~~~~~~~~~~~~~~~~  219 (432)
                      ..+.+||..+++-.. .+... ..........++.+++..|              .+.+||..+.+-.. +.....+...
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~   91 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCL   91 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEES
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhc
Confidence            469999988876432 11111 1222222233444444222              27888988765322 2111111111


Q ss_pred             EEEecCCCcEEEEeecC-------CCCcEEEEEccCCceeeeeccCC--ceeEEEEcCCCCEEEEEcC-C-----CceEE
Q 014007          220 CAVSQGVGSLVLVCPGL-------QKGQVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSST-K-----GTLVR  284 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~-------~d~~i~i~d~~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~-d-----g~~i~  284 (432)
                      .+....++.++++ +|.       ....+.+||..+..-..+.....  .-.+++. -++++++.|+. +     .. +.
T Consensus        92 ~~~~~~~~~lyv~-GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~-~~  168 (315)
T 4asc_A           92 FGLGEALNSIYVV-GGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNK-MC  168 (315)
T ss_dssp             CEEEEETTEEEEE-CCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCC-EE
T ss_pred             eeEEEECCEEEEE-eCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccce-EE
Confidence            1222224455544 341       12568889988754433321111  1112222 36677777776 2     35 89


Q ss_pred             EEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC-----eEEEEEecCCC
Q 014007          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG-----TVHVFNLKVNS  336 (432)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~  336 (432)
                      +||..+.+-...-...........+.+  ++++++.|+.++     .+.+||+.+.+
T Consensus       169 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          169 VYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             EEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            999887643321111101111222222  677777777543     57888887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.43  E-value=0.47  Score=42.30  Aligned_cols=135  Identities=13%  Similarity=0.079  Sum_probs=75.8

Q ss_pred             eEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCcee---EEe----e-cCCceEEEEEecC----ccEEEe-----
Q 014007          131 GVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCI---GEL----S-FRSEVRSVKLRRD----RIIVVL-----  192 (432)
Q Consensus       131 ~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~~---~~~----~-~~~~v~~~~~~~~----~~~~~~-----  192 (432)
                      ....|+|.+++. ++++.. .     |.|++++. .++..   ..+    . .......|+++|+    +.+.++     
T Consensus        19 ~P~~i~~~pdG~~l~V~e~-~-----G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~   91 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLR-G-----GELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG   91 (353)
T ss_dssp             SEEEEEECSTTCCEEEEET-T-----TEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred             CcEEEEEcCCCCEEEEEeC-C-----ceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCC
Confidence            457889999998 776654 4     89999984 33321   111    1 2345789999995    443332     


Q ss_pred             -----CCeEEEEEcCCC--e--eeEE-Eeec------cCCcceEEEecCCCcEEEEeecCC------------CCcEEEE
Q 014007          193 -----EQKIFVYNFADL--K--LLHQ-IETI------ANPKGLCAVSQGVGSLVLVCPGLQ------------KGQVRVE  244 (432)
Q Consensus       193 -----d~~i~i~d~~~~--~--~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~g~~------------d~~i~i~  244 (432)
                           ...|..|++...  +  ..+. +...      .+....++|.|+| .++++. |..            .|.|.-+
T Consensus        92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~-Gd~~~~~~~q~~~~~~g~I~ri  169 (353)
T 2g8s_A           92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIAL-GENNQRPTAQDLDKLQGKLVRL  169 (353)
T ss_dssp             SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEE-CCTTCGGGGGCTTSCTTEEEEE
T ss_pred             CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEE-CCCCCCCccCCCCCCCeEEEEE
Confidence                 125666666432  1  1111 1111      1223569999998 566654 321            2567777


Q ss_pred             EccCC-------------ceeee-eccCCceeEEEEcC-CCCEEEE
Q 014007          245 HYASK-------------RTKFI-MAHDSRIACFALTQ-DGQLLAT  275 (432)
Q Consensus       245 d~~~~-------------~~~~~-~~~~~~i~~~~~sp-~~~~l~~  275 (432)
                      +.+..             ....+ .++ .....++|+| +|+++++
T Consensus       170 ~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          170 TDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             ETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence            76643             11122 123 3467899999 5655444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.033  Score=49.16  Aligned_cols=135  Identities=10%  Similarity=0.129  Sum_probs=75.0

Q ss_pred             CCeEEEEEcCCCeeeEEEeecc-CCcceEEEe----cCCCcEEEEeecCCCCcEEEEEccCCceeeeec-----cCCcee
Q 014007          193 EQKIFVYNFADLKLLHQIETIA-NPKGLCAVS----QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-----HDSRIA  262 (432)
Q Consensus       193 d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-----~~~~i~  262 (432)
                      ||.|+-+|..+|+.+..++... .+.  +...    +.+...+++. ...||.|..++..++..+.-..     ...++.
T Consensus        19 dG~l~Ald~~tG~~~W~~~~~~~~p~--~~~~~~~~~~~~~~~vv~-p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~   95 (339)
T 2be1_A           19 EGGLHAVDRRNGHIIWSIEPENFQPL--IEIQEPSRLETYETLIIE-PFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLH   95 (339)
T ss_dssp             TSCEEEEETTTTEEEEEECGGGSCCS--EECCCSCTTTSSEEEEEC-CSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEE
T ss_pred             CCeEEEEECCCCcEEEEecCCccCCc--EEecCCccccCCcEEEEE-ECCCCEEEEEECCCCcEEeeeccccceeccccc
Confidence            9999999999999988886541 111  1111    1122344332 2368999999987653321111     111221


Q ss_pred             E---EEE-c----CCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCce-----EEEEEC-----CCCCEEEEEeCC
Q 014007          263 C---FAL-T----QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI-----YSLAFS-----SNAQWLAVSSDK  324 (432)
Q Consensus       263 ~---~~~-s----p~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i-----~~~~~s-----~~~~~l~~~~~d  324 (432)
                      .   ... .    ..+..+++|+.++. +.-.|+++|+.+.++........+     .+....     ..+..|+.+..+
T Consensus        96 ~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~  174 (339)
T 2be1_A           96 LKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTI  174 (339)
T ss_dssp             EECC----------CCEEEEECEEEEE-EEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEE
T ss_pred             cCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecce
Confidence            1   000 0    13557889999999 999999999999988743211110     011110     123456667666


Q ss_pred             CeEEEEE
Q 014007          325 GTVHVFN  331 (432)
Q Consensus       325 g~i~iwd  331 (432)
                      ..+.+.+
T Consensus       175 y~v~~~~  181 (339)
T 2be1_A          175 FELGIHS  181 (339)
T ss_dssp             EECEECC
T ss_pred             EEEEEEC
Confidence            6666666

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.24  E-value=0.51  Score=40.79  Aligned_cols=174  Identities=16%  Similarity=0.125  Sum_probs=83.0

Q ss_pred             CeEEEEeCCCCceeEE--eecCCceEEEEEecCccEEEeC--------CeEEEEEcCCCeeeEEEeeccCCcceEEEecC
Q 014007          156 NKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE--------QKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  225 (432)
                      ..+..||+.+.+-...  +.....-.+++.. ++.+++..        ..+.+||..+.+-...-..........+... 
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-  107 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-  107 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence            5688999887653222  1111111223333 44444431        3588999887653222111111111122222 


Q ss_pred             CCcEEEEeecCCC----CcEEEEEccCCceeeeeccCC--ceeEEEEcCCCCEEEEEcCC-------CceEEEEECCCCc
Q 014007          226 VGSLVLVCPGLQK----GQVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSSTK-------GTLVRIFNTLDGT  292 (432)
Q Consensus       226 ~~~~~~~~~g~~d----~~i~i~d~~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~d-------g~~i~vwd~~~~~  292 (432)
                      ++.++++ +|...    ..+.+||..+..-..+.....  .-.+++. -++++++.|+.+       .. +.+||..+.+
T Consensus       108 ~~~iyv~-GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~-~~~yd~~~~~  184 (302)
T 2xn4_A          108 NGLLYAV-GGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLST-VECYNATTNE  184 (302)
T ss_dssp             TTEEEEE-EEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCC-EEEEETTTTE
T ss_pred             CCEEEEE-cCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccE-EEEEeCCCCc
Confidence            3445444 34221    357788887755443322111  1112222 266777777642       34 8899988765


Q ss_pred             eEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007          293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (432)
Q Consensus       293 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  336 (432)
                      -...-...........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       185 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          185 WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            4332111111111222222  66777777654     368888887654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.23  E-value=0.6  Score=41.49  Aligned_cols=140  Identities=14%  Similarity=0.051  Sum_probs=63.4

Q ss_pred             CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecC-----CCCcEEEEEc--cCCceeeeecc---CCceeE
Q 014007          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL-----QKGQVRVEHY--ASKRTKFIMAH---DSRIAC  263 (432)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~--~~~~~~~~~~~---~~~i~~  263 (432)
                      ..+.+||+.+.+-...-..........+....++.++++ +|.     ....+.+||+  .+..-..+...   ......
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~-GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLI-NGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEE-CCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEE-eeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            478999988765333211111111112222234455544 332     1345777877  33332222211   111111


Q ss_pred             EEEcCCCCEEEEEcCC----------------------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007          264 FALTQDGQLLATSSTK----------------------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (432)
Q Consensus       264 ~~~sp~~~~l~~~~~d----------------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  321 (432)
                      .+...++++++.|+.+                      .. +.+||+.+.+-...-........-..+.  .++++++.|
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~G  323 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYS-TDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIG  323 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEEC-CEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceee-EEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEe
Confidence            1222367777777742                      24 7899988765433222111111222222  477888888


Q ss_pred             eCCC------eEEEEEecCCCC
Q 014007          322 SDKG------TVHVFNLKVNSG  337 (432)
Q Consensus       322 ~~dg------~i~iwd~~~~~~  337 (432)
                      +.++      .|.++++++++.
T Consensus       324 G~~~~~~~~~~v~~l~~~~~~~  345 (357)
T 2uvk_A          324 GETAGGKAVTDSVLITVKDNKV  345 (357)
T ss_dssp             EECGGGCEEEEEEEEEC-CCSC
T ss_pred             eeCCCCCEeeeEEEEEEcCcEe
Confidence            7542      466678887763

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.17  E-value=0.58  Score=40.76  Aligned_cols=228  Identities=12%  Similarity=0.115  Sum_probs=106.9

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC-----CCCCCCCCeEEEEeCCCCceeEE--
Q 014007           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-----PDPQYPLNKVMIWDDHQSRCIGE--  171 (432)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-----~d~~~~~~~v~iwd~~~~~~~~~--  171 (432)
                      +++.|+ +.+.+||..+.+-.. ..+.......-.++....+..++++|.     .........+.+||..+++-...  
T Consensus         7 l~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344554 568899988776543 333211122223333344455555552     11000012388899887653221  


Q ss_pred             eecCCceEEEEEecCccEEEeC-----------CeEEEEEcCCCeeeEEEeeccCCc-ceEEEecCCCcEEEEeecC-C-
Q 014007          172 LSFRSEVRSVKLRRDRIIVVLE-----------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPGL-Q-  237 (432)
Q Consensus       172 ~~~~~~v~~~~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~-~-  237 (432)
                      +.....-.+++.. ++.+++..           ..+.+||+.+.+-.. +.....+. ...+... ++.+++. +|. . 
T Consensus        85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~~iyv~-GG~~~~  160 (315)
T 4asc_A           85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYVVYGHTVLSH-MDLVYVI-GGKGSD  160 (315)
T ss_dssp             BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE-TTEEEEE-CCBCTT
T ss_pred             CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCcccceeEEEE-CCEEEEE-eCCCCC
Confidence            1111111222333 44444322           358899988764322 11111111 1222223 3345443 342 1 


Q ss_pred             ---CCcEEEEEccCCceeeeeccCC---ceeEEEEcCCCCEEEEEcCCCc----eEEEEECCCCceEEEEEeCCCcCceE
Q 014007          238 ---KGQVRVEHYASKRTKFIMAHDS---RIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       238 ---d~~i~i~d~~~~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~~dg~----~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                         -..+.+||..+..-..+.....   .-.++.+  ++++++.|+.++.    .+.+||..+.+-...-..........
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  238 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS  238 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence               2468889988754433322111   1122222  6777888876542    28899988775433211111111122


Q ss_pred             EEEECCCCCEEEEEeCC--------------CeEEEEEecCCC
Q 014007          308 SLAFSSNAQWLAVSSDK--------------GTVHVFNLKVNS  336 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~  336 (432)
                      .+.+  ++++++.|+.+              ..+.+||+.+.+
T Consensus       239 ~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          239 LVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            2233  66777777653              246778877654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.87  E-value=0.099  Score=42.59  Aligned_cols=103  Identities=17%  Similarity=0.112  Sum_probs=62.4

Q ss_pred             CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCc--------eeEEEEcCCCCEEEEEcCCCceEEEE
Q 014007          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR--------IACFALTQDGQLLATSSTKGTLVRIF  286 (432)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~--------i~~~~~sp~~~~l~~~~~dg~~i~vw  286 (432)
                      ..+..++|+|++. ++.+    .+|.+.-.+..+.....+.+....        -.++.|.|+|.+.++  .||. |+-+
T Consensus        41 ~~~~~laf~P~G~-LYaV----~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~-iyr~  112 (236)
T 1tl2_A           41 SNFKFLFLSPGGE-LYGV----LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDK-LYKA  112 (236)
T ss_dssp             TTCSEEEECTTSC-EEEE----ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTE-EEEE
T ss_pred             ccceeEEECCCcc-EEEE----eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCE-EEEe
Confidence            3567899999776 4433    356666666544222222111222        378999999987777  5688 8877


Q ss_pred             ECCCCceE------EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEE
Q 014007          287 NTLDGTLL------QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH  328 (432)
Q Consensus       287 d~~~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  328 (432)
                      +-.+...-      .++-.. .=..+..|.|.|+|.+.++.  |+.++
T Consensus       113 ~pP~~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          113 SPPQSDTDNWIARATEVGSG-GWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             SCCCSTTCCHHHHSEEEECS-SGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCCcCCCCceeccccEeccC-CCCceEEEEECCCceEEEEe--CCcEE
Confidence            75332111      122211 11468999999999987776  77754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.73  E-value=0.047  Score=44.49  Aligned_cols=112  Identities=14%  Similarity=0.123  Sum_probs=65.2

Q ss_pred             CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce------EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEe
Q 014007          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL------LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (432)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  332 (432)
                      ..+..++|+|+|.+.++  .+|. ++-.+..+...      -..+-...- ..-..+.|.|+|.+.++  .||.|+-++-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~-Ly~~~~~t~~~~~W~~s~t~IG~~Gw-~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDK-IYKGTPPTHDNDNWMGRAKKIGNGGW-NQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTE-EEEESCCCSTTCCHHHHCEEEECSCG-GGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCe-EEEECCCCCCcccccccccEeccccc-ccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            36779999999986666  6777 77666544211      122221111 12478999999998877  5698876664


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEE
Q 014007          333 KVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYR  406 (432)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i  406 (432)
                      .+....                   .+...-.+.-...|         ..+..|.|.|+|.+-++.  ||.++-
T Consensus       115 P~~~~~-------------------~Wl~~a~~vg~~gw---------~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          115 PQSDTD-------------------NWIARATEVGSGGW---------SGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             CCSTTC-------------------CHHHHSEEEECSSG---------GGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             CcCCCC-------------------ceeccccEeccCCC---------CceEEEEECCCceEEEEe--CCcEEe
Confidence            332210                   00000000000011         347889999999987766  887554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.61  E-value=1.1  Score=39.59  Aligned_cols=231  Identities=10%  Similarity=0.022  Sum_probs=122.0

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecc---cCcceeEEEEeeeCC----eEEEec--CCC
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE---RGGGIGVVEMLFRCN----ILALVG--GGP  149 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~----~~~~~s--~~~  149 (432)
                      +....-.....|+|.|||++|++-. .+.|++++.+.++......+.   .........++++|+    +.+.++  ...
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            3334455778999999999888877 445888875544432222221   134567889999884    444332  223


Q ss_pred             CCCCCCCeEEEEeCCCC----------cee-EEee--cCCceEEEEEecCccEEEe--C--------------CeEEEEE
Q 014007          150 DPQYPLNKVMIWDDHQS----------RCI-GELS--FRSEVRSVKLRRDRIIVVL--E--------------QKIFVYN  200 (432)
Q Consensus       150 d~~~~~~~v~iwd~~~~----------~~~-~~~~--~~~~v~~~~~~~~~~~~~~--d--------------~~i~i~d  200 (432)
                      +     +.|.-|.+..+          +.+ ..+.  .......|.|.|||.+.++  |              |.|.-++
T Consensus       106 ~-----~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~  180 (347)
T 3das_A          106 D-----NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMT  180 (347)
T ss_dssp             S-----EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred             C-----CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence            3     67777766542          111 1122  1234567999999976664  1              4455555


Q ss_pred             cCCCee--------eEEE-eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-------------------ee
Q 014007          201 FADLKL--------LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-------------------TK  252 (432)
Q Consensus       201 ~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-------------------~~  252 (432)
                      .. ++.        ...+ .++.++ ..++|+|++. ++++-.| .++.-.|.-+..+.                   +.
T Consensus       181 ~d-G~ip~~nPf~~~~i~a~G~RNp-~Gla~dp~G~-L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~  256 (347)
T 3das_A          181 PD-GEPAPGNPFPGSPVYSYGHRNV-QGLAWDDKQR-LFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVA  256 (347)
T ss_dssp             TT-SSBCTTCSSTTCCEEEBCCSBC-CEEEECTTCC-EEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSE
T ss_pred             CC-CCccCCCCCCCCeEEeeCCCCc-ceEEECCCCC-EEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcE
Confidence            43 220        1111 233333 3688888754 4443322 33322232222211                   11


Q ss_pred             eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceE---EEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007          253 FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL---QEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (432)
Q Consensus       253 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~  322 (432)
                      .+..+......++|. +|..++..-..+. |....+.....+   ..+-.. ....+..++..|||.++++..
T Consensus       257 ~~~~~~~ap~G~~~~-~g~~~~~~l~~~~-l~~v~~~~~~~~~~~e~~l~~-~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          257 QWSTDEASPSGIAYA-EGSVWMAGLRGER-LWRIPLKGTAAAADPQAFLEG-EYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EECTTTCCEEEEEEE-TTEEEEEESTTCS-EEEEEEETTEESSCCEEESTT-TSSCEEEEEEEETTEEEEEEC
T ss_pred             ecCCCCCCCcceEEE-cCceeeccccCCE-EEEEEecCCceecceEEeecC-CCCCccEEEECCCCcEEEEEc
Confidence            111122345667775 4655555555555 666666544321   122211 235789999999998766654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.097  Score=46.16  Aligned_cols=106  Identities=13%  Similarity=0.127  Sum_probs=58.8

Q ss_pred             EEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEee---eCCeEEEecC-CCCCCCCCCeEEEEeCCCCceeEEeec
Q 014007          100 FAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF---RCNILALVGG-GPDPQYPLNKVMIWDDHQSRCIGELSF  174 (432)
Q Consensus       100 l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~s~-~~d~~~~~~~v~iwd~~~~~~~~~~~~  174 (432)
                      +++++ |+.|.-+|.++++........  ..........   ..++..++.. ..|     |.|+.++..+|.....+..
T Consensus        13 V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~d-----G~l~a~~~~~G~~~~~~~~   85 (339)
T 2be1_A           13 LIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGD-----GNIYYFNAHQGLQKLPLSI   85 (339)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTT-----TEEEEEETTTEEEEEEEEH
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCC-----CEEEEEECCCCcEEeeecc
Confidence            34444 555777777777666543331  1112222110   1133344333 456     9999999988866555541


Q ss_pred             -----CCceEE---EEE------ecCccEEE--eCCeEEEEEcCCCeeeEEEee
Q 014007          175 -----RSEVRS---VKL------RRDRIIVV--LEQKIFVYNFADLKLLHQIET  212 (432)
Q Consensus       175 -----~~~v~~---~~~------~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~  212 (432)
                           ..++..   ..+      +.++.+++  .++.+...|+.+|+.+..+..
T Consensus        86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence                 222221   001      14555555  388999999999999988754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.59  E-value=1.1  Score=39.54  Aligned_cols=194  Identities=13%  Similarity=0.108  Sum_probs=105.0

Q ss_pred             eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce--eEEee-----cCCceEEEEEecC----ccEEEe-----C
Q 014007          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC--IGELS-----FRSEVRSVKLRRD----RIIVVL-----E  193 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~--~~~~~-----~~~~v~~~~~~~~----~~~~~~-----d  193 (432)
                      ..-+.|+|.+++.++++--..     |.|++++...++.  +..+.     .......|+++|+    +.+.++     +
T Consensus        32 ~~P~~ia~~pdG~llVter~~-----G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDE-----ATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             CCceEEEEcCCCcEEEEEecC-----CEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            455789999999888887645     8999998665543  22221     3456889999985    433331     4


Q ss_pred             CeEEEEEcCCC----------eee-EEEee-ccCCcceEEEecCCCcEEEEeecC------------CCCcEEEEEccCC
Q 014007          194 QKIFVYNFADL----------KLL-HQIET-IANPKGLCAVSQGVGSLVLVCPGL------------QKGQVRVEHYASK  249 (432)
Q Consensus       194 ~~i~i~d~~~~----------~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~------------~d~~i~i~d~~~~  249 (432)
                      +.|.-|.+..+          +.+ ..+.. ..+....+.|.|+| .+++.. |.            ..|.|.-++.+..
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~-Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGT-GESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEEC-BCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEE-CCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            56766765541          111 11211 12234569999998 466654 31            2356655565543


Q ss_pred             --------ceeee-eccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCc------------------eEEEEEeCC
Q 014007          250 --------RTKFI-MAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGT------------------LLQEVRRGA  301 (432)
Q Consensus       250 --------~~~~~-~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~------------------~~~~~~~~~  301 (432)
                              ....+ .+|. ....++|+|+|.+.++-. .++. =.|--+..+.                  .+..+..  
T Consensus       185 ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~-deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~--  260 (347)
T 3das_A          185 PAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTW-DELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST--  260 (347)
T ss_dssp             BCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSC-EEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT--
T ss_pred             ccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCC-ceeeEEcCCCEecCCcccCCCCCccccCCcEecCC--
Confidence                    11122 2343 356899999887665532 2222 2222222221                  1222221  


Q ss_pred             CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       302 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      +......|+|. +|..+...-..+.|....+...
T Consensus       261 ~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~  293 (347)
T 3das_A          261 DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGT  293 (347)
T ss_dssp             TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred             CCCCCcceEEE-cCceeeccccCCEEEEEEecCC
Confidence            11345677775 4555555555566666666543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.37  E-value=1.2  Score=38.54  Aligned_cols=157  Identities=8%  Similarity=-0.008  Sum_probs=89.2

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eC----C--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LE----Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d----~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      ..|+..++..++... +. ...  +..+++++..++ .+    +  .|+..++. +.....+..+.  +  ..++++++.
T Consensus        88 ~~Iy~i~~dg~~~~~-l~-~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~--~--~~~~~~g~~  158 (302)
T 3s25_A           88 NSLCRIKRNGHGSTV-LD-PDP--CIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHY--L--FTCNTSDRY  158 (302)
T ss_dssp             EEEEEEETTSCCCEE-EE-CSC--EEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSC--C--CCSEEETTE
T ss_pred             CeEEEEeCCCCcceE-ee-cCC--ccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCC--c--eEeeEECCE
Confidence            578888877665322 22 122  225667776666 23    3  56666765 33344443332  2  457889998


Q ss_pred             EEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC--CceEEEEECCCCceEEEEEeCCCcCce
Q 014007          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK--GTLVRIFNTLDGTLLQEVRRGADRAEI  306 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--g~~i~vwd~~~~~~~~~~~~~~~~~~i  306 (432)
                      ++...  .....|.+.++.++..+.+..  +... ..++|++.+|+-....  .. |..-++.... ...+..    ..+
T Consensus       159 iy~t~--~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~-I~~~~ldG~~-~~~Lt~----~~~  227 (302)
T 3s25_A          159 FYYNN--PKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNA-IVHVNINNPN-PVVLTE----ANI  227 (302)
T ss_dssp             EEEEC--TTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTE-EEEECSSSCC-CEECSC----SCE
T ss_pred             EEEEe--CCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcE-EEEEECCCCC-eEEEeC----CCc
Confidence            87654  246788888888766555532  2222 3466988888765543  24 6666665444 333331    233


Q ss_pred             EEEEECCCCCEEEEEeC--CCeEEEEEecC
Q 014007          307 YSLAFSSNAQWLAVSSD--KGTVHVFNLKV  334 (432)
Q Consensus       307 ~~~~~s~~~~~l~~~~~--dg~i~iwd~~~  334 (432)
                        ..|+|++++|.-+..  .+.|..-++..
T Consensus       228 --~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          228 --EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             --EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             --ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence              347788888876643  34555555543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.27  E-value=1.2  Score=41.07  Aligned_cols=62  Identities=15%  Similarity=0.265  Sum_probs=39.6

Q ss_pred             CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC------CCcCceEEEEECCC---CCEEEEE
Q 014007          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG------ADRAEIYSLAFSSN---AQWLAVS  321 (432)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~------~~~~~i~~~~~s~~---~~~l~~~  321 (432)
                      .....|+|.|+|+++++-...+. |++++..+++........      ........|+|+|+   +.+|..+
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~-I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGK-ILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCE-EEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEcCCCE-EEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            45679999999997776555457 888876556543222211      02356789999995   4444444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.18  E-value=1.4  Score=38.25  Aligned_cols=175  Identities=12%  Similarity=0.145  Sum_probs=82.4

Q ss_pred             CeEEEEeCCCCceeE-Eeec-CCceEEEEEecCccEEEeCC--------------eEEEEEcCCCeeeEEEeeccCCcce
Q 014007          156 NKVMIWDDHQSRCIG-ELSF-RSEVRSVKLRRDRIIVVLEQ--------------KIFVYNFADLKLLHQIETIANPKGL  219 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~-~~~~-~~~v~~~~~~~~~~~~~~d~--------------~i~i~d~~~~~~~~~~~~~~~~~~~  219 (432)
                      ..+..||..+++-.. .+.. ...........++.+++..|              .+.+||..+.+-.. +.....+...
T Consensus        24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~  102 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LPPLPSARCL  102 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CSCBSSCBCS
T ss_pred             cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CCCCCccccc
Confidence            358899988776433 1111 11112222233444444322              17788887754322 1111111111


Q ss_pred             EEEecCCCcEEEEeecCC--C----CcEEEEEccCCceeeeeccCCc--eeEEEEcCCCCEEEEEcC------CCceEEE
Q 014007          220 CAVSQGVGSLVLVCPGLQ--K----GQVRVEHYASKRTKFIMAHDSR--IACFALTQDGQLLATSST------KGTLVRI  285 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~g~~--d----~~i~i~d~~~~~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~------dg~~i~v  285 (432)
                      .+....++.++++ +|..  .    ..+.+||..+..-..+.....+  -.+++. .++++++.|+.      -.. +.+
T Consensus       103 ~~~~~~~~~iyv~-GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~-~~~  179 (318)
T 2woz_A          103 FGLGEVDDKIYVV-AGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNR-VFI  179 (318)
T ss_dssp             CEEEEETTEEEEE-EEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCC-EEE
T ss_pred             cceEEECCEEEEE-cCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccce-EEE
Confidence            1122223455544 3422  1    3577888877544433221111  112222 36777777764      235 899


Q ss_pred             EECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (432)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  336 (432)
                      ||..+.+-...-...........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       180 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          180 YNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            99887754322111111111222222  66777777643     357788887765

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.37  E-value=4.3  Score=39.88  Aligned_cols=196  Identities=13%  Similarity=0.080  Sum_probs=97.1

Q ss_pred             CCCCEEEEEcC-----CcEEEEEcCCCeeEEEe-e-----cccCcceeEEEEeee--CCeEEEecCCCCCCCCCCeEEEE
Q 014007           95 QDHGCFAAGTD-----HGFRIYNCDPFREIFRR-D-----FERGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        95 ~~~~~l~~~~~-----~~i~iw~~~~~~~~~~~-~-----~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~~~~~~v~iw  161 (432)
                      -++.+++.|+.     +.+.+||..+.+-.... .     +.  ....-.++...  .+..++++|.....-....+.+|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p--~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVP--VARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCC--CCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCC--ccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence            45677777762     23888998766544333 2     11  11112233333  44444444432211112568999


Q ss_pred             eCCCCceeE--EeecCCceEEEEEecCccEEEeCC-----eEEEEEcCCCeeeEEEe---e--ccCCcceEEEecCCCcE
Q 014007          162 DDHQSRCIG--ELSFRSEVRSVKLRRDRIIVVLEQ-----KIFVYNFADLKLLHQIE---T--IANPKGLCAVSQGVGSL  229 (432)
Q Consensus       162 d~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~  229 (432)
                      |..+.+-..  .+.....-.+++...++.+++..|     .+.+||+.+.+-...-.   .  .......+.+..+.+.+
T Consensus       474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            988764322  222222222333323565555433     69999998765322111   0  11111224444443455


Q ss_pred             EEEeecCC------CCcEEEEEccCCc------eeeeec---cCCceeEEEEcCCCCEEEEEcCC--------CceEEEE
Q 014007          230 VLVCPGLQ------KGQVRVEHYASKR------TKFIMA---HDSRIACFALTQDGQLLATSSTK--------GTLVRIF  286 (432)
Q Consensus       230 ~~~~~g~~------d~~i~i~d~~~~~------~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d--------g~~i~vw  286 (432)
                      ++. +|..      ...+.+||+.+..      -..+..   ....-.++....++++++.|+.+        .. |.+|
T Consensus       554 yv~-GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-v~~y  631 (695)
T 2zwa_A          554 IIL-GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS-IISL  631 (695)
T ss_dssp             EEE-CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS-EEEE
T ss_pred             EEE-CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe-EEEE
Confidence            554 3421      2458889988866      222222   11111233333347788888743        45 8999


Q ss_pred             ECCCCceE
Q 014007          287 NTLDGTLL  294 (432)
Q Consensus       287 d~~~~~~~  294 (432)
                      |..+.+-.
T Consensus       632 d~~t~~W~  639 (695)
T 2zwa_A          632 DPLSETLT  639 (695)
T ss_dssp             ETTTTEEE
T ss_pred             ECCCCeEE
Confidence            99877544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.97  E-value=2.7  Score=36.15  Aligned_cols=190  Identities=12%  Similarity=0.059  Sum_probs=93.1

Q ss_pred             CCCEEEEEc-C----CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE
Q 014007           96 DHGCFAAGT-D----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (432)
Q Consensus        96 ~~~~l~~~~-~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~  170 (432)
                      ++.+++.|+ +    +.+.+||..+.+-.....+.  ....-..+....+..++++|..........+.+||..+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP--TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS--SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC--ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            566777766 2    33888998777654444443  1111122222344455554432112223579999988775332


Q ss_pred             E--eecCCceEEEEEecCccEEEe------------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecC
Q 014007          171 E--LSFRSEVRSVKLRRDRIIVVL------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (432)
Q Consensus       171 ~--~~~~~~v~~~~~~~~~~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  236 (432)
                      .  +.....-.++... ++.+++.            -..+.+||+.+.+-.. +.....+....+....++.++++ +|.
T Consensus       133 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~i~v~-GG~  209 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCPMIEARKNHGLVFVKDKIFAV-GGQ  209 (306)
T ss_dssp             ECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEE-CCE
T ss_pred             CCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCCccchhhcceEEEECCEEEEE-eCC
Confidence            2  2212122223333 4444442            2348899988764322 22111111111111123445544 342


Q ss_pred             C----CCcEEEEEccCCceeeeecc---CCceeEEEEcCCCCEEEEEcCC-----CceEEEEECCCCce
Q 014007          237 Q----KGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTL  293 (432)
Q Consensus       237 ~----d~~i~i~d~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~~~~~  293 (432)
                      .    -..+.+||..+..-..+...   .....++.+  ++++++.|+.+     .. +.+||..+.+-
T Consensus       210 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~W  275 (306)
T 3ii7_A          210 NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGH-ILEYNTETDKW  275 (306)
T ss_dssp             ETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCE-EEEEETTTTEE
T ss_pred             CCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeee-EEEEcCCCCeE
Confidence            1    24688899887554433211   112223333  67788888754     34 88999877643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.93  E-value=5.2  Score=39.26  Aligned_cols=178  Identities=8%  Similarity=0.049  Sum_probs=88.6

Q ss_pred             CeEEEEeCCCCceeEEe--------ecCCceEEEEEec-CccEEEeC---------CeEEEEEcCCCeeeEEEeeccCCc
Q 014007          156 NKVMIWDDHQSRCIGEL--------SFRSEVRSVKLRR-DRIIVVLE---------QKIFVYNFADLKLLHQIETIANPK  217 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~--------~~~~~v~~~~~~~-~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~  217 (432)
                      ..+.+||..+++-...-        .....-.+++... ++.+++..         +.+.+||+.+.+-...-.......
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~  491 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF  491 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence            57899998877533222        1111223344442 55544421         358899988754322111111111


Q ss_pred             ceEEEecCCCcEEEEeecCC-CCcEEEEEccCCceeeeec------cCCceeEEEEcCC-CCEEEEEcC--C-----Cce
Q 014007          218 GLCAVSQGVGSLVLVCPGLQ-KGQVRVEHYASKRTKFIMA------HDSRIACFALTQD-GQLLATSST--K-----GTL  282 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~-d~~i~i~d~~~~~~~~~~~------~~~~i~~~~~sp~-~~~l~~~~~--d-----g~~  282 (432)
                      ...+..-.++.+++. +|.. ++.+.+||..+..-..+..      ....-.++.+..+ +++++.|+.  +     .. 
T Consensus       492 ~h~~~~~~~~~iyv~-GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~-  569 (695)
T 2zwa_A          492 RHSACSLPDGNVLIL-GGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK-  569 (695)
T ss_dssp             SCEEEECTTSCEEEE-CCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE-
T ss_pred             cceEEEEcCCEEEEE-CCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc-
Confidence            122222124445544 3422 2278999988855433321      1112233555554 677777776  2     34 


Q ss_pred             EEEEECCCCce-----EEEEEeC--CCcCceEEEEECCCCCEEEEEeC--------CCeEEEEEecCCC
Q 014007          283 VRIFNTLDGTL-----LQEVRRG--ADRAEIYSLAFSSNAQWLAVSSD--------KGTVHVFNLKVNS  336 (432)
Q Consensus       283 i~vwd~~~~~~-----~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~--------dg~i~iwd~~~~~  336 (432)
                      +.+||+.+.+.     ...+...  ....... ++...++++++.|+.        ...|.+||+.+.+
T Consensus       570 v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          570 AIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            88999988771     2222211  0111122 223233777777773        3458888887765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.72  E-value=4.6  Score=37.95  Aligned_cols=187  Identities=10%  Similarity=0.047  Sum_probs=108.0

Q ss_pred             CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEe--cCccEEEe----------CCeE---------
Q 014007          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLR--RDRIIVVL----------EQKI---------  196 (432)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~--~~~~~~~~----------d~~i---------  196 (432)
                      +|+++...+..    ...|...++...++.+.++  ....+.++++-  |+..+++.          ||..         
T Consensus       141 DGrylfiNdka----n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y  216 (638)
T 3sbq_A          141 DGKYLFINDKA----NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSY  216 (638)
T ss_dssp             EEEEEEEEETT----TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEE
T ss_pred             eeEEEEEecCC----CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhc
Confidence            56666655432    2788888998888776666  67788888886  56555552          3321         


Q ss_pred             ---EEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC------------C----------------------
Q 014007          197 ---FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK------------G----------------------  239 (432)
Q Consensus       197 ---~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d------------~----------------------  239 (432)
                         ...|..+.+...++.. ......+...+++.+.+..|-.++.            .                      
T Consensus       217 ~~f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~  295 (638)
T 3sbq_A          217 TMYNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITL  295 (638)
T ss_dssp             EEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCC
T ss_pred             eEEEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEE
Confidence               1122223333222222 1122234555666554433321111            1                      


Q ss_pred             ---cEEEEEccC----C-ceeeeeccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCC------Cce-------EEEE
Q 014007          240 ---QVRVEHYAS----K-RTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLD------GTL-------LQEV  297 (432)
Q Consensus       240 ---~i~i~d~~~----~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~------~~~-------~~~~  297 (432)
                         .|.+.|.+.    + ....+..-......+.++|||+++++++. +.+ +.++|++.      .+.       ....
T Consensus       296 ~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLspt-vtV~d~~k~~~~~~~k~~~~~~~~~ae~  374 (638)
T 3sbq_A          296 GDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPT-CSMIAIDKLPDLFAGKLADPRDVIVGEP  374 (638)
T ss_dssp             TTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSB-EEEEEGGGHHHHHTTCCSCGGGGEEECC
T ss_pred             CCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCe-EEEEEeehhhhhhhccccCcccceEeec
Confidence               244444433    1 11122233345678899999999888765 556 99999873      121       2233


Q ss_pred             EeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       298 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  335 (432)
                      .   -.......+|.++|....+---|..|.-|++...
T Consensus       375 e---~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          375 E---LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             B---CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             c---CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            3   2246788999999955555568999999999764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.67  E-value=3.2  Score=35.97  Aligned_cols=229  Identities=12%  Similarity=0.091  Sum_probs=104.2

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCC---CCC--CCCCeEEEEeCCCCceeEE--
Q 014007           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQ--YPLNKVMIWDDHQSRCIGE--  171 (432)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~--~~~~~v~iwd~~~~~~~~~--  171 (432)
                      +++.|+ ..+.+||..+.+-.. ..+.......-.++....+..++++|..   +..  .....+.+||..+.+-...  
T Consensus        18 i~~~GG-~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVND-TAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECS-SEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhccc-cceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            344444 347889987766543 2221011222233444445556665521   100  0012388899877643222  


Q ss_pred             eecCCceEEEEEecCccEEEe--C-------CeEEEEEcCCCeeeEEEeeccCCcc-eEEEecCCCcEEEEeecCC----
Q 014007          172 LSFRSEVRSVKLRRDRIIVVL--E-------QKIFVYNFADLKLLHQIETIANPKG-LCAVSQGVGSLVLVCPGLQ----  237 (432)
Q Consensus       172 ~~~~~~v~~~~~~~~~~~~~~--d-------~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~----  237 (432)
                      +.....-.+++...+..+++.  +       ..+.+||+.+.+-... .....+.. ..+... ++.+++. +|..    
T Consensus        96 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~-~~~iyv~-GG~~~~~~  172 (318)
T 2woz_A           96 LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVISH-NGMIYCL-GGKTDDKK  172 (318)
T ss_dssp             BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEEE-TTEEEEE-CCEESSSC
T ss_pred             CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEEE-CCEEEEE-cCCCCCCC
Confidence            222112223333333333331  1       2588889877643322 11111111 122223 3445443 3421    


Q ss_pred             -CCcEEEEEccCCceeeeeccCC--ceeEEEEcCCCCEEEEEcCCC-----ceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007          238 -KGQVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (432)
Q Consensus       238 -d~~i~i~d~~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg-----~~i~vwd~~~~~~~~~~~~~~~~~~i~~~  309 (432)
                       ...+.+||..+..-..+.....  .-.+++. -++++++.|+.++     . +.+||+.+.+-...-...........+
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~~~~  250 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSAS-VEAFDLKTNKWEVMTEFPQERSSISLV  250 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEE-EEEEETTTCCEEECCCCSSCCBSCEEE
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccce-EEEEECCCCeEEECCCCCCcccceEEE
Confidence             3468899988765443322111  1112222 2677777776543     3 778998876543221111011111222


Q ss_pred             EECCCCCEEEEEeCC--------------CeEEEEEecCCC
Q 014007          310 AFSSNAQWLAVSSDK--------------GTVHVFNLKVNS  336 (432)
Q Consensus       310 ~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~  336 (432)
                      .  -++++++.|+.+              ..+.+||+.+.+
T Consensus       251 ~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          251 S--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             E--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             E--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            2  256777776643              346777776654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.81  E-value=5.9  Score=36.53  Aligned_cols=108  Identities=12%  Similarity=0.052  Sum_probs=61.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeeccc-----CcceeEEEEeeeC----CeEEEecCCC-----
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFER-----GGGIGVVEMLFRC----NILALVGGGP-----  149 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~----~~~~~~s~~~-----  149 (432)
                      -.....|+|.|+|+++++-..++ |++++...+.......+..     ........++++|    ++.+.++...     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            44667999999999888877665 7777654444332233321     1346678999998    4554444321     


Q ss_pred             -CCC-CCCCeEEEEeCCCC-------ceeE-Eee--cCCceEEEEEecCccEEEe
Q 014007          150 -DPQ-YPLNKVMIWDDHQS-------RCIG-ELS--FRSEVRSVKLRRDRIIVVL  192 (432)
Q Consensus       150 -d~~-~~~~~v~iwd~~~~-------~~~~-~~~--~~~~v~~~~~~~~~~~~~~  192 (432)
                       +.. -....|..|+...+       +.+. .+.  .......|+|.|||.+.++
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~  160 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT  160 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence             000 00035666665322       1111 122  1245788999999987663

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.23  E-value=14  Score=34.19  Aligned_cols=104  Identities=14%  Similarity=0.105  Sum_probs=59.8

Q ss_pred             cceEEEecCCC-cEEEEeecCCCCcEEEEEccCCc----eeeee---------ccCCceeEEEEcCC----CCEEEEEcC
Q 014007          217 KGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR----TKFIM---------AHDSRIACFALTQD----GQLLATSST  278 (432)
Q Consensus       217 ~~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~~~~~----~~~~~---------~~~~~i~~~~~sp~----~~~l~~~~~  278 (432)
                      -..+++.|++. .++++-   ..|.|++++.+...    +..+.         ........|+|+|+    +.+.++-+.
T Consensus        16 P~~~a~~pdG~~rl~V~e---r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILE---KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             EEEEECCSSSSCCEEEEE---TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             ceEEEECCCCCeEEEEEe---CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            34788999986 455543   67899999754321    11111         11456889999996    444443222


Q ss_pred             --C----------CceEEEEECCC----------CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC
Q 014007          279 --K----------GTLVRIFNTLD----------GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK  324 (432)
Q Consensus       279 --d----------g~~i~vwd~~~----------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  324 (432)
                        +          .. |.-|.+..          .+.+..+...........|.|.|||.+.++.++.
T Consensus        93 ~~~~~~~~~~~~~~~-v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILR-VVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEE-EEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCCcccCCcccceE-EEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence              1          13 44465542          1233344322122346899999999877776643

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=88.77  E-value=13  Score=33.27  Aligned_cols=137  Identities=9%  Similarity=0.090  Sum_probs=76.5

Q ss_pred             eEEEEEcCCC--eeeEEEeeccC------CcceEEEe---cC---CCcEEEEeecCCCCcEEEEEccCCceeeeec----
Q 014007          195 KIFVYNFADL--KLLHQIETIAN------PKGLCAVS---QG---VGSLVLVCPGLQKGQVRVEHYASKRTKFIMA----  256 (432)
Q Consensus       195 ~i~i~d~~~~--~~~~~~~~~~~------~~~~~~~~---~~---~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----  256 (432)
                      +|.+||+.+.  +.++.+.....      ....+.+.   +.   ++..+.++ ....+.|.|+|+.++....+..    
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYIt-D~~~~gLIVydl~~~~swRv~~~~~~  202 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYIT-NFLRGALFIYDHKKQDSWNVTHPTFK  202 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEE-ETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEE-cCCCCcEEEEECCCCcEEEEccCCCc
Confidence            4556666666  66655543211      22344554   11   12232332 2345677788877654333221    


Q ss_pred             ---------------cCCceeEEEEcCC----CCEEEEEcCCCceEEEEECCC-----C---ceEEEEEeCCCcCceEEE
Q 014007          257 ---------------HDSRIACFALTQD----GQLLATSSTKGTLVRIFNTLD-----G---TLLQEVRRGADRAEIYSL  309 (432)
Q Consensus       257 ---------------~~~~i~~~~~sp~----~~~l~~~~~dg~~i~vwd~~~-----~---~~~~~~~~~~~~~~i~~~  309 (432)
                                     -...|..|+++|+    ++.|.-....+.  ++|.+.+     .   ..++.+-.......-..+
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~  280 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL  280 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence                           0246888999998    788887777764  5665432     1   222222211111234456


Q ss_pred             EEC-CCCCEEEEEeCCCeEEEEEecC
Q 014007          310 AFS-SNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       310 ~~s-~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      ++. .+|.++++--..+.|..|+..+
T Consensus       281 ~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          281 AYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             EEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            775 6787777777889999999875

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.40  E-value=16  Score=32.75  Aligned_cols=59  Identities=7%  Similarity=0.068  Sum_probs=30.7

Q ss_pred             ceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---CceEEEEECCC-CCEEEEE
Q 014007          260 RIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSN-AQWLAVS  321 (432)
Q Consensus       260 ~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~-~~~l~~~  321 (432)
                      .+.+|.++|+ ...|.++... . |...+ ..++.-..+......   ..+..+.++|. ...|..+
T Consensus       233 ~~~~i~~~~~~~~~l~vg~~~-g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~  296 (394)
T 3b7f_A          233 DPHCVVQHPAAPDILYQQNHC-G-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF  296 (394)
T ss_dssp             CEEEEEECSSSTTEEEEEETT-E-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred             ceeEEEECCCCCCEEEEEcCC-e-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence            4889999985 3566666544 4 55554 234433332211111   23567888763 3334443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.21  E-value=10  Score=38.74  Aligned_cols=37  Identities=24%  Similarity=0.217  Sum_probs=31.4

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCC
Q 014007          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (432)
Q Consensus       304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  340 (432)
                      ..+.+++..++..++++-+.|+++|||++.+++++..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t  272 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  272 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence            3577788888889999999999999999999886544

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=86.89  E-value=13  Score=35.55  Aligned_cols=59  Identities=14%  Similarity=0.175  Sum_probs=42.1

Q ss_pred             eeEEEEcCCCCEEEEEcCC------------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007          261 IACFALTQDGQLLATSSTK------------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (432)
Q Consensus       261 i~~~~~sp~~~~l~~~~~d------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  321 (432)
                      .-.|+|+|.|++++.-..+            .. +.+.+..+++..+.+... ....++.++|+||++.|.+.
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~-~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQ-MLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCE-EEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccce-EEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence            4679999999866654322            23 556666677776656543 56789999999999887665

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=85.94  E-value=15  Score=31.17  Aligned_cols=222  Identities=13%  Similarity=0.014  Sum_probs=111.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~  166 (432)
                      .|..|+.... ..++.. ++.|..|-.+.....-.. .  .....|..++......+++.   |     |.|+.|-....
T Consensus        25 ~i~~ia~G~~-h~~~l~-~G~v~~wG~n~~Gqlg~p-~--~~~~~i~~ia~G~~hs~~l~---~-----G~v~~wG~n~~   91 (282)
T 3qhy_B           25 GVDAIAGGYF-HGLALK-GGKVLGWGANLNGQLTMP-A--ATQSGVDAIAAGNYHSLALK---D-----GEVIAWGGNED   91 (282)
T ss_dssp             SCCEEEECSS-EEEEEE-TTEEEEEECCSSSTTSCC-G--GGGSCCCEEEECSSEEEEEE---T-----TEEEEEECCTT
T ss_pred             CCcEEEeCCC-eEEEEE-CCEEEEEeCCCCCCCCCC-c--cCCCCEEEEEeCCCEEEEEE---C-----CEEEEeeCCCC
Confidence            4555554433 223333 555777765432221101 1  12335667776666666663   5     89999975542


Q ss_pred             ceeEEe-ecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEE
Q 014007          167 RCIGEL-SFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (432)
Q Consensus       167 ~~~~~~-~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d  245 (432)
                      ..+..- .....|..++...+..+++.+|.|+.|-......+-.-......  ...++.-..+.+ +.   .||.|..|-
T Consensus        92 Gqlg~P~~~~~~v~~ia~G~~hs~al~~G~v~~wG~n~~gqlg~~~~~~~~--i~~i~~G~~~~~-~l---~~G~v~~wG  165 (282)
T 3qhy_B           92 GQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSG--VTALDGGVYTAL-AV---KNGGVIAWG  165 (282)
T ss_dssp             STTCCCGGGSSSEEEEEEETTEEEEEETTEEEEEECCTTSTTSCCGGGGSS--EEEEEECSSEEE-EE---ETTEEEEEE
T ss_pred             CCCCCCcccCCCeEEEECcCCEEEEEeCCeEEEecCCCCCcCCCCccCCCC--eEEEEcccCEEE-EE---ECCEEEEec
Confidence            211111 13457888887777655555999999976542211110011112  233333333333 32   268888886


Q ss_pred             ccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC
Q 014007          246 YAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK  324 (432)
Q Consensus       246 ~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  324 (432)
                      ... +.+..-......|..|+.-.+ ..++.  .||. |+.|=......+. +... ....|..++-.... .++..  |
T Consensus       166 ~n~~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~-v~~wG~n~~gqlg-~p~~-~~~~v~~i~~G~~h-~~al~--~  236 (282)
T 3qhy_B          166 DNYFGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGK-VIAWGDNRYKQTT-VPTE-ALSGVSAIASGEWY-SLALK--N  236 (282)
T ss_dssp             CCTTSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTE-EEEEECCTTSTTC-CCGG-GGSSCCEEEECSSC-EEEEE--T
T ss_pred             CCCCCCCCCceecCCCeEEEEecCC-EEEEE--ECCe-EEEEECCCCCCCC-CCcc-cCCCceEEEcCCCE-EEEEE--C
Confidence            554 222111112345777765433 23333  5888 9999654321111 1100 12356777665433 33333  9


Q ss_pred             CeEEEEEecCCC
Q 014007          325 GTVHVFNLKVNS  336 (432)
Q Consensus       325 g~i~iwd~~~~~  336 (432)
                      |.|+.|-.....
T Consensus       237 g~v~~wG~n~~g  248 (282)
T 3qhy_B          237 GKVIAWGSSRTA  248 (282)
T ss_dssp             TEEEEESTTCCC
T ss_pred             CEEEEecCCCCc
Confidence            999999765543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=83.43  E-value=20  Score=30.43  Aligned_cols=184  Identities=12%  Similarity=0.005  Sum_probs=95.8

Q ss_pred             eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe-ecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeE
Q 014007          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLH  208 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  208 (432)
                      ..|..++......++++   |     |.|+.|-......+..- .....|..++......+++.||.|+.|-....-.+-
T Consensus        24 ~~i~~ia~G~~h~~~l~---~-----G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg   95 (282)
T 3qhy_B           24 SGVDAIAGGYFHGLALK---G-----GKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTT   95 (282)
T ss_dssp             SSCCEEEECSSEEEEEE---T-----TEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTC
T ss_pred             CCCcEEEeCCCeEEEEE---C-----CEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCC
Confidence            35666666666555554   4     89999975543222111 134467778777666665578999999865421111


Q ss_pred             EEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007          209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (432)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd  287 (432)
                      .-......+  ..++--..+.+ +.  . +|.|+.|-... +.+-.-......|..++.-.+-  .+.-. ||. |+.|-
T Consensus        96 ~P~~~~~~v--~~ia~G~~hs~-al--~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~-v~~wG  165 (282)
T 3qhy_B           96 VPAEARSGV--DAIAAGAWASY-AL--K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGG-VIAWG  165 (282)
T ss_dssp             CCGGGSSSE--EEEEEETTEEE-EE--E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTE-EEEEE
T ss_pred             CCcccCCCe--EEEECcCCEEE-EE--e-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCE-EEEec
Confidence            000011122  23333223332 22  3 68888886554 2221111223456666654332  22233 788 99997


Q ss_pred             CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      ......+. +... ....|..++...+. .++.  .||.|+.|-.....
T Consensus       166 ~n~~gqlg-~p~~-~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~g  209 (282)
T 3qhy_B          166 DNYFGQTT-VPAE-AQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYK  209 (282)
T ss_dssp             CCTTSTTS-CCGG-GGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTS
T ss_pred             CCCCCCCC-Ccee-cCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCC
Confidence            54321111 1110 12467777765432 3333  59999999776544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.06  E-value=31  Score=31.74  Aligned_cols=96  Identities=10%  Similarity=0.089  Sum_probs=54.1

Q ss_pred             eEEEEeeeCCeE--EEecCCCCCCCCCCeEEEEeCCCC---ceeEEee---c-------CCceEEEEEecC----c-cEE
Q 014007          131 GVVEMLFRCNIL--ALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS---F-------RSEVRSVKLRRD----R-IIV  190 (432)
Q Consensus       131 ~v~~~~~~~~~~--~~~s~~~d~~~~~~~v~iwd~~~~---~~~~~~~---~-------~~~v~~~~~~~~----~-~~~  190 (432)
                      .-+.|+|.|++.  ++++-. .     |.|++++....   ..+..+.   .       ......|+++|+    + .|+
T Consensus        15 ~P~~~a~~pdG~~rl~V~er-~-----G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv   88 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEK-E-----GYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYV   88 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEET-T-----TEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred             CceEEEECCCCCeEEEEEeC-C-----ceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEE
Confidence            457889999984  666543 4     89999974322   1222221   1       356789999997    3 333


Q ss_pred             E-e---C----------CeEEEEEcCC----------CeeeEEEee--ccCCcceEEEecCCCcEEEEe
Q 014007          191 V-L---E----------QKIFVYNFAD----------LKLLHQIET--IANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       191 ~-~---d----------~~i~i~d~~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      + +   +          ..|.-|.+..          .+.+..+..  ..+....+.|.||| .+++..
T Consensus        89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~  156 (463)
T 2wg3_C           89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIIL  156 (463)
T ss_dssp             EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEE
T ss_pred             EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEe
Confidence            3 2   1          1455566542          123333321  12334579999998 566654

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=81.43  E-value=29  Score=30.94  Aligned_cols=206  Identities=8%  Similarity=0.053  Sum_probs=117.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc---C----------C-c--EEEEEcCCC--eeEEEeeccc---CcceeEEEEeee---C
Q 014007           84 PPPTLLHISFNQDHGCFAAGT---D----------H-G--FRIYNCDPF--REIFRRDFER---GGGIGVVEMLFR---C  139 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~---~----------~-~--i~iw~~~~~--~~~~~~~~~~---~~~~~v~~~~~~---~  139 (432)
                      +--.|..+...+++++-+.-+   +          . .  |.+||+.+.  +.+....+..   .....+..+.+.   +
T Consensus        85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~  164 (381)
T 3q6k_A           85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP  164 (381)
T ss_dssp             SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred             ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence            455789999999888655432   1          1 1  889999998  7775555531   123456677666   1


Q ss_pred             -----CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc-cEEEeCCeEEEEEcCCCeeeEEEeec
Q 014007          140 -----NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVLEQKIFVYNFADLKLLHQIETI  213 (432)
Q Consensus       140 -----~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~  213 (432)
                           ++.+.++-...     ..|.++|+.+++.-+.+. ..      +.|+. ..+..+|.-..|              
T Consensus       165 ~~~c~~~~aYItD~~~-----~gLIVydl~~~~swRv~~-~~------~~pd~~~~~~i~G~~~~~--------------  218 (381)
T 3q6k_A          165 KGDCSETFVYITNFLR-----GALFIYDHKKQDSWNVTH-PT------FKAERPTKFDYGGKEYEF--------------  218 (381)
T ss_dssp             TTTSCSEEEEEEETTT-----TEEEEEETTTTEEEEEEC-GG------GSCCSCEEEEETTEEEEE--------------
T ss_pred             CCCCCccEEEEEcCCC-----CcEEEEECCCCcEEEEcc-CC------CccccCcceEECCEEeEe--------------
Confidence                 45556665555     899999999988766553 21      23431 112234432211              


Q ss_pred             cCCcceEEEecC----CCcEEEEeecCCCCcEEEEEccC---------CceeeeeccC---CceeEEEEc-CCCCEEEEE
Q 014007          214 ANPKGLCAVSQG----VGSLVLVCPGLQKGQVRVEHYAS---------KRTKFIMAHD---SRIACFALT-QDGQLLATS  276 (432)
Q Consensus       214 ~~~~~~~~~~~~----~~~~~~~~~g~~d~~i~i~d~~~---------~~~~~~~~~~---~~i~~~~~s-p~~~~l~~~  276 (432)
                      ...+..++++|+    ++.+++.. - ...  ++|.+.+         ..++.+ +..   ..-..+++. .+|.++++-
T Consensus       219 ~~Gi~gIaLsp~~~~~~~~LYf~p-l-ss~--~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~  293 (381)
T 3q6k_A          219 KAGIFGITLGDRDSEGNRPAYYLA-G-SAI--KVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAE  293 (381)
T ss_dssp             CCCEEEEEECCCCTTSCCEEEEEE-S-SCS--EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEE
T ss_pred             ccCceEEEecCCcCCCCeEEEEEE-C-CCC--cEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEe
Confidence            234567888887    66666653 1 122  3343332         112222 222   233456675 678777777


Q ss_pred             cCCCceEEEEECCC-C---ceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007          277 STKGTLVRIFNTLD-G---TLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (432)
Q Consensus       277 ~~dg~~i~vwd~~~-~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  321 (432)
                      -.... |..|+..+ .   +....+.....-..+..+.+..+|.+.+..
T Consensus       294 ~~~~a-I~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          294 ANTKQ-VSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             SSSSE-EEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             ccCCe-EEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            77777 99999765 1   223333322222457778777776655444

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=80.65  E-value=25  Score=29.72  Aligned_cols=75  Identities=19%  Similarity=0.251  Sum_probs=49.3

Q ss_pred             CCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCc------eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007          258 DSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT------LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (432)
Q Consensus       258 ~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  330 (432)
                      ...|..+.... +..+++..+.+|. |+-..+....      ....++   ....+..+........|+..+..|.++.+
T Consensus        67 ~e~i~~v~~~~~~~~~~v~~T~~G~-iKr~~l~~~~~~~~G~~~i~lk---egD~l~~~~~~~~~~~ill~T~~G~~~r~  142 (276)
T 3no0_A           67 EEKIVGAFIREKFGNRLLLATKKGY-VKKIPLAEFEYKAQGMPIIKLT---EGDEVVSIASSVDETHILLFTKKGRVARF  142 (276)
T ss_dssp             TCCEEEEEEGGGSCSEEEEEETTSE-EEEEEGGGTTTCSTTEECSCCC---TTCCEEEEEECCSSCEEEEEETTSEEEEE
T ss_pred             CCEEEEEECCcCCCCEEEEEeCCCE-EEEEEHHHhhhhcCCeEEEecC---CCCEEEEEEEeCCCCEEEEEECCCEEEEE
Confidence            45566654421 4678999999999 9988875532      111222   23456666666566688888999999988


Q ss_pred             EecCCC
Q 014007          331 NLKVNS  336 (432)
Q Consensus       331 d~~~~~  336 (432)
                      +...-.
T Consensus       143 ~~~eip  148 (276)
T 3no0_A          143 SVREVP  148 (276)
T ss_dssp             EGGGSC
T ss_pred             EhhhCC
Confidence            876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	432
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 5e-10
 Identities = 26/173 (15%), Positives = 58/173 (33%), Gaps = 5/173 (2%)

Query: 159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKG 218
           M+  +     I   S    VR   +        L +   V             +I+   G
Sbjct: 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207

Query: 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSS 277
                 G     L   G +   +++   ++      ++ HD+ +        G+ + + +
Sbjct: 208 SETKKSGKPGPFL-LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              T +R+++  +   ++ +   A    + SL F   A ++   S   TV V+
Sbjct: 267 DDKT-LRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 12/83 (14%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 251 TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310
           +   ++  +        + G  L + S   T +++++   G  L  +        +  + 
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCLMTLV--GHDNWVRGVL 254

Query: 311 FSSNAQWLAVSSDKGTVHVFNLK 333
           F S  +++   +D  T+ V++ K
Sbjct: 255 FHSGGKFILSCADDKTLRVWDYK 277

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320
           I+C A  +D   +A        V I+       +Q         ++  + ++ ++  +  
Sbjct: 10  ISCHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 321 SSDKGTVHVFN 331
                  +V+ 
Sbjct: 69  CGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 7/44 (15%), Positives = 17/44 (38%)

Query: 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP 349
           I   A++ +   +A+  +   VH++    N      E +  +  
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ 53

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 10/136 (7%), Positives = 32/136 (23%), Gaps = 3/136 (2%)

Query: 196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM 255
             +++  +           +            +              +       T    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315
                I   + ++ G+LL           +++ L       +        +  L  + + 
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLA--GHDNRVSCLGVTDDG 324

Query: 316 QWLAVSSDKGTVHVFN 331
             +A  S    + ++N
Sbjct: 325 MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI 213
             +WD  +  C    +   S++ ++    +         +    +++    + L      
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQL 272
               G+ +VS      +L+  G       V       R   +  HD+R++C  +T DG  
Sbjct: 268 NIICGITSVSFSKSGRLLLA-GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326

Query: 273 LATSSTKGTLVRIFN 287
           +AT S     ++I+N
Sbjct: 327 VATGSWDSF-LKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315
            H+S I       +G   AT S   T  R+F+      L           I S++FS + 
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 316 QWLAVSSDKGTVHVFNLK 333
           + L    D    +V++  
Sbjct: 283 RLLLAGYDDFNCNVWDAL 300

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 22/242 (9%), Positives = 60/242 (24%), Gaps = 9/242 (3%)

Query: 91  ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
                D      G +                +            +    +         D
Sbjct: 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162

Query: 151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
               +  +      +              S    +      L+  +  ++  + + L Q 
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQLQQH 221

Query: 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
           +  +    L     G      +  G++   V V H        +  H+S +        G
Sbjct: 222 DFTSQIFSLGYCPTGE----WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277

Query: 271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
           +   ++      +  + T  G  + + +  +    + S   S + +++   S      V+
Sbjct: 278 KWFVSTGKDNL-LNAWRTPYGASIFQSKESS---SVLSCDISVDDKYIVTGSGDKKATVY 333

Query: 331 NL 332
            +
Sbjct: 334 EV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 4/95 (4%)

Query: 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323
           F +T DGQ+         L+           +++        + ++  S+  + +     
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPGIPRHA---RQINTLNHGEVVCAVTISNPTRHVYTGGK 71

Query: 324 KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358
            G V V+++      +        +      S   
Sbjct: 72  -GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 11/105 (10%), Positives = 30/105 (28%), Gaps = 5/105 (4%)

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           +   P      +        R    + H   +    ++   + + T       V++++  
Sbjct: 23  MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC--VKVWDIS 80

Query: 290 DGTLLQEVRRGADRA---EIYSLAFSSNAQWLAVSSDKGTVHVFN 331
                  V +         I S     +   L V  +  T+ +++
Sbjct: 81  HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 31/193 (16%), Positives = 66/193 (34%), Gaps = 21/193 (10%)

Query: 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI 213
             V +WD     C+  L   +            +V   L+  I V++      +H +   
Sbjct: 157 FMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 216

Query: 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRV----EHYASKRTKFIMAHDSRIACFALTQD 269
            +      +        ++  G     V++         +  +    H S + C    ++
Sbjct: 217 QSLTSGMELKDN-----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271

Query: 270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRR---GADRAEIYSLAFSSNAQWLAVSSDKGT 326
              + TSS  GT V++++   G  ++ +     G     ++ +  S+     AV S  GT
Sbjct: 272 --FVITSSDDGT-VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328

Query: 327 ----VHVFNLKVN 335
               + V +  V+
Sbjct: 329 EETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
           K  K +  HD  +    L   G  + + S   T +++++ + G  L+ +        ++S
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNT-LKVWSAVTGKCLRTLV--GHTGGVWS 62

Query: 309 LAFSSNAQW 317
                N   
Sbjct: 63  SQMRDNIII 71

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 5e-06
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 253 FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312
             +AH   +     + DG  +A++S   T ++I+N     + + +     R E   L   
Sbjct: 233 KNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTI-PVGTRIEDQQLGII 290

Query: 313 SNAQWLAVSSDKGTVHVFNL 332
              Q L   S  G ++  N 
Sbjct: 291 WTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 4/72 (5%)

Query: 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA 319
                  T  G  +   +  GT V        T  +         +      S +  + A
Sbjct: 19  TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCA 74

Query: 320 VSSDKGTVHVFN 331
                G V +++
Sbjct: 75  SGDVHGNVRIWD 86

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.5 bits (106), Expect = 6e-06
 Identities = 23/250 (9%), Positives = 49/250 (19%), Gaps = 21/250 (8%)

Query: 86  PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV 145
                IS +                +       +       G     V        + L+
Sbjct: 91  MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 146 GGGPDPQ--YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD 203
               D         +   D    +    L  R+  R      D +           +   
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW-----PHQSPRH 205

Query: 204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIAC 263
              +               +  +    L    L+ G+   + +A                
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLS-VDLKTGKTHTQEFAD--------LTELYFT 256

Query: 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323
              +               +  ++     L++           Y +AF      L +   
Sbjct: 257 GLRSPKDPNQIYGVLNR--LAKYDLKQRKLIKAANLDHT---YYCVAFDKKGDKLYLGGT 311

Query: 324 KGTVHVFNLK 333
              + VFN  
Sbjct: 312 FNDLAVFNPD 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 9e-06
 Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 2/74 (2%)

Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-RAEIYSLAFSSN 314
           A    I+   +     LL  +S  G+ + ++         ++ +    +  +    F  N
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGS-LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 315 AQWLAVSSDKGTVH 328
                         
Sbjct: 68  TDLQIYVGTVQGEI 81

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358
           I  +    +   L ++S  G++ V+    +  +   +   +     P    +F
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYK--FDIQAKNVDLLQSLRYKHPLLCCNF 64

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 43/316 (13%), Positives = 97/316 (30%), Gaps = 37/316 (11%)

Query: 54  EPDSFSPSIPES-NPNYQMPLPSPAESTSSSPPPTLLH------ISFNQDHGCFAAGTDH 106
           +  S   ++ +  N  Y +  P+           +L H      + F+ D    A G + 
Sbjct: 24  DSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK 83

Query: 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-----VGGGPDPQYPL------ 155
             ++Y       + R   +         +    +  +      V   PD ++        
Sbjct: 84  TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 143

Query: 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIAN 215
              +   +++   +       ++ S+        +V           DL+      T++ 
Sbjct: 144 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 203

Query: 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--------AHDSRIACFALT 267
             G+  V+   G    +  G     VRV    +      +         H   +     T
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263

Query: 268 QDGQLLATSSTKGTLVRIFNTLDGTLLQ----------EVRRGADRAEIYSLAFSSNAQW 317
           +DGQ + + S   + V+++N  +               EV     +  + S+A + N ++
Sbjct: 264 RDGQSVVSGSLDRS-VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 322

Query: 318 LAVSSDKGTVHVFNLK 333
           +   S    V  ++ K
Sbjct: 323 ILSGSKDRGVLFWDKK 338

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292
                 G +R         KF   H +  A         +L + S       I+N   G 
Sbjct: 257 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ--FNIYNLRSGK 314

Query: 293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332
           L+       D  +I+S+ F       AV  D G   +  L
Sbjct: 315 LVHANILK-DADQIWSVNFKGKTLVAAVEKD-GQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 10/74 (13%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
           +RT       S I C     +   + T +     +R++++++   L ++        +++
Sbjct: 4   QRTTLRGHMTSVITCLQF--EDNYVITGADDKM-IRVYDSINKKFLLQLS--GHDGGVWA 58

Query: 309 LAFSSNAQWLAVSS 322
           L ++     ++ S+
Sbjct: 59  LKYAHGGILVSGST 72

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 10/94 (10%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299
            + V+    +    + +     +     +       +  KG  +  ++     + +    
Sbjct: 258 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTRKVTEVK-- 314

Query: 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333
                 +  L  S++ + + V  D G ++ F L+
Sbjct: 315 ----NNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 6/87 (6%)

Query: 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH 328
           DG L+A  S +G    I +         V +  +   I  +    + +   +   +    
Sbjct: 14  DGDLIAFVS-RGQ-AFIQDVSGT----YVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDF 67

Query: 329 VFNLKVNSGSARSEPRSTSDPTLPTSS 355
           +      +G A     +  +       
Sbjct: 68  LGIYDYRTGKAEKFEENLGNVFAMGVD 94

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFS--SNA 315
           +     +       +A    K   VR  +  D  +   V+  G   + + ++ FS    +
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 316 QWLAVSSDKGTVHVFNLK 333
           Q+L    + G V V+   
Sbjct: 78  QYLCSGDESGKVIVWGWT 95

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316
           H+  I   + + DG+ L ++  +G  +  ++   G   +          I  +  +S   
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRVFPDV-HATMITGIKTTSKGD 68

Query: 317 WLAVSSDKGTVHV 329
              VS D     V
Sbjct: 69  LFTVSWDDHLKVV 81

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 13/88 (14%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT 350
           G++ Q VR G ++A I +L+ S++ + L  +  +G ++ +++     +  S         
Sbjct: 2   GSIDQ-VRYGHNKA-ITALSSSADGKTLFSADAEGHINSWDIS----TGISNRVFPDVHA 55

Query: 351 LPTSSLSFIKGVLPKYFSSEWSVAQFRL 378
              + +           S +  +     
Sbjct: 56  TMITGIKTTSKGDLFTVSWDDHLKVVPA 83

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 22/274 (8%), Positives = 60/274 (21%), Gaps = 29/274 (10%)

Query: 83  SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL 142
           +P   + + + N+           G  +   D      R     G  +            
Sbjct: 42  APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES 101

Query: 143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-RIIVVLEQKIFVYNF 201
            +       +    +V ++D              ++  +   RD   +  L + + V + 
Sbjct: 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161

Query: 202 ADLKLLHQIETIANPKGLCAVSQG----------------------VGSLVLVCPGLQKG 239
               L+      +      A                                        
Sbjct: 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221

Query: 240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299
                       + +   D      A+         +      +  F+      ++ V  
Sbjct: 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV---LESFDLEKNASIKRVPL 278

Query: 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333
                  YS+  S++   + +    G +  ++ +
Sbjct: 279 PH---SYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	432
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.62
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.57
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.54
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.41
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.37
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.36
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.31
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.31
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.29
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.25
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.2
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.18
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.11
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.05
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.04
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.99
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.94
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.92
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.88
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.77
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.73
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.68
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.68
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.63
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.36
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.29
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.09
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.99
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.95
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.94
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.8
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.8
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.78
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.68
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.66
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.59
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.59
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.42
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.23
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.08
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.9
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.7
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.65
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.65
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.63
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.47
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.27
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.08
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.41
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.9
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.65
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	85.19
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	84.74

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-42  Score=308.93  Aligned_cols=278  Identities=13%  Similarity=0.119  Sum_probs=240.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeE---EEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      .|...|+|++|+|+|++|++|+|+.|+|||+......   ..... .+|...|.+++|++++..|++++.|     +.|+
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~-~~h~~~I~~v~~s~dg~~l~s~~~d-----g~i~  122 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC-LNRDNYIRSCKLLPDGCTLIVGGEA-----STLS  122 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEEC-SCTTSBEEEEEECTTSSEEEEEESS-----SEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeee-cCCCCcEEEEEEcCCCCEEEEeecc-----cccc
Confidence            6999999999999999999999877999999654322   12222 2688899999999999999999999     9999


Q ss_pred             EEeCCCC--ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007          160 IWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (432)
Q Consensus       160 iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      +||+...  +....+. |...+..++|+|++.++++   |+.|++|++.+++.......+...+.+++|++++..++.+ 
T Consensus       123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~-  201 (337)
T d1gxra_         123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG-  201 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            9998754  4455555 8889999999999988874   7899999999999988888899999999999998865443 


Q ss_pred             ecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (432)
Q Consensus       234 ~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~  313 (432)
                        +.|+.+++||++++.......|...|.+++|+|++++|++++.|+. |++||+++++.....   .|...|++++|+|
T Consensus       202 --~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~---~~~~~i~~v~~s~  275 (337)
T d1gxra_         202 --GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQLH---LHESCVLSLKFAY  275 (337)
T ss_dssp             --ETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEEEC---CCSSCEEEEEECT
T ss_pred             --cccccccccccccceeecccccccceEEEEEcccccccceeccccc-ccccccccccccccc---ccccccceEEECC
Confidence              3799999999998776666678999999999999999999999999 999999988876443   3778999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC
Q 014007          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN  393 (432)
Q Consensus       314 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  393 (432)
                      ++++|++++.||.|++||+.+++.+                                    ....|.+.|.+++|+|+++
T Consensus       276 ~g~~l~s~s~Dg~i~iwd~~~~~~~------------------------------------~~~~~~~~v~~~~~s~d~~  319 (337)
T d1gxra_         276 CGKWFVSTGKDNLLNAWRTPYGASI------------------------------------FQSKESSSVLSCDISVDDK  319 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEE------------------------------------EEEECSSCEEEEEECTTSC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEE------------------------------------EEccCCCCEEEEEEeCCCC
Confidence            9999999999999999999887621                                    2234778899999999999


Q ss_pred             EEEEEecCCeEEEEEe
Q 014007          394 TVVILGMDGSFYRCQF  409 (432)
Q Consensus       394 ~l~~~~~dg~v~iw~~  409 (432)
                      +|++|+.||.|+||++
T Consensus       320 ~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         320 YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEEE
Confidence            9999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.4e-40  Score=290.99  Aligned_cols=282  Identities=15%  Similarity=0.208  Sum_probs=249.6

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ...+.+|.+.|++|+|+|++++|++|+ |+.|+|||+.+++..  ..+. +|...|.++.+++++..++++..+     +
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~--~~~~-~h~~~V~~~~~~~~~~~~~~~~~~-----~   81 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLK-GHTDSVQDISFDHSGKLLASCSAD-----M   81 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE--EEEe-CCCCcEEEEeeecccccccccccc-----c
Confidence            456789999999999999999999998 555999999988766  5565 689999999999999999999888     9


Q ss_pred             eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      .+.+|+....+....+. +...+.++.+++++..+++   |+.+++||+++++.+..+..+...+..+++++++..+  +
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~  159 (317)
T d1vyhc1          82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI--A  159 (317)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE--E
T ss_pred             ccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEE--E
Confidence            99999988888777776 8999999999999988874   8999999999999999999999999999999998754  3


Q ss_pred             eecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCC--------------------CCEEEEEcCCCceEEEEECCCC
Q 014007          233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD--------------------GQLLATSSTKGTLVRIFNTLDG  291 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~--------------------~~~l~~~~~dg~~i~vwd~~~~  291 (432)
                      + ++.|+.|++|++.... ...+..|...+.++.|+|+                    +.++++++.|+. |++||++++
T Consensus       160 ~-~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~  237 (317)
T d1vyhc1         160 S-CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTG  237 (317)
T ss_dssp             E-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTT
T ss_pred             E-EeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE-EEEEECCCC
Confidence            3 3489999999998854 4567789999999999875                    347899999999 999999999


Q ss_pred             ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW  371 (432)
Q Consensus       292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (432)
                      +++..+..  |...|.+++|+|++++|++++.||.|+|||+.+++.                                  
T Consensus       238 ~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------------------------------  281 (317)
T d1vyhc1         238 MCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC----------------------------------  281 (317)
T ss_dssp             EEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC----------------------------------
T ss_pred             cEEEEEeC--CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcE----------------------------------
Confidence            99999985  668999999999999999999999999999998763                                  


Q ss_pred             eeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007          372 SVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       372 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~  408 (432)
                       +..+.+|.+.|++++|+|++++|++|+.||.|+||+
T Consensus       282 -~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         282 -MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             -CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             -EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence             446788999999999999999999999999999995

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.3e-40  Score=292.49  Aligned_cols=281  Identities=13%  Similarity=0.149  Sum_probs=235.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      +.+.+.+++++|+|+.|+.+.++.|.+|++++....  ..+. +|...|.++.|+|++.++++|+.|     |.|++||+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~--~~~~-~H~~~v~~~~~sp~g~~latg~~d-----g~i~iwd~   87 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDT--EIYT-EHSHQTTVAKTSPSGYYCASGDVH-----GNVRIWDT   87 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCC--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEES
T ss_pred             CCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCcee--EEEc-CCCCCEEEEEEeCCCCeEeccccC-----ceEeeeee
Confidence            344566789999999999998888999999877655  4454 688999999999999999999999     99999999


Q ss_pred             CCCcee--EEee-cCCceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007          164 HQSRCI--GELS-FRSEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       164 ~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      .+++..  ..+. |...|.+++|+|++.++++     +..+++|++++++....+..|...+..++|+|+++.++ ++ |
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l-~s-g  165 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI-IS-G  165 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEE-EE-E
T ss_pred             eccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeee-cc-c
Confidence            887654  3455 8899999999999988773     35699999999999889999999999999999988654 33 4


Q ss_pred             CCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC-----CCcCceEEE
Q 014007          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-----ADRAEIYSL  309 (432)
Q Consensus       236 ~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-----~~~~~i~~~  309 (432)
                      +.|+.|++||+++.. ...+..|...|+++.|+|++++|++++.|+. |++||+.+++.+..+...     .|...|+++
T Consensus       166 s~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccCcccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            589999999999854 4556789999999999999999999999999 999999999988877542     256789999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC-CceEEEE
Q 014007          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-SPYIVAF  388 (432)
Q Consensus       310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~  388 (432)
                      +|+|++++|++|+.||.|+|||+++++.                                   +.++..|.. ....+.+
T Consensus       245 ~~s~~~~~l~tgs~Dg~v~iwd~~t~~~-----------------------------------~~~l~~~~~~~~~~~~~  289 (311)
T d1nr0a1         245 TWSPDGTKIASASADKTIKIWNVATLKV-----------------------------------EKTIPVGTRIEDQQLGI  289 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEE-----------------------------------EEEEECCSSGGGCEEEE
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCcE-----------------------------------EEEEECCCCccceEEEE
Confidence            9999999999999999999999998763                                   234444432 2334555


Q ss_pred             ccCCCEEEEEecCCeEEEEEec
Q 014007          389 GHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       389 s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                      .++++.|++++.||.|++|+.|
T Consensus       290 ~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         290 IWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EECSSCEEEEETTCCEEEEETT
T ss_pred             EecCCEEEEEECCCEEEEEeCC
Confidence            6677889999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-39  Score=296.79  Aligned_cols=281  Identities=16%  Similarity=0.180  Sum_probs=227.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeec---------------ccCcceeEEEEeeeCCeEEEecC
Q 014007           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDF---------------ERGGGIGVVEMLFRCNILALVGG  147 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~~s~  147 (432)
                      +|.+.|+||+|+|||++||+|+|+.|+||++.+++.......               ...+...|.+++|++++..++++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            599999999999999999999988899999987765432110               02466779999999999999999


Q ss_pred             CCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEe
Q 014007          148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (432)
Q Consensus       148 ~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  223 (432)
                      +.|     |.|++||...++.+..+. |...|.++.+++++..++.   ++.+++||.++.........+... ..+.+.
T Consensus       140 ~~d-----g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~  213 (388)
T d1erja_         140 AED-----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV-TTVAVS  213 (388)
T ss_dssp             ETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE-EEEEEC
T ss_pred             ccc-----cccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccc-cccccc
Confidence            999     999999999999888888 8999999999999887773   889999999998877766554444 345555


Q ss_pred             cCCCcEEEEeecCCCCcEEEEEccCCcee--------eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceE-
Q 014007          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTK--------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL-  294 (432)
Q Consensus       224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~-  294 (432)
                      +....+ +++ |+.|+.|++||..+....        ...+|...|.+++|+|++++|++++.|+. |++||+++++.. 
T Consensus       214 ~~~~~~-l~~-~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~  290 (388)
T d1erja_         214 PGDGKY-IAA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKS  290 (388)
T ss_dssp             STTCCE-EEE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC-------
T ss_pred             CCCCCe-EEE-EcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc-EEEEeccCCcccc
Confidence            543333 333 348999999999874332        23468899999999999999999999999 999999865432 


Q ss_pred             -----------EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007          295 -----------QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (432)
Q Consensus       295 -----------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                                 ....  .|...|.+++|+|++++|++|+.||.|++||+++++.                          
T Consensus       291 ~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--------------------------  342 (388)
T d1erja_         291 DSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--------------------------  342 (388)
T ss_dssp             --------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE--------------------------
T ss_pred             ccccccccceeeecc--cccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE--------------------------
Confidence                       2222  3668899999999999999999999999999998763                          


Q ss_pred             cceeecceeeEEEEecCCCceEEEE------ccCCCEEEEEecCCeEEEEEe
Q 014007          364 PKYFSSEWSVAQFRLVEGSPYIVAF------GHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~~dg~v~iw~~  409 (432)
                               +..+++|.+.|.++++      +|++++|++|+.||+|+||++
T Consensus       343 ---------~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         343 ---------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             ---------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             ---------EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence                     4568899999998874      678999999999999999998

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-37  Score=281.18  Aligned_cols=285  Identities=13%  Similarity=0.123  Sum_probs=239.2

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ...++.+|.+.|++|+|+|++++|++|+ |+.|+|||+.+++..  ..+. .|...|.+++|++++..+++++.|     
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~--~~~~-~~~~~v~~v~~~~~~~~l~~~~~d-----  118 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV--HAIP-LRSSWVMTCAYAPSGNYVACGGLD-----  118 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE--EEEE-CSCSCEEEEEECTTSSEEEEEETT-----
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeE--EEEe-cccccEEeeEeeccceeeeeeccc-----
Confidence            3467889999999999999999999998 455999999988766  4554 688999999999999999999999     


Q ss_pred             CeEEEEeCCCCc----eeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          156 NKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       156 ~~v~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      +.+++|+.....    ....+. |...........+.....  .+.....+.................+....+.+.+..
T Consensus       119 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (340)
T d1tbga_         119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL  198 (340)
T ss_dssp             CCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             ceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccce
Confidence            999999976653    333444 555666666666655555  3788889998887777777677777777777777664


Q ss_pred             EEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      ++  + |..|+.|++||+++.. ...+.+|...|++++|+|++++|++|+.|+. |++||++..+.+..+....+...|.
T Consensus       199 ~~--~-~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~~~~~~~~~~~~~~~i~  274 (340)
T d1tbga_         199 FV--S-GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             EE--E-EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             eE--E-eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe-EEEEeecccccccccccccccCceE
Confidence            43  2 4489999999998854 4567899999999999999999999999999 9999999999888887666677899


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  387 (432)
                      +++|+|++++|++|+.||.|++||+.+++.                                   +..+.+|.+.|++++
T Consensus       275 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-----------------------------------~~~~~~H~~~V~~l~  319 (340)
T d1tbga_         275 SVSFSKSGRLLLAGYDDFNCNVWDALKADR-----------------------------------AGVLAGHDNRVSCLG  319 (340)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEEETTTCCE-----------------------------------EEEECCCSSCEEEEE
T ss_pred             EEEECCCCCEEEEEECCCEEEEEECCCCcE-----------------------------------EEEEcCCCCCEEEEE
Confidence            999999999999999999999999988763                                   456778999999999


Q ss_pred             EccCCCEEEEEecCCeEEEEE
Q 014007          388 FGHQKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       388 ~s~~~~~l~~~~~dg~v~iw~  408 (432)
                      |+|++++|++|+.||.|+||+
T Consensus       320 ~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         320 VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEEC
T ss_pred             EeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-37  Score=283.05  Aligned_cols=315  Identities=12%  Similarity=0.070  Sum_probs=230.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      +.++|+|++|+|||++||+|+.++ |+||++++.+......+. +|...|.+++|+|++.++++++.|     +.|++||
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~-gH~~~V~~l~fsp~~~~l~s~s~D-----~~i~vWd   79 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWT   79 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETT-----SCEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec-CCCCCEEEEEECCCCCEEEEEECC-----CeEEEEe
Confidence            457899999999999999998655 999999888766667776 799999999999999999999999     9999999


Q ss_pred             CCCCceeEEe--e-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeee----EEEeeccCCcceEEEecCCCcEEEE
Q 014007          163 DHQSRCIGEL--S-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLL----HQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       163 ~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      +.++.....+  . |...|.+++|+|++..+++   |+.|++|++......    .....+...+.+++|+|++..+  +
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l--~  157 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL--A  157 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE--E
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccce--e
Confidence            9877654443  3 7889999999999998873   889999998765432    2234466788899999998754  3


Q ss_pred             eecCCCCcEEEEEccCCc-------------------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce
Q 014007          233 CPGLQKGQVRVEHYASKR-------------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (432)
Q Consensus       233 ~~g~~d~~i~i~d~~~~~-------------------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~  293 (432)
                      + |+.|+.|++|+.....                   ......|...|.+++|+|+|++|++++.|+. |++||+.+++.
T Consensus       158 s-~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~~~  235 (371)
T d1k8kc_         158 A-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMA  235 (371)
T ss_dssp             E-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTE
T ss_pred             c-cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc-ceEEeeecccc
Confidence            3 3489999999986521                   2334578889999999999999999999999 99999999999


Q ss_pred             EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC---CCCCCCceeEeec--cccee-
Q 014007          294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP---TLPTSSLSFIKGV--LPKYF-  367 (432)
Q Consensus       294 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~-  367 (432)
                      +..+..  |..+|.+++|+|++++|++|. |+.+++|...................   .............  ..... 
T Consensus       236 ~~~~~~--~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (371)
T d1k8kc_         236 VATLAS--ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG  312 (371)
T ss_dssp             EEEEEC--SSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred             eeeeec--ccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEec
Confidence            999885  568899999999998887665 77777877665432221111000000   0000000000000  00000 


Q ss_pred             ecceeeEEEEecCCCceEEEEccCC----CEEEEEecCCeEEEEEecC
Q 014007          368 SSEWSVAQFRLVEGSPYIVAFGHQK----NTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~v~iw~~~~  411 (432)
                      ...........|.+.|+++++.+.+    ..|++++.||.|+||+++.
T Consensus       313 ~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            0000000112488899999998854    3589999999999999844

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.5e-37  Score=272.00  Aligned_cols=283  Identities=15%  Similarity=0.122  Sum_probs=220.2

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .+++.+|.+.|++++|+|+|++|++|+ |+.|++||+++++..  ..+..+|...|.++.|++++.+++++. |     +
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~--~~~~~~h~~~v~~v~~~~~g~~~~~~~-d-----~   76 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN--RVFPDVHATMITGIKTTSKGDLFTVSW-D-----D   76 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--ECSSCSCSSCEEEEEECTTSCEEEEET-T-----T
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEcCCCCCcEEEEEeeccceeecccc-e-----e
Confidence            467889999999999999999999998 555999999887766  455446889999999999998766554 5     8


Q ss_pred             eEEEEeCCCCcee----EEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007          157 KVMIWDDHQSRCI----GELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       157 ~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      .+++|+.......    ....+...+.++++++++.+++  .++.+++|+...  .....  ....+.+++++|+++.++
T Consensus        77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~  152 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVA  152 (299)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEE
T ss_pred             eEEEeccCCcccccccccccccccccccccccccccccccccccccccccccc--ccccc--cccccccccccccccccc
Confidence            9999997654321    1122678899999999998877  488999999543  22222  334567899999987554


Q ss_pred             EEeecCCCCcEEEEEccCCcee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe-CCCcCceE
Q 014007          231 LVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-GADRAEIY  307 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~-~~~~~~i~  307 (432)
                      +   |+.|+.|++||+++....  ....|...|.+++|+|++++|++++.|+. |++||+.++..+..... ..|...|+
T Consensus       153 ~---g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~~~~~~~~~h~~~v~  228 (299)
T d1nr0a2         153 V---GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVA  228 (299)
T ss_dssp             E---EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred             c---ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            3   348999999999886554  34578999999999999999999999999 99999988766543322 23678999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe-cCCCceEE
Q 014007          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIV  386 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~  386 (432)
                      +++|+|++++|++|+.||.|++||++++.....                                 ..... +...|.++
T Consensus       229 ~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~---------------------------------~~~~~~~~~~v~~~  275 (299)
T d1nr0a2         229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI---------------------------------IIKGAHAMSSVNSV  275 (299)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTCTTSCCE---------------------------------EETTSSTTSCEEEE
T ss_pred             cccccccccceEEEcCCCEEEEEECCCCCcceE---------------------------------EEecCCCCCcEEEE
Confidence            999999999999999999999999988763211                                 01112 23456666


Q ss_pred             EEccCCCEEEEEecCCeEEEEEec
Q 014007          387 AFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       387 ~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                      .| +++++|++++.||.|++|++.
T Consensus       276 ~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         276 IW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EE-EETTEEEEEETTSCEEEEECC
T ss_pred             EE-CCCCEEEEEeCCCEEEEEecc
Confidence            55 667899999999999999984

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=261.60  Aligned_cols=240  Identities=10%  Similarity=0.183  Sum_probs=211.7

Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      ....|.+.|.+++|+|+|++|++|+ |+.|++||+..........+. .|...+..+.|++++..+++++.+     +.|
T Consensus        92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d-----~~i  165 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSD-----GNI  165 (337)
T ss_dssp             ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETT-----SCE
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccc-cccccccccccccccccccccccc-----ccc
Confidence            3567899999999999999999988 455999999866655555665 688889999999999999999988     999


Q ss_pred             EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      ++|++.+++...... |...|.+++|++++..++.   |+.|++||+++++.+..+. +...+..++|+|+++.++.   
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~---  241 (337)
T d1gxra_         166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAV---  241 (337)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEE---
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccce---
Confidence            999999998888777 8999999999999988773   8999999999999887764 6778889999999876543   


Q ss_pred             cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC
Q 014007          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  314 (432)
                      |+.|+.+++||++.........|...|++++|+|++++|++++.|+. |++||+.+++.+..+.   |...|.+++|+|+
T Consensus       242 ~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~~---~~~~v~~~~~s~d  317 (337)
T d1gxra_         242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVD  317 (337)
T ss_dssp             EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTT
T ss_pred             eccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCe-EEEEECCCCCEEEEcc---CCCCEEEEEEeCC
Confidence            34799999999999888888899999999999999999999999999 9999999999998877   6689999999999


Q ss_pred             CCEEEEEeCCCeEEEEEec
Q 014007          315 AQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       315 ~~~l~~~~~dg~i~iwd~~  333 (432)
                      +++|++|+.||+|+|||+-
T Consensus       318 ~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         318 DKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             SCEEEEEETTSCEEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEEE
Confidence            9999999999999999973

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.4e-35  Score=261.64  Aligned_cols=247  Identities=12%  Similarity=0.120  Sum_probs=204.3

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ......+|.+.|++++|+|+|++|++|+ |+.|+||++..........+. .|...|.+++|++++..+++++.+.   +
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~~~~---~  125 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGR---E  125 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCS---S
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccc-cccCccccccccccccccccccccc---c
Confidence            3445678999999999999999999998 555999999887766555665 6888999999999998877765430   1


Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEEecCccE-EEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII-VVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      ..+++|++++++.+..+. |...|.+++|+|++.+ +++   |+.|++||+++++....+..|...+..+.++|+++.++
T Consensus       126 ~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~  205 (311)
T d1nr0a1         126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA  205 (311)
T ss_dssp             CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccc
Confidence            669999999999888888 8899999999999875 442   89999999999999999999999999999999987543


Q ss_pred             EEeecCCCCcEEEEEccCCce-e-------eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC
Q 014007          231 LVCPGLQKGQVRVEHYASKRT-K-------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~~-~-------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~  302 (432)
                      .   ++.|+.|++||...+.. .       ...+|...|++++|+|++++|++|+.|+. |+|||++++++++++..+..
T Consensus       206 ~---~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~-v~iwd~~t~~~~~~l~~~~~  281 (311)
T d1nr0a1         206 S---TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTR  281 (311)
T ss_dssp             E---EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSS
T ss_pred             c---ccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe-EEEEECCCCcEEEEEECCCC
Confidence            2   34799999999987432 2       23468899999999999999999999999 99999999999999986421


Q ss_pred             -cCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          303 -RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       303 -~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                       ...+.++.|  ++.+|++++.||.|++||.+
T Consensus       282 ~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         282 IEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             GGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             ccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence             234555555  55679999999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.5e-35  Score=262.23  Aligned_cols=278  Identities=13%  Similarity=0.184  Sum_probs=214.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc--EEEEEcCCCeeEEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCCCCCeEEEEe
Q 014007           87 TLLHISFNQDHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~v~iwd  162 (432)
                      .+++++|+|+|..|++++++.  |+.|+...........+.+++...+.+++|+|  ++.++++++.|     |+|++||
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~D-----g~i~iWd   93 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES-----GKVIVWG   93 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT-----SEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCC-----CCEEEee
Confidence            457889999999999987666  45555433333333455534567899999987  67899999999     9999999


Q ss_pred             CCCCcee--------EEee-cCCceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007          163 DHQSRCI--------GELS-FRSEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (432)
Q Consensus       163 ~~~~~~~--------~~~~-~~~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      +..++..        ..+. +.++|.+++|++++.++++     ++.+++|+..+++.+..+..|...+.+++|+++++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             ecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccc
Confidence            8765422        1233 7789999999999988773     568999999999999999999999999999999887


Q ss_pred             EEEEeecCCCCcEEEEEccCCce----eeeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc
Q 014007          229 LVLVCPGLQKGQVRVEHYASKRT----KFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~~----~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~  303 (432)
                      ++++  ++.|+.+++||......    .....|...|.+++|+|+ +.+|++++.|+. |++||+++++++..+..+  .
T Consensus       174 ~~~~--~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~~~~~~~l~~~--~  248 (325)
T d1pgua1         174 RSMT--VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIEDD--Q  248 (325)
T ss_dssp             EEEE--EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEEEECCBT--T
T ss_pred             eEEE--eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeecccccccccccc--c
Confidence            6543  34799999999877433    223467888999999996 689999999999 999999999999998853  3


Q ss_pred             CceEEEEEC---CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC
Q 014007          304 AEIYSLAFS---SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE  380 (432)
Q Consensus       304 ~~i~~~~~s---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (432)
                      ..+.++.|+   ++|++|++++.|+.|+|||+++++.                                   +..+..|.
T Consensus       249 ~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~-----------------------------------~~~~~~~~  293 (325)
T d1pgua1         249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC-----------------------------------VQKWTLDK  293 (325)
T ss_dssp             BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE-----------------------------------EEEEECCT
T ss_pred             cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCE-----------------------------------EEEEEecC
Confidence            444444443   6899999999999999999998763                                   22344444


Q ss_pred             CC--ceEEEEccC-CCEEEEEecCCeEEEEEe
Q 014007          381 GS--PYIVAFGHQ-KNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       381 ~~--v~~~~~s~~-~~~l~~~~~dg~v~iw~~  409 (432)
                      ..  +..+++.+. +.+|++++.||.|++|++
T Consensus       294 ~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         294 QQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            33  344555443 347899999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-32  Score=247.94  Aligned_cols=278  Identities=14%  Similarity=0.213  Sum_probs=202.6

Q ss_pred             CcccCCCCCCCe-EEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007           77 AESTSSSPPPTL-LHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (432)
Q Consensus        77 ~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (432)
                      +..++.+|.+.| +|++|  ++++|++|+. +.|+|||+.+++..  ..+. +|...|.+++|++++ .+++++.|    
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~--~~l~-~H~~~V~~l~~s~~~-~l~s~s~D----   73 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL--LQLS-GHDGGVWALKYAHGG-ILVSGSTD----   73 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEE--EEEE-CCSSCEEEEEEETTT-EEEEEETT----
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEE--EEEE-CCCCCEEEEEEcCCC-EEEEEecc----
Confidence            456688998886 66655  5789999985 45999999988766  5665 799999999999875 57788888    


Q ss_pred             CCeEEEEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEc---------------------------
Q 014007          155 LNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNF---------------------------  201 (432)
Q Consensus       155 ~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~---------------------------  201 (432)
                       +.|++|++...+......   +........+.+++.+++.   |+.|++||+                           
T Consensus        74 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (355)
T d1nexb2          74 -RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY  152 (355)
T ss_dssp             -CCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTT
T ss_pred             -cccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccc
Confidence             999999988877655544   1222333444555544442   555555554                           


Q ss_pred             ------------------------------------CCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEE
Q 014007          202 ------------------------------------ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (432)
Q Consensus       202 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d  245 (432)
                                                          ++++.+.....+...+..+.+++++..++.   ++.|+.|++||
T Consensus       153 ~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~i~i~d  229 (355)
T d1nexb2         153 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS---ASMDTTIRIWD  229 (355)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEE---EETTSCEEEEE
T ss_pred             eeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeec---ccccceEEeee
Confidence                                                444444444444455566778888775543   34799999999


Q ss_pred             ccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEE-EEECCCCCEEEEEeC
Q 014007          246 YASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS-LAFSSNAQWLAVSSD  323 (432)
Q Consensus       246 ~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~  323 (432)
                      ++++ .+..+.+|...|.+++|+  +++|++++.||. |++||++++.......   + ..+.+ ..+++++++|++| .
T Consensus       230 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~-i~iwd~~~~~~~~~~~---~-~~~~~~~~~~~~~~~l~~g-~  301 (355)
T d1nexb2         230 LENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDYSRKFSYH---H-TNLSAITTFYVSDNILVSG-S  301 (355)
T ss_dssp             TTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSE-EEEEETTTCCEEEEEE---C-TTCCCCCEEEECSSEEEEE-E
T ss_pred             ccccccccccccccccccccccc--cceeeeeecccc-cccccccccceecccc---c-CCceEEEEEcCCCCEEEEE-e
Confidence            9885 456678999999999996  468999999999 9999999887665543   2 33444 4567788877766 4


Q ss_pred             CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCe
Q 014007          324 KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS  403 (432)
Q Consensus       324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  403 (432)
                      ||.|+|||+++++.+...                                  +.+|.+.|++++|+|+ ..|++++.||.
T Consensus       302 d~~i~vwd~~tg~~~~~~----------------------------------~~~~~~~V~~v~~~~~-~~~~~~s~dg~  346 (355)
T d1nexb2         302 ENQFNIYNLRSGKLVHAN----------------------------------ILKDADQIWSVNFKGK-TLVAAVEKDGQ  346 (355)
T ss_dssp             TTEEEEEETTTCCBCCSC----------------------------------TTTTCSEEEEEEEETT-EEEEEEESSSC
T ss_pred             CCEEEEEECCCCCEEEEE----------------------------------ecCCCCCEEEEEEcCC-eEEEEEECCCc
Confidence            899999999998854321                                  2346778999999986 57888999999


Q ss_pred             EEEEEecC
Q 014007          404 FYRCQFDP  411 (432)
Q Consensus       404 v~iw~~~~  411 (432)
                      ++||.+|.
T Consensus       347 ~~l~~~df  354 (355)
T d1nexb2         347 SFLEILDF  354 (355)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence            98888763

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-31  Score=246.66  Aligned_cols=286  Identities=16%  Similarity=0.181  Sum_probs=218.8

Q ss_pred             EEEcCCcEEEEEcCCCee---EEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee----
Q 014007          101 AAGTDHGFRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----  173 (432)
Q Consensus       101 ~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~----  173 (432)
                      ....++.+.+|+....+.   .+...+  +|...|.+++|++++.+|++|+ |     +.|+|||+.+++.+..+.    
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~H~~~V~~l~fs~dg~~lasg~-d-----~~i~iW~~~~~~~~~~~~~~~~  104 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDVELHKSL--DHTSVVCCVKFSNDGEYLATGC-N-----KTTQVYRVSDGSLVARLSDDSA  104 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEEEEEEEE--ECSSCCCEEEECTTSSEEEEEC-B-----SCEEEEETTTCCEEEEECC---
T ss_pred             ccCCCCcEEEeCCCCCcceeeeeEeeC--CCCCcEEEEEECCCCCEEEEEe-C-----CeEEEEEecccceEeeeccccc
Confidence            333455577887543322   222334  4899999999999999999986 7     899999999988776553    


Q ss_pred             ---------------cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007          174 ---------------FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       174 ---------------~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                                     |...|.+++|+|++.++++   |+.|++||...++.+..+..|...+..+.+++++..++.+   
T Consensus       105 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~---  181 (388)
T d1erja_         105 ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG---  181 (388)
T ss_dssp             --------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE---
T ss_pred             ccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccccccc---
Confidence                           4556999999999998884   8999999999999999999999999999999988765433   


Q ss_pred             CCCCcEEEEEccCCceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEe-----CCCcCceEEE
Q 014007          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-----GADRAEIYSL  309 (432)
Q Consensus       236 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~-----~~~~~~i~~~  309 (432)
                      +.++.+++||.+.........+.....++.+++ ++++|++++.|+. |++||..+++.+..+..     ..|...|.++
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  260 (388)
T d1erja_         182 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA-VRVWDSETGFLVERLDSENESGTGHKDSVYSV  260 (388)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSC-EEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred             ccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCe-EEEeecccCccceeeccccccccCCCCCEEEE
Confidence            478999999999876665555555556666655 8899999999999 99999999988776643     1356789999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEc
Q 014007          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG  389 (432)
Q Consensus       310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  389 (432)
                      +|+|++++|++++.||.|++||+.+........                       .............|.+.|.+++|+
T Consensus       261 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~v~~~~~s  317 (388)
T d1erja_         261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK-----------------------TPNSGTCEVTYIGHKDFVLSVATT  317 (388)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEC--------------------------------------CEEEEEECCSSCEEEEEEC
T ss_pred             EECCCCCEEEEEECCCcEEEEeccCCccccccc-----------------------cccccceeeecccccceEEEEEEC
Confidence            999999999999999999999998876432110                       001111244567788999999999


Q ss_pred             cCCCEEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007          390 HQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYN  423 (432)
Q Consensus       390 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  423 (432)
                      |++++|++|+.||.|++|++  .+++.+..++.|
T Consensus       318 ~~~~~l~sg~~dg~i~vwd~--~~~~~~~~l~~H  349 (388)
T d1erja_         318 QNDEYILSGSKDRGVLFWDK--KSGNPLLMLQGH  349 (388)
T ss_dssp             GGGCEEEEEETTSEEEEEET--TTCCEEEEEECC
T ss_pred             CCCCEEEEEeCCCEEEEEEC--CCCcEEEEEeCC
Confidence            99999999999999999987  455666665543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-31  Score=240.51  Aligned_cols=285  Identities=19%  Similarity=0.285  Sum_probs=209.2

Q ss_pred             CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (432)
Q Consensus        77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~  155 (432)
                      ...++.+|.+.|.+ +++++|++|++|+ |+.|+|||+.+++..  ..+. +|...|.++.|+++  .+++++.|     
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~--~~~~-~h~~~V~~v~~~~~--~l~s~s~D-----   76 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLV-GHTGGVWSSQMRDN--IIISGSTD-----   76 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEE--EECC-CCSSCEEEEEEETT--EEEEEETT-----
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEE--EEEe-CCCCCEEEEEeCCC--ccccceec-----
Confidence            34567899999865 4667899999998 555999999988765  5665 78999999999986  67788888     


Q ss_pred             CeEEEEeCCCCceeEEee-cCCceEEEEE--------------------------------------ecCc-cEEE--eC
Q 014007          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKL--------------------------------------RRDR-IIVV--LE  193 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~--------------------------------------~~~~-~~~~--~d  193 (432)
                      +.+++|+........... +...+.....                                      .... ..+.  .|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred             ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCC
Confidence            999999877654433322 1211111111                                      1111 2222  27


Q ss_pred             CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCE
Q 014007          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQL  272 (432)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~  272 (432)
                      +.|++||....+.+..+..+...  ...+.+++..+  ++ ++.||.|++||++.. .+..+..|...+.++.++  +++
T Consensus       157 ~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l--~s-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~  229 (342)
T d2ovrb2         157 FMVKVWDPETETCLHTLQGHTNR--VYSLQFDGIHV--VS-GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNI  229 (342)
T ss_dssp             SCEEEEEGGGTEEEEEECCCSSC--EEEEEECSSEE--EE-EETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTE
T ss_pred             CeEEEeecccceeeEEEcCcccc--cccccCCCCEE--EE-EeCCCeEEEeecccceeeeEecccccceeEEecC--CCE
Confidence            88899998888887777766544  45566666644  33 348999999999884 456678899999988875  469


Q ss_pred             EEEEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCC
Q 014007          273 LATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTL  351 (432)
Q Consensus       273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  351 (432)
                      |++++.|+. |++||+...+....+..+ .|...+.++.++  ++++++|+.||+|++||+++++.+..+.         
T Consensus       230 l~s~s~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~---------  297 (342)
T d2ovrb2         230 LVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLV---------  297 (342)
T ss_dssp             EEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---------
T ss_pred             EEEEcCCCE-EEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEe---------
Confidence            999999999 999999999988888753 244567777775  5799999999999999999987322110         


Q ss_pred             CCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCe----EEEEEecCC
Q 014007          352 PTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS----FYRCQFDPV  412 (432)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----v~iw~~~~~  412 (432)
                                           .....+|.+.|++++|+|++.+|++|+.||+    |++|++|.+
T Consensus       298 ---------------------~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         298 ---------------------TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             ---------------------ECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             ---------------------cccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence                                 0001246678999999999999999999985    999999764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-32  Score=248.32  Aligned_cols=242  Identities=14%  Similarity=0.108  Sum_probs=197.4

Q ss_pred             cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc--eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEc
Q 014007          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNF  201 (432)
Q Consensus       128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~  201 (432)
                      ...+|.+++|++++..+++++.|     +.|++||+.+++  .+..+. |.++|.+++|+|++.++++   |++|++||+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCC-----CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEee
Confidence            34678999999999999999988     999999998775  556666 9999999999999998884   899999999


Q ss_pred             CCCeeeE--EEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-----eeeeccCCceeEEEEcCCCCEEE
Q 014007          202 ADLKLLH--QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----KFIMAHDSRIACFALTQDGQLLA  274 (432)
Q Consensus       202 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-----~~~~~~~~~i~~~~~sp~~~~l~  274 (432)
                      .++....  .+..+...+.+++|+|+++.++++   +.|+.+++|++.....     .....|...|.+++|+|++++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~---s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~  157 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVG---SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  157 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEE---ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccceee---cccCcceeeeeeccccccccccccccccccccccccccccccee
Confidence            8765443  345677889999999999865433   3789999999877432     23456889999999999999999


Q ss_pred             EEcCCCceEEEEECCCCce----------------EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          275 TSSTKGTLVRIFNTLDGTL----------------LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       275 ~~~~dg~~i~vwd~~~~~~----------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      +|+.|+. |++||......                ........|...|.+++|+|+|++|++++.|+.|++||+.+++. 
T Consensus       158 s~s~D~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~-  235 (371)
T d1k8kc_         158 AGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA-  235 (371)
T ss_dssp             EEETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-
T ss_pred             ccccCcE-EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccc-
Confidence            9999999 99999864321                11223334678899999999999999999999999999988762 


Q ss_pred             CCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCC
Q 014007          339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG  414 (432)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~  414 (432)
                                                        +..+..|...|.+++|+||+++|++| .|+.+++|.++...+
T Consensus       236 ----------------------------------~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~  276 (371)
T d1k8kc_         236 ----------------------------------VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAG  276 (371)
T ss_dssp             ----------------------------------EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTT
T ss_pred             ----------------------------------eeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCc
Confidence                                              45677888999999999999888754 588888988876543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.2e-32  Score=238.36  Aligned_cols=246  Identities=13%  Similarity=0.136  Sum_probs=198.1

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEE--eCCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~--~d~~i~  197 (432)
                      +.+. ||...|.+++|+|++.+|++++.|     +.|++||+.+++.+..+.  |...|.+++|+|++.+++  .|+.++
T Consensus         6 ~~~~-GH~~~V~~l~~s~dg~~l~s~s~D-----g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~   79 (299)
T d1nr0a2           6 QVRY-GHNKAITALSSSADGKTLFSADAE-----GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLK   79 (299)
T ss_dssp             EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEE
T ss_pred             eEcC-CCCCCcEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEE
Confidence            4555 899999999999999999999999     999999999999888875  889999999999998877  399999


Q ss_pred             EEEcCCCee---eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEE
Q 014007          198 VYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA  274 (432)
Q Consensus       198 i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~  274 (432)
                      +|+......   ......+...+..++++++++.++..    .++.+.+|+....  .. ......+.+++|+|++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~----~~~~i~~~~~~~~--~~-~~~~~~~~~~~~s~~~~~l~  152 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA----CYKHIAIYSHGKL--TE-VPISYNSSCVALSNDKQFVA  152 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE----ESSEEEEEETTEE--EE-EECSSCEEEEEECTTSCEEE
T ss_pred             EeccCCcccccccccccccccccccccccccccccccc----ccccccccccccc--cc-cccccccccccccccccccc
Confidence            999765321   12223455667789999998754322    4678999985432  11 22445678999999999999


Q ss_pred             EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (432)
Q Consensus       275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (432)
                      +|+.|+. |++||+++++....... .|...|++++|+|++++|++++.|+.|++||+.++.....              
T Consensus       153 ~g~~dg~-i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~--------------  216 (299)
T d1nr0a2         153 VGGQDSK-VHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH--------------  216 (299)
T ss_dssp             EEETTSE-EEEEEEETTEEEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC--------------
T ss_pred             ccccccc-ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc--------------
Confidence            9999999 99999988876543332 2678999999999999999999999999999988763221              


Q ss_pred             CceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCC
Q 014007          355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG  414 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~  414 (432)
                                        ...+..|...|++++|+|++++|++|+.||.|++|+++....
T Consensus       217 ------------------~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         217 ------------------TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             ------------------CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             ------------------cccccccccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence                              112456888999999999999999999999999999866443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-32  Score=238.95  Aligned_cols=266  Identities=10%  Similarity=0.113  Sum_probs=209.2

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .+++.+|...|++++|+|    |++|+ |+.|++||+.+..        .+|...|.++.+.++.. +++++.|     +
T Consensus         6 i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~--------~~h~~~V~~~~~~~~~~-~~s~s~D-----~   67 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH--------QDHSNLIVSLDNSKAQE-YSSISWD-----D   67 (287)
T ss_dssp             EEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE--------CCCCSCEEEEECCSTTC-CEEEETT-----T
T ss_pred             eEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC--------CCCCCCEEEEEecCCCe-EEEEeec-----c
Confidence            356789999999999998    77777 5569999976421        25888999999987755 5677777     9


Q ss_pred             eEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      +|++|++..      ......+..+.+++++..++.  ++.+.+|+..+++.+..+....   ...+++++++.+++.  
T Consensus        68 ~v~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~--  136 (287)
T d1pgua2          68 TLKVNGITK------HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS---PGSAVSLSQNYVAVG--  136 (287)
T ss_dssp             EEEETTEEE------EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS---CEEEEEECSSEEEEE--
T ss_pred             ccccccccc------cccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc---eeeeeeccCcceeee--
Confidence            999999643      234567788899999887773  7889999999988887775432   356788888765543  


Q ss_pred             cCCCCcEEEEEccCCcee-e-eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007          235 GLQKGQVRVEHYASKRTK-F-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~~~-~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s  312 (432)
                      +..++.+++|++...... . ...|...+++++|+|++.+|++|+.||. |++||+.+++....... .|...|.+++|+
T Consensus       137 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~-~h~~~v~~~~~~  214 (287)
T d1pgua2         137 LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRWA-FRTSKINAISWK  214 (287)
T ss_dssp             ETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCSC-CCSSCEEEEEEC
T ss_pred             ccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc-ccceeeccccccccccc-ccccccceeeec
Confidence            345578999998764332 2 3357889999999999999999999999 99999998887654322 377899999998


Q ss_pred             CC----------CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCC
Q 014007          313 SN----------AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS  382 (432)
Q Consensus       313 ~~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (432)
                      |+          +.+|++|+.|++|+|||+++....                                  +..+.+|.+.
T Consensus       215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~----------------------------------~~~~~~h~~~  260 (287)
T d1pgua2         215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI----------------------------------IKALNAHKDG  260 (287)
T ss_dssp             CCC------CCSCCEEEEEETTSCEEEEESSCTTCC----------------------------------EEETTSSTTC
T ss_pred             ccccccccccCCCCeeEeecCCCeEEEEECCCCCeE----------------------------------EEEeCCCCCC
Confidence            75          468999999999999999775421                                  3345578899


Q ss_pred             ceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          383 PYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       383 v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                      |++++|+|++ .|++++.||.|++|++
T Consensus       261 V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         261 VNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9999999986 5889999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-31  Score=236.28  Aligned_cols=252  Identities=14%  Similarity=0.220  Sum_probs=220.0

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~  197 (432)
                      ..+. +|...|.+++|+|++.+|++++.|     ++|+|||+.+++.+.++. |...|.+++|++++.+++.   ++.+.
T Consensus        11 ~~L~-GH~~~I~~l~~sp~~~~l~s~s~D-----g~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~   84 (317)
T d1vyhc1          11 YALS-GHRSPVTRVIFHPVFSVMVSASED-----ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK   84 (317)
T ss_dssp             CEEE-CCSSCEEEEEECSSSSEEEEEESS-----SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             EEEc-CCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccc
Confidence            4565 799999999999999999999999     999999999999999998 9999999999999998884   78899


Q ss_pred             EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEE
Q 014007          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATS  276 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~  276 (432)
                      +|+....+....+..+...+..+.++++++.++..   +.|+.+++||++++ ....+..|...+.+++|+|++.+|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1          85 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA---SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE---ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccceeeeccCCCceEEee---ccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEE
Confidence            99998888888888888888899999998865432   37999999999884 456678899999999999999999999


Q ss_pred             cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC--------------------CEEEEEeCCCeEEEEEecCCC
Q 014007          277 STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA--------------------QWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       277 ~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~--------------------~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      +.|+. |++|++.+++.+..+..  +...+.+++|+|++                    .++++++.|+.|++||+++++
T Consensus       162 ~~d~~-v~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  238 (317)
T d1vyhc1         162 SNDQT-VRVWVVATKECKAELRE--HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  238 (317)
T ss_dssp             ETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             eCCCe-EEEEeeccceeeEEEec--CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc
Confidence            99999 99999999999988875  56789999998764                    478899999999999998876


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCc
Q 014007          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGE  416 (432)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~  416 (432)
                      .                                   +..+.+|.+.|.+++|+|++++|++|+.||.|++|++.  +++.
T Consensus       239 ~-----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~  281 (317)
T d1vyhc1         239 C-----------------------------------LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK--NKRC  281 (317)
T ss_dssp             E-----------------------------------EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT--TSCC
T ss_pred             E-----------------------------------EEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECC--CCcE
Confidence            2                                   45678899999999999999999999999999999874  4455


Q ss_pred             ceEeee
Q 014007          417 MTQLEY  422 (432)
Q Consensus       417 ~~~~~~  422 (432)
                      +..++.
T Consensus       282 ~~~~~~  287 (317)
T d1vyhc1         282 MKTLNA  287 (317)
T ss_dssp             CEEEEC
T ss_pred             EEEEcC
Confidence            555543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-30  Score=226.14  Aligned_cols=279  Identities=14%  Similarity=0.241  Sum_probs=208.8

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      ......|...|+|++|  ||++|++|+ |+.|+|||+++++..  ..+. +|...|.++.|+  +.++++++.|     +
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~--~~l~-~H~~~V~~v~~~--~~~l~s~s~D-----~   75 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--RILT-GHTGSVLCLQYD--ERVIITGSSD-----S   75 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--EEEC-CCSSCEEEEECC--SSEEEEEETT-----S
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEE--EEEe-cCCCCEeeeecc--cceeeccccc-----c
Confidence            4456778899999765  788999998 555999999888766  5665 789999999885  4578888888     9


Q ss_pred             eEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeee---EEEeeccCCcceEEEecCCCcEEE
Q 014007          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL---HQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      .|++|++..+....................+.++.  .++.+.+|+.......   ..+..+...+....+..  ...+ 
T Consensus        76 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~-  152 (293)
T d1p22a2          76 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIV-  152 (293)
T ss_dssp             CEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEE-
T ss_pred             cccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccc-
Confidence            99999999988777776443333333333444443  3889999998875433   33344455554444443  3332 


Q ss_pred             EeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~  310 (432)
                      .  ++.|+.|++||.++.. +..+.++...+..+.++  +.+|++++.|+. |++||+++.+.+..+..  +...+..  
T Consensus       153 ~--~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~v~~--  223 (293)
T d1p22a2         153 S--ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRC--  223 (293)
T ss_dssp             E--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEE--
T ss_pred             c--ccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEecccceeeeeecc--cceeeee--
Confidence            2  2379999999999854 56678888888888775  568999999999 99999999999888874  4456654  


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH  390 (432)
Q Consensus       311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  390 (432)
                      +++++.+|++++.||.|++||+.........                          .....+..+.+|.+.|++++|  
T Consensus       224 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--------------------------~~~~~~~~~~~H~~~V~~v~~--  275 (293)
T d1p22a2         224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAP--------------------------AGTLCLRTLVEHSGRVFRLQF--  275 (293)
T ss_dssp             EECCSSEEEEEETTSCEEEEEHHHHTSTTSC--------------------------TTTTEEEEECCCSSCCCCEEE--
T ss_pred             ccccceEEEEEcCCCEEEEEECCCCcccccc--------------------------CCceeeEEecCCCCCEEEEEE--
Confidence            4567899999999999999999876533211                          111235678889999999998  


Q ss_pred             CCCEEEEEecCCeEEEEE
Q 014007          391 QKNTVVILGMDGSFYRCQ  408 (432)
Q Consensus       391 ~~~~l~~~~~dg~v~iw~  408 (432)
                      ++++|++|+.||+|+|||
T Consensus       276 d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         276 DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CSSCEEECCSSSEEEEEC
T ss_pred             cCCEEEEEecCCEEEEeC
Confidence            567899999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=6.5e-31  Score=238.44  Aligned_cols=276  Identities=12%  Similarity=0.042  Sum_probs=211.6

Q ss_pred             EEEEEcC-CCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007           89 LHISFNQ-DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        89 ~~~~~s~-~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      ..-.||| ||+++|+++++.|++|+++.+...   .+  .|...+.++.|+|++..+++++.+.   ...|++||..+++
T Consensus         6 ~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~---~~--~~~~~v~~~~~spDg~~l~~~~~~~---g~~v~v~d~~~~~   77 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL---KV--PEPLRIRYVRRGGDTKVAFIHGTRE---GDFLGIYDYRTGK   77 (360)
T ss_dssp             GEEEEEECGGGCEEEEETTEEEEECTTSSBEE---EC--SCCSCEEEEEECSSSEEEEEEEETT---EEEEEEEETTTCC
T ss_pred             hcccccCCCCCEEEEEECCeEEEEECCCCcEE---Ec--cCCCCEEEEEECCCCCEEEEEEcCC---CCEEEEEECCCCc
Confidence            4467999 999999999888999999876544   23  4788899999999998887654330   0379999999888


Q ss_pred             eeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee-------cCC
Q 014007          168 CIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP-------GLQ  237 (432)
Q Consensus       168 ~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~  237 (432)
                      ......|...|.+++|+|+++++++   ++.+++|++.+++....+..+...+..++|+|+|+.++++..       +..
T Consensus        78 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~  157 (360)
T d1k32a3          78 AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV  157 (360)
T ss_dssp             EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred             EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecc
Confidence            7766669999999999999999884   889999999999998888888888999999999997765431       334


Q ss_pred             CCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce-------EEEEEeCC---------
Q 014007          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-------LQEVRRGA---------  301 (432)
Q Consensus       238 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~-------~~~~~~~~---------  301 (432)
                      ++.+++||..++....+..+...+..++|+|+|++|++++.++. +++||......       ...+..+.         
T Consensus       158 ~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  236 (360)
T d1k32a3         158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV  236 (360)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred             ccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCc-eEcccccccceeeccccceEEEecccCccccceEC
Confidence            56799999999888888888889999999999999999999999 99998654321       11111100         


Q ss_pred             -------------------------CcCceEEEEECCCCC-------------EEEEEeCCCeEEEEEecCCCCCCCCCC
Q 014007          302 -------------------------DRAEIYSLAFSSNAQ-------------WLAVSSDKGTVHVFNLKVNSGSARSEP  343 (432)
Q Consensus       302 -------------------------~~~~i~~~~~s~~~~-------------~l~~~~~dg~i~iwd~~~~~~~~~~~~  343 (432)
                                               ..+....+...+++.             ++++++.++.|++||+.+++       
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-------  309 (360)
T d1k32a3         237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-------  309 (360)
T ss_dssp             CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-------
T ss_pred             CCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe-------
Confidence                                     001122233332222             33455567788888887765       


Q ss_pred             CCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007          344 RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV  412 (432)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~  412 (432)
                                                   .   ..|.+.|..++|||||++|++++.||.|++|+++..
T Consensus       310 -----------------------------~---~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         310 -----------------------------V---TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP  346 (360)
T ss_dssp             -----------------------------E---EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred             -----------------------------E---EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence                                         1   223345889999999999999999999999998554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-29  Score=233.47  Aligned_cols=255  Identities=11%  Similarity=0.197  Sum_probs=177.4

Q ss_pred             ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeE-----EEeecccCcceeEE------EEeee-CCeEEEe
Q 014007           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI-----FRRDFERGGGIGVV------EMLFR-CNILALV  145 (432)
Q Consensus        79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~-----~~~~~~~~~~~~v~------~~~~~-~~~~~~~  145 (432)
                      ....+|...|+++++++  ++|++++ |+.|+|||....+..     .....  .+...+.      .+... .+...++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeee--eccCCceEeeeEeeeccCCCCCcEEE
Confidence            56789999999999875  5788887 555999997544321     00111  1222211      12222 2346777


Q ss_pred             cCCCCCCCCCCeEEEEeCCCCceeEE--------ee---cCCceEEEEEecCc-----cEEE---eCCeEEEEEcCCCe-
Q 014007          146 GGGPDPQYPLNKVMIWDDHQSRCIGE--------LS---FRSEVRSVKLRRDR-----IIVV---LEQKIFVYNFADLK-  205 (432)
Q Consensus       146 s~~~d~~~~~~~v~iwd~~~~~~~~~--------~~---~~~~v~~~~~~~~~-----~~~~---~d~~i~i~d~~~~~-  205 (432)
                      +++.|     |.|++|++........        +.   +...+..+++.++.     .+++   .|+.+++|++.... 
T Consensus        84 s~~~d-----g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          84 TTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEeCC-----CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            88888     9999999765432111        11   34567788887753     3444   28999999975311 


Q ss_pred             --------------eeEEE---eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-------eeeeccCCce
Q 014007          206 --------------LLHQI---ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-------KFIMAHDSRI  261 (432)
Q Consensus       206 --------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-------~~~~~~~~~i  261 (432)
                                    .....   ..+...+.+++|+|++   ++++ |+.|+.|++||+.+...       ..+.+|...|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---~las-gs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V  234 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  234 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC---EEEE-EeCCCcEEEEeecccccccccccccccccccceE
Confidence                          00111   1223446789999986   4454 56899999999987432       2345799999


Q ss_pred             eEEEEcCCCCEEEEEcCCCc--eEEEEECCCCceEEEEEe-----------CCCcCceEEEEECCCCCEEEEEeCCCeEE
Q 014007          262 ACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVRR-----------GADRAEIYSLAFSSNAQWLAVSSDKGTVH  328 (432)
Q Consensus       262 ~~~~~sp~~~~l~~~~~dg~--~i~vwd~~~~~~~~~~~~-----------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  328 (432)
                      .+++|+|+|++|++|+.|++  .|++||+.+++++..+..           ..|...|++++|+||+++|++++.|++|+
T Consensus       235 ~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~  314 (393)
T d1sq9a_         235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  314 (393)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             EEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEE
Confidence            99999999999999998863  289999999998888752           13778999999999999999999999999


Q ss_pred             EEEecCCCCCCCCCCCCC
Q 014007          329 VFNLKVNSGSARSEPRST  346 (432)
Q Consensus       329 iwd~~~~~~~~~~~~~~~  346 (432)
                      |||+++++++..+.+|..
T Consensus       315 vWd~~~g~~~~~l~gH~~  332 (393)
T d1sq9a_         315 FWDVKTKERITTLNMHCD  332 (393)
T ss_dssp             EEETTTTEEEEEEECCGG
T ss_pred             EEECCCCCEEEEECCcCC
Confidence            999999986655544433

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.3e-30  Score=228.10  Aligned_cols=287  Identities=14%  Similarity=0.055  Sum_probs=205.1

Q ss_pred             cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeE--EEeecccCcceeEEEEeeeCC-eEEEecCCCCCCC
Q 014007           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQY  153 (432)
Q Consensus        78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~  153 (432)
                      .++...|.+.|++|+|+|++++||+|+ |+.|+|||++.....  ....+  +|...|.+++|+++ +..+++++.|   
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~--~h~~~V~~v~f~~~~~~~l~sg~~d---   78 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQ---   78 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETT---
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEec--CCCCCEEEEEEeCCCCCEEEEcccc---
Confidence            357789999999999999999999998 556999999765432  22233  48899999999875 5788999998   


Q ss_pred             CCCeEEEEeCCCCceeEEee-c-CCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEe----ec--cCCcceEEE
Q 014007          154 PLNKVMIWDDHQSRCIGELS-F-RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE----TI--ANPKGLCAV  222 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~----~~--~~~~~~~~~  222 (432)
                        +.|++|++..+....... + ........+.++...++   .++.+++||++.+.......    .+  ........+
T Consensus        79 --~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
T d1yfqa_          79 --GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             --SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred             --cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeee
Confidence              999999998887766665 3 33344455555555555   38999999987643322221    11  122334567


Q ss_pred             ecCCCcEEEEeecCCCCcEEEEEccCCce----eeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCce----
Q 014007          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRT----KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTL----  293 (432)
Q Consensus       223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~----  293 (432)
                      .+.++.++.+   +.|+.|++||++....    .....+...+.+..+.+ ++..+++++.||. +.+|+......    
T Consensus       157 ~~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~v~~~~~~~~~~~~  232 (342)
T d1yfqa_         157 DTNSSRLIVG---MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNS  232 (342)
T ss_dssp             EECSSEEEEE---ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTC
T ss_pred             eccCCceeee---cCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCe-EEEEEecCCcceeec
Confidence            7777655433   3799999999987432    22334445566655554 7788999999999 99999764321    


Q ss_pred             --EEEEEe-------CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007          294 --LQEVRR-------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP  364 (432)
Q Consensus       294 --~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (432)
                        ...+..       ..|...+++++|+|++++|++|+.||.|+|||+++++.+                          
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l--------------------------  286 (342)
T d1yfqa_         233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI--------------------------  286 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE--------------------------
T ss_pred             cccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEE--------------------------
Confidence              111111       124467899999999999999999999999999987632                          


Q ss_pred             ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                               ..+.. .+.+..++|+|++++|++++.|+.+++|....
T Consensus       287 ---------~~~~~-~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         287 ---------KNFAK-FNEDSVVKIACSDNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             ---------EECCC-CSSSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred             ---------EEecC-CCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence                     12211 23466789999999999999999988876533

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.2e-28  Score=221.25  Aligned_cols=254  Identities=15%  Similarity=0.196  Sum_probs=202.4

Q ss_pred             eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~  197 (432)
                      +++. +|...|.+++|++++.+|++|+.|     |+|++||+.+++.+..+. |...|.+++|+|++.++++   |+.++
T Consensus        49 ~tL~-GH~~~I~~l~~s~~~~~l~sgs~D-----g~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          49 RTLR-GHLAKIYAMHWGTDSRLLVSASQD-----GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             EEEC-CCSSCEEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             EEEC-CCCCCEEEEEECCCCCEEEEEECC-----CceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceee
Confidence            5666 899999999999999999999999     999999999999999998 8999999999999998884   89999


Q ss_pred             EEEcCCCe----eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCE
Q 014007          198 VYNFADLK----LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQL  272 (432)
Q Consensus       198 i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~  272 (432)
                      +|+.....    ....+..+...........+ ..+. .  ...+.....+...... ......+...+....+.+.+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIV-T--SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL  198 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEE-E--EETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccceecccccccccccccccc-cccc-c--ccccccccccccccccccccccccceeEeeeccccccce
Confidence            99976642    33444445444433333333 2222 2  2367888888777643 3445677888999999999999


Q ss_pred             EEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (432)
Q Consensus       273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (432)
                      +++++.|+. |++||+++++++..+..  |...|++++|+|++++|++|+.||.|++||+........            
T Consensus       199 ~~~~~~d~~-v~i~d~~~~~~~~~~~~--h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~------------  263 (340)
T d1tbga_         199 FVSGACDAS-AKLWDVREGMCRQTFTG--HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT------------  263 (340)
T ss_dssp             EEEEETTTE-EEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE------------
T ss_pred             eEEeecCce-EEEEECCCCcEEEEEeC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccc------------
Confidence            999999999 99999999999998885  668999999999999999999999999999987652210            


Q ss_pred             CCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYN  423 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  423 (432)
                                           .....+...|..++|+|++++|++|+.||.|++|++.  +++.+..+..|
T Consensus       264 ---------------------~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~H  311 (340)
T d1tbga_         264 ---------------------YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL--KADRAGVLAGH  311 (340)
T ss_dssp             ---------------------ECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETT--TCCEEEEECCC
T ss_pred             ---------------------cccccccCceEEEEECCCCCEEEEEECCCEEEEEECC--CCcEEEEEcCC
Confidence                                 0112344569999999999999999999999999874  45555555443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.4e-29  Score=225.20  Aligned_cols=243  Identities=13%  Similarity=0.152  Sum_probs=187.1

Q ss_pred             CCCC-CCCeEEEEEcC--CCCEEEEEc-CCcEEEEEcCCCeeE------EEeecccCcceeEEEEeeeCCeEEEecC--C
Q 014007           81 SSSP-PPTLLHISFNQ--DHGCFAAGT-DHGFRIYNCDPFREI------FRRDFERGGGIGVVEMLFRCNILALVGG--G  148 (432)
Q Consensus        81 ~~~~-~~~v~~~~~s~--~~~~l~~~~-~~~i~iw~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~s~--~  148 (432)
                      ..+| ...|++++|+|  +|.+|++|+ |+.|+|||+...+..      ....+. .+...|.+++|++++..++++  +
T Consensus        58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccc-cccCcEEEEEECCCCCccceeecc
Confidence            3455 57899999998  567999998 455999998543321      111222 467789999999998766544  4


Q ss_pred             CCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEE-E---eCCeEEEEEcCCCeeeEEEe---eccCCcceE
Q 014007          149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIV-V---LEQKIFVYNFADLKLLHQIE---TIANPKGLC  220 (432)
Q Consensus       149 ~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~  220 (432)
                      .+     +.+++|+..+++.+..+. |...|.+++|++++.++ +   .|+.|++||...++....+.   .+...+.++
T Consensus       137 ~~-----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v  211 (325)
T d1pgua1         137 RD-----NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV  211 (325)
T ss_dssp             SS-----CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred             cc-----ceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEe
Confidence            45     789999999999999988 99999999999987643 3   28999999998887766654   345668899


Q ss_pred             EEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEc---CCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALT---QDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (432)
Q Consensus       221 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~s---p~~~~l~~~~~dg~~i~vwd~~~~~~~~~  296 (432)
                      +|+|++..++ ++ ++.|+.|++||++++. +..+.+|...+.++.|+   |+|++|++++.|+. |+|||+++++++..
T Consensus       212 ~~~pd~~~~l-~s-~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~~~~~~~~  288 (325)
T d1pgua1         212 EFSPDSGEFV-IT-VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSKCVQK  288 (325)
T ss_dssp             EECSTTCCEE-EE-EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETTTTEEEEE
T ss_pred             eeccccceec-cc-cccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe-EEEEECCCCCEEEE
Confidence            9999866554 33 3479999999998854 46677888877666665   68999999999999 99999999999999


Q ss_pred             EEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEe
Q 014007          297 VRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNL  332 (432)
Q Consensus       297 ~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~  332 (432)
                      +..+.+...+..+++.+. +.+|++++.||.|++||+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         289 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            987655544444444332 347889999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.3e-27  Score=217.99  Aligned_cols=264  Identities=14%  Similarity=0.154  Sum_probs=180.5

Q ss_pred             cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-------eeEEeecCCceEEEEEe---c----CccEEE
Q 014007          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-------CIGELSFRSEVRSVKLR---R----DRIIVV  191 (432)
Q Consensus       126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-------~~~~~~~~~~v~~~~~~---~----~~~~~~  191 (432)
                      .+|...|.+++++++  .+++++.|     ++|++||..+.+       ......+...+..+...   +    ++.+++
T Consensus        11 ~~H~~~I~~v~~~~~--~l~S~S~D-----~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_          11 KAHDADIFSVSACNS--FTVSCSGD-----GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             SCSSSCEEEEEECSS--EEEEEETT-----SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             CcccCccEEEEEeCC--EEEEEECC-----CeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            489999999998764  67777888     999999976543       22222244444333221   1    123344


Q ss_pred             e---CCeEEEEEcCCCeeeEEE-----e-----eccCCcceEEEecCCC---cEEEEeecCCCCcEEEEEccCCc-----
Q 014007          192 L---EQKIFVYNFADLKLLHQI-----E-----TIANPKGLCAVSQGVG---SLVLVCPGLQKGQVRVEHYASKR-----  250 (432)
Q Consensus       192 ~---d~~i~i~d~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~i~d~~~~~-----  250 (432)
                      +   ||.|++|++........+     .     .+...+..+++.+++.   ..++++ ++.||.+++|++....     
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA-TDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE-EETTSCEEEEEEESSSSHHHH
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEE-EcCCCcEEEEEeecCCcccce
Confidence            2   899999997653221111     1     1223445567776643   223343 3479999999985411     


Q ss_pred             --------------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC----CCcCceEEEEEC
Q 014007          251 --------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG----ADRAEIYSLAFS  312 (432)
Q Consensus       251 --------------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~----~~~~~i~~~~~s  312 (432)
                                    ......+...+.+++|+|++ +|++|+.|+. |+|||+.+++++..+...    .|...|.+++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~-i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT-VQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE-EEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCc-EEEEeecccccccccccccccccccceEEEcccc
Confidence                          01122455678999999998 8999999999 999999999988877642    367899999999


Q ss_pred             CCCCEEEEEeCCC---eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEc
Q 014007          313 SNAQWLAVSSDKG---TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG  389 (432)
Q Consensus       313 ~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  389 (432)
                      |||++|++|+.|+   .|++||+++++.+....                      ...........+.+|.+.|++++|+
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~----------------------~~~~~~~~~~~~~gH~~~V~~l~fs  298 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLS----------------------VPTHSSQASLGEFAHSSWVMSLSFN  298 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC----------------------BC--------CCBSBSSCEEEEEEC
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeec----------------------cccccccceeeeecccCceeeeccC
Confidence            9999999999887   49999999887432211                      0000111122356799999999999


Q ss_pred             cCCCEEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007          390 HQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYN  423 (432)
Q Consensus       390 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  423 (432)
                      ||+++|++|+.||+|++|++.  +|+.+..++.|
T Consensus       299 pd~~~l~S~s~D~~v~vWd~~--~g~~~~~l~gH  330 (393)
T d1sq9a_         299 DSGETLCSAGWDGKLRFWDVK--TKERITTLNMH  330 (393)
T ss_dssp             SSSSEEEEEETTSEEEEEETT--TTEEEEEEECC
T ss_pred             CCCCeeEEECCCCEEEEEECC--CCCEEEEECCc
Confidence            999999999999999999984  45666666654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8e-27  Score=210.18  Aligned_cols=236  Identities=16%  Similarity=0.231  Sum_probs=173.8

Q ss_pred             eecccCcceeE-EEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE--eCCeEE
Q 014007          122 RDFERGGGIGV-VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIF  197 (432)
Q Consensus       122 ~~~~~~~~~~v-~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~  197 (432)
                      .+++ +|...| .++.++  +.+|++|+.|     ++|++||+.+++++.++. |.+.|.+++|++++.++.  .|+.|+
T Consensus         6 ~tL~-GH~~~vitc~~~~--~~~l~tgs~D-----g~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~   77 (355)
T d1nexb2           6 TTLR-GHMTSVITCLQFE--DNYVITGADD-----KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR   77 (355)
T ss_dssp             EEEE-CCSSSCEEEEEEE--TTEEEEEETT-----TEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEE
T ss_pred             EEEC-CcCCCcEEEEEEC--CCEEEEEeCC-----CeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccc
Confidence            4565 676665 455554  5688999999     999999999999999999 999999999999876555  399999


Q ss_pred             EEEcCCCeeeEEEeeccCCcce--EEEecCCCcEEEEeecCCCCcEEEEEcc----------------------------
Q 014007          198 VYNFADLKLLHQIETIANPKGL--CAVSQGVGSLVLVCPGLQKGQVRVEHYA----------------------------  247 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~d~~i~i~d~~----------------------------  247 (432)
                      +|++...+..............  ..+.+++.  ++++ ++.|+.|++||++                            
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK--YIVT-GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEE--EEEE-EETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             cccccccccccccccccccccccccccccccc--eeee-ecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            9999887766554433332222  22233322  2222 2355666666554                            


Q ss_pred             -----------------------------------CCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC
Q 014007          248 -----------------------------------SKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (432)
Q Consensus       248 -----------------------------------~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~  291 (432)
                                                         +.. +....++...+.++.|+|++.++++++.|+. |++||++++
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~  233 (355)
T d1nexb2         155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENG  233 (355)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTTC
T ss_pred             eeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccce-EEeeecccc
Confidence                                               321 2233456677889999999999999999999 999999999


Q ss_pred             ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW  371 (432)
Q Consensus       292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (432)
                      .++..+..  |...|.+++|++  ++|++++.||.|++||+++...                                  
T Consensus       234 ~~~~~~~~--h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~----------------------------------  275 (355)
T d1nexb2         234 ELMYTLQG--HTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR----------------------------------  275 (355)
T ss_dssp             CEEEEECC--CSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE----------------------------------
T ss_pred             cccccccc--cccccccccccc--ceeeeeecccccccccccccce----------------------------------
Confidence            99998885  668899999964  7999999999999999987641                                  


Q ss_pred             eeEEEEecCCCceEE-EEccCCCEEEEEecCCeEEEEEecC
Q 014007          372 SVAQFRLVEGSPYIV-AFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       372 ~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                         .+..|...+..+ .|++++++|++| .||.|++|++..
T Consensus       276 ---~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~t  312 (355)
T d1nexb2         276 ---KFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRS  312 (355)
T ss_dssp             ---EEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTT
T ss_pred             ---ecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCC
Confidence               245566666655 456677766655 599999999743

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=6.6e-24  Score=186.82  Aligned_cols=264  Identities=14%  Similarity=0.107  Sum_probs=204.9

Q ss_pred             CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEE
Q 014007          105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKL  183 (432)
Q Consensus       105 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~  183 (432)
                      +++|.+||+++++..  ..+.  .......++++|++..+ +++..+     +.|++||+.+++.+..+.....+..+.+
T Consensus        11 ~~~v~v~D~~t~~~~--~~i~--~g~~p~~va~spdG~~l~v~~~~~-----~~i~v~d~~t~~~~~~~~~~~~~~~~~~   81 (301)
T d1l0qa2          11 SDNISVIDVTSNKVT--ATIP--VGSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAGSSPQGVAV   81 (301)
T ss_dssp             TTEEEEEETTTTEEE--EEEE--CSSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             CCEEEEEECCCCeEE--EEEE--CCCCceEEEEeCCCCEEEEEECCC-----CEEEEEECCCCceeeeeecccccccccc
Confidence            556999999998766  4454  33456789999998765 566666     8999999999999999986667899999


Q ss_pred             ecCccEEEe----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCC
Q 014007          184 RRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDS  259 (432)
Q Consensus       184 ~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~  259 (432)
                      ++++..++.    ++.+.+|+..+++....+..+. ....+.+++++..+++.  +..++.+.+|+..+........+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  158 (301)
T d1l0qa2          82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVT--NNGDKTVSVINTVTKAVINTVSVGR  158 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEE--ETTTTEEEEEETTTTEEEEEEECCS
T ss_pred             ccccccccccccccceeeecccccceeeeeccccc-cceEEEeecCCCeeeee--eccccceeeeeccccceeeecccCC
Confidence            999987662    6789999999998888886544 45689999999877654  3578899999999877666556667


Q ss_pred             ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe---CCCeEEEEEecCCC
Q 014007          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNS  336 (432)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~  336 (432)
                      .+..++++|++..+++++.+...+.+|+....+....+.   ....+..++|++++..++.+.   .++.|++||+.+++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~  235 (301)
T d1l0qa2         159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             CceEEEeeccccceeeecccccccccccccceeeeeccc---ccCCcceeeccccccccccccccceeeeeeeeecCCCe
Confidence            789999999999888887765437888887777777776   336788999999999887654   34689999998876


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEE-EEEecCCeEEEEEecCCCCC
Q 014007          337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTV-VILGMDGSFYRCQFDPVNGG  415 (432)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~  415 (432)
                      .                                   +..+.. ...+..++|+|||++| ++++.||.|++|++  ++++
T Consensus       236 ~-----------------------------------~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~--~t~~  277 (301)
T d1l0qa2         236 I-----------------------------------TARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDT--ATNT  277 (301)
T ss_dssp             E-----------------------------------EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEET--TTTE
T ss_pred             E-----------------------------------EEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEEC--CCCe
Confidence            2                                   122332 3458899999999987 56677999999876  4555


Q ss_pred             cceEee
Q 014007          416 EMTQLE  421 (432)
Q Consensus       416 ~~~~~~  421 (432)
                      .+..++
T Consensus       278 ~~~~~~  283 (301)
T d1l0qa2         278 ITATMA  283 (301)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8e-25  Score=195.84  Aligned_cols=249  Identities=15%  Similarity=0.261  Sum_probs=175.8

Q ss_pred             EEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccE
Q 014007          111 YNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII  189 (432)
Q Consensus       111 w~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  189 (432)
                      |+..+.+..  +.++ +|...|.+ ++++++.+|++|+.|     |+|+|||+.+++++.++. |...|.+++|+++  +
T Consensus         1 W~~~~~~~~--~~l~-GH~~~V~s-~~~~~g~~l~sgs~D-----g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~   69 (342)
T d2ovrb2           1 WRRGELKSP--KVLK-GHDDHVIT-CLQFCGNRIVSGSDD-----NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--I   69 (342)
T ss_dssp             HHHSCCCCC--EEEE-CSTTSCEE-EEEEETTEEEEEETT-----SCEEEEETTTCCEEEECCCCSSCEEEEEEETT--E
T ss_pred             CCCCCCCcC--EEEC-CcCCceEE-EEEECCCEEEEEeCC-----CeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--c
Confidence            343344333  5566 78887765 345556789999999     999999999999999998 9999999999986  3


Q ss_pred             EE---eCCeEEEEEcCCCeeeEEEeeccCCcc--------------------------------------eEEEecCCCc
Q 014007          190 VV---LEQKIFVYNFADLKLLHQIETIANPKG--------------------------------------LCAVSQGVGS  228 (432)
Q Consensus       190 ~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~  228 (432)
                      ++   .|+.+++|+................+.                                      ..........
T Consensus        70 l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
T d2ovrb2          70 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR  149 (342)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSC
T ss_pred             cccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccce
Confidence            33   288999999876544332221111110                                      1112222222


Q ss_pred             EEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       229 ~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      ++.   ++.|+.|++||..... ...+.+|...+..+.  +++.+|++++.||. |++||++.++++..+..  |...+.
T Consensus       150 ~~~---~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~-i~~~d~~~~~~~~~~~~--~~~~v~  221 (342)
T d2ovrb2         150 VVS---GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTS-IRVWDVETGNCIHTLTG--HQSLTS  221 (342)
T ss_dssp             EEE---EETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSC-EEEEETTTCCEEEEECC--CCSCEE
T ss_pred             eee---ecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCe-EEEeecccceeeeEecc--ccccee
Confidence            222   3478999999988744 455677777666655  47889999999999 99999999999988875  567888


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe---cCCCce
Q 014007          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL---VEGSPY  384 (432)
Q Consensus       308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~  384 (432)
                      ++++++  ++|++++.||.|++||+...+..                                   ..+..   |...+.
T Consensus       222 ~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~  264 (342)
T d2ovrb2         222 GMELKD--NILVSGNADSTVKIWDIKTGQCL-----------------------------------QTLQGPNKHQSAVT  264 (342)
T ss_dssp             EEEEET--TEEEEEETTSCEEEEETTTCCEE-----------------------------------EEECSTTSCSSCEE
T ss_pred             EEecCC--CEEEEEcCCCEEEEEeccccccc-----------------------------------ccccccceeeecee
Confidence            887754  69999999999999999887621                                   11222   333444


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEEecCCCCCcceE
Q 014007          385 IVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQ  419 (432)
Q Consensus       385 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~  419 (432)
                      ++.  ++++++++|+.||.|++|++.  +|+.+..
T Consensus       265 ~~~--~~~~~~~s~s~Dg~i~iwd~~--tg~~i~~  295 (342)
T d2ovrb2         265 CLQ--FNKNFVITSSDDGTVKLWDLK--TGEFIRN  295 (342)
T ss_dssp             EEE--ECSSEEEEEETTSEEEEEETT--TCCEEEE
T ss_pred             ecc--cCCCeeEEEcCCCEEEEEECC--CCCEEEE
Confidence            444  466799999999999999874  3444433

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.4e-25  Score=196.18  Aligned_cols=258  Identities=10%  Similarity=0.064  Sum_probs=179.3

Q ss_pred             cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce----eEEeecCCceEEEEEecCc-cEEEe---CCeEE
Q 014007          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC----IGELSFRSEVRSVKLRRDR-IIVVL---EQKIF  197 (432)
Q Consensus       126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~-~~~~~---d~~i~  197 (432)
                      .+|...|.+++|+|++.+|++++.|     ++|+|||+.++..    ...+.|..+|.+++|++++ .++++   |+.|+
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~D-----g~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECC-----CeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            4899999999999999999999999     9999999876543    3334589999999999864 45553   89999


Q ss_pred             EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-----eeec--cCCceeEEEEcCCC
Q 014007          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-----FIMA--HDSRIACFALTQDG  270 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-----~~~~--~~~~i~~~~~sp~~  270 (432)
                      +|++...........+........+.+.+...++.  ++.++.+++||++.....     ....  .......+.+.+++
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIA--ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEE--EETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeecccccccccccccccccccccccccccccccc--cccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            99998877666665555544444444444444333  247999999998763211     1111  23345566778889


Q ss_pred             CEEEEEcCCCceEEEEECCCCceEEEEEe-CCCcCceEEEEE-CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCC
Q 014007          271 QLLATSSTKGTLVRIFNTLDGTLLQEVRR-GADRAEIYSLAF-SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSD  348 (432)
Q Consensus       271 ~~l~~~~~dg~~i~vwd~~~~~~~~~~~~-~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  348 (432)
                      ..+++++.|+. |++||+...+....... ......+.+..+ ..++..+++++.||.+.+|+............     
T Consensus       161 ~~~~~~~~d~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~-----  234 (342)
T d1yfqa_         161 SRLIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK-----  234 (342)
T ss_dssp             SEEEEEESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT-----
T ss_pred             CceeeecCCCc-EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccc-----
Confidence            99999999999 99999987764433221 113344555554 45678999999999999999987653321100     


Q ss_pred             CCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          349 PTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                             ......        .........|...|++++|+|++++|++|+.||.|++|+++.
T Consensus       235 -------~~~~~~--------~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         235 -------RFAFRC--------HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             -------CEEEEC--------CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             -------cceeee--------eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC
Confidence                   000000        000001224556789999999999999999999999999854

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=8.5e-25  Score=202.85  Aligned_cols=288  Identities=12%  Similarity=0.049  Sum_probs=193.1

Q ss_pred             EEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEE--ee--
Q 014007           99 CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--LS--  173 (432)
Q Consensus        99 ~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~--~~--  173 (432)
                      ++++..+++ |+|||+.+++.+  ..+. .+ ..+..++|+||+..+++++.|     ++|++||+.+++....  +.  
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~--~~l~-~g-~~~~~vafSPDGk~l~~~~~d-----~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIV--KVID-TG-YAVHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEE--EEEE-CC-SSEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEEEEEEECC
T ss_pred             EEEEEcCCCEEEEEECCCCcEE--EEEe-CC-CCeeEEEECCCCCEEEEEeCC-----CCEEEEEccCCceeEEEEEeCC
Confidence            445666544 999999998876  5565 23 458899999999999999988     9999999998875443  33  


Q ss_pred             --cCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee---------cCCC
Q 014007          174 --FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP---------GLQK  238 (432)
Q Consensus       174 --~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~d  238 (432)
                        |.+.+.+++|+|||++++    .++.+++||..+++++..+..+...+....+.+++...+++.+         ....
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence              334455666778998875    2789999999999888887766555544455554443333221         1123


Q ss_pred             CcEEEEEccCCc--eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceE----------------------
Q 014007          239 GQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL----------------------  294 (432)
Q Consensus       239 ~~i~i~d~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~----------------------  294 (432)
                      +.+.+++.....  ......+...+..+.|+|++++++++..+...+.+++..+++.+                      
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (426)
T d1hzua2         185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY  264 (426)
T ss_dssp             TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT
T ss_pred             CeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCC
Confidence            444444444322  22334677889999999999988877654443667766544433                      


Q ss_pred             --------------------------------EEEEeCCCcCceEEEEECCCCCEEEE-------EeCCCeEEEEEecCC
Q 014007          295 --------------------------------QEVRRGADRAEIYSLAFSSNAQWLAV-------SSDKGTVHVFNLKVN  335 (432)
Q Consensus       295 --------------------------------~~~~~~~~~~~i~~~~~s~~~~~l~~-------~~~dg~i~iwd~~~~  335 (432)
                                                      ..+.+  |...+..++|+||+++|++       ++.+++|+|||+.++
T Consensus       265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g--~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL  342 (426)
T ss_dssp             EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC--SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             CceEEeccCCCceEEEeeccccccccccceEeEEEec--CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCC
Confidence                                            23332  4456888999999999994       456889999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE-----ecCCeEEEEEec
Q 014007          336 SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL-----GMDGSFYRCQFD  410 (432)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-----~~dg~v~iw~~~  410 (432)
                      +.....                     .+     ......+..|...|..++|||||++|+++     +.+|.|.||+. 
T Consensus       343 ~~~~~~---------------------~~-----~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~-  395 (426)
T d1hzua2         343 DAKYQV---------------------LP-----IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD-  395 (426)
T ss_dssp             TSCCEE---------------------EC-----HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET-
T ss_pred             CcCeEE---------------------ec-----cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEEC-
Confidence            743211                     00     00000122345678899999999977543     35889999875 


Q ss_pred             CCCCCcceEeeeccc
Q 014007          411 PVNGGEMTQLEYNNF  425 (432)
Q Consensus       411 ~~~~~~~~~~~~~~~  425 (432)
                       .+++....++...+
T Consensus       396 -~T~k~~~~i~~~~~  409 (426)
T d1hzua2         396 -KTLKLKAVVKDPRL  409 (426)
T ss_dssp             -TTTEEEEEECCTTC
T ss_pred             -CCCeEEEEECCCCc
Confidence             55666666665543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.3e-24  Score=187.80  Aligned_cols=227  Identities=13%  Similarity=0.182  Sum_probs=173.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        81 ~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i  160 (432)
                      ...|...|.++.|++++.++..+.|+.+++|++...      .    ....+..+.+.+++..++.+..      +.+.+
T Consensus        42 ~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~  105 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH------E----FGSQPKVASANNDGFTAVLTND------DDLLI  105 (287)
T ss_dssp             ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE------E----CSSCEEEEEECSSSEEEEEETT------SEEEE
T ss_pred             CCCCCCCEEEEEecCCCeEEEEeecccccccccccc------c----cccceeeeeeccCCceEEEeec------cccee
Confidence            457999999999998876655555888999986421      1    2233556777888888777665      67899


Q ss_pred             EeCCCCceeEEeecCCceEEEEEecCccEEE--e--CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeec
Q 014007          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L--EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPG  235 (432)
Q Consensus       161 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~--d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g  235 (432)
                      |+..+++.+..+.....+.+  +++++..++  .  ++.+++|++...+....+. .+...+.+++|+|++..++.   |
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~---g  180 (287)
T d1pgua2         106 LQSFTGDIIKSVRLNSPGSA--VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA---G  180 (287)
T ss_dssp             EETTTCCEEEEEECSSCEEE--EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE---E
T ss_pred             eeccceeeeeeccccceeee--eeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccc---c
Confidence            99999999888886666654  455555444  2  3579999987766555443 35667889999999985543   3


Q ss_pred             CCCCcEEEEEccCCcee--eeeccCCceeEEEEcCC----------CCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCC
Q 014007          236 LQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQD----------GQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGAD  302 (432)
Q Consensus       236 ~~d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~sp~----------~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~  302 (432)
                      +.||.|++||+......  .+..|...|.+++|+|.          +.+|++|+.|+. |++||++++ +.+..+.  .|
T Consensus       181 ~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~~~~~~~~~--~h  257 (287)
T d1pgua2         181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKALN--AH  257 (287)
T ss_dssp             ETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEEETT--SS
T ss_pred             cccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCCCeEEEEeC--CC
Confidence            48999999999886543  45789999999999874          468999999999 999999774 4444443  37


Q ss_pred             cCceEEEEECCCCCEEEEEeCCCeEEEEEe
Q 014007          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (432)
Q Consensus       303 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  332 (432)
                      ...|++++|+|++ .|++++.||.|++|++
T Consensus       258 ~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         258 KDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            7899999999986 5888999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=9.9e-24  Score=190.57  Aligned_cols=238  Identities=14%  Similarity=0.108  Sum_probs=178.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCc--EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~-~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v  158 (432)
                      ..|...|.+++|+|||++|++++ +++  |++|+.++++..  . +. .|...+..++|+|++..+++++.+     +.+
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~--~-~~-~~~~~v~~~~~spdg~~l~~~~~~-----~~~  109 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE--K-FE-ENLGNVFAMGVDRNGKFAVVANDR-----FEI  109 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE--E-CC-CCCCSEEEEEECTTSSEEEEEETT-----SEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE--E-ee-CCCceEEeeeecccccccceeccc-----ccc
Confidence            36889999999999999987665 543  999999876644  2 33 588899999999999999999998     999


Q ss_pred             EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe-------------CCeEEEEEcCCCeeeEEEeeccCCcceEEEec
Q 014007          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (432)
                      ++|++.+++....+. +...+.+++|+|+|++++.             ++.+++||+.+++..... .+...+..++|+|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~sp  188 (360)
T d1k32a3         110 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA  188 (360)
T ss_dssp             EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECT
T ss_pred             ccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccC
Confidence            999999999888887 8889999999999998872             346999999887765443 4556667889999


Q ss_pred             CCCcEEEEeecCCCCcEEEEEccCCc--------eeeeec------------------------------------cCCc
Q 014007          225 GVGSLVLVCPGLQKGQVRVEHYASKR--------TKFIMA------------------------------------HDSR  260 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i~d~~~~~--------~~~~~~------------------------------------~~~~  260 (432)
                      +|+.+++.+   .++.+.+||.....        ...+..                                    ..+.
T Consensus       189 dg~~l~~~s---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (360)
T d1k32a3         189 DSKNLYYLS---YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD  265 (360)
T ss_dssp             TSCEEEEEE---SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC
T ss_pred             CCCEEEEEe---CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCc
Confidence            998765443   67888888754311        000000                                    1112


Q ss_pred             eeEEEEcCCC-------------CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeE
Q 014007          261 IACFALTQDG-------------QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV  327 (432)
Q Consensus       261 i~~~~~sp~~-------------~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  327 (432)
                      ...+...+++             .++++++.++. |++||+.+++.. .+.     ..|.+++|||||++|++++.||.|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~-~~~-----~~v~~~~~SpDG~~l~~~~~Dg~i  338 (360)
T d1k32a3         266 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTRKVT-EVK-----NNLTDLRLSADRKTVMVRKDDGKI  338 (360)
T ss_dssp             EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEE-EEEEETTTCCEE-EEE-----EEEEEEEECTTSCEEEEEETTSCE
T ss_pred             eeEeeecCCCceEEEEEecCCCeeEEEecCCCCE-EEEEECCCCeEE-Eec-----CCcCEEEECCCCCEEEEEECCCeE
Confidence            2233333322             23445566777 999999887653 222     458999999999999999999999


Q ss_pred             EEEEecCCCCCC
Q 014007          328 HVFNLKVNSGSA  339 (432)
Q Consensus       328 ~iwd~~~~~~~~  339 (432)
                      ++||+++++...
T Consensus       339 ~v~d~~~~~~~~  350 (360)
T d1k32a3         339 YTFPLEKPEDER  350 (360)
T ss_dssp             EEEESSCTTSCE
T ss_pred             EEEECCCCCcce
Confidence            999999987543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-22  Score=176.19  Aligned_cols=227  Identities=15%  Similarity=0.281  Sum_probs=176.6

Q ss_pred             CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA  202 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~  202 (432)
                      .+...|.++.|  ++..|++|+.|     |+|+|||+.+++++.++. |...|.+++|  ++.++++   |+.|++|++.
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs~D-----g~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGLRD-----NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESS-----SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             CCCCCEEEEEE--cCCEEEEEeCC-----CeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            57788888766  57789999999     999999999999999999 9999999887  4556663   8999999999


Q ss_pred             CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSST  278 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (432)
                      .+...........  ...........++.+   ..++.+.+|+.....    ...+..|...+..+.+.+  ..+++++.
T Consensus        84 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~  156 (293)
T d1p22a2          84 TGEMLNTLIHHCE--AVLHLRFNNGMMVTC---SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG  156 (293)
T ss_dssp             SCCEEEEECCCCS--CEEEEECCTTEEEEE---ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEET
T ss_pred             ccccccccccccc--ccccccccccceeec---ccccceeEeeccccccccccccccccccccccceecc--cccccccC
Confidence            8877666543332  234444554444322   378999999998743    334567888888887754  56889999


Q ss_pred             CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF  358 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (432)
                      |+. |++||+++++.+..+..  +...+..+.++  +.+|++++.||.|++||+++.+.                     
T Consensus       157 d~~-i~~~d~~~~~~~~~~~~--~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---------------------  210 (293)
T d1p22a2         157 DRT-IKVWNTSTCEFVRTLNG--HKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC---------------------  210 (293)
T ss_dssp             TSE-EEEEETTTCCEEEEEEC--CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE---------------------
T ss_pred             CCc-eeeecCCCCcEEEEEcc--cccccccccCC--CCeEEEecCCCEEEEEeccccee---------------------
Confidence            999 99999999999999885  45678777775  57899999999999999988762                     


Q ss_pred             EeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                                    +.....|...+.  .+++++++|++|+.||.|++|++..
T Consensus       211 --------------~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         211 --------------LRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             --------------EEEECCCSSCEE--EEECCSSEEEEEETTSCEEEEEHHH
T ss_pred             --------------eeeecccceeee--eccccceEEEEEcCCCEEEEEECCC
Confidence                          223445555554  4667889999999999999999753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=1.6e-21  Score=171.35  Aligned_cols=236  Identities=11%  Similarity=0.072  Sum_probs=188.1

Q ss_pred             CCeEEEEEcCCCCEEEE-Ec-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEE-EecCCCCCCCCCCeEEEEe
Q 014007           86 PTLLHISFNQDHGCFAA-GT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA-LVGGGPDPQYPLNKVMIWD  162 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~-~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~s~~~d~~~~~~~v~iwd  162 (432)
                      ..+..++|+|||++|++ +. ++.|++||+.+.+..  ..+.  .......+.+++++.. ++++..+     +.+.+|+
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  102 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--ATVP--AGSSPQGVAVSPDGKQVYVTNMAS-----STLSVID  102 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--EEEE--CSSSEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee--eeee--cccccccccccccccccccccccc-----ceeeecc
Confidence            45789999999998754 44 455999999988766  4444  2335678888888764 4555556     8999999


Q ss_pred             CCCCceeEEeecCCceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC
Q 014007          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (432)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (432)
                      ..+++....+.+.....++.+++++..++.    ++.+.+|+..+++.+..+..+ .....+.+++++..++++.  ..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~  179 (301)
T d1l0qa2         103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVAN--FDS  179 (301)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEE--TTT
T ss_pred             cccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeec--ccc
Confidence            999999999998888899999999987762    778999999999888877654 3456789999998776654  356


Q ss_pred             CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC---CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC
Q 014007          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (432)
Q Consensus       239 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  315 (432)
                      +.+.+|+...............+..++|+++++.+++++.   ++. |++||+.+++.+..+..   ...+.+++|+|||
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~-v~v~D~~t~~~~~~~~~---~~~~~~va~spdg  255 (301)
T d1l0qa2         180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPV---GPDPAGIAVTPDG  255 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEEC---CSSEEEEEECTTS
T ss_pred             cccccccccceeeeecccccCCcceeeccccccccccccccceeee-eeeeecCCCeEEEEEcC---CCCEEEEEEeCCC
Confidence            7888888887766666666677889999999998876543   467 99999999999988874   3568999999999


Q ss_pred             CEE-EEEeCCCeEEEEEecCCCC
Q 014007          316 QWL-AVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       316 ~~l-~~~~~dg~i~iwd~~~~~~  337 (432)
                      ++| ++++.+++|++||+.+++.
T Consensus       256 ~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         256 KKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEE
T ss_pred             CEEEEEECCCCeEEEEECCCCeE
Confidence            987 5667899999999999874

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=3.1e-22  Score=178.75  Aligned_cols=270  Identities=11%  Similarity=0.020  Sum_probs=192.2

Q ss_pred             CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEeCCCCceeEEee-c
Q 014007           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELS-F  174 (432)
Q Consensus        98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~  174 (432)
                      ++|++++ ++.|+|||+.+.+........ .+...+..++++|++..+ +++..+     +.|.+||+.+++.+..+. +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~-~~~~~~~~i~~spDg~~l~v~~~~~-----~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT-TCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECC-CCCCCccEEEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecC
Confidence            4677777 667999999998876443332 344567789999998765 566677     999999999999988876 2


Q ss_pred             -----CCceEEEEEecCccEEEe---------------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          175 -----RSEVRSVKLRRDRIIVVL---------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       175 -----~~~v~~~~~~~~~~~~~~---------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                           ...+..++|+|++.+++.               +..+.+||..+++....+... ..+..++++++++.++++  
T Consensus        76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--  152 (337)
T d1pbyb_          76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL--  152 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE--
T ss_pred             CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEE--
Confidence                 234567899999987762               457999999999988888654 456789999999987653  


Q ss_pred             cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCC------------------------CEEEEEcCCCceEEEEECCC
Q 014007          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG------------------------QLLATSSTKGTLVRIFNTLD  290 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~------------------------~~l~~~~~dg~~i~vwd~~~  290 (432)
                         ++.+.+||...........+........++|++                        ..+..+..++. +.+||..+
T Consensus       153 ---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  228 (337)
T d1pbyb_         153 ---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG-LLTMDLET  228 (337)
T ss_dssp             ---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE-EEEEETTT
T ss_pred             ---cCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCcc-EEEEEcCC
Confidence               255788998875443322211111111122221                        11222333455 89999999


Q ss_pred             CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecc
Q 014007          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSE  370 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (432)
                      ++.......+ +...+..+.+++++.+++.+  ++.|++||+.+++.+                                
T Consensus       229 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~--------------------------------  273 (337)
T d1pbyb_         229 GEMAMREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI--------------------------------  273 (337)
T ss_dssp             CCEEEEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE--------------------------------
T ss_pred             CcEEEEEecC-CCcceEEEEecccceEEEEc--cccEEEEECCCCcEE--------------------------------
Confidence            8876544332 55778899999999998776  588999999988732                                


Q ss_pred             eeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          371 WSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       371 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                         ..+ .+.+.+.+++|+|||++|++++.||.|++|+.  .+++++..++
T Consensus       274 ---~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~--~t~~~v~~i~  318 (337)
T d1pbyb_         274 ---KRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA--ETLEKKGQVD  318 (337)
T ss_dssp             ---EEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEET--TTCCEEEEEE
T ss_pred             ---EEE-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC--CCCcEEEEEE
Confidence               122 34567899999999999999999999999887  4456555554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=6.3e-23  Score=184.04  Aligned_cols=277  Identities=9%  Similarity=-0.022  Sum_probs=193.9

Q ss_pred             EEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEeCCCCce
Q 014007           91 ISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRC  168 (432)
Q Consensus        91 ~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd~~~~~~  168 (432)
                      ++|++++++|++++ ++.|.+||+++++......+  .+......+.|+||+..+ +++..+     +.|++||+.+++.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~--~~~~~p~~l~~spDG~~l~v~~~~~-----~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc--CCCCCcceEEECCCCCEEEEEECCC-----CcEEEEeCccCee
Confidence            47899999999998 55599999999887644444  356667899999998765 666677     9999999999998


Q ss_pred             eEEeecC-------CceEEEEEecCccEEEe---------------CCeEEEEEcCCCeeeEEEeec--cCCcceEEEec
Q 014007          169 IGELSFR-------SEVRSVKLRRDRIIVVL---------------EQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQ  224 (432)
Q Consensus       169 ~~~~~~~-------~~v~~~~~~~~~~~~~~---------------d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~  224 (432)
                      +..+...       ..+..++|+|||++++.               ++.+.+|+..+++....+..+  ...+..+.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            8877622       24568899999987752               567899998887665444333  23444556666


Q ss_pred             CCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCE--------------------------EEEEcC
Q 014007          225 GVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQL--------------------------LATSST  278 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~--------------------------l~~~~~  278 (432)
                      ++. ++ +.    ++.+.+|+..+...............+.++|++..                          ++++..
T Consensus       155 ~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (346)
T d1jmxb_         155 DGS-LY-VA----GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  228 (346)
T ss_dssp             TSC-EE-EE----SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             CCE-EE-Ee----CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccC
Confidence            554 33 22    35688999877544332222233334444444432                          333444


Q ss_pred             CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF  358 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (432)
                      +.. +.+||+.++......... +...+..+.+++++.+++... ++.|++||..+++.+                    
T Consensus       229 ~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~--------------------  285 (346)
T d1jmxb_         229 LYG-YLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLI--------------------  285 (346)
T ss_dssp             EEE-EEEEETTTCCEEEEEEEE-CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEE--------------------
T ss_pred             Cce-EEEEECCCCceEEEEeec-ccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEE--------------------
Confidence            555 888999888876655433 557889999999988887765 467999999887621                    


Q ss_pred             EeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                                     ..+ .+...+.+++|+|||++|++++.||.|++|+.  ++++.+..++
T Consensus       286 ---------------~~~-~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~--~t~~~i~~i~  330 (346)
T d1jmxb_         286 ---------------KAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP--DTLEKVKNIK  330 (346)
T ss_dssp             ---------------EEE-ECSSCCCEEEECSSSSCEEEESBSSEEEEEET--TTTEEEEEEE
T ss_pred             ---------------EEE-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC--ccCCEEEEEE
Confidence                           122 23456899999999999999999999999877  4556555544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=8.6e-22  Score=182.22  Aligned_cols=314  Identities=11%  Similarity=0.033  Sum_probs=195.7

Q ss_pred             EEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce--eEEee--
Q 014007           99 CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC--IGELS--  173 (432)
Q Consensus        99 ~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~--~~~~~--  173 (432)
                      ++++.++.+ |.|||.++++..  ..+. .+ ..+..++|+||+.++++++.|     +.|++||+.+++.  +.++.  
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~--~~~~-~g-~~~~~v~fSpDG~~l~~~s~d-----g~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIK--TVLD-TG-YAVHISRLSASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEE--EEEE-CS-SCEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCCEEEEEECC
T ss_pred             EEEEEcCCCEEEEEECCCCcEE--EEEe-CC-CCeeEEEECCCCCEEEEEcCC-----CCEEEEEeeCCCceEEEEEecC
Confidence            346666555 999999998877  5554 23 468899999999999999888     9999999988763  34444  


Q ss_pred             --cCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEEEeeccCC-----------cceEEEecCCCcEEEEeecC
Q 014007          174 --FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANP-----------KGLCAVSQGVGSLVLVCPGL  236 (432)
Q Consensus       174 --~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~  236 (432)
                        +.+.+.+..|+|||++++    .++.|++||..+++.+..+..+...           ...+.+++++..++++.  .
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~--~  182 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV--K  182 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE--T
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE--c
Confidence              333445556678998765    2889999999999988877654332           23467788887665543  4


Q ss_pred             CCCcEEEEEccCCce-ee-eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC---CcCceEEEEE
Q 014007          237 QKGQVRVEHYASKRT-KF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA---DRAEIYSLAF  311 (432)
Q Consensus       237 ~d~~i~i~d~~~~~~-~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~---~~~~i~~~~~  311 (432)
                      .++.|.+||...... .. ...+...+..++|+|+|+++++++.++..|.++|..+++.+..+..+.   +........+
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~  262 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH  262 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred             cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceec
Confidence            689999999877443 22 224567789999999999888877665449999998888777665421   2233344444


Q ss_pred             CCCCCEEEEEe-CCCeEEEEEecCCCCCCC-------CCCCC-CCCC--CCCCCCceeEee-------------cccc--
Q 014007          312 SSNAQWLAVSS-DKGTVHVFNLKVNSGSAR-------SEPRS-TSDP--TLPTSSLSFIKG-------------VLPK--  365 (432)
Q Consensus       312 s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-------~~~~~-~~~~--~~~~~~~~~~~~-------------~~~~--  365 (432)
                      ...+...++.. .++.|.+|+.........       ...+. ....  ..+.. ...+..             ..+.  
T Consensus       263 ~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~-~~lw~~~~~~~~~~~~~sv~vpDg~  341 (432)
T d1qksa2         263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIK  341 (432)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred             CCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCc-cceeecccCCCCCCeeeEEEEEech
Confidence            44444444433 356666666554332110       00000 0000  11111 001000             0000  


Q ss_pred             ---e-----eecceeeE---EEEecCCCceEEEEccCCCEEEEEe-----cCCeEEEEEecCCCCCcceEeeecccC
Q 014007          366 ---Y-----FSSEWSVA---QFRLVEGSPYIVAFGHQKNTVVILG-----MDGSFYRCQFDPVNGGEMTQLEYNNFL  426 (432)
Q Consensus       366 ---~-----~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~  426 (432)
                         .     ..+.|.+.   .+..|...|..++|||||++|+++.     .+|.|.||+  ..++++...++...+.
T Consensus       342 ~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D--~~T~k~~~~i~~~~~~  416 (432)
T d1qksa2         342 AMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD--DKTLELKHVIKDERLV  416 (432)
T ss_dssp             GCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE--TTTTEEEEEECCTTCC
T ss_pred             hhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE--CCCceEEeEecCCCcc
Confidence               0     00011110   1223556788999999999886554     478999976  4666766666655444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=1.2e-21  Score=181.41  Aligned_cols=246  Identities=9%  Similarity=-0.018  Sum_probs=173.8

Q ss_pred             CCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecc--cCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEE
Q 014007           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIW  161 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iw  161 (432)
                      ..+..++|||||++|++++ |+.|++||+++.+......+.  .+|...+.++.|+|++..+ +++..+     +.+++|
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~-----~~v~i~  136 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP-----PQFAIM  136 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES-----SEEEEE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC-----CeEEEE
Confidence            4699999999999999887 556999999888755433332  2456667788889998875 444455     899999


Q ss_pred             eCCCCceeEEee--------------------------------------------------------cCCceEEEEEec
Q 014007          162 DDHQSRCIGELS--------------------------------------------------------FRSEVRSVKLRR  185 (432)
Q Consensus       162 d~~~~~~~~~~~--------------------------------------------------------~~~~v~~~~~~~  185 (432)
                      |..+++++..+.                                                        +...+..+.++|
T Consensus       137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (426)
T d1hzua2         137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS  216 (426)
T ss_dssp             ETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT
T ss_pred             cCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC
Confidence            987765443221                                                        122234566666


Q ss_pred             CccEEEe----CCeEEEEEcCCCeeeEEEeecc--CCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--------Cce
Q 014007          186 DRIIVVL----EQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--------KRT  251 (432)
Q Consensus       186 ~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--------~~~  251 (432)
                      +++++..    ++.+.+++..+++.+..+....  .......+...+.....+.....++.+.+|+...        +..
T Consensus       217 ~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~  296 (426)
T d1hzua2         217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV  296 (426)
T ss_dssp             TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEE
T ss_pred             CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEe
Confidence            6665552    4567777777776666554322  2233444555555444444455788998888765        334


Q ss_pred             eeeeccCCceeEEEEcCCCCEEEE-------EcCCCceEEEEECCCCceEEEEEe-------CCCcCceEEEEECCCCCE
Q 014007          252 KFIMAHDSRIACFALTQDGQLLAT-------SSTKGTLVRIFNTLDGTLLQEVRR-------GADRAEIYSLAFSSNAQW  317 (432)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~-------~~~dg~~i~vwd~~~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~  317 (432)
                      ..+.+|...+..++|+|++++|++       ++.+++ |+|||++++++..++..       ..+...+.+++|||||++
T Consensus       297 ~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~  375 (426)
T d1hzua2         297 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE  375 (426)
T ss_dssp             EEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE
T ss_pred             EEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE-EEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE
Confidence            567899999999999999999994       556788 99999999988776642       123456999999999997


Q ss_pred             EEEE-----eCCCeEEEEEecCCCC
Q 014007          318 LAVS-----SDKGTVHVFNLKVNSG  337 (432)
Q Consensus       318 l~~~-----~~dg~i~iwd~~~~~~  337 (432)
                      ++..     +.+|.|+|||.++.+.
T Consensus       376 i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         376 VWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             EEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             EEEEEecCCCCCCeEEEEECCCCeE
Confidence            7543     3688999999999873

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=8.5e-21  Score=169.31  Aligned_cols=248  Identities=9%  Similarity=-0.000  Sum_probs=181.2

Q ss_pred             CCCCeEEEEEcCCCCEEE-EEc-CCcEEEEEcCCCeeEEEeeccc--CcceeEEEEeeeCCeEEEecCCCCCC-------
Q 014007           84 PPPTLLHISFNQDHGCFA-AGT-DHGFRIYNCDPFREIFRRDFER--GGGIGVVEMLFRCNILALVGGGPDPQ-------  152 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~-~~~-~~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~s~~~d~~-------  152 (432)
                      +...+.+++|+|||++|+ +++ ++.|.+||+.+++.........  .+...+..+++++++..++.+..+..       
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence            445678899999999875 555 4559999999988764433321  12234456788888877765542100       


Q ss_pred             CCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       153 ~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      ..+..+.+||..+++.+..+.+...+..++|++++.+++ .++.+.+||..+++....+..+... ....+.+++..+..
T Consensus       112 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  190 (337)
T d1pbyb_         112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWN  190 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCC
T ss_pred             ccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCcc-ccceecCCcceeec
Confidence            012789999999999999998888899999999998887 5788999999999888777554322 12233333221110


Q ss_pred             E------------e---------ecCCCCcEEEEEccCCcee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007          232 V------------C---------PGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (432)
Q Consensus       232 ~------------~---------~g~~d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~  288 (432)
                      .            .         .+..++.+.+|+.......  .+..+...+..+.++|++.+++.+  ++. |++||+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-i~v~d~  267 (337)
T d1pbyb_         191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDL  267 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEET
T ss_pred             cccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--ccc-EEEEEC
Confidence            0            0         0123456888888775543  345677888999999999988766  467 999999


Q ss_pred             CCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       289 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      .+++.+..+.   +...+.+++|+|||++|++++.+++|+|||+.+.+.+
T Consensus       268 ~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         268 EKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             TTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            9999999987   4467899999999999999999999999999998743

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.7e-19  Score=159.38  Aligned_cols=274  Identities=11%  Similarity=0.100  Sum_probs=188.1

Q ss_pred             EEEEc-CCcEEEEEcCCCee-EEEeecccCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEeCCCCceeEE----e
Q 014007          100 FAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGE----L  172 (432)
Q Consensus       100 l~~~~-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd~~~~~~~~~----~  172 (432)
                      ++++. ++.|++|+++.... .....+.  +...+..++|+|++..| +++..+     +.|++|++........    .
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~--~~~~v~~la~spDG~~L~v~~~~d-----~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEc--CCCCEeEEEEeCCCCEEEEEECCC-----CeEEEEEEeCCCCcEEEeeec
Confidence            34444 66699999975543 3334443  67788999999999877 555556     9999999876643322    2


Q ss_pred             ecCCceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEE--eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEc
Q 014007          173 SFRSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY  246 (432)
Q Consensus       173 ~~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~  246 (432)
                      .+...+..++|+|||++++.    ++.|.+|+..........  ..+...+..+.++++++.++...  ..+..+.+|+.
T Consensus        80 ~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~--~~~~~i~~~~~  157 (333)
T d1ri6a_          80 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA--LKQDRICLFTV  157 (333)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE--GGGTEEEEEEE
T ss_pred             ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccc--cccceeeEEEe
Confidence            35667888999999998873    668999998776544433  33445667899999998776543  45678999998


Q ss_pred             cCCceee-------eeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCc----eEEEEEeC----CCcCceEEEE
Q 014007          247 ASKRTKF-------IMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGT----LLQEVRRG----ADRAEIYSLA  310 (432)
Q Consensus       247 ~~~~~~~-------~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~----~~~~~~~~----~~~~~i~~~~  310 (432)
                      .......       ..........++|++++.+++... ..+. ..+|+.....    ....+...    ........++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  236 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCc-eEEEeecccccceeeeeeeeeeecCCCccccceeEE
Confidence            7632211       123445678999999998887655 4455 8888865432    22222211    1224567889


Q ss_pred             ECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEc
Q 014007          311 FSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG  389 (432)
Q Consensus       311 ~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  389 (432)
                      +++++++++... .++.+.+|++.......                                .+.......+.+..++|+
T Consensus       237 ~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~p~~~a~s  284 (333)
T d1ri6a_         237 ITPDGRHLYACDRTASLITVFSVSEDGSVL--------------------------------SKEGFQPTETQPRGFNVD  284 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCCE--------------------------------EEEEEEECSSSCCCEEEC
T ss_pred             EecccCceeeecccCCeEEEEEEcCCCCEE--------------------------------EEEEEeCCCCCeeEEEEe
Confidence            999999776654 67899999997765221                                011222344567889999


Q ss_pred             cCCCEEEEEec-CCeEEEEEecCCCCC
Q 014007          390 HQKNTVVILGM-DGSFYRCQFDPVNGG  415 (432)
Q Consensus       390 ~~~~~l~~~~~-dg~v~iw~~~~~~~~  415 (432)
                      |||++|++++. ++.|.+|++|.++|+
T Consensus       285 pDGk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         285 HSGKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             TTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             CCCCEEEEEECCCCeEEEEEEECCCCc
Confidence            99999887765 689999999998764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=1.7e-17  Score=150.22  Aligned_cols=289  Identities=7%  Similarity=-0.052  Sum_probs=193.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc------CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC---
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGT------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ---  152 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~---  152 (432)
                      ..+..++.+++++|||+.+++..      ...|.+||..+++..  ..+. .+..  ..+.|+|++..++.+..+..   
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~--~~~~-~~~~--~~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL--GHVN-GGFL--PNPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEE--EEEe-CCCC--ccEEEcCCCCEEEEEeecCCccc
Confidence            45778899999999999887653      233889998888766  3443 2222  26889999988877543210   


Q ss_pred             --CCCCeEEEEeCCCCceeEEee-cCCc-------eEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCc
Q 014007          153 --YPLNKVMIWDDHQSRCIGELS-FRSE-------VRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPK  217 (432)
Q Consensus       153 --~~~~~v~iwd~~~~~~~~~~~-~~~~-------v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~  217 (432)
                        ..++.|.+||..+++.+..+. +...       ...+.|+++++.+..     ++.+.+|+....+......    ..
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~  167 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----SP  167 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----cc
Confidence              012789999999999888876 3332       245778888876542     5678888887766554432    34


Q ss_pred             ceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee-e------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC
Q 014007          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-M------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~  290 (432)
                      ..+.++++++..+++.  ..|+.+.+|+......... .      .+......+.+++++.++ ..+.++. +.+|+...
T Consensus       168 ~~~~~s~~g~~~~v~~--~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-v~~~~~~~  243 (373)
T d2madh_         168 TCYHIHPGAPSTFYLL--CAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGK-ILQADISA  243 (373)
T ss_pred             eeEEEecCCCcEEEEE--cCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCce-EEEEEcCC
Confidence            5788999998876654  4789999999988554332 1      122234556667776554 5566777 99999887


Q ss_pred             CceEEEEEeCCC----------cCceEEEEECCCCCEEE----------EEeCCCeEEEEEecCCCCCCCCCCCCCCCCC
Q 014007          291 GTLLQEVRRGAD----------RAEIYSLAFSSNAQWLA----------VSSDKGTVHVFNLKVNSGSARSEPRSTSDPT  350 (432)
Q Consensus       291 ~~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~----------~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  350 (432)
                      +..........+          ......+++++++..++          ....++.+.+||+.+++.+            
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~------------  311 (373)
T d2madh_         244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS------------  311 (373)
T ss_pred             CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEE------------
Confidence            654332221111          12334556666666544          3445677888988887632            


Q ss_pred             CCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCE--EEEEecCCeEEEEEecCCCCCcceEee
Q 014007          351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT--VVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                                             ..+ .+...+..++|+|||+.  +++++.||.|++||.  .+|+++..+.
T Consensus       312 -----------------------~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~--~tg~~~~~~~  358 (373)
T d2madh_         312 -----------------------SQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA--GAGDQDQSTV  358 (373)
T ss_pred             -----------------------EEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEEC--CCCCEEEEEC
Confidence                                   112 24456889999999984  467889999999876  6677776665

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=7e-20  Score=163.91  Aligned_cols=250  Identities=8%  Similarity=-0.035  Sum_probs=179.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEE-c-CCcEEEEEcCCCeeEEEeeccc---CcceeEEEEeeeCCeEEEecCCCCCC-----
Q 014007           83 SPPPTLLHISFNQDHGCFAAG-T-DHGFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRCNILALVGGGPDPQ-----  152 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~-~-~~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~s~~~d~~-----  152 (432)
                      .|...+.+++|+|||++|+++ . ++.|++||+.+++.........   .....+..+.+++++..++.++.+..     
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~  116 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  116 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeee
Confidence            455678899999999987554 4 4449999999887764333221   11233457888999877655432100     


Q ss_pred             --CCCCeEEEEeCCCCceeEEee---cCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007          153 --YPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       153 --~~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (432)
                        ..++.+.+|+..+++....+.   ....+..+.+++++.+++.++.+.+|++.+++.+..+..+.. ...+.++|++.
T Consensus       117 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  195 (346)
T d1jmxb_         117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVL  195 (346)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCC
T ss_pred             eccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCC-ccceEEecccc
Confidence              012789999998887655544   456677788889999888899999999999988887765433 33455566554


Q ss_pred             cEEEEe-----------------------ecCCCCcEEEEEccCCcee--eeeccCCceeEEEEcCCCCEEEEEcCCCce
Q 014007          228 SLVLVC-----------------------PGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTL  282 (432)
Q Consensus       228 ~~~~~~-----------------------~g~~d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~  282 (432)
                      .++...                       .+..++.+.+||.......  ....|...+..+.+++++.+++.... +. 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  273 (346)
T d1jmxb_         196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NR-  273 (346)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SE-
T ss_pred             EEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-Ce-
Confidence            432211                       1113345677777765433  34567888999999999888877665 46 


Q ss_pred             EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      |++||..+++.+..+..   ...+.+++|+|||++|++++.||.|++||+++++.+
T Consensus       274 v~v~d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         274 LAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             EEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             EEEEECCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            99999999999988873   357899999999999999999999999999998743

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=2.1e-18  Score=159.16  Aligned_cols=194  Identities=9%  Similarity=0.026  Sum_probs=145.8

Q ss_pred             eeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCee--eEEEe
Q 014007          137 FRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKL--LHQIE  211 (432)
Q Consensus       137 ~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~--~~~~~  211 (432)
                      .+.+..++++...+     |+|.+||..+++++..+.....+..++|+|||+++++   |+.|++||+.+++.  ...+.
T Consensus        28 ~~~~~~~~v~~~d~-----g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~  102 (432)
T d1qksa2          28 WDLENLFSVTLRDA-----GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK  102 (432)
T ss_dssp             CCGGGEEEEEETTT-----TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             CCCCcEEEEEEcCC-----CEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEe
Confidence            34456677888888     9999999999999999995567999999999999983   89999999988653  33333


Q ss_pred             ---eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-eee-----------ccCCceeEEEEcCCCCEEE-E
Q 014007          212 ---TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIM-----------AHDSRIACFALTQDGQLLA-T  275 (432)
Q Consensus       212 ---~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~-----------~~~~~i~~~~~sp~~~~l~-~  275 (432)
                         .+.+.+....|+|||+.+++.  +..++.|++||..+.... .+.           .+......+.++|+|..++ +
T Consensus       103 ~~~~~~~~~~s~~~SpDG~~l~vs--~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs  180 (432)
T d1qksa2         103 IGSEARSIETSKMEGWEDKYAIAG--AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  180 (432)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEE--EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             cCCCCCCeEEecccCCCCCEEEEE--cCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE
Confidence               233334445678899877654  347899999999885543 222           2455677899999998764 5


Q ss_pred             EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCC
Q 014007          276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       276 ~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~  339 (432)
                      ...++. |.+||..+++........ +...+..++|+|||+++++++ .++.+.++|..+.+...
T Consensus       181 ~~~~~~-i~~~d~~~~~~~~~~~i~-~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         181 VKETGK-ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             ETTTTE-EEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             EccCCe-EEEEEccCCCcceEEEEc-ccCccccceECCCCCEEEEeccccceEEEeecccceEEE
Confidence            666788 999999988765543322 346789999999999888776 56689999988766443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=6.2e-18  Score=151.92  Aligned_cols=276  Identities=11%  Similarity=0.072  Sum_probs=183.4

Q ss_pred             EEEcCCCCEEEEEc------CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecC----------CCCCCCC
Q 014007           91 ISFNQDHGCFAAGT------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG----------GPDPQYP  154 (432)
Q Consensus        91 ~~~s~~~~~l~~~~------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~----------~~d~~~~  154 (432)
                      .+.+|||+.+++..      .++|.+||..+++..  ..+. .+.  ...++|+|++..++..          ..+    
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~--~~~~-~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d----   77 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI--GMID-GGF--LPNPVVADDGSFIAHASTVFSRIARGERT----   77 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE--EEEE-ECS--SCEEEECTTSSCEEEEEEEEEETTEEEEE----
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEE--EEEE-CCC--CCceEEcCCCCEEEEEeCCCccccccCCC----
Confidence            35689999887653      334999999988766  3343 122  2368899998766543          234    


Q ss_pred             CCeEEEEeCCCCceeEEee-c-------CCceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccC------
Q 014007          155 LNKVMIWDDHQSRCIGELS-F-------RSEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIAN------  215 (432)
Q Consensus       155 ~~~v~iwd~~~~~~~~~~~-~-------~~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~------  215 (432)
                       +.|++||..+++.+..+. +       ......++|++++..++.     +..+.+|+..+++.+..+.....      
T Consensus        78 -~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d2bbkh_          78 -DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT  156 (355)
T ss_dssp             -EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred             -CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec
Confidence             789999999999888765 2       223456899999987762     56899999999988877754321      


Q ss_pred             -CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceE
Q 014007          216 -PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (432)
Q Consensus       216 -~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~  294 (432)
                       ....+.+++++..+++..  ..++.+.+++.....    ..+...+....+.+++..++.++.++. +++|++..++..
T Consensus       157 ~~~~~~~~~~dg~~~~v~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~  229 (355)
T d2bbkh_         157 APDTFFMHCRDGSLAKVAF--GTEGTPEITHTEVFH----PEDEFLINHPAYSQKAGRLVWPTYTGK-IHQIDLSSGDAK  229 (355)
T ss_dssp             ETTEEEEEETTSCEEEEEC--CSSSCCEEEECCCCS----CTTSCBCSCCEEETTTTEEEEEBTTSE-EEEEECTTSSCE
T ss_pred             CCcceEEEcCCCCEEEEEe--cCCCeEEEEeccccc----ceecceeeeccccCCCCeEEEecCCCe-EEEEecCCCcEE
Confidence             223355566665544332  234444444433321    133444566678888888999999999 999999887643


Q ss_pred             E--EEEeCC--------CcCceEEEEECCCCCEEEEEeCC----------CeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007          295 Q--EVRRGA--------DRAEIYSLAFSSNAQWLAVSSDK----------GTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (432)
Q Consensus       295 ~--~~~~~~--------~~~~i~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (432)
                      .  ....+.        .......+++++++..++....+          +.|.+||..+++.                 
T Consensus       230 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~-----------------  292 (355)
T d2bbkh_         230 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-----------------  292 (355)
T ss_dssp             ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-----------------
T ss_pred             EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE-----------------
Confidence            2  121110        01223458899999988766533          4699999988762                 


Q ss_pred             CceeEeecccceeecceeeEEEEecCCCceEEEEccCCC--EEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN--TVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                                        +..+.. .+.+.+++|+|||+  ++++++.|+.|++|+.  ++|+.+..++
T Consensus       293 ------------------~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~--~tg~~~~~i~  340 (355)
T d2bbkh_         293 ------------------LAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDA--ESGEELRSVN  340 (355)
T ss_dssp             ------------------EEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEET--TTCCEEEEEC
T ss_pred             ------------------EEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC--CCCCEEEEEe
Confidence                              122222 23478999999998  3456777999999876  5677766664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.8e-16  Score=140.75  Aligned_cols=246  Identities=11%  Similarity=0.078  Sum_probs=164.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007           82 SSPPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (432)
Q Consensus        82 ~~~~~~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~  159 (432)
                      ..|.+.|.+|+|+|||++|+++.  ++.|++|+++....................+++++++..++.++.+    .+.|.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~----~~~v~  108 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN----AGNVS  108 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT----TTEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccC----CCcee
Confidence            34778899999999999886554  4559999997654332221111244556779999999877776532    17899


Q ss_pred             EEeCCCCceeEEee---cCCceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEe------eccCCcceEEEecCC
Q 014007          160 IWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIE------TIANPKGLCAVSQGV  226 (432)
Q Consensus       160 iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~------~~~~~~~~~~~~~~~  226 (432)
                      +|+...........   +...+.++.+++++++++.    +..|.+|+...........      ........++|++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         109 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             eeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence            99877665444333   6778899999999988773    5689999987643222111      122334578999998


Q ss_pred             CcEEEEeecCCCCcEEEEEccCCc--ee---eee------ccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceE
Q 014007          227 GSLVLVCPGLQKGQVRVEHYASKR--TK---FIM------AHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLL  294 (432)
Q Consensus       227 ~~~~~~~~g~~d~~i~i~d~~~~~--~~---~~~------~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~  294 (432)
                      ...+...  ...+...++++....  ..   ...      ........+++++++++++.. ..++. +.+|++......
T Consensus       189 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~-~~~~~~~~~~~~  265 (333)
T d1ri6a_         189 QYAYCVN--ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGSV  265 (333)
T ss_dssp             SEEEEEE--TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCC
T ss_pred             eeEEeec--cccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCe-EEEEEEcCCCCE
Confidence            8766543  456777888765522  11   111      223456778999999877655 45667 999998765443


Q ss_pred             EEEEeC-CCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007          295 QEVRRG-ADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (432)
Q Consensus       295 ~~~~~~-~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~  334 (432)
                      ..+... .....+.+++|+|||++|++++ .++.|++|++..
T Consensus       266 ~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         266 LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            333221 1235678899999999988775 568999997754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=2.9e-15  Score=134.15  Aligned_cols=233  Identities=14%  Similarity=0.035  Sum_probs=153.3

Q ss_pred             eEEEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecccCcc----eeEEEEeeeCCeEEEec--CCCC
Q 014007           88 LLHISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGGG----IGVVEMLFRCNILALVG--GGPD  150 (432)
Q Consensus        88 v~~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~s--~~~d  150 (432)
                      +..++|||||++|++.+           ++.|++||..+++..........+.    .....+.|++++..++.  .+.+
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            34689999999887653           3459999999887664333221111    12234678888765543  3444


Q ss_pred             CCCCCCeEEEEeCCCCceeEEeecCCc--------eEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeeccCCcc
Q 014007          151 PQYPLNKVMIWDDHQSRCIGELSFRSE--------VRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKG  218 (432)
Q Consensus       151 ~~~~~~~v~iwd~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~  218 (432)
                           ..+.+|+..+++.+..+.....        ...+.+++++..+..    ++.+.+++......     .+...+.
T Consensus       129 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~  198 (355)
T d2bbkh_         129 -----PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLIN  198 (355)
T ss_dssp             -----CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCS
T ss_pred             -----ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceee
Confidence                 7899999999998887773332        233455555554442    33444444333221     1222344


Q ss_pred             eEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee---cc----------CCceeEEEEcCCCCEEEEEcCC------
Q 014007          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM---AH----------DSRIACFALTQDGQLLATSSTK------  279 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~---~~----------~~~i~~~~~sp~~~~l~~~~~d------  279 (432)
                      ...+..++..++.+   ..++.+++|++..+....+.   .+          ......+++++++..++....+      
T Consensus       199 ~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~  275 (355)
T d2bbkh_         199 HPAYSQKAGRLVWP---TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH  275 (355)
T ss_dssp             CCEEETTTTEEEEE---BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred             eccccCCCCeEEEe---cCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceee
Confidence            56777777665543   36899999999886543322   11          1234568899999988776543      


Q ss_pred             ----CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC--EEEEEeCCCeEEEEEecCCCC
Q 014007          280 ----GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       280 ----g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~  337 (432)
                          .. |++||..+++.+..+..   ...+.+++|+|||+  ++++++.|+.|++||+++++.
T Consensus       276 ~~~~~~-v~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         276 KTASRF-VVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             TSCEEE-EEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             cCCCCe-EEEEeCCCCcEEEEecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence                25 99999999999988874   35688999999998  455667899999999999984

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.72  E-value=1.2e-14  Score=131.15  Aligned_cols=231  Identities=8%  Similarity=-0.040  Sum_probs=151.3

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecccCcceeE-------EEEeeeCCeEEE--ecCCC
Q 014007           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGGGIGV-------VEMLFRCNILAL--VGGGP  149 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~--~s~~~  149 (432)
                      .++|+|||++|+++.           ++.|.+||..+++.......   +....       ..+.|++++..+  .....
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL---PDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEec---CCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            689999999998874           23499999998877643322   22222       234555555433  22233


Q ss_pred             CCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEEEeeccC----CcceEE
Q 014007          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIAN----PKGLCA  221 (432)
Q Consensus       150 d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~  221 (432)
                      +     +.+.+|+....+....   .....++.+++++..++    .|+.+.+|+...++..........    ......
T Consensus       147 ~-----~~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (373)
T d2madh_         147 G-----PAVGLVVQGGSSDDQL---LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQP  218 (373)
T ss_pred             C-----CceEEeeccCCeEEEE---eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeee
Confidence            3     6777887766654433   34456788999987554    289999999988877665543222    112233


Q ss_pred             EecCCCcEEEEeecCCCCcEEEEEccCCceeee---ec----------cCCceeEEEEcCCCCEEE----------EEcC
Q 014007          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI---MA----------HDSRIACFALTQDGQLLA----------TSST  278 (432)
Q Consensus       222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~---~~----------~~~~i~~~~~sp~~~~l~----------~~~~  278 (432)
                      ..+.+...++..  ..++.+.+|+.........   ..          .......+++++++..++          +...
T Consensus       219 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  296 (373)
T d2madh_         219 AQANKSGRIVWP--VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAA  296 (373)
T ss_pred             EEECCCceEEEe--cCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecC
Confidence            344444444443  3678888998877443221   11          122334556666665544          4455


Q ss_pred             CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCE--EEEEeCCCeEEEEEecCCCC
Q 014007          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW--LAVSSDKGTVHVFNLKVNSG  337 (432)
Q Consensus       279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~~~~dg~i~iwd~~~~~~  337 (432)
                      ++. |.+||..+++.+..+.   +...+..++|+|||+.  +++++.|++|++||+.+++.
T Consensus       297 ~~~-v~~~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         297 AKE-VTSVTGLVGQTSSQIS---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             CCe-EEEEECCCCcEEEEec---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            667 9999999999998887   4467899999999984  46788999999999999984

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=2.5e-14  Score=128.88  Aligned_cols=281  Identities=6%  Similarity=-0.073  Sum_probs=178.3

Q ss_pred             CCCCeEEEEEcCCCCEE--EEEc--CCc--EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEec----------C
Q 014007           84 PPPTLLHISFNQDHGCF--AAGT--DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG----------G  147 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l--~~~~--~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s----------~  147 (432)
                      +.+....++..++++..  +...  ++.  +.+||.++++...  .+. .+...  .+.+++++..++.          +
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~--~~~-~~~~~--~~a~spDg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLG--HSL-GAFLS--LAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEE--EEE-ECTTC--EEEECTTSSCEEEEEEEETTTTSS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEE--EEe-CCCCC--cceECCCCCEEEEEcccCcccccc
Confidence            34444555668888753  3322  333  6677877777653  333 22222  4678888876654          2


Q ss_pred             CCCCCCCCCeEEEEeCCCCceeEEee-cC-------CceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeeccC
Q 014007          148 GPDPQYPLNKVMIWDDHQSRCIGELS-FR-------SEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIAN  215 (432)
Q Consensus       148 ~~d~~~~~~~v~iwd~~~~~~~~~~~-~~-------~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~  215 (432)
                      ..+     +.|++||..+++.+..+. +.       .....++|+|||++++.    ++.+.+||+.+++....+..+..
T Consensus        93 ~~d-----~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~  167 (368)
T d1mdah_          93 KRT-----DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC  167 (368)
T ss_dssp             SEE-----EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC
T ss_pred             ccC-----CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc
Confidence            344     789999999999888876 22       22346899999988872    68999999999998888765433


Q ss_pred             CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-------eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~  288 (432)
                      .    .+.+.++..+++.  +.||.+.++++......       ....+...+..+.+.+++..+.+.  .+. +++++.
T Consensus       168 ~----~~~~~~~~~~v~~--~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~-v~~~~~  238 (368)
T d1mdah_         168 F----HIHPGAAATHYLG--SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASS-ILQGDI  238 (368)
T ss_dssp             C----CCEEEETTEEECC--CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSC-CEEEEC
T ss_pred             c----eEccCCCceEEEE--cCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCC-EEEEee
Confidence            2    2344555555443  46888888887763321       123345566678888888766544  345 777777


Q ss_pred             CCCceEEEEEeCCC----------cCceEEEEECCCCCEEEEEeCC---------CeEEEEEecCCCCCCCCCCCCCCCC
Q 014007          289 LDGTLLQEVRRGAD----------RAEIYSLAFSSNAQWLAVSSDK---------GTVHVFNLKVNSGSARSEPRSTSDP  349 (432)
Q Consensus       289 ~~~~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~  349 (432)
                      ..++..........          ......+++++++..++....+         ..|.+||..+++.+..         
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~---------  309 (368)
T d1mdah_         239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP---------  309 (368)
T ss_dssp             CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC---------
T ss_pred             cCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE---------
Confidence            66554432221100          0123457888998877665322         3588999998873321         


Q ss_pred             CCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCE--EEEEecCCeEEEEEecCCCCCcceEee
Q 014007          350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT--VVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                                                +. +...+..++|+|||+.  ++++..|+.|++||.  .+|+.+..++
T Consensus       310 --------------------------~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~--~tgk~~~~i~  354 (368)
T d1mdah_         310 --------------------------IS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA--ASDQDQSSVE  354 (368)
T ss_dssp             --------------------------CE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEES--SSCEEEEECC
T ss_pred             --------------------------ec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEEC--CCCCEEEEEE
Confidence                                      11 1234788999999973  456677999999875  5666665554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.57  E-value=1.2e-13  Score=123.99  Aligned_cols=276  Identities=11%  Similarity=0.014  Sum_probs=173.2

Q ss_pred             EEEEc-CCcEEEEEcCCCeeEEEee-cc--------------------------cCcceeEEEEeeeCCeEEEec-CCCC
Q 014007          100 FAAGT-DHGFRIYNCDPFREIFRRD-FE--------------------------RGGGIGVVEMLFRCNILALVG-GGPD  150 (432)
Q Consensus       100 l~~~~-~~~i~iw~~~~~~~~~~~~-~~--------------------------~~~~~~v~~~~~~~~~~~~~s-~~~d  150 (432)
                      +++|+ ++.|++|++.+++...... +.                          ..|..........+||.+++. ...+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            34444 4559999998777653311 11                          012233444556788887744 4455


Q ss_pred             CCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecCcc--EEEe--CC------------------eEEEEEcCCCee
Q 014007          151 PQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRI--IVVL--EQ------------------KIFVYNFADLKL  206 (432)
Q Consensus       151 ~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~--~~~~--d~------------------~i~i~d~~~~~~  206 (432)
                           +.|.++|+.++++...+.  ....+..++|+|+++  +++.  ..                  .+..+|..+.+.
T Consensus        94 -----~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          94 -----TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             -----TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             -----CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence                 899999999999888766  678899999999988  4442  22                  245688888887


Q ss_pred             eEEEeeccCCcceEEEecCCCcEEEEeecCC--------------------------------------CCcEEEEEccC
Q 014007          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQ--------------------------------------KGQVRVEHYAS  248 (432)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------------------------------------d~~i~i~d~~~  248 (432)
                      ..++.... ....+.++|+|+.+++.+.++.                                      ++.+.+++...
T Consensus       169 ~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~  247 (441)
T d1qnia2         169 AWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE  247 (441)
T ss_dssp             EEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS
T ss_pred             eEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC
Confidence            77776544 4568999999998887653321                                      23333443333


Q ss_pred             C-ceeeeeccCCceeEEEEcCCCCEEEE-EcCCCceEEEEECCCCce--------EEEEEeCC-CcCceEEEEECCCCCE
Q 014007          249 K-RTKFIMAHDSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLDGTL--------LQEVRRGA-DRAEIYSLAFSSNAQW  317 (432)
Q Consensus       249 ~-~~~~~~~~~~~i~~~~~sp~~~~l~~-~~~dg~~i~vwd~~~~~~--------~~~~~~~~-~~~~i~~~~~s~~~~~  317 (432)
                      . .+..+.. ......+.++|||+++++ +..+++ |.|||+.+.+.        ...+.... ..-.....+|+++|..
T Consensus       248 ~~v~~~IPv-gksPhGv~vSPDGkyl~~~~~~~~t-vsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~  325 (441)
T d1qnia2         248 SEFTRYIPV-PKNPHGLNTSPDGKYFIANGKLSPT-VSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA  325 (441)
T ss_dssp             CSSEEEECC-BSSCCCEEECTTSCEEEEECTTSSB-EEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred             CceEEEEeC-CCCccCceECCCCCEEEEeCCcCCc-EEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE
Confidence            2 2333333 334678999999998754 667888 99999865221        01111110 1123566789999998


Q ss_pred             EEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEE
Q 014007          318 LAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVI  397 (432)
Q Consensus       318 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  397 (432)
                      +.+...|..|..|++........           .. .        .......+++....+|...+.+..|+|||++|++
T Consensus       326 yts~~~ds~v~kw~~~~~~~~~~-----------~~-~--------~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s  385 (441)
T d1qnia2         326 YTTLFIDSQVCKWNIADAIKHYN-----------GD-R--------VNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV  385 (441)
T ss_dssp             EEEETTTTEEEEEEHHHHHHHHT-----------TC-C--------CCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEE
T ss_pred             EEcccccceEEEeccchhhhhhc-----------cC-C--------CceeEeccccccCCCCCccccccccCCCCcEEEe
Confidence            88888999999999863220000           00 0        0000011112223577777888899999999999


Q ss_pred             E---ecCCe
Q 014007          398 L---GMDGS  403 (432)
Q Consensus       398 ~---~~dg~  403 (432)
                      +   +.|..
T Consensus       386 ~~k~s~dr~  394 (441)
T d1qnia2         386 LSKFSKDRF  394 (441)
T ss_dssp             EESCCGGGS
T ss_pred             cCccccccC
Confidence            9   55643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.54  E-value=1.3e-12  Score=121.52  Aligned_cols=142  Identities=11%  Similarity=0.003  Sum_probs=101.7

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEe---ecccCcceeEEEEeeeCCeEEEecCCCCCC-C---CCCeEEEEe
Q 014007           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQ-Y---PLNKVMIWD  162 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~-~---~~~~v~iwd  162 (432)
                      .+.|.++++++.. .++++.+||+.+++.....   .+. .+...+.++.|+||+..|+....... +   ..+.+.+||
T Consensus        21 ~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFD-EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE-SSSCEEEEETTTCCEEEEECTTTTT-TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE-cCCcEEEEECCCCCEEEEEchhhhh-hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4789999987654 4667999999988765322   222 45567899999999998876532100 0   016889999


Q ss_pred             CCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeec------------------cCCcceEEE
Q 014007          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI------------------ANPKGLCAV  222 (432)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~------------------~~~~~~~~~  222 (432)
                      +.+++......+...+..+.|+|||..++  .++.+++|+..+++..+.....                  ......+.|
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w  178 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW  178 (470)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred             CCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEE
Confidence            99887655444888999999999999988  4899999999887655433211                  122345789


Q ss_pred             ecCCCcEEEEe
Q 014007          223 SQGVGSLVLVC  233 (432)
Q Consensus       223 ~~~~~~~~~~~  233 (432)
                      +|||+.++++.
T Consensus       179 SPDGk~ia~~~  189 (470)
T d2bgra1         179 SPNGTFLAYAQ  189 (470)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCccceeE
Confidence            99999877654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=1.7e-13  Score=123.33  Aligned_cols=235  Identities=6%  Similarity=-0.040  Sum_probs=147.6

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecccC----cceeEEEEeeeCCeEEEecCC-CCCCC
Q 014007           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERG----GGIGVVEMLFRCNILALVGGG-PDPQY  153 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~s~~-~d~~~  153 (432)
                      .++|+|||+.|++.+           ++.|++||..+++......+...    .......+.|++++..++.+. .+   
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~---  145 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS---  145 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS---
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC---
Confidence            589999999888764           33499999998877644333211    111223578999998776554 44   


Q ss_pred             CCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEe------eccCCcceEEEecC
Q 014007          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIE------TIANPKGLCAVSQG  225 (432)
Q Consensus       154 ~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~------~~~~~~~~~~~~~~  225 (432)
                        +.+.+||+.+++.+..+....... +.......+++  .||.+.++++..........      .+........+.++
T Consensus       146 --~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T d1mdah_         146 --SAAAGLSVPGASDDQLTKSASCFH-IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             --SCEEEEEETTTEEEEEEECSSCCC-CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             --CeEEEEECCCCcEeEEeeccCcce-EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence              899999999999988887322221 11112222333  27778888776543322221      11122223444444


Q ss_pred             CCcEEEEeecCCCCcEEEEEccCCceeeeec-------------cCCceeEEEEcCCCCEEEEEcCC---------CceE
Q 014007          226 VGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSSTK---------GTLV  283 (432)
Q Consensus       226 ~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~d---------g~~i  283 (432)
                      +  .++..   ..+.+.++++.......+..             .......+++++++..++....+         .. |
T Consensus       223 g--~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~-v  296 (368)
T d1mdah_         223 G--MLVWA---VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN-T  296 (368)
T ss_dssp             T--EEEEC---BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE-E
T ss_pred             c--EEEEe---cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCce-E
Confidence            3  33333   34667777766544332211             11223457889998877665332         24 8


Q ss_pred             EEEECCCCceEEEEEeCCCcCceEEEEECCCCCE--EEEEeCCCeEEEEEecCCCCCC
Q 014007          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW--LAVSSDKGTVHVFNLKVNSGSA  339 (432)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~  339 (432)
                      ++||..+++.+..+..   ...+.+++|+|||+.  ++++..++.|++||..+++.+.
T Consensus       297 ~v~D~~t~~~~~~~~~---~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         297 SSVTASVGQTSGPISN---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             EEEESSSCCEEECCEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             EEEECCCCcEeEEecC---CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            9999999999888874   357889999999973  4566789999999999998543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=8e-13  Score=118.68  Aligned_cols=237  Identities=9%  Similarity=0.056  Sum_probs=157.3

Q ss_pred             eEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-c------------------------------CCceEEEEEecCccE
Q 014007          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F------------------------------RSEVRSVKLRRDRII  189 (432)
Q Consensus       141 ~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~------------------------------~~~v~~~~~~~~~~~  189 (432)
                      ...+++++.+     |.|++|++.+++.++++. .                              .........+|||++
T Consensus        11 ~y~f~Sgg~s-----G~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~   85 (441)
T d1qnia2          11 YYGFWSGGHQ-----GEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKY   85 (441)
T ss_dssp             EEEEEECBTT-----CCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEE
T ss_pred             EEEEEeCCCC-----CcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCE
Confidence            4567788887     999999999998887764 1                              111233445789998


Q ss_pred             EEe----CCeEEEEEcCCCeeeEEEee-ccCCcceEEEecCCCcEEEEeecCCC----------------CcEEEEEccC
Q 014007          190 VVL----EQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQK----------------GQVRVEHYAS  248 (432)
Q Consensus       190 ~~~----d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d----------------~~i~i~d~~~  248 (432)
                      ++.    +++|.++|+.+++..+.+.. .......++|+|+++..++++.+...                ..+..+|..+
T Consensus        86 lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t  165 (441)
T d1qnia2          86 LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET  165 (441)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred             EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc
Confidence            873    67999999999998877654 34556789999999998877644211                1224466666


Q ss_pred             CceeeeeccCCceeEEEEcCCCCEEEEEcCCC-----------------------------------------ceEEEEE
Q 014007          249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKG-----------------------------------------TLVRIFN  287 (432)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-----------------------------------------~~i~vwd  287 (432)
                      ..+.....-......+.|+|+|+++++.+.+.                                         . +.+++
T Consensus       166 ~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v-~vvd~  244 (441)
T d1qnia2         166 MDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKV-PVVDG  244 (441)
T ss_dssp             CSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCC-CEEEC
T ss_pred             ceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCc-EEEEc
Confidence            44433223345678899999999988776542                                         2 45555


Q ss_pred             CCCCceEEEEEeCCCcCceEEEEECCCCCEEEE-EeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccce
Q 014007          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV-SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKY  366 (432)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (432)
                      ....+.+..+..+   .....+.++|||+++++ +..+++|.|||+++....-..             .           
T Consensus       245 ~~~~~v~~~IPvg---ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~-------------~-----------  297 (441)
T d1qnia2         245 RGESEFTRYIPVP---KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFED-------------K-----------  297 (441)
T ss_dssp             SSSCSSEEEECCB---SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTT-------------S-----------
T ss_pred             ccCCceEEEEeCC---CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhc-------------c-----------
Confidence            5555666666643   34678999999998765 458999999999875421100             0           


Q ss_pred             eecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          367 FSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                      ....+.+.......-.....+|.++|+.+.+...|..|..|+++
T Consensus       298 ~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         298 IELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             SCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             CCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            00000010000000013446899999999999999999999985

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.41  E-value=1.7e-10  Score=102.94  Aligned_cols=273  Identities=10%  Similarity=0.027  Sum_probs=154.6

Q ss_pred             cEEEEEc--CCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC-ceeEEe--ecCCceEEE
Q 014007          107 GFRIYNC--DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCIGEL--SFRSEVRSV  181 (432)
Q Consensus       107 ~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~-~~~~~~--~~~~~v~~~  181 (432)
                      +|.++.+  ++++........-.....+..|++++++..+.+...      +.+..|.+... ......  ........+
T Consensus        15 ~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~p~~v   88 (365)
T d1jofa_          15 AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM------KKWSSFAVKSPTEIVHEASHPIGGHPRAN   88 (365)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB------TEEEEEEEEETTEEEEEEEEECCSSGGGG
T ss_pred             CEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC------CcEEEEEEeCCCCeEEEeeecCCCCcEEE
Confidence            3655554  444433322221123344456889998877766554      57777766543 222222  234455677


Q ss_pred             EEecCccE--EEe----CCeEEEEEcCC-C------------ee---eEEEe-eccCCcceEEEecCCCcEEEEeecCCC
Q 014007          182 KLRRDRII--VVL----EQKIFVYNFAD-L------------KL---LHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQK  238 (432)
Q Consensus       182 ~~~~~~~~--~~~----d~~i~i~d~~~-~------------~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d  238 (432)
                      .++++++.  ++.    .+.|..+.+.. +            +.   ..... .....+..+.|+|+|+.++++.  ...
T Consensus        89 ~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d--~g~  166 (365)
T d1jofa_          89 DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD--LTA  166 (365)
T ss_dssp             CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE--TTT
T ss_pred             EECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee--CCC
Confidence            77888763  332    34555544322 1            11   11110 1112345799999999887654  234


Q ss_pred             CcEEEEEccC-Ccee---ee--eccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCCceEEEEE--eC---------
Q 014007          239 GQVRVEHYAS-KRTK---FI--MAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVR--RG---------  300 (432)
Q Consensus       239 ~~i~i~d~~~-~~~~---~~--~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~~~~~~~~--~~---------  300 (432)
                      ..|.+|+... +.+.   ..  .........++|+|+++++.+..+ ++. |.+|++..++......  ..         
T Consensus       167 d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~-V~v~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (365)
T d1jofa_         167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHSFPLIPPGIPD  245 (365)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEEESSCTTCCC
T ss_pred             CEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCE-EEEEEecCCCceEEEEeeeeccccccccc
Confidence            6788887654 2221   11  123567889999999998866554 566 9999987664332211  10         


Q ss_pred             ------CCcCceEEEEECCCCCEEEEEeC-C-----CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceee
Q 014007          301 ------ADRAEIYSLAFSSNAQWLAVSSD-K-----GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS  368 (432)
Q Consensus       301 ------~~~~~i~~~~~s~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (432)
                            ........+.++|||++|+++.. +     +.|..|++.....+.                             
T Consensus       246 ~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~-----------------------------  296 (365)
T d1jofa_         246 RDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE-----------------------------  296 (365)
T ss_dssp             BCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE-----------------------------
T ss_pred             cccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCcee-----------------------------
Confidence                  01123567899999999987742 2     236677766533110                             


Q ss_pred             cceeeEEEEecCCCceEEEEcc-CCCEEEEEe-cCCeEEEEEecCCCCCcc
Q 014007          369 SEWSVAQFRLVEGSPYIVAFGH-QKNTVVILG-MDGSFYRCQFDPVNGGEM  417 (432)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~dg~v~iw~~~~~~~~~~  417 (432)
                      ....+............++|+| +|++|++++ .++.|.+|+++.+.+..+
T Consensus       297 ~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~  347 (365)
T d1jofa_         297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRV  347 (365)
T ss_dssp             EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEE
T ss_pred             eEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEE
Confidence            0000000011223467799998 899887775 578999999977654333

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.37  E-value=2.1e-10  Score=102.33  Aligned_cols=244  Identities=10%  Similarity=0.082  Sum_probs=146.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEe-ecccCcceeEEEEeeeCCeE--EEecCCCCCCCCCCeEEE
Q 014007           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFRCNIL--ALVGGGPDPQYPLNKVMI  160 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~~~~~~v~i  160 (432)
                      ....+..|+|+|++++|.++..+.+..|.++........ ...  .......+.+++++.  ++++....    .+.|..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~p~~v~~~~~~~~~~v~~a~~~----~~~v~~  111 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP--IGGHPRANDADTNTRAIFLLAAKQP----PYAVYA  111 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE--CCSSGGGGCTTSCCEEEEEEECSST----TCCEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeec--CCCCcEEEEECCCCCEEEEEEecCC----CCEEEE
Confidence            344566799999999998888777888877643322211 111  122234555666665  34443221    145555


Q ss_pred             EeCCC-------------Cc---eeEEee--cCCceEEEEEecCccEEEe----CCeEEEEEcCCC-eee--EEEee--c
Q 014007          161 WDDHQ-------------SR---CIGELS--FRSEVRSVKLRRDRIIVVL----EQKIFVYNFADL-KLL--HQIET--I  213 (432)
Q Consensus       161 wd~~~-------------~~---~~~~~~--~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~-~~~--~~~~~--~  213 (432)
                      +.+..             ++   ......  ....+.++.|+|||++++.    .+.|.+|+.... ...  ..+..  .
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T d1jofa_         112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             eEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC
Confidence            44321             11   111111  2345789999999998773    468888886543 222  12211  2


Q ss_pred             cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee--------------------ccCCceeEEEEcCCCCEE
Q 014007          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--------------------AHDSRIACFALTQDGQLL  273 (432)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--------------------~~~~~i~~~~~sp~~~~l  273 (432)
                      ....+.++|+|+++.++++.  ..++.|.+|+++......+.                    .+......+.++|+|++|
T Consensus       192 g~gPr~i~f~pdg~~~yv~~--e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l  269 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALM--EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCceEEEEECCCCceEEEec--cCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEE
Confidence            23456799999999887765  46899999998764322111                    112235678999999999


Q ss_pred             EEEcC------CCceEEEEECCCCceEEEE---E-eCCCcCceEEEEECC-CCCEEEEEe-CCCeEEEEEecCCC
Q 014007          274 ATSST------KGTLVRIFNTLDGTLLQEV---R-RGADRAEIYSLAFSS-NAQWLAVSS-DKGTVHVFNLKVNS  336 (432)
Q Consensus       274 ~~~~~------dg~~i~vwd~~~~~~~~~~---~-~~~~~~~i~~~~~s~-~~~~l~~~~-~dg~i~iwd~~~~~  336 (432)
                      +++..      .+. |..|++.....+...   . ..........++++| +|++|+++. .++.|.+|+++...
T Consensus       270 yvsnr~~~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         270 FASSRANKFELQGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEEESSTTSCCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEEcccCCCccceE-EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            88743      233 666776543222211   1 111123467799998 899887775 77999999987643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=5.4e-10  Score=95.08  Aligned_cols=218  Identities=11%  Similarity=0.052  Sum_probs=138.0

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (432)
                      |.|.|.+......  ...  +...+...+|+|||..|+-......  ...+.+.+...+.......+........|+|+|
T Consensus        21 l~i~d~dG~~~~~--l~~--~~~~~~sP~wSPDGk~IAf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg   94 (269)
T d2hqsa1          21 LRVSDYDGYNQFV--VHR--SPQPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPRHNGAPAFSPDG   94 (269)
T ss_dssp             EEEEETTSCSCEE--EEE--ESSCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEECCSSCEEEEEECTTS
T ss_pred             EEEEcCCCCCcEE--Eec--CCCceeeeEECCCCCEEEEEEeecc--CcceeeeecccCceeEEeeeecccccceecCCC
Confidence            5566666544432  222  4556778899999988875432211  146778887777766666688888999999999


Q ss_pred             cEEEe----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCce
Q 014007          188 IIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (432)
Q Consensus       188 ~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i  261 (432)
                      ..++.    ++  .+..+........... ..........++++++..+++........|.+.++.......+..+....
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~  173 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQN  173 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEE
T ss_pred             CeeeEeeecCCccceeecccccccceeee-eccccccccccccccccceecccccCCceEeeeecccccceeeecccccc
Confidence            98883    33  3333333333322222 22333345567777777666542222335666677776666666777778


Q ss_pred             eEEEEcCCCCEEEEEcCCCce--EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC---CCeEEEEEecCCC
Q 014007          262 ACFALTQDGQLLATSSTKGTL--VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNLKVNS  336 (432)
Q Consensus       262 ~~~~~sp~~~~l~~~~~dg~~--i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~  336 (432)
                      ....|+|+++.++..+.++..  |.+.|...+.. ..+.   .........|||||++|+-.+.   ...|+++++..+.
T Consensus       174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~---~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS---STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECC---CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             cccccccccceeEEEeecCCceeeeEeecccccc-eEee---cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            889999999998887665521  55556555543 2222   3356778899999999876553   3468889987765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.31  E-value=4.2e-11  Score=111.13  Aligned_cols=136  Identities=15%  Similarity=0.134  Sum_probs=103.2

Q ss_pred             EEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee------cCCceEEEEEecCccEEEe------------CC
Q 014007          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS------FRSEVRSVKLRRDRIIVVL------------EQ  194 (432)
Q Consensus       133 ~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~------------d~  194 (432)
                      ..+.|.+++.++...+       +.+.+||+.+++....+.      +...|.++.|+|||++|+.            ++
T Consensus        20 ~~~~W~~d~~~~~~~~-------~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~   92 (470)
T d2bgra1          20 YSLRWISDHEYLYKQE-------NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (470)
T ss_dssp             CCCEECSSSEEEEESS-------SCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             cCCEeCCCCEEEEEcC-------CcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCc
Confidence            3466888888777653       789999999998766554      3467999999999998883            35


Q ss_pred             eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec------------------
Q 014007          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA------------------  256 (432)
Q Consensus       195 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~------------------  256 (432)
                      .+.+||+.+++. ..+..+...+..+.|+|||+.++++    .++.+.+|+..++....+..                  
T Consensus        93 ~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~----~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~  167 (470)
T d2bgra1          93 SYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV----WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE  167 (470)
T ss_dssp             EEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred             eEEEEECCCCcc-cccccCCccccccccccCcceeeEe----ecccceEEECCCCceeeeeeccCCCcccccccceeeee
Confidence            789999998774 4566677788899999999988765    36789999988765433221                  


Q ss_pred             -cCCceeEEEEcCCCCEEEEEcCCC
Q 014007          257 -HDSRIACFALTQDGQLLATSSTKG  280 (432)
Q Consensus       257 -~~~~i~~~~~sp~~~~l~~~~~dg  280 (432)
                       ..+....+.|||||++|+....|.
T Consensus       168 ~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         168 EVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             eecCCccccEECCCCCccceeEecC
Confidence             123346688999999999876553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=1.4e-08  Score=86.60  Aligned_cols=234  Identities=12%  Similarity=0.211  Sum_probs=156.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEeecc-----cCcceeEEEEeeeC--CeEEEecCCCCCCCCCCeE
Q 014007           87 TLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~v  158 (432)
                      ....|+++++|+++++-..+ .|++|+.+. +..  ..+.     .+....-..+++..  ...+++....+     +.|
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~i   95 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-----HQI   95 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-----CEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEE--EEecccCCCcccccccccccccccccccceeccCCc-----ccc
Confidence            45889999999987776544 499998653 322  2221     01112223344332  23344444444     678


Q ss_pred             EEEeCCCCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc--CCcceEEEecCCCcEEE
Q 014007          159 MIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  231 (432)
                      ..++ ..++....+.  .......+++.+++.+++.   .+.+.+++. +++.+..+....  .....+++.++++ +++
T Consensus        96 ~~~~-~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v  172 (279)
T d1q7fa_          96 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFI  172 (279)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE-EEE
T ss_pred             cccc-ccccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecccee-EEe
Confidence            8887 4677666665  4566789999999887775   457888884 566666664322  3334567777664 443


Q ss_pred             EeecCCCCcEEEEEccCCceeeee--ccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007          232 VCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  308 (432)
                      +  ....+.|++||.....+..+.  ++......|++.++|+++++-.. ++. |.+|+ .+|+.+..+...........
T Consensus       173 ~--d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~-v~~f~-~~G~~~~~~~~~~~~~~p~~  248 (279)
T d1q7fa_         173 S--DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFT-QDGQLISALESKVKHAQCFD  248 (279)
T ss_dssp             E--EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEEC-TTSCEEEEEEESSCCSCEEE
T ss_pred             e--eccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcE-EEEEC-CCCCEEEEEeCCCCCCCEeE
Confidence            3  346789999998876665553  34556789999999998777554 456 99998 68998888875443456899


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       309 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                      |++.+||.+++ ++.+++|++|......
T Consensus       249 vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         249 VALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             EEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            99999997555 5578999999987764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=6.4e-09  Score=88.22  Aligned_cols=215  Identities=15%  Similarity=0.084  Sum_probs=133.4

Q ss_pred             eEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      .|+|.|...............+...+|||||+.|+.      ...+.+.+...+... .+..+........|+|++..++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeee
Confidence            688888765555555558888999999999999983      335777777665543 4445566677889999999887


Q ss_pred             EEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc-CCCc-eEEEEECCCCceEEEEEeCCCcCceEE
Q 014007          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGT-LVRIFNTLDGTLLQEVRRGADRAEIYS  308 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~-~i~vwd~~~~~~~~~~~~~~~~~~i~~  308 (432)
                      +.........+..+.....................+++++..++..+ .++. .|.+.++..+.......   .......
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~---~~~~~~~  175 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW---EGSQNQD  175 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC---SSSEEEE
T ss_pred             EeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeec---ccccccc
Confidence            76533222223333333344444444555556667788776655443 3443 16666766654433322   4466788


Q ss_pred             EEECCCCCEEEEEeC-CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007          309 LAFSSNAQWLAVSSD-KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA  387 (432)
Q Consensus       309 ~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  387 (432)
                      ..|+|+++.++..+. .+...+|........                                  . ....+.+......
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~----------------------------------~-~~~~~~~~~~~p~  220 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------------------------------V-QVLSSTFLDETPS  220 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCC----------------------------------E-EECCCSSSCEEEE
T ss_pred             cccccccceeEEEeecCCceeeeEeeccccc----------------------------------c-eEeecCccccceE
Confidence            899999999887764 445555554433211                                  0 1222344566789


Q ss_pred             EccCCCEEEEEecC---CeEEEEEec
Q 014007          388 FGHQKNTVVILGMD---GSFYRCQFD  410 (432)
Q Consensus       388 ~s~~~~~l~~~~~d---g~v~iw~~~  410 (432)
                      |||||+.|+..+..   +.+++++++
T Consensus       221 ~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         221 LAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             ECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             ECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            99999998765543   345665554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.25  E-value=4.9e-09  Score=90.70  Aligned_cols=224  Identities=13%  Similarity=0.037  Sum_probs=145.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~  165 (432)
                      .+..++++|||+++++...++ |..|+.+.....   ..  .....+..+++.+++.++++...+     +.+..|+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~---~~--~~~~~~~gla~~~dG~l~v~~~~~-----~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI---HA--TVEGKVSGLAFTSNGDLVATGWNA-----DSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE---EE--ECSSEEEEEEECTTSCEEEEEECT-----TSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEE---EE--cCCCCcceEEEcCCCCeEEEecCC-----ceEEEEEecc
Confidence            578899999999988887555 766664433222   11  244678899999999988877665     7777777543


Q ss_pred             C--ceeEE--eecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeec--------cCCcceEEEecCCCcEE
Q 014007          166 S--RCIGE--LSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETI--------ANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       166 ~--~~~~~--~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  230 (432)
                      .  .....  .........+.+.+++.+++.   ++.+..++...+.........        ........+..+++.++
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~  178 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY  178 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred             cccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCcee
Confidence            3  22222  224567889999999998885   568888888776543222211        11122344555667666


Q ss_pred             EEeecCCCCcEEEEEccCCce---eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007          231 LVCPGLQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (432)
Q Consensus       231 ~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  307 (432)
                      ++.  ...+.|..++......   ............++++++|+++++...++. |..++. +++..........-...+
T Consensus       179 ~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~-V~~i~p-~G~~~~~~~~~~~~~~pt  254 (302)
T d2p4oa1         179 VSN--TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS-VVRIAP-DRSTTIIAQAEQGVIGST  254 (302)
T ss_dssp             EEE--TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC-EEEECT-TCCEEEEECGGGTCTTEE
T ss_pred             eec--CCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCc-EEEECC-CCCEEEEEecCCCCCCce
Confidence            654  4678888888776321   112223445678999999998888888888 888874 455443333221224689


Q ss_pred             EEEE---CCCCCEEEEEeCC
Q 014007          308 SLAF---SSNAQWLAVSSDK  324 (432)
Q Consensus       308 ~~~~---s~~~~~l~~~~~d  324 (432)
                      +++|   ++|++.|+.++..
T Consensus       255 ~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         255 AVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEECCSTTTTTEEEEEECT
T ss_pred             EEEEcCCCCCCCEEEEECCC
Confidence            9999   6788888766544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=2.5e-08  Score=85.01  Aligned_cols=231  Identities=13%  Similarity=0.136  Sum_probs=153.8

Q ss_pred             eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeec-------CCceEEEEEecC-ccEEE-e---CCeEEE
Q 014007          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-------RSEVRSVKLRRD-RIIVV-L---EQKIFV  198 (432)
Q Consensus       131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~-~~~~~-~---d~~i~i  198 (432)
                      .-..++.++++.++++...+     +.|++||. +|+.+..+..       ......+++..+ +..++ .   ++.|..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n-----~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~   97 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNN-----HRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI   97 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGG-----TEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccEEEEcCCCCEEEEECCC-----CEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCcccccc
Confidence            45788888988888876555     89999994 5777776641       112345665554 34444 2   457777


Q ss_pred             EEcCCCeeeEEEeec-cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee--eccCCceeEEEEcCCCCEEEE
Q 014007          199 YNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLAT  275 (432)
Q Consensus       199 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~~i~~~~~sp~~~~l~~  275 (432)
                      ++. .++....+... ......+++.+++. ++++.  ...+.+.+++.....+..+  ..+......+++.++++++++
T Consensus        98 ~~~-~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~--~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~  173 (279)
T d1q7fa_          98 YNQ-YGQFVRKFGATILQHPRGVTVDNKGR-IIVVE--CKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  173 (279)
T ss_dssp             ECT-TSCEEEEECTTTCSCEEEEEECTTSC-EEEEE--TTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             ccc-cccceeecCCCcccccceeccccCCc-EEEEe--eccceeeEeccCCceeecccccccccccceeeeccceeEEee
Confidence            774 56666555322 23345677877775 33332  3567788888776655554  245567889999999998888


Q ss_pred             EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007          276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (432)
Q Consensus       276 ~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (432)
                      ....+. |++||. +++.+.++...........|++.++|+++++-. .++.|.+|+. +++.                 
T Consensus       174 d~~~~~-V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~-----------------  233 (279)
T d1q7fa_         174 DNRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQL-----------------  233 (279)
T ss_dssp             EGGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCE-----------------
T ss_pred             eccccc-eeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCE-----------------
Confidence            888888 999994 777777774322334678999999999777654 3457999874 3431                 


Q ss_pred             CceeEeecccceeecceeeEEEEec--CCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007          355 SLSFIKGVLPKYFSSEWSVAQFRLV--EGSPYIVAFGHQKNTVVILGMDGSFYRCQFD  410 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~  410 (432)
                                        +.++...  ......|++.+||+++ +++.++.|++|++.
T Consensus       234 ------------------~~~~~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         234 ------------------ISALESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYV  272 (279)
T ss_dssp             ------------------EEEEEESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECS
T ss_pred             ------------------EEEEeCCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEee
Confidence                              1112111  1346789999999755 45678999999873

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=6.9e-09  Score=87.63  Aligned_cols=233  Identities=8%  Similarity=-0.033  Sum_probs=147.7

Q ss_pred             CeEEEEEcCCCCEEEEEc-CCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007           87 TLLHISFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~  164 (432)
                      .-..|+++++|.++++.. ..+ +..++........ ...  ........+++++++.++++....     +.+++++..
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-~~~--~~~~~p~gvav~~~g~i~v~d~~~-----~~i~~~~~~   86 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPF--NGLYQPQGLAVDGAGTVYVTDFNN-----RVVTLAAGS   86 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-CCC--CSCCSCCCEEECTTCCEEEEETTT-----EEEEECTTC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE-ecc--CCccCceEEEEcCCCCEEEeeeee-----ceeeeeeec
Confidence            457899999999776654 444 5555544332221 122  222344567788888888877665     777777655


Q ss_pred             CCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007          165 QSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (432)
Q Consensus       165 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  241 (432)
                      ++..+..........++++.+++.+.+.   ++.+..++...................+++.++++ ++++.  ..++.|
T Consensus        87 ~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~--~~~~~i  163 (260)
T d1rwia_          87 NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTD--TDNNRV  163 (260)
T ss_dssp             SCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEE--GGGTEE
T ss_pred             cceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC-Eeeec--cccccc
Confidence            5554444444566789999999887774   45677777544332211112223445788989876 44443  356788


Q ss_pred             EEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEE
Q 014007          242 RVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV  320 (432)
Q Consensus       242 ~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  320 (432)
                      ..++.+......+. ..-.....|++.++|+++++....+. |..++.... ....+... .-.....|+++++|.++++
T Consensus       164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~-i~~~~~~~~-~~~~~~~~-~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGST-TSTVLPFT-GLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTE-EEEECTTCS-CCEECCCC-SCCCEEEEEECTTCCEEEE
T ss_pred             cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCE-EEEEeCCCC-eEEEEccC-CCCCeEEEEEeCCCCEEEE
Confidence            89988775544443 44566789999999998888888888 888875433 33333211 2245789999999988777


Q ss_pred             EeCCCeEEEEEec
Q 014007          321 SSDKGTVHVFNLK  333 (432)
Q Consensus       321 ~~~dg~i~iwd~~  333 (432)
                      -..+++|+.++..
T Consensus       241 d~~~~rI~~i~~~  253 (260)
T d1rwia_         241 DRGNDRVVKLTSL  253 (260)
T ss_dssp             EGGGTEEEEECCC
T ss_pred             ECCCCEEEEEeCC
Confidence            6677777765543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.1e-09  Score=96.75  Aligned_cols=223  Identities=8%  Similarity=0.020  Sum_probs=138.0

Q ss_pred             EEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCC-CCCC---CCCeEEEEeCCCCc
Q 014007           92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQY---PLNKVMIWDDHQSR  167 (432)
Q Consensus        92 ~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~~---~~~~v~iwd~~~~~  167 (432)
                      .|.+++.++....++.|.+|++.+++..............+....++||+..++.... .+.|   ..+.+.++|+.+++
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            5888888776555667999999877654333222123345667788998876554321 1111   12789999999887


Q ss_pred             eeEEee---cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccC------------------CcceEEEec
Q 014007          168 CIGELS---FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIAN------------------PKGLCAVSQ  224 (432)
Q Consensus       168 ~~~~~~---~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~------------------~~~~~~~~~  224 (432)
                      ......   ....+....|+|||..++  .++.|++.+...+..++.......                  .-..+.|+|
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP  182 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence            544322   344566789999999888  489999999877665544322111                  113567999


Q ss_pred             CCCcEEEEeecCCCC---------------------------------cEEEEEccCCceeee-------eccCCceeEE
Q 014007          225 GVGSLVLVCPGLQKG---------------------------------QVRVEHYASKRTKFI-------MAHDSRIACF  264 (432)
Q Consensus       225 ~~~~~~~~~~g~~d~---------------------------------~i~i~d~~~~~~~~~-------~~~~~~i~~~  264 (432)
                      ||+.++++..  .+.                                 .+.++|+.++.....       ......+..+
T Consensus       183 Dgk~iaf~~~--D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~  260 (465)
T d1xfda1         183 DGTRLAYAAI--NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV  260 (465)
T ss_dssp             TSSEEEEEEE--ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE
T ss_pred             CCCeEEEEEe--cccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeee
Confidence            9998876541  122                                 344555544322211       1122347789


Q ss_pred             EEcCCCCEEEEEcCCC----ceEEEEECCCCceEEEEEeCCCcCce----EEEEECCCCCEE
Q 014007          265 ALTQDGQLLATSSTKG----TLVRIFNTLDGTLLQEVRRGADRAEI----YSLAFSSNAQWL  318 (432)
Q Consensus       265 ~~sp~~~~l~~~~~dg----~~i~vwd~~~~~~~~~~~~~~~~~~i----~~~~~s~~~~~l  318 (432)
                      .|+|++++++......    . |.++|..++++...+... ....|    ....|++||+.+
T Consensus       261 ~W~~d~~~~~~~~nR~q~~~~-i~~~d~~tg~~~~~~~e~-~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         261 KWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSE
T ss_pred             EEcCCCeEEEEEEccccccce-EEEEcCCCCcEEEEEEEc-CCceEeccCCceeEccCCCee
Confidence            9999998766543322    3 888999999887666532 22222    346899999843

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.13  E-value=1.2e-07  Score=82.26  Aligned_cols=230  Identities=9%  Similarity=0.005  Sum_probs=147.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (432)
Q Consensus        85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~  163 (432)
                      ...+..++|.++|+++++-..++ |..|+.++..... ...  ........+++.+++.++++...+. ...+.+...+.
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~-~~~--~~~~~p~gla~~~dG~l~va~~~~~-~~~~~i~~~~~  114 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-PFV--SHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATE  114 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEE--CSSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECT
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE-EEe--CCCCCeeEEEECCCCCEEEEecCCC-ccceeEEEEcC
Confidence            33457899999999766665444 7777766544332 112  2344567899999988777643210 00145666665


Q ss_pred             CCCceeEEee---cCCceEEEEEecCccEEEeC---------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          164 HQSRCIGELS---FRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       164 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      ..+.......   .......+++.++|.+.++|         +.+..++.. ++.+..+...-...+.++|+++++.+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWV  193 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeeccccceEEE
Confidence            5555444443   23457889999999877742         235555543 3333333232333457999999998877


Q ss_pred             EeecCCCCcEEEEEccCC--ceee-------eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC-
Q 014007          232 VCPGLQKGQVRVEHYASK--RTKF-------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-  301 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~--~~~~-------~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~-  301 (432)
                      +-  ...+.|..|+++..  ....       ..........|++..+|++.++....+. |.+|| .+|+.+.++.... 
T Consensus       194 ad--~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~-V~~~~-p~G~~l~~i~~P~~  269 (319)
T d2dg1a1         194 TE--TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFN-KRGYPIGQILIPGR  269 (319)
T ss_dssp             EE--GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEEC-TTSCEEEEEECTTG
T ss_pred             ec--ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE-EEEEC-CCCcEEEEEeCCCc
Confidence            64  35789999998652  1111       1111234678999999998888888888 99999 5899998887532 


Q ss_pred             ---CcCceEEEEECCCCCEEEEEeC
Q 014007          302 ---DRAEIYSLAFSSNAQWLAVSSD  323 (432)
Q Consensus       302 ---~~~~i~~~~~s~~~~~l~~~~~  323 (432)
                         +...+++++|.+++..+++...
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         270 DEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             GGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCcCceeeeEEEeCCCCEEEEEcC
Confidence               1235789999998877766543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.11  E-value=9.9e-08  Score=82.61  Aligned_cols=238  Identities=10%  Similarity=0.068  Sum_probs=148.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--------CcEEEEEcCCCeeEEEeecc-cCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007           86 PTLLHISFNQDHGCFAAGTD--------HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (432)
Q Consensus        86 ~~v~~~~~s~~~~~l~~~~~--------~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~  156 (432)
                      .....++|.++|+++++...        +.|..|+.++.......... ......-..+.+.+++..++.++..     +
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-----~   92 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-----L   92 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----T
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-----C
Confidence            34567899999998776543        23666776665543222111 0112235678899887544444433     6


Q ss_pred             eEEEEeCCCCceeEEee-cC----CceEEEEEecCccEEEeC------------------CeEEEEEcCCCeeeEEEeec
Q 014007          157 KVMIWDDHQSRCIGELS-FR----SEVRSVKLRRDRIIVVLE------------------QKIFVYNFADLKLLHQIETI  213 (432)
Q Consensus       157 ~v~iwd~~~~~~~~~~~-~~----~~v~~~~~~~~~~~~~~d------------------~~i~i~d~~~~~~~~~~~~~  213 (432)
                      .|..++...+....... ..    ...+.+++.++|.+.++|                  |.|+.++. +++....... 
T Consensus        93 ~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~-  170 (314)
T d1pjxa_          93 GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTA-  170 (314)
T ss_dssp             EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEE-
T ss_pred             eEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCC-
Confidence            78888866543222111 11    135789999999877642                  23544543 3443333322 


Q ss_pred             cCCcceEEEecCCC----cEEEEeecCCCCcEEEEEccCC-cee---eee---c-cCCceeEEEEcCCCCEEEEEcCCCc
Q 014007          214 ANPKGLCAVSQGVG----SLVLVCPGLQKGQVRVEHYASK-RTK---FIM---A-HDSRIACFALTQDGQLLATSSTKGT  281 (432)
Q Consensus       214 ~~~~~~~~~~~~~~----~~~~~~~g~~d~~i~i~d~~~~-~~~---~~~---~-~~~~i~~~~~sp~~~~l~~~~~dg~  281 (432)
                      ...-+.++|+++++    .++++  ....+.|..||+... .+.   .+.   . +......+++..+|++.++....+.
T Consensus       171 ~~~pNGi~~~~d~d~~~~~lyv~--d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~  248 (314)
T d1pjxa_         171 FQFPNGIAVRHMNDGRPYQLIVA--ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEE--ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             cceeeeeEECCCCCcceeEEEEE--eecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE
Confidence            22334688988765    34443  346788998887652 221   111   1 2234678999999998888777788


Q ss_pred             eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE-EEEeCCCeEEEEEecCC
Q 014007          282 LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL-AVSSDKGTVHVFNLKVN  335 (432)
Q Consensus       282 ~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~  335 (432)
                       |.+||...++.+..+...  ....++++|.||++.| ++.+.+|+|..+++...
T Consensus       249 -I~~~dp~~g~~~~~i~~p--~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         249 -IEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             -EEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             -EEEEeCCCCEEEEEEECC--CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence             999998888877777743  2578999999999754 55567888888887543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.05  E-value=3.4e-07  Score=79.16  Aligned_cols=241  Identities=10%  Similarity=0.067  Sum_probs=143.7

Q ss_pred             EEEEeeeCCeEEEecCCCCC--CCCCCeEEEEeCCCCceeEEee-----cCCceEEEEEecCccEEE-e--CCeEEEEEc
Q 014007          132 VVEMLFRCNILALVGGGPDP--QYPLNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRRDRIIVV-L--EQKIFVYNF  201 (432)
Q Consensus       132 v~~~~~~~~~~~~~s~~~d~--~~~~~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~-~--d~~i~i~d~  201 (432)
                      .-.++|.+++.++++.....  ....++|..||..++.......     ..+....++|.+++..++ .  .+.|..++.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            34567888887766533210  0112679999988776543322     123467899999986444 4  356888887


Q ss_pred             CCCeeeEEEeecc-----CCcceEEEecCCCcEEEEeecC-------------CCCcEEEEEccCCceeeeeccCCceeE
Q 014007          202 ADLKLLHQIETIA-----NPKGLCAVSQGVGSLVLVCPGL-------------QKGQVRVEHYASKRTKFIMAHDSRIAC  263 (432)
Q Consensus       202 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~-------------~d~~i~i~d~~~~~~~~~~~~~~~i~~  263 (432)
                      ..... ..+....     ...+.+++.++|+ +++.-.+.             ..|.|..++.+.. ...+...-...+.
T Consensus       100 ~g~~~-~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-~~~~~~~~~~pNG  176 (314)
T d1pjxa_         100 DGTFE-EIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDTAFQFPNG  176 (314)
T ss_dssp             TSCEE-ECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEEEESSEEE
T ss_pred             CCcEE-EEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecCc-eeEeeCCcceeee
Confidence            55432 2221111     1234688888875 44432111             1234544444333 3333333344578


Q ss_pred             EEEcCCCC-----EEEEEcCCCceEEEEECCCCceEEE---EEe--CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007          264 FALTQDGQ-----LLATSSTKGTLVRIFNTLDGTLLQE---VRR--GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (432)
Q Consensus       264 ~~~sp~~~-----~l~~~~~dg~~i~vwd~~~~~~~~~---~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  333 (432)
                      ++|+|++.     ++++-+..+. |+.||+.....+..   +..  .........+++..+|+++++....+.|.+||.+
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eEECCCCCcceeEEEEEeecccc-eEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence            99998764     4455566777 88888764433221   111  1122346789999999988887788999999987


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEE-EEecCCeEEEEEecC
Q 014007          334 VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV-ILGMDGSFYRCQFDP  411 (432)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~  411 (432)
                      .++.+                                   ..+..+....++++|.||++.|+ +.+.+|.|+.++++.
T Consensus       256 ~g~~~-----------------------------------~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         256 GGQPK-----------------------------------MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CBSCS-----------------------------------EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEE-----------------------------------EEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            76521                                   23444555688999999998654 555678888777643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.04  E-value=8e-07  Score=76.98  Aligned_cols=237  Identities=15%  Similarity=0.066  Sum_probs=147.3

Q ss_pred             EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe-------CCeEEEEEcCC
Q 014007          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-------EQKIFVYNFAD  203 (432)
Q Consensus       132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-------d~~i~i~d~~~  203 (432)
                      +-.++|++++.+.++....     +.|+.|+...++....+. .......+++.++|.++++       .+.+...+...
T Consensus        42 lEG~~~D~~G~Ly~~D~~~-----g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFE-----GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             EEEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cEeCEECCCCCEEEEECCC-----CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            3567888888776666565     899999987766555544 5667899999999987764       12355555544


Q ss_pred             CeeeEEEeec--cCCcceEEEecCCCcEEEEeecC----CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEE-EE
Q 014007          204 LKLLHQIETI--ANPKGLCAVSQGVGSLVLVCPGL----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA-TS  276 (432)
Q Consensus       204 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~----~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~  276 (432)
                      ..........  ......+++.++|+ +++.....    ..+.+..++.+.+.+..+...-...+.++|+|+++.|+ +-
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEec
Confidence            4433333221  12234678888886 44432111    12345555655555555544445567899999998664 44


Q ss_pred             cCCCceEEEEECCCC-ceEEEE-----EeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCC
Q 014007          277 STKGTLVRIFNTLDG-TLLQEV-----RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT  350 (432)
Q Consensus       277 ~~dg~~i~vwd~~~~-~~~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  350 (432)
                      +..+. |+.||+... ......     ...........|++..+|++.++....+.|.+||- .++.+            
T Consensus       196 ~~~~~-I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l------------  261 (319)
T d2dg1a1         196 TTANR-LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPI------------  261 (319)
T ss_dssp             GGGTE-EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEE------------
T ss_pred             ccCCc-eEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEE------------
Confidence            56677 999997642 222111     11111234678999999998888888999999995 45522            


Q ss_pred             CCCCCceeEeecccceeecceeeEEEEec------CCCceEEEEccCCCEEEEEecC----CeEEEEEecC
Q 014007          351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLV------EGSPYIVAFGHQKNTVVILGMD----GSFYRCQFDP  411 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~d----g~v~iw~~~~  411 (432)
                                             ..+..+      ...+++++|.+++..+++...+    +.-.||.++.
T Consensus       262 -----------------------~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         262 -----------------------GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             -----------------------EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             -----------------------EEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence                                   222222      2357899999988877766543    3344444544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.99  E-value=6.8e-08  Score=83.33  Aligned_cols=191  Identities=7%  Similarity=-0.041  Sum_probs=123.3

Q ss_pred             eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCC--
Q 014007          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL--  204 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~--  204 (432)
                      ..+..+++.+++.++++...+     ++|+.|+.. ++..........+.+++|.++|.++++   ++.+..++....  
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~-----~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEV-----GEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTT-----TEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcCCEEECCCCCEEEEeCCC-----CEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc
Confidence            356788999999999998877     999999844 554444457788999999999997774   567777776542  


Q ss_pred             eeeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee-----------ccCCceeEEEEcCCCCE
Q 014007          205 KLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-----------AHDSRIACFALTQDGQL  272 (432)
Q Consensus       205 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-----------~~~~~i~~~~~sp~~~~  272 (432)
                      ....... ........+++.++++ +++.  ...++.+..+|..........           ........+.++. +.+
T Consensus       102 ~~~~~~~~~~~~~~n~i~~~~~g~-~~v~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l  177 (302)
T d2p4oa1         102 TVETLLTLPDAIFLNGITPLSDTQ-YLTA--DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFL  177 (302)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSE-EEEE--ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEE
T ss_pred             ceeeccccCCccccceeEEccCCC-EEee--ccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cce
Confidence            2222111 1223345677888774 3332  235677877777765433221           1122345666653 335


Q ss_pred             EEEEcCCCceEEEEECCCCceE---EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007          273 LATSSTKGTLVRIFNTLDGTLL---QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (432)
Q Consensus       273 l~~~~~dg~~i~vwd~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  334 (432)
                      +++.+..+. |+.++.......   ..+.   .......++|+++|+++++...+++|..++...
T Consensus       178 ~~~~~~~~~-i~~~~~~~~~~~~~~~~~~---~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         178 YVSNTEKML-LLRIPVDSTDKPGEPEIFV---EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEEETTTTE-EEEEEBCTTSCBCCCEEEE---ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             eeecCCCCe-EEecccccccccccccccc---CCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence            556666777 888887654322   2222   123456799999999888877888888887654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.94  E-value=2.9e-06  Score=72.42  Aligned_cols=205  Identities=11%  Similarity=0.052  Sum_probs=137.0

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEeecc----CCcceEEEecCCCcEE
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIA----NPKGLCAVSQGVGSLV  230 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  230 (432)
                      +.|..||..+++. ..+.....+.++++.+++.+++ ....|.++|..+++.........    ...+.+.+.++|+ ++
T Consensus        40 ~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw  117 (295)
T d2ghsa1          40 RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LW  117 (295)
T ss_dssp             TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EE
T ss_pred             CEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EE
Confidence            7899999887754 4555677889999999987777 57789999998886543322111    1345677888886 34


Q ss_pred             EEeec--CCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCC------CceEEEEEeCC
Q 014007          231 LVCPG--LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLD------GTLLQEVRRGA  301 (432)
Q Consensus       231 ~~~~g--~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~------~~~~~~~~~~~  301 (432)
                      +....  ...+.-.+|.+..+....+...-.....++|+++++.|+.+ +..+. |+.|++..      ++....+....
T Consensus       118 ~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~-I~~~~~d~~~~~~~~~~~~~~~~~~  196 (295)
T d2ghsa1         118 IGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR-LMRVPLDARTGLPTGKAEVFIDSTG  196 (295)
T ss_dssp             EEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE-EEEEEBCTTTCCBSSCCEEEEECTT
T ss_pred             EEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccce-eeEeeecccccccccceEEEeccCc
Confidence            44321  12334566766666665555444566889999999866544 55666 88888642      12222222222


Q ss_pred             CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG  381 (432)
Q Consensus       302 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (432)
                      .......+++..+|++.++.-..+.|..||-+ ++.                                   +..+..+..
T Consensus       197 ~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~-----------------------------------~~~i~lP~~  240 (295)
T d2ghsa1         197 IKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNH-----------------------------------IARYEVPGK  240 (295)
T ss_dssp             SSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCE-----------------------------------EEEEECSCS
T ss_pred             ccccccceEEcCCCCEEeeeeCCCceEEecCC-CcE-----------------------------------eeEecCCCC
Confidence            34568899999999988877778899999954 442                                   345566666


Q ss_pred             CceEEEEc-cCCCEEEEEe
Q 014007          382 SPYIVAFG-HQKNTVVILG  399 (432)
Q Consensus       382 ~v~~~~~s-~~~~~l~~~~  399 (432)
                      .+++++|- +|.+.|++.+
T Consensus       241 ~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         241 QTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             BEEEEEEESTTSCEEEEEE
T ss_pred             ceEEEEEeCCCCCEEEEEE
Confidence            79999996 6777776554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.92  E-value=2e-07  Score=78.37  Aligned_cols=230  Identities=10%  Similarity=0.026  Sum_probs=138.6

Q ss_pred             eeEEEEeeeCCeEEEec-CCCCCCCCCCeEEEEeCCCCceeE-EeecCCceEEEEEecCccEEEe---CCeEEEEEcCCC
Q 014007          130 IGVVEMLFRCNILALVG-GGPDPQYPLNKVMIWDDHQSRCIG-ELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL  204 (432)
Q Consensus       130 ~~v~~~~~~~~~~~~~s-~~~d~~~~~~~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~  204 (432)
                      ..-..+++++++...++ ....     +.+..++........ ..........+++++++.+.++   ++.+++++-.+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSS-----CEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCC-----CEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc
Confidence            34567888888875554 4444     677777654332222 1223345678999999987775   335555554444


Q ss_pred             eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEcCCCceE
Q 014007          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLV  283 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg~~i  283 (432)
                      ..+..... ......+++.++++ ++++  ...+..+..++.......... ........++++++|+++++...++. |
T Consensus        89 ~~~~~~~~-~~~p~~iavd~~g~-i~v~--d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~-i  163 (260)
T d1rwia_          89 QTVLPFDG-LNYPEGLAVDTQGA-VYVA--DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-V  163 (260)
T ss_dssp             CEECCCCS-CCSEEEEEECTTCC-EEEE--EGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTE-E
T ss_pred             eeeeeeee-eeecccccccccce-eEee--ccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccc-c
Confidence            33322222 23345788888775 3333  234566777766654433322 22345678999999998888888888 9


Q ss_pred             EEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL  363 (432)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                      ..+|....... .+... .-.....|++.++|+++++....+.|..++.......                       ..
T Consensus       164 ~~~d~~~~~~~-~~~~~-~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-----------------------~~  218 (260)
T d1rwia_         164 VKLEAESNNQV-VLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-----------------------VL  218 (260)
T ss_dssp             EEECTTTCCEE-ECCCS-SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-----------------------EC
T ss_pred             cccccccceee-eeecc-ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-----------------------EE
Confidence            99997654433 33211 2356789999999998888878888888876543210                       00


Q ss_pred             cceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEE
Q 014007          364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYR  406 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i  406 (432)
                                  ....-.....|+++++|+++++-..+++|+.
T Consensus       219 ------------~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~  249 (260)
T d1rwia_         219 ------------PFTGLNTPLAVAVDSDRTVYVADRGNDRVVK  249 (260)
T ss_dssp             ------------CCCSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             ------------ccCCCCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence                        0001123568999999987776565665554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.88  E-value=3.1e-06  Score=72.16  Aligned_cols=215  Identities=10%  Similarity=0.049  Sum_probs=145.9

Q ss_pred             EEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007           89 LHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (432)
Q Consensus        89 ~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~  166 (432)
                      -+..|.+....|.-..  .+.|.-|+.++++... ..+    ...+..+++..++.++++..       ..+.++|..++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~----~~~~~~i~~~~dg~l~va~~-------~gl~~~d~~tg   88 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL----PFMGSALAKISDSKQLIASD-------DGLFLRDTATG   88 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC----SSCEEEEEEEETTEEEEEET-------TEEEEEETTTC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EEC----CCCcEEEEEecCCCEEEEEe-------CccEEeecccc
Confidence            3567887555444443  4448889988776432 222    34566788888887777654       56999999888


Q ss_pred             ceeEEee--c---CCceEEEEEecCccEEEe-------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007          167 RCIGELS--F---RSEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (432)
Q Consensus       167 ~~~~~~~--~---~~~v~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      +......  .   ...++.+.+.++|.+.+.       .+.-.+|.+..++....... ....+.++++++++.++++- 
T Consensus        89 ~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~d-  166 (295)
T d2ghsa1          89 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVD-  166 (295)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEE-
T ss_pred             eeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEee-
Confidence            7544333  1   235788999999987773       23556777767765544433 23345789999999887754 


Q ss_pred             cCCCCcEEEEEccCCc------eee---eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007          235 GLQKGQVRVEHYASKR------TKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (432)
Q Consensus       235 g~~d~~i~i~d~~~~~------~~~---~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~  305 (432)
                       +..+.|..|+++...      ...   ..+.......+++..+|++.++.-..+. |..|| .+++.+..+....  ..
T Consensus       167 -t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~-V~~~d-p~G~~~~~i~lP~--~~  241 (295)
T d2ghsa1         167 -TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYD-TDGNHIARYEVPG--KQ  241 (295)
T ss_dssp             -TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEEC-TTCCEEEEEECSC--SB
T ss_pred             -cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc-eEEec-CCCcEeeEecCCC--Cc
Confidence             457889999876421      111   1234556789999999998777767777 99999 6899999998542  56


Q ss_pred             eEEEEEC-CCCCEEEEEe
Q 014007          306 IYSLAFS-SNAQWLAVSS  322 (432)
Q Consensus       306 i~~~~~s-~~~~~l~~~~  322 (432)
                      +++++|- +|.+.|+..+
T Consensus       242 ~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         242 TTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEEEEEESTTSCEEEEEE
T ss_pred             eEEEEEeCCCCCEEEEEE
Confidence            8999995 6766665443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5.2e-07  Score=82.44  Aligned_cols=192  Identities=7%  Similarity=0.030  Sum_probs=118.0

Q ss_pred             EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee----cCCceEEEEEecCccEEEe------------CCeEEE
Q 014007          135 MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVL------------EQKIFV  198 (432)
Q Consensus       135 ~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~------------d~~i~i  198 (432)
                      ..|.+++.++.. ..+     |.|.+||+.+++....+.    ..-.+....|+||+++++.            .+.+.+
T Consensus        22 ~~W~~~~~~~~~-~~~-----g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          22 AKWISDTEFIYR-EQK-----GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CCBSSSSCBCCC-CSS-----SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             CEEeCCCcEEEE-eCC-----CcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEE
Confidence            346666655443 344     899999998887544443    2346778899999998762            357899


Q ss_pred             EEcCCCeeeEEE--eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee--ccCC---------------
Q 014007          199 YNFADLKLLHQI--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDS---------------  259 (432)
Q Consensus       199 ~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~---------------  259 (432)
                      +|+.+++.....  ......+....|+|+|+.++++.    ++.|.+.+..++....+.  +...               
T Consensus        96 ~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~----~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~  171 (465)
T d1xfda1          96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF----ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI  171 (465)
T ss_dssp             EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE----TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             EEccCCceeeccCccCCccccceeeeccCCceEEEEe----cceEEEEecCCCceEEEecccCcceeeccccchhhhhhh
Confidence            999887643321  12233455689999999987764    577888887664433222  1111               


Q ss_pred             --ceeEEEEcCCCCEEEEEcCCCce---------------------------------EEEEECCCCceEEEEEeC----
Q 014007          260 --RIACFALTQDGQLLATSSTKGTL---------------------------------VRIFNTLDGTLLQEVRRG----  300 (432)
Q Consensus       260 --~i~~~~~sp~~~~l~~~~~dg~~---------------------------------i~vwd~~~~~~~~~~~~~----  300 (432)
                        .-..+.|||||++||....|.+.                                 +.++|+.++.........    
T Consensus       172 ~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~  251 (465)
T d1xfda1         172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (465)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCc
Confidence              12477899999999987543221                                 344454433322111100    


Q ss_pred             CCcCceEEEEECCCCCEEEEEeC-C---CeEEEEEecCCC
Q 014007          301 ADRAEIYSLAFSSNAQWLAVSSD-K---GTVHVFNLKVNS  336 (432)
Q Consensus       301 ~~~~~i~~~~~s~~~~~l~~~~~-d---g~i~iwd~~~~~  336 (432)
                      ....-+..+.|++++++++.... +   ..|.++|..+++
T Consensus       252 ~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             cccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc
Confidence            01123678899999987665432 2   257788887776

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=3e-05  Score=63.73  Aligned_cols=225  Identities=14%  Similarity=0.185  Sum_probs=148.6

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEee-eCCeEEEecCCCCCCCCCCeEEEEeCCCC-c
Q 014007           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQS-R  167 (432)
Q Consensus        90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~~~~~~v~iwd~~~~-~  167 (432)
                      +.-.+|..+.||.-+...++|||+++.+......+.    ..|.-+.| +++.+.+++.        ..|+-|+++.. .
T Consensus        67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~~----e~VvfWkWis~~~L~lVT~--------taVYHW~~~g~s~  134 (327)
T d1utca2          67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT----DDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQ  134 (327)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECS----SCCCEEEESSSSEEEEECS--------SEEEEEESSSSCC
T ss_pred             hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcC----CCcEEEEecCCCEEEEEcC--------CceEEEcccCCCC
Confidence            456689999998887677999999998877544443    46677777 5566777776        68999998543 4


Q ss_pred             eeEEee-c----CCceEEEEEecCccEEEe----------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCC--Cc-E
Q 014007          168 CIGELS-F----RSEVRSVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV--GS-L  229 (432)
Q Consensus       168 ~~~~~~-~----~~~v~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~  229 (432)
                      +.+.+. |    ...|..-..+++.++++.          .|.+.+|..+. +.-+.+++|......+.+.-+.  .. +
T Consensus       135 P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf  213 (327)
T d1utca2         135 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLF  213 (327)
T ss_dssp             CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEE
T ss_pred             chhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEE
Confidence            566665 3    456777788888888772          57889999765 3445566665433333222111  11 1


Q ss_pred             EEEeecCCCCcEEEEEccCCce-------e--ee-e---ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007          230 VLVCPGLQKGQVRVEHYASKRT-------K--FI-M---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (432)
Q Consensus       230 ~~~~~g~~d~~i~i~d~~~~~~-------~--~~-~---~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~  296 (432)
                      .++.-+...+.+++.++.....       +  .+ .   ...+-.-++..++.-..+..-+.-|. |++||+.++.++..
T Consensus       214 ~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~-i~lyDleTgt~i~~  292 (327)
T d1utca2         214 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYM  292 (327)
T ss_dssp             EEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcE-EEEEEcccccEEEE
Confidence            2222233447889988876211       1  11 1   12344668888888888999999999 99999999999987


Q ss_pred             EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (432)
Q Consensus       297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  330 (432)
                      -+-.  ...|...+-+.+..-+++...+|.|.--
T Consensus       293 nRIs--~~~iF~~a~~~~~~Gi~~VNr~GqVl~v  324 (327)
T d1utca2         293 NRIS--GETIFVTAPHEATAGIIGVNRKGQVLSV  324 (327)
T ss_dssp             EECC--SSCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             eecC--CCceEEeccCCCCceEEEECCCCeEEEE
Confidence            7753  3566655555554555566678876543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.68  E-value=1.3e-06  Score=73.89  Aligned_cols=210  Identities=7%  Similarity=-0.015  Sum_probs=112.5

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe----C-----CeEEEEEcCCCeeeEEEee------ccCCcceE
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----E-----QKIFVYNFADLKLLHQIET------IANPKGLC  220 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d-----~~i~i~d~~~~~~~~~~~~------~~~~~~~~  220 (432)
                      +.|.+.|+..++..+...+.+.+...+|+|||+.++.    +     ..|.+++..+++..+....      ........
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~  100 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVA  100 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEE
T ss_pred             CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcccccccc
Confidence            6899999988876554447788899999999998883    2     2488888877765432111      11233567


Q ss_pred             EEecCCCcEEEEeecCC---CCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCc----------eEEEEE
Q 014007          221 AVSQGVGSLVLVCPGLQ---KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT----------LVRIFN  287 (432)
Q Consensus       221 ~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~----------~i~vwd  287 (432)
                      .|+|+++.+++......   ...+...+.........  +........+.+.+..++....+..          ...+..
T Consensus       101 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (281)
T d1k32a2         101 GFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL--NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIE  178 (281)
T ss_dssp             EECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC--CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEE
T ss_pred             ccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe--cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeee
Confidence            89999998776542211   22344445544443332  2333334444444444443332211          022222


Q ss_pred             CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC--CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD--KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK  365 (432)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (432)
                      ...........   .........++++.. +.....  ...|+++|+.+.+..                           
T Consensus       179 ~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~---------------------------  227 (281)
T d1k32a2         179 VNSGAFKKIVD---MSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLR---------------------------  227 (281)
T ss_dssp             EETTEEEEEEC---CSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCE---------------------------
T ss_pred             ccccceeeccC---Cccccceeeeecccc-ceecccccccceEEEeCCCCceE---------------------------
Confidence            22222222222   223445556665532 223333  335777777665521                           


Q ss_pred             eeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007          366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF  409 (432)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~  409 (432)
                               .+..+ .......|+|||+.|+.. .+|.|+++++
T Consensus       228 ---------~lt~~-~~~~~~~~SpDG~~I~f~-~~~~l~~~d~  260 (281)
T d1k32a2         228 ---------KHTSF-TDYYPRHLNTDGRRILFS-KGGSIYIFNP  260 (281)
T ss_dssp             ---------ECCCC-CSSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred             ---------EeecC-CCcccccCcCCCCEEEEE-eCCEEEEEEC
Confidence                     11111 123345799999998864 4677766544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.68  E-value=3.8e-06  Score=70.81  Aligned_cols=231  Identities=7%  Similarity=-0.025  Sum_probs=129.5

Q ss_pred             EEcCC--CCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCC-CCCCCCCeEEEEeCCCCce
Q 014007           92 SFNQD--HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKVMIWDDHQSRC  168 (432)
Q Consensus        92 ~~s~~--~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~v~iwd~~~~~~  168 (432)
                      ..+||  |+.++...++.|.+.++++++..   .+. .+........|+||+..|+-... +.......|.+++...++.
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~---~Lt-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR---KIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEE---EEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEE---EEe-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            45799  99998888777888899877654   232 35566788899999987774321 1000113588888877765


Q ss_pred             eEEeec-------CCceEEEEEecCccEEEe---------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007          169 IGELSF-------RSEVRSVKLRRDRIIVVL---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (432)
Q Consensus       169 ~~~~~~-------~~~v~~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      .+....       ........|+|+++.++.         ...+...+...+.....   ..... ...+.+++...+..
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~  156 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPA-THILFADGRRVIGR  156 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSC-SEEEEETTEEEEEE
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCcc-ceeeecCCCeEEEe
Confidence            543222       234567889999988873         12355666554443221   12222 23445555444333


Q ss_pred             eecCC---------CCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCC-ceEEEEECCCCceEEEEEeCCC
Q 014007          233 CPGLQ---------KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRRGAD  302 (432)
Q Consensus       233 ~~g~~---------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~~i~vwd~~~~~~~~~~~~~~~  302 (432)
                      .....         .....+.............+........++++.. +.....++ ..|.++|+.+++... +...  
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~-lt~~--  232 (281)
T d1k32a2         157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLRK-HTSF--  232 (281)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCEE-CCCC--
T ss_pred             eccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecccc-ceecccccccceEEEeCCCCceEE-eecC--
Confidence            21110         0112222222233333334444555566666543 23333222 228888987666543 3321  


Q ss_pred             cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (432)
Q Consensus       303 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  336 (432)
                       .......|+|||+.|+.. .++.|+++|+.+++
T Consensus       233 -~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         233 -TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             -CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred             -CCcccccCcCCCCEEEEE-eCCEEEEEECCCCC
Confidence             122234689999988764 47889999998887

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=7.1e-05  Score=61.45  Aligned_cols=252  Identities=10%  Similarity=0.119  Sum_probs=158.9

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (432)
                      |.|.|+.......++...  -...+    .+|....++--+.      .++.++|+++.+.++.+....+|.--.|-.+.
T Consensus        47 VvIidl~n~~~~~Rrpi~--AdsAI----MhP~~~IiALrag------~~LQiFnletK~klks~~~~e~VvfWkWis~~  114 (327)
T d1utca2          47 VVIIDMNDPSNPIRRPIS--ADSAI----MNPASKVIALKAG------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN  114 (327)
T ss_dssp             EEEEETTSTTSCEEEECC--CSEEE----ECSSSSEEEEEET------TEEEEEETTTTEEEEEEECSSCCCEEEESSSS
T ss_pred             EEEEECCCCCcceecccc--hhhhh----cCCCCcEEEEecC------CeEEEEehhHhhhhceEEcCCCcEEEEecCCC
Confidence            888998765544444443  22222    2344433332222      78999999999999999988899888887766


Q ss_pred             cEEE-eCCeEEEEEcCC-CeeeEEEeeccC----CcceEEEecCCCcEEEEeec----CCCCcEEEEEccCCceeeeecc
Q 014007          188 IIVV-LEQKIFVYNFAD-LKLLHQIETIAN----PKGLCAVSQGVGSLVLVCPG----LQKGQVRVEHYASKRTKFIMAH  257 (432)
Q Consensus       188 ~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g----~~d~~i~i~d~~~~~~~~~~~~  257 (432)
                      .+.. ++..|+-|+++. ..+.+.++-|..    .+-....+++.+.+++..-.    .-.|.+.+|..+.+..+.+.+|
T Consensus       115 ~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGh  194 (327)
T d1utca2         115 TVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH  194 (327)
T ss_dssp             EEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCS
T ss_pred             EEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccce
Confidence            6554 699999999954 245555554432    22234556666666554221    2347889999998888888888


Q ss_pred             CCceeEEEEcCCC---CEEEEEc---CCCceEEEEECCCCc--------eEEEEEe--CCCcCceEEEEECCCCCEEEEE
Q 014007          258 DSRIACFALTQDG---QLLATSS---TKGTLVRIFNTLDGT--------LLQEVRR--GADRAEIYSLAFSSNAQWLAVS  321 (432)
Q Consensus       258 ~~~i~~~~~sp~~---~~l~~~~---~dg~~i~vwd~~~~~--------~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~  321 (432)
                      ...-..+.+.-+.   .+++.+.   ..+. ++|-++....        ....+..  ....+-..++..|+.-..+..-
T Consensus       195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~k-LhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         195 AASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             EEEEEEECCTTCSSCEEEEEEEEEETTEEE-EEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeEEEEcCCCCCCceEEEEEECCCCCcE-EEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence            7766665553221   2333322   2245 8888886521        1111111  1122456788888888899999


Q ss_pred             eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecC
Q 014007          322 SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD  401 (432)
Q Consensus       322 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  401 (432)
                      +.-|.|++||++++.+                                   +..-+...+.|...+-..+..=++....+
T Consensus       274 TK~G~i~lyDleTgt~-----------------------------------i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~  318 (327)
T d1utca2         274 TKYGYIHLYDLETGTC-----------------------------------IYMNRISGETIFVTAPHEATAGIIGVNRK  318 (327)
T ss_dssp             ETTSEEEEEETTTCCE-----------------------------------EEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred             ecCcEEEEEEcccccE-----------------------------------EEEeecCCCceEEeccCCCCceEEEECCC
Confidence            9999999999999984                                   23334444555555545555556666677


Q ss_pred             CeEEEE
Q 014007          402 GSFYRC  407 (432)
Q Consensus       402 g~v~iw  407 (432)
                      |.|..-
T Consensus       319 GqVl~v  324 (327)
T d1utca2         319 GQVLSV  324 (327)
T ss_dssp             SEEEEE
T ss_pred             CeEEEE
Confidence            776643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.36  E-value=0.00024  Score=61.62  Aligned_cols=239  Identities=12%  Similarity=0.105  Sum_probs=144.5

Q ss_pred             eEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cC---------------------------------------Cce--
Q 014007          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR---------------------------------------SEV--  178 (432)
Q Consensus       141 ~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~---------------------------------------~~v--  178 (432)
                      ...+.+|+..     |.|+++-+-+++.+..+. +.                                       +..  
T Consensus        13 yy~f~SgG~s-----G~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HH   87 (459)
T d1fwxa2          13 YYGFWSSGQS-----GEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH   87 (459)
T ss_dssp             EEEEECCBTT-----CEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCC
T ss_pred             EEEEeeCCcc-----ceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCC
Confidence            4456777777     899999888777666543 10                                       001  


Q ss_pred             EEEEEec---CccEEEe----CCeEEEEEcCCCeeeEEEeec-cCCcceEEEecCCCcEEEEeecCC------C------
Q 014007          179 RSVKLRR---DRIIVVL----EQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQ------K------  238 (432)
Q Consensus       179 ~~~~~~~---~~~~~~~----d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~------d------  238 (432)
                      -.+.+..   ||++++.    +++|.+.|+++.+..+.+... ......+...++++..++++.+..      |      
T Consensus        88 P~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          88 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             CcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            1344443   7888884    679999999999887655432 233445677777777777764421      1      


Q ss_pred             -----CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCc--------------e-----------------
Q 014007          239 -----GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--------------L-----------------  282 (432)
Q Consensus       239 -----~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~--------------~-----------------  282 (432)
                           +.+.++|..+.++.....-......+.++++|+++++.+.+..              .                 
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 3466778877655443333456778999999999988764321              0                 


Q ss_pred             ------EEEEECCCC---ceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007          283 ------VRIFNTLDG---TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLP  352 (432)
Q Consensus       283 ------i~vwd~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  352 (432)
                            +.+-|.++.   ..++.+..+   .....+.++|||+++++++ .+.++.|+|++....+-...          
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVp---KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~----------  314 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN----------  314 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC----------
T ss_pred             cEEeCCceeecccccCCcceeEEEecC---CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhccc----------
Confidence                  344444321   233334422   3456789999999998877 78999999997643210000          


Q ss_pred             CCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007          353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP  411 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~  411 (432)
                               .-+    +.--.+.....- .-...+|..+|+-..+---|..|--|+++.
T Consensus       315 ---------~~~----~~~~~~e~elgl-gPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         315 ---------ADP----RSAVVAEPELGL-GPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             ---------C-G----GGGEEECCBCCS-CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ---------CCc----cccEEeecccCc-CccccccCCCceEEEEeeccceEEEEecch
Confidence                     000    000000011111 133568888886555556799999999854

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.29  E-value=9.1e-05  Score=64.24  Aligned_cols=224  Identities=13%  Similarity=0.103  Sum_probs=141.4

Q ss_pred             EEEEcC---CCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEee--eCCeEEEecCCCCCC--------C-
Q 014007           90 HISFNQ---DHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQ--------Y-  153 (432)
Q Consensus        90 ~~~~s~---~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~--------~-  153 (432)
                      .+++..   ||++|.+..  +..|.+-|+++.+......+.  ....+..+..  .++..+++..+.+..        . 
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP--n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~  166 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  166 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecC--CCCCCceeecccCCCeEEEEccCccccccCCCCcccc
Confidence            456654   899998887  333999999998876444554  3333444433  456666665444210        0 


Q ss_pred             ----CCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---C---------------CeEEEEEc----------
Q 014007          154 ----PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---E---------------QKIFVYNF----------  201 (432)
Q Consensus       154 ----~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d---------------~~i~i~d~----------  201 (432)
                          -.+.+.++|..+.+....+...+....+.++++|+++++   +               ..+.++++          
T Consensus       167 d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         167 DVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             CGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             chhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                014577899999988888887777888999999988873   1               12334443          


Q ss_pred             -------------CCC---eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC------c------eee
Q 014007          202 -------------ADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK------R------TKF  253 (432)
Q Consensus       202 -------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~------~------~~~  253 (432)
                                   ++.   ..+..+..... ...+.++|||+++++  +|..+..+.++|++.-      .      +..
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVpKs-PHGV~vSPDGKyi~V--aGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~  323 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHLCV--AGKLSPTVTVLDVTRFDAVFYENADPRSAVVA  323 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEESS-CCCEEECTTSSEEEE--ECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEE
T ss_pred             CcEEeCCceeecccccCCcceeEEEecCCC-CCceEECCCCCEEEE--eCCcCCcEEEEEehhhhhhhcccCCccccEEe
Confidence                         221   12223333333 346899999997654  4678999999999751      0      111


Q ss_pred             eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC----------CceEEEEEeCCCcCceEEE------EECCCCCE
Q 014007          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTLLQEVRRGADRAEIYSL------AFSSNAQW  317 (432)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~----------~~~~~~~~~~~~~~~i~~~------~~s~~~~~  317 (432)
                      .....-.....+|+..|....+.-.|.. |.-|++..          ...+..+..+   ..+-.+      ...|||++
T Consensus       324 e~elglgPLht~fd~~g~aytslfids~-v~kw~~~~~~~~~~~~~~~~v~~k~~v~---y~~gh~~~~~g~t~~~dgk~  399 (459)
T d1fwxa2         324 EPELGLGPLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVH---YQPGHLKTVMGETLDATNDW  399 (459)
T ss_dssp             CCBCCSCEEEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECS---SCEEEEEETTTTSTTCCSSE
T ss_pred             ecccCcCccccccCCCceEEEEeeccce-EEEEecchhhhhhccccCCcceeccccc---cCCCCCccCcCCcCCCCCCE
Confidence            1122334566789999977777788998 99999843          2455666543   222233      24689999


Q ss_pred             EEEEe
Q 014007          318 LAVSS  322 (432)
Q Consensus       318 l~~~~  322 (432)
                      |++..
T Consensus       400 l~~~n  404 (459)
T d1fwxa2         400 LVCLS  404 (459)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            98875

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=0.00093  Score=55.16  Aligned_cols=228  Identities=7%  Similarity=-0.053  Sum_probs=138.7

Q ss_pred             CCEEEEEcCCcEEEEEcCCCeeE---EEeecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCCCceeEEe
Q 014007           97 HGCFAAGTDHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (432)
Q Consensus        97 ~~~l~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~  172 (432)
                      |.+|..+..+.|+-.+++.....   ....+. .+...+..++|+... ..+.+....     +.|+..++..+.....+
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~-~~~~~~~~ld~D~~~~~iywsd~~~-----~~I~~~~l~g~~~~~v~   74 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTII   74 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEE
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccc-cCCCcEEEEEEEeCCCEEEEEECCC-----CeEEEEEcccCCcEEEE
Confidence            45677776667777777644321   001111 244456778887543 334443444     78999888765544444


Q ss_pred             e-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007          173 S-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (432)
Q Consensus       173 ~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~  247 (432)
                      . ....+.++++..-+..+. +   .+.|.+.++........+.........++++|....++....+...+.|...+++
T Consensus        75 ~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d  154 (263)
T d1npea_          75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (263)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             EeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC
Confidence            3 346788999986444443 3   5689999986544322233333456689999998888776544334456666776


Q ss_pred             CCceeeee-ccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE-eCC
Q 014007          248 SKRTKFIM-AHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS-SDK  324 (432)
Q Consensus       248 ~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d  324 (432)
                      ......+. ..-.....+++.+.++.|..+ ...+. |...|+........+.+.   ....+|++.  +.+|... ...
T Consensus       155 G~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~-I~~~~~~g~~~~~v~~~~---~~P~~lav~--~~~lYwtd~~~  228 (263)
T d1npea_         155 GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKT  228 (263)
T ss_dssp             SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTT
T ss_pred             CCCceeeeeecccccceEEEeecCcEEEEEeCCCCE-EEEEECCCCCeEEEECCC---CCcEEEEEE--CCEEEEEECCC
Confidence            65444433 333567899999877777555 45667 999998655444344432   234678775  3445444 467


Q ss_pred             CeEEEEEecCCC
Q 014007          325 GTVHVFNLKVNS  336 (432)
Q Consensus       325 g~i~iwd~~~~~  336 (432)
                      +.|...|..+++
T Consensus       229 ~~I~~~~~~~g~  240 (263)
T d1npea_         229 NSVIAMDLAISK  240 (263)
T ss_dssp             TEEEEEETTTTE
T ss_pred             CEEEEEECCCCc
Confidence            888888888766

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.09  E-value=0.0039  Score=57.59  Aligned_cols=142  Identities=11%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             CeEEEEeCCCCceeEEeec-----CCceEEEEEecCccEEE-e-------CCeEEEEEcCCCeeeEEEeeccC-------
Q 014007          156 NKVMIWDDHQSRCIGELSF-----RSEVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIAN-------  215 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~-------  215 (432)
                      +.+.-.|.++|+.+.....     ...++.--.-.++.+++ .       .|.|+-+|+++|+.+..+.....       
T Consensus       125 g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~  204 (571)
T d2ad6a1         125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLA  204 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred             CcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccc
Confidence            8999999999998877651     11222211222344444 2       67899999999998877643210       


Q ss_pred             ------------------------------Cc-ceEEEecCCCcEEEEeecC-------------CCCcEEEEEccCCce
Q 014007          216 ------------------------------PK-GLCAVSQGVGSLVLVCPGL-------------QKGQVRVEHYASKRT  251 (432)
Q Consensus       216 ------------------------------~~-~~~~~~~~~~~~~~~~~g~-------------~d~~i~i~d~~~~~~  251 (432)
                                                    .+ ...++.+....+++.+...             ....+...|.+++++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~  284 (571)
T d2ad6a1         205 KDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA  284 (571)
T ss_dssp             TTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred             ccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhh
Confidence                                          01 2246667766655544211             024566778887665


Q ss_pred             ee-eec--cC-------CceeEEEEcCCCC---EEEEEcCCCceEEEEECCCCceEEEEE
Q 014007          252 KF-IMA--HD-------SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVR  298 (432)
Q Consensus       252 ~~-~~~--~~-------~~i~~~~~sp~~~---~l~~~~~dg~~i~vwd~~~~~~~~~~~  298 (432)
                      .- ++.  |.       .......+..+++   .++.++.+|. ++++|..+|+.+...+
T Consensus       285 ~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~-l~vlDr~tG~~i~~~~  343 (571)
T d2ad6a1         285 KWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred             eecccccCccccccccccccceeeeeccCccccceeeccccce-EEEEecCCCcEeeeec
Confidence            42 221  11       1111122222443   5678889999 9999999999876543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.99  E-value=0.0033  Score=58.03  Aligned_cols=179  Identities=9%  Similarity=0.049  Sum_probs=110.4

Q ss_pred             CeEEEEeCCCCceeEEeecC-------------------------------Cce-EEEEEecCccEEEe-----------
Q 014007          156 NKVMIWDDHQSRCIGELSFR-------------------------------SEV-RSVKLRRDRIIVVL-----------  192 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~-------------------------------~~v-~~~~~~~~~~~~~~-----------  192 (432)
                      |.|+-+|.++|+.+..+...                               ..+ ..+++.+...++..           
T Consensus       178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~  257 (560)
T d1kv9a2         178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNRE  257 (560)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred             ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccc
Confidence            78999999999998887510                               011 12455555444431           


Q ss_pred             -----------CCeEEEEEcCCCeeeEEEeeccCCcc---------eEEEecCCCcEEEEeecCCCCcEEEEEccCCcee
Q 014007          193 -----------EQKIFVYNFADLKLLHQIETIANPKG---------LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK  252 (432)
Q Consensus       193 -----------d~~i~i~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~  252 (432)
                                 ...|.-.|+++++....++...+.+.         .+.+..+++..-++..+..+|.+.++|-.++++.
T Consensus       258 ~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         258 VRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence                       13577889999988777665443322         2334445554434444568999999998875432


Q ss_pred             eeec--c---------------------------------CC--ceeEEEEcCCCCEEEEEcC-----------------
Q 014007          253 FIMA--H---------------------------------DS--RIACFALTQDGQLLATSST-----------------  278 (432)
Q Consensus       253 ~~~~--~---------------------------------~~--~i~~~~~sp~~~~l~~~~~-----------------  278 (432)
                      ....  .                                 .+  .-...+++|+..+++....                 
T Consensus       338 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~  417 (560)
T d1kv9a2         338 SAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRK  417 (560)
T ss_dssp             EEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCS
T ss_pred             ccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccccccc
Confidence            1100  0                                 00  0113456676666655432                 


Q ss_pred             -------------------CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          279 -------------------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       279 -------------------dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                                         .|. |.-||+.+++.+-.+....   ...+-.++-.+.+++.|+.||.++.+|.++++.+
T Consensus       418 ~~~~~~~~~~~~~~p~~~~~G~-l~A~D~~tGk~~W~~~~~~---~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         418 AFNTAAGFADATDVPAAVVSGA-LLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             SCCCSSCGGGCCCCCGGGCEEE-EEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccccCcccccCCCCcccccc-eEEEeCCCCeEeeeccCCC---CCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence                               245 7789999999988877542   2222223335667888999999999999999843

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=0.0034  Score=51.76  Aligned_cols=226  Identities=9%  Similarity=-0.065  Sum_probs=137.7

Q ss_pred             EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCc---eeEE-ee
Q 014007           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSR---CIGE-LS  173 (432)
Q Consensus        99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~---~~~~-~~  173 (432)
                      +|..+..+.|+-.++++.....  .+.  ....+.++.|+.... ...+-...     +.|...++....   .... +.
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~--~~~--~~~~~~~id~d~~~~~lYw~D~~~-----~~I~~~~l~~~~~~~~~~~~~~   73 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTS--LIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS   73 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEE--EEC--SCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEEC
T ss_pred             EEEEECCCeEEEEECCCCccee--eeC--CCCceEEEEEEeCCCEEEEEECCC-----CEEEEEEecCCCCCcceEEEEe
Confidence            5666766678888987655432  222  344567888876433 33333333     677777664322   1112 22


Q ss_pred             -cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC
Q 014007          174 -FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (432)
Q Consensus       174 -~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~  248 (432)
                       ....+.++++...+..+. +   .+.|.+.++........+.........++++|....++.+-.+ ..+.|...+++.
T Consensus        74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~dG  152 (266)
T d1ijqa1          74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG  152 (266)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS
T ss_pred             CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEeccCC
Confidence             345677888886554444 2   5689999987655444444444555678999987777766433 556788888887


Q ss_pred             Cceeeeec-cCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe
Q 014007          249 KRTKFIMA-HDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT  326 (432)
Q Consensus       249 ~~~~~~~~-~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  326 (432)
                      .....+.. .-.....+++++.++.|..+ ...+. |...|+........+..........+|++. ++..+.+-..++.
T Consensus       153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~-I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~  230 (266)
T d1ijqa1         153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  230 (266)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             CceecccccccceeeEEEeeccccEEEEecCCcCE-EEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCe
Confidence            66555543 34567899999877766655 55667 999998655544444432222346678876 3344444447788


Q ss_pred             EEEEEecCCC
Q 014007          327 VHVFNLKVNS  336 (432)
Q Consensus       327 i~iwd~~~~~  336 (432)
                      |+..+..++.
T Consensus       231 I~~~~~~~g~  240 (266)
T d1ijqa1         231 IFSANRLTGS  240 (266)
T ss_dssp             EEEEETTTCC
T ss_pred             EEEEECCCCc
Confidence            8888877665

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.94  E-value=0.0064  Score=56.23  Aligned_cols=53  Identities=4%  Similarity=0.048  Sum_probs=38.5

Q ss_pred             EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      |.-||+.+++.+-.++..   .+...-..+-.|.++++|+.||.++.||.++++.+
T Consensus       459 l~AiD~~tGk~~W~~~~~---~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         459 LLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEeCCCCCceEeeecCC---CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence            667888888888877743   22222222336778888999999999999999843

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.80  E-value=0.0036  Score=57.83  Aligned_cols=141  Identities=8%  Similarity=-0.018  Sum_probs=84.6

Q ss_pred             CeEEEEEcCCCeeeEEEeeccCCcc---------eEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee-ec-------
Q 014007          194 QKIFVYNFADLKLLHQIETIANPKG---------LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-MA-------  256 (432)
Q Consensus       194 ~~i~i~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~-------  256 (432)
                      ..+.-.|+++|+.+..++...+.+.         ...+..+++...++.....+|.+.++|..+++.... ..       
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            4688889999998887765433222         233444555433333345789999998777543210 00       


Q ss_pred             ------------------------------cCCc--eeEEEEcCCCCEEEEEcCC-------------------------
Q 014007          257 ------------------------------HDSR--IACFALTQDGQLLATSSTK-------------------------  279 (432)
Q Consensus       257 ------------------------------~~~~--i~~~~~sp~~~~l~~~~~d-------------------------  279 (432)
                                                    ..+.  -...+++|+..+++....+                         
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                                          0000  0125667776666543322                         


Q ss_pred             ------------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          280 ------------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       280 ------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                                  |. |.-+|+.+++.+-+.....   ...+-..+-.+.++++++.||.++.+|.++++.+
T Consensus       432 ~~~~~~~~~~~~G~-l~AiD~~TG~~~W~~~~~~---~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EECTTSTTSCCCEE-EEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccCCcccCCccc-EEEeccCCCceeeEcCCCC---CCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence                        34 7778888888887776431   1111112224567778999999999999999843

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.80  E-value=0.013  Score=53.92  Aligned_cols=142  Identities=13%  Similarity=0.144  Sum_probs=84.6

Q ss_pred             CeEEEEeCCCCceeEEeecCCc-----eEEEEEecCccEEEe--------CCeEEEEEcCCCeeeEEEeeccC-------
Q 014007          156 NKVMIWDDHQSRCIGELSFRSE-----VRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIAN-------  215 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~~-------  215 (432)
                      +.|.-.|..+|+.+........     +...-.--++.+++.        .|.|+-+|.++|+.+-.+.....       
T Consensus       127 g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~  206 (560)
T d1kv9a2         127 GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYE  206 (560)
T ss_dssp             SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCS
T ss_pred             CEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcc
Confidence            8999999999999887762211     111111124444441        46899999999999887753210       


Q ss_pred             -----------------------C-cceEEEecCCCcEEEEeecC----------------CCCcEEEEEccCCceeee-
Q 014007          216 -----------------------P-KGLCAVSQGVGSLVLVCPGL----------------QKGQVRVEHYASKRTKFI-  254 (432)
Q Consensus       216 -----------------------~-~~~~~~~~~~~~~~~~~~g~----------------~d~~i~i~d~~~~~~~~~-  254 (432)
                                             . =...++.+..+.+++.++..                ....|.-.|.+++++.-. 
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~  286 (560)
T d1kv9a2         207 HPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY  286 (560)
T ss_dssp             SHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred             ccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEE
Confidence                                   0 11256677776666544210                024566677777665432 


Q ss_pred             e--ccCC-------ceeEEEEcCCC---CEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007          255 M--AHDS-------RIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (432)
Q Consensus       255 ~--~~~~-------~i~~~~~sp~~---~~l~~~~~dg~~i~vwd~~~~~~~~~~~  298 (432)
                      +  .|+.       ...-+.+..+|   ..++.+..+|. ++++|..+++++....
T Consensus       287 Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~-~~~lDr~tG~~i~~~~  341 (560)
T d1kv9a2         287 QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAEK  341 (560)
T ss_dssp             ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred             eccccccccccccceeeeeeeecCCceeeeeeecCccce-EEEEecCCCccccccc
Confidence            2  1221       11112222244   36777889999 9999999999887655

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=0.0064  Score=49.90  Aligned_cols=217  Identities=6%  Similarity=-0.069  Sum_probs=128.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-C-CcEEEEEcCCCeeEEEeecccCcceeEEEEeee--CCeEEEecCCCCCCCCCCeE
Q 014007           83 SPPPTLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKV  158 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~-~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~~~~~~v  158 (432)
                      .+...+..|+|...++.|..+. . +.|+..+++.......  +. ........++++  .+..+.+-. ..     +.|
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v--~~-~~~~~p~~iAvD~~~~~lY~~d~-~~-----~~I  103 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI--IR-QDLGSPEGIALDHLGRTIFWTDS-QL-----DRI  103 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE--EC-TTCCCEEEEEEETTTTEEEEEET-TT-----TEE
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEE--EE-eccccccEEEEeccCCeEEEecc-CC-----CEE
Confidence            3445678899998888777665 3 3388878775544321  21 122345566665  444444433 33     799


Q ss_pred             EEEeCCCCceeEEee-cCCceEEEEEecCccEEE-eC---C--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LE---Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (432)
Q Consensus       159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d---~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      .+.++........+. ....+..+++.|...++. ++   +  .|...++............-.....+++++.++.++.
T Consensus       104 ~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         104 EVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             EEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEE
Confidence            999987554433333 346789999998766555 32   2  3554555433222222222223357889888888877


Q ss_pred             EeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (432)
Q Consensus       232 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~  311 (432)
                      +-  ...+.|...+++......+........+|++. ++.+..+-...+. |...|..+++.+..+... .......++.
T Consensus       184 ~d--~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~-I~~~~~~~g~~~~~~~~~-~~~~~~gi~v  258 (263)
T d1npea_         184 VD--AGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPH-KQTRLYGITI  258 (263)
T ss_dssp             EE--TTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTE-EEEEETTTTEEEEEECCS-SCCCCCCEEE
T ss_pred             Ee--CCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCE-EEEEECCCCccceEECCC-CCCCcceEEE
Confidence            64  34688999999886554443322334678775 4444455556667 999999888887766532 2233445554


Q ss_pred             CC
Q 014007          312 SS  313 (432)
Q Consensus       312 s~  313 (432)
                      .+
T Consensus       259 ~~  260 (263)
T d1npea_         259 AL  260 (263)
T ss_dssp             EC
T ss_pred             eC
Confidence            43

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.68  E-value=0.02  Score=52.75  Aligned_cols=312  Identities=9%  Similarity=0.067  Sum_probs=153.2

Q ss_pred             CCCEEEEEcCCcEEEEEcCCCeeEEEeecccCc--------ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG--------GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (432)
Q Consensus        96 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~  167 (432)
                      +|.++++..++.|.-+|.++++.+.........        ...-..+.+..+..++.+.  +     +.+.-.|..+|+
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~--~-----g~l~alda~tG~  149 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--D-----GRLIALDAATGK  149 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--T-----SEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec--c-----cceeeecccccc
Confidence            344443333455666777777666543321000        0111123334444444443  3     889999999999


Q ss_pred             eeEEee-cCCc---e--EEEEEecCccEEE-e-------CCeEEEEEcCCCeeeEEEeeccC------------------
Q 014007          168 CIGELS-FRSE---V--RSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIAN------------------  215 (432)
Q Consensus       168 ~~~~~~-~~~~---v--~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~------------------  215 (432)
                      .+.... ....   +  ...-.-.++.+++ .       .|.|+-+|.++|+.+..+.....                  
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~  229 (573)
T d1kb0a2         150 EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (573)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             ceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCccccccccccc
Confidence            887665 1111   1  1111112444444 1       56899999999999877643210                  


Q ss_pred             -------------Cc-ceEEEecCCCcEEEEeecC----------------CCCcEEEEEccCCceeeee---ccC----
Q 014007          216 -------------PK-GLCAVSQGVGSLVLVCPGL----------------QKGQVRVEHYASKRTKFIM---AHD----  258 (432)
Q Consensus       216 -------------~~-~~~~~~~~~~~~~~~~~g~----------------~d~~i~i~d~~~~~~~~~~---~~~----  258 (432)
                                   .+ ...++.+....+++.....                ....|...|.+++++.-..   .|.    
T Consensus       230 ~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~  309 (573)
T d1kb0a2         230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY  309 (573)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             CCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccc
Confidence                         01 1245555555554433110                1124555666665554321   111    


Q ss_pred             ---CceeEEEEcCCC---CEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-----------------------------
Q 014007          259 ---SRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-----------------------------  303 (432)
Q Consensus       259 ---~~i~~~~~sp~~---~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-----------------------------  303 (432)
                         ..........++   ..++.++.+|. ++++|..+|+.+.......-.                             
T Consensus       310 d~~~~~~l~~~~~~g~~~~~v~~~~k~G~-l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg  388 (573)
T d1kb0a2         310 TSTQPMILADIKIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG  388 (573)
T ss_dssp             CCCSCCEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred             cccceeeecceecCCCceeeeeeccccce-eEEeccccccccccccccccccccccccccceeeeeeccccccceEEeec
Confidence               111222222233   46778888998 999999999988765521000                             


Q ss_pred             ----CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC-----------CCCCCCceeEeecccceee
Q 014007          304 ----AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP-----------TLPTSSLSFIKGVLPKYFS  368 (432)
Q Consensus       304 ----~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  368 (432)
                          ..-..++++|+..+++....+....++.....+.............           .........+..+-+..-.
T Consensus       389 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk  468 (573)
T d1kb0a2         389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK  468 (573)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred             ccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCc
Confidence                0011246778878888777776666666554432221111100000           0000001111111111112


Q ss_pred             cceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          369 SEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                      ..|.+.   .. .....-..+-.|.+|++|+.||.++.  +|..+|+++...+
T Consensus       469 ~~W~~~---~~-~p~~gg~lstagglVF~G~~dg~l~A--~Da~TGe~LW~~~  515 (573)
T d1kb0a2         469 AAWSVE---HV-SPWNGGTLTTAGNVVFQGTADGRLVA--YHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEE---ES-SSCCCCEEEETTTEEEEECTTSEEEE--EETTTCCEEEEEE
T ss_pred             eEeeec---CC-CCCCCceEEEcCCEEEEECCCCeEEE--EECCCCcEeEEEE
Confidence            223221   11 11111122346788999999999888  4567788775443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.66  E-value=0.007  Score=52.69  Aligned_cols=115  Identities=11%  Similarity=-0.036  Sum_probs=70.8

Q ss_pred             CeEEEEEcCCCCEEEEEcC------C------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007           87 TLLHISFNQDHGCFAAGTD------H------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~------~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~  154 (432)
                      .+.......+|++++.|+-      +      .+.+||..++.-.........+........+.+++.+++.|+.+    
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~----   96 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND----   96 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS----
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC----
Confidence            4444556678888877651      1      16789987765432222221233334455677888888877654    


Q ss_pred             CCeEEEEeCCCCceeEEe--ecCCceEEEEEecCccEEEeC---------CeEEEEEcCCCe
Q 014007          155 LNKVMIWDDHQSRCIGEL--SFRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLK  205 (432)
Q Consensus       155 ~~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~d---------~~i~i~d~~~~~  205 (432)
                      ...+.+||..+..-...-  .....-...+..+|+++++..         ..+.+||..+.+
T Consensus        97 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          97 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            268999998876543222  223334567777888887742         368999988765

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.013  Score=48.11  Aligned_cols=175  Identities=9%  Similarity=-0.024  Sum_probs=112.6

Q ss_pred             CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcCCCe---ee-EEEeeccCCcceEEEecCCC
Q 014007          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLK---LL-HQIETIANPKGLCAVSQGVG  227 (432)
Q Consensus       156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~~  227 (432)
                      ..|+..++.+.+....+.....+.+++|......+. +   .+.|+..++....   .. ..+.........+++.+.++
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            568889987765544455666778999998766555 3   4567776664321   11 12222233456799999999


Q ss_pred             cEEEEeecCCCCcEEEEEccCCceee-eeccCCceeEEEEcCCCCEEEEEc--CCCceEEEEECCCCceEEEEEeCCCcC
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRA  304 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~  304 (432)
                      .++++-  ...+.|.+.+++...... +.........++++|...+|....  ..+. |.-.++. |.....+... .-.
T Consensus        90 ~lY~~d--~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~-I~r~~~d-Gs~~~~l~~~-~~~  164 (266)
T d1ijqa1          90 NIYWTD--SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-NIQ  164 (266)
T ss_dssp             EEEEEE--TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-SCS
T ss_pred             eEEEEe--cCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcc-eeEeccC-CCceeccccc-ccc
Confidence            988764  356889999998865544 344456788999998655555433  3345 7667764 4434444322 225


Q ss_pred             ceEEEEECCCCCEEEEE-eCCCeEEEEEecCC
Q 014007          305 EIYSLAFSSNAQWLAVS-SDKGTVHVFNLKVN  335 (432)
Q Consensus       305 ~i~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~  335 (432)
                      ....+++.+.++.|..+ ...+.|...++...
T Consensus       165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eeeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence            67899999888777766 46678888888654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.59  E-value=0.027  Score=52.08  Aligned_cols=55  Identities=9%  Similarity=0.167  Sum_probs=39.1

Q ss_pred             CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (432)
Q Consensus       280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  338 (432)
                      |. |.-||+.+++.+-.....   .+..+-.++..|.+++.|+.||.++.+|.++++.+
T Consensus       453 G~-l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         453 GQ-IKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             EE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ce-EEEEeCCCCceecccCCC---CCCccceeEecCCEEEEECCCCeEEEEECCCCcEe
Confidence            45 778888888887766532   22222223345678888999999999999999854

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.42  E-value=0.035  Score=49.02  Aligned_cols=246  Identities=11%  Similarity=0.092  Sum_probs=133.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-CC----c-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCC------
Q 014007           83 SPPPTLLHISFNQDHGCFAAGT-DH----G-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD------  150 (432)
Q Consensus        83 ~~~~~v~~~~~s~~~~~l~~~~-~~----~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d------  150 (432)
                      ++.-.+..+++|||++++|.+- .+    . ++++|+++++... ..+.   ......+.|.+++..++-...+      
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~-~~i~---~~~~~~~~W~~D~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-DVLE---RVKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-EEEE---EECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecc-cccc---cccccceEEcCCCCEEEEEEeccccCcc
Confidence            3444455778899999988764 12    2 9999999887653 2232   1222456787776655421111      


Q ss_pred             -----CCCCCCeEEEEeCCCCce--eEEee---cCCceEEEEEecCccEEEe------CC--eEEEEEcCCCee------
Q 014007          151 -----PQYPLNKVMIWDDHQSRC--IGELS---FRSEVRSVKLRRDRIIVVL------EQ--KIFVYNFADLKL------  206 (432)
Q Consensus       151 -----~~~~~~~v~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~~~------d~--~i~i~d~~~~~~------  206 (432)
                           ....+..|..+.+.+...  +..+.   ....+..+..+.++++++.      ++  .+.+.|+.....      
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~  277 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccc
Confidence                 001125788888877643  23333   2234667778899988762      23  345555543211      


Q ss_pred             --eEEEeeccCCcceEEEecCCCcEEEEee-cCCCCcEEEEEccCCc---eeeee-ccCCceeEEEEcCCCCEEEEEc-C
Q 014007          207 --LHQIETIANPKGLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKR---TKFIM-AHDSRIACFALTQDGQLLATSS-T  278 (432)
Q Consensus       207 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~---~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~  278 (432)
                        ...+......  .-.+..++..+++.+. +..++.|...++....   ...+. .+...+..-.+...+.+|+... .
T Consensus       278 ~~~~~~~~~~~~--~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~  355 (430)
T d1qfma1         278 KWVKLIDNFEGE--YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH  355 (430)
T ss_dssp             CCEEEECSSSSC--EEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred             ceeEeecccccc--eEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEc
Confidence              1111111111  1123334555555442 2245777777776532   23333 3455555444444555666554 4


Q ss_pred             CCc-eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE--e--CCCeEEEEEecCCC
Q 014007          279 KGT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS--S--DKGTVHVFNLKVNS  336 (432)
Q Consensus       279 dg~-~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~--~dg~i~iwd~~~~~  336 (432)
                      ++. .|+++++.+++....+..  ..+.+..+...++...+...  +  .-.+++-||+.+++
T Consensus       356 ~~~~~l~v~~~~~~~~~~~~~~--~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         356 DVKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             TTEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEeEEEEEECCCCcEEEecCC--CCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            432 288999988876554432  23566666666665544332  2  34789999998876

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.23  E-value=0.077  Score=48.87  Aligned_cols=150  Identities=13%  Similarity=0.165  Sum_probs=89.8

Q ss_pred             EEecCCCCCCCCCCeEEEEeCCCCceeEEeecC-----CceEEEEEecCccEEE-e-------CCeEEEEEcCCCeeeEE
Q 014007          143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-----SEVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQ  209 (432)
Q Consensus       143 ~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~  209 (432)
                      .++.+..|     +.|.-.|.++|+.+..+...     ..++.--.--++.+++ .       .|.|+-+|.++|+.+-.
T Consensus       123 ~v~~~t~d-----g~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         123 LILKTQLD-----GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             EEEEECTT-----SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             EEEEEeCC-----CCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEE
Confidence            34444555     89999999999998887521     1122111112444444 1       48899999999999877


Q ss_pred             EeeccC--------------------------------------CcceEEEecCCCcEEEEeecCC-------------C
Q 014007          210 IETIAN--------------------------------------PKGLCAVSQGVGSLVLVCPGLQ-------------K  238 (432)
Q Consensus       210 ~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~g~~-------------d  238 (432)
                      +.....                                      .-...++.+..+.+++.++...             .
T Consensus       198 ~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys  277 (596)
T d1w6sa_         198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT  277 (596)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred             eeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccc
Confidence            643210                                      0123566676666666542211             3


Q ss_pred             CcEEEEEccCCceee-ee--ccCC-------ceeEEEE-cCCC---CEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007          239 GQVRVEHYASKRTKF-IM--AHDS-------RIACFAL-TQDG---QLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (432)
Q Consensus       239 ~~i~i~d~~~~~~~~-~~--~~~~-------~i~~~~~-sp~~---~~l~~~~~dg~~i~vwd~~~~~~~~~~~  298 (432)
                      ..|...|.+++++.- ++  .|..       .+.-+.. ..+|   +.++....+|. +.++|..+|+++...+
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~-~~vlDr~tG~~i~~~~  350 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANK  350 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccc-eeeecCCCCceeeecc
Confidence            457778888876543 22  2221       1111221 2344   36788899998 9999999999886554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.08  E-value=0.055  Score=45.82  Aligned_cols=187  Identities=12%  Similarity=0.168  Sum_probs=108.5

Q ss_pred             CCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEec----C--cc-E-EEeC-----CeEEEEEcCC-C
Q 014007          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR----D--RI-I-VVLE-----QKIFVYNFAD-L  204 (432)
Q Consensus       139 ~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~----~--~~-~-~~~d-----~~i~i~d~~~-~  204 (432)
                      |...++++....     +-|++||+ .|+.+..+. .+.++.+..-.    +  .. + ++++     .+|.+|.+.. .
T Consensus        38 p~~SlI~gTdK~-----~Gl~vYdL-~G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~  110 (353)
T d1h6la_          38 PQNSKLITTNKK-----SGLAVYSL-EGKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN  110 (353)
T ss_dssp             GGGCEEEEEETT-----SCCEEEET-TCCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT
T ss_pred             cCccEEEEEcCc-----CCEEEEcC-CCcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc
Confidence            344555555655     67999997 488777765 45666665442    1  22 2 2232     2577887752 2


Q ss_pred             eeeEEEeec-------cCCcceEEE--ecCCCcEEEEeecCCCCcEEEEEccC---Cc-----eeeeeccCCceeEEEEc
Q 014007          205 KLLHQIETI-------ANPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYAS---KR-----TKFIMAHDSRIACFALT  267 (432)
Q Consensus       205 ~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~g~~d~~i~i~d~~~---~~-----~~~~~~~~~~i~~~~~s  267 (432)
                      ..+..+...       ...+..+|+  ++....++++.. ..+|.+..|.+..   +.     ++.+ .-...+..+.+.
T Consensus       111 ~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~-~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvD  188 (353)
T d1h6la_         111 GTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVT-GKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAAD  188 (353)
T ss_dssp             TEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEE-CSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEE
T ss_pred             cccccccccccccccccCcceEEEEEecCCCCeEEEEEE-cCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEe
Confidence            233333221       123556666  555554444433 4789998887643   21     1222 345678899999


Q ss_pred             CCCCEEEEEcCCCceEEEEECCC-----CceEEEEEeCCCcCceEEEEECC--CCC-EEE-EEeCCCeEEEEEecCC
Q 014007          268 QDGQLLATSSTKGTLVRIFNTLD-----GTLLQEVRRGADRAEIYSLAFSS--NAQ-WLA-VSSDKGTVHVFNLKVN  335 (432)
Q Consensus       268 p~~~~l~~~~~dg~~i~vwd~~~-----~~~~~~~~~~~~~~~i~~~~~s~--~~~-~l~-~~~~dg~i~iwd~~~~  335 (432)
                      .....|+.+-++.. |+.++...     +..+....+......+-.|+.-.  ++. ||+ +.-.+++..|||....
T Consensus       189 de~~~LyisEE~~G-iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         189 DEYGSLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TTTTEEEEEETTTE-EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CCCCcEEEecCccc-eEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            99889999988877 77777542     12222222222345677776532  333 444 4447889999999764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.90  E-value=0.053  Score=46.01  Aligned_cols=185  Identities=11%  Similarity=0.127  Sum_probs=94.5

Q ss_pred             EEeeeCCeEEEecCCCC-CC------CCCCeEEEEeCCCCce-eEEee-cC-------CceEEEEE--ecCccE-EE-e-
Q 014007          134 EMLFRCNILALVGGGPD-PQ------YPLNKVMIWDDHQSRC-IGELS-FR-------SEVRSVKL--RRDRII-VV-L-  192 (432)
Q Consensus       134 ~~~~~~~~~~~~s~~~d-~~------~~~~~v~iwd~~~~~~-~~~~~-~~-------~~v~~~~~--~~~~~~-~~-~-  192 (432)
                      ++...+++.++++++.. +.      ...|.|.++|+.+.+. ...+. ..       -....+.+  .+++.. ++ . 
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            34445666665554321 00      1138999999876542 22222 11       12345544  334442 22 2 


Q ss_pred             ----CCeEEEEEcCCCe-eeE---EEeec-cCCcceEEEecCCCcEEEEee--cCC------------CCcEEEEEccCC
Q 014007          193 ----EQKIFVYNFADLK-LLH---QIETI-ANPKGLCAVSQGVGSLVLVCP--GLQ------------KGQVRVEHYASK  249 (432)
Q Consensus       193 ----d~~i~i~d~~~~~-~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~--g~~------------d~~i~i~d~~~~  249 (432)
                          ..+|.+|++.... .+.   ++... ....+.+++..++. ++ ++.  ...            -+...+|..+.+
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy-~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FY-ATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EE-EEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EE-EecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence                3468888775422 121   22111 11234566666654 33 321  000            134455555565


Q ss_pred             ceeeeeccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCCceEEEEEeCCCcCceEEEEECC-CCCEEEEE
Q 014007          250 RTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS-NAQWLAVS  321 (432)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~  321 (432)
                      ........-...+.|+++||+++|+.+.. .+. |++|++.....+.......-....-.+.+.+ +|.+.+.+
T Consensus       197 ~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~-i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         197 DVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             ceEEEcCCCCccceeEECCCCCEEEEEeCCCCe-EEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            55554444566889999999987766654 555 9999987544332222111335677888876 45544433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.70  E-value=0.15  Score=43.67  Aligned_cols=231  Identities=8%  Similarity=0.003  Sum_probs=113.1

Q ss_pred             eEEEEEcCCCCEEEEEcC--CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCC-CCCCCeEEEEeCC
Q 014007           88 LLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP-QYPLNKVMIWDDH  164 (432)
Q Consensus        88 v~~~~~s~~~~~l~~~~~--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~-~~~~~~v~iwd~~  164 (432)
                      ....++.++|++++.|..  +.+.+||..+..-.....+.  ........+...++.+++.++.+. ......+.+||..
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~--~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ--VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS--SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCccccccccc--ccccccceeeecCCceeeeccccccccccceeeeecCC
Confidence            345678899999999873  34999998876655433333  222233455556766666665431 1222579999988


Q ss_pred             CCceeEE--ee--------cC-----CceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEee--c----cCC--cc
Q 014007          165 QSRCIGE--LS--------FR-----SEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIET--I----ANP--KG  218 (432)
Q Consensus       165 ~~~~~~~--~~--------~~-----~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~--~----~~~--~~  218 (432)
                      +.+-...  ..        +.     ..-..+...+++..+..   .+.+.+++..+.........  .    ...  -.
T Consensus       156 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (387)
T d1k3ia3         156 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  235 (387)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCccccccc
Confidence            7643211  00        00     00111222345555553   34566666665443221110  0    001  11


Q ss_pred             eEEEecCCCcEEEEeecCCC-------CcEEEEEccCCc--eeeee-----ccCCceeEEEEcCCCCEEEEEcCCC----
Q 014007          219 LCAVSQGVGSLVLVCPGLQK-------GQVRVEHYASKR--TKFIM-----AHDSRIACFALTQDGQLLATSSTKG----  280 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~g~~d-------~~i~i~d~~~~~--~~~~~-----~~~~~i~~~~~sp~~~~l~~~~~dg----  280 (432)
                      .+.+......++ +.+|..+       ....+.++....  .....     .+...-.+....+||+++++|+.+.    
T Consensus       236 ~~~~~~~~g~v~-v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~  314 (387)
T d1k3ia3         236 AVMYDAVKGKIL-TFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  314 (387)
T ss_dssp             EEEEETTTTEEE-EECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             EEEeeccCCceE-EEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccC
Confidence            222333333333 3344222       123333332211  01111     1122234566678999999988531    


Q ss_pred             -------ceEEEEECCCCceEEEEEeCCCcC-ceEEEEECCCCCEEEEEeC
Q 014007          281 -------TLVRIFNTLDGTLLQEVRRGADRA-EIYSLAFSSNAQWLAVSSD  323 (432)
Q Consensus       281 -------~~i~vwd~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~  323 (432)
                             . +.+||..+.+-.. +....... .-....+.+||+.|+.|+.
T Consensus       315 ~~~~~~~~-ve~Ydp~~~~W~~-~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         315 EDSTPVFT-PEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCCSBCCC-CEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCcEece-EEEEECCCCeEEE-CCCCCCcccceEEEEECCCCEEEEEeCC
Confidence                   4 6789987764322 21111111 1123345789999998873

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.65  E-value=0.15  Score=43.06  Aligned_cols=118  Identities=9%  Similarity=0.074  Sum_probs=70.3

Q ss_pred             CeEEEEeCCCCc-e---eEEee--cCCceEEEEEecCccEEEeC------------------CeEEEEEcCCCeeeEEEe
Q 014007          156 NKVMIWDDHQSR-C---IGELS--FRSEVRSVKLRRDRIIVVLE------------------QKIFVYNFADLKLLHQIE  211 (432)
Q Consensus       156 ~~v~iwd~~~~~-~---~~~~~--~~~~v~~~~~~~~~~~~~~d------------------~~i~i~d~~~~~~~~~~~  211 (432)
                      .+|.+|++.... .   +.++.  .....+++.+..++.+.+++                  +...+|....++......
T Consensus       124 ~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~  203 (340)
T d1v04a_         124 STVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE  203 (340)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE
T ss_pred             ceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC
Confidence            678888765432 2   22233  23457889988888877751                  234444444443322222


Q ss_pred             eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eee--eeccCCceeEEEEcC-CCCEEEEE
Q 014007          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKF--IMAHDSRIACFALTQ-DGQLLATS  276 (432)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~--~~~~~~~i~~~~~sp-~~~~l~~~  276 (432)
                       .-...+.++++|+++.++++.  ...+.|++|++.... ...  ...-....-.+.+.+ +|.+.+.+
T Consensus       204 -~l~~pNGI~~s~d~~~lyVa~--t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         204 -GFDFANGINISPDGKYVYIAE--LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             -EESSEEEEEECTTSSEEEEEE--GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             -CCCccceeEECCCCCEEEEEe--CCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence             234456799999999888775  356889999987632 221  223345567788876 45544443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.65  E-value=0.1  Score=47.98  Aligned_cols=82  Identities=17%  Similarity=0.275  Sum_probs=53.3

Q ss_pred             CCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC-
Q 014007          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-  316 (432)
Q Consensus       238 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-  316 (432)
                      .|.|.-+|+.++++.--.....++..-.++..|.++++|+.||. ++-+|.++|+.+.+++... ...-.=+.|..+|+ 
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~-l~A~Da~TGe~LW~~~~~~-~~~~~P~ty~~~G~q  542 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGY-FKAFDAKSGKELWKFQTGS-GIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCe-EEEEECCCCcEeEEEECCC-CccccCEEEEECCEE
Confidence            46777788887665433333333332223346778889999999 9999999999999998642 11112256667885 


Q ss_pred             EEEEE
Q 014007          317 WLAVS  321 (432)
Q Consensus       317 ~l~~~  321 (432)
                      |+++.
T Consensus       543 Yv~i~  547 (582)
T d1flga_         543 YLGVT  547 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.63  E-value=0.25  Score=45.23  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=23.7

Q ss_pred             ccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007          389 GHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE  421 (432)
Q Consensus       389 s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  421 (432)
                      +..+..|++|+.||.++.  +|.++|+++.+.+
T Consensus       494 stagglVF~Gt~dg~l~A--~Da~TGe~LW~~~  524 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKA--FDAKSGKELWKFQ  524 (582)
T ss_dssp             EETTTEEEEECTTSEEEE--EETTTCCEEEEEE
T ss_pred             EEcCCeEEEeCCCCeEEE--EECCCCcEeEEEE
Confidence            456788889999998887  5668888776544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.47  E-value=0.25  Score=43.30  Aligned_cols=202  Identities=9%  Similarity=0.062  Sum_probs=105.7

Q ss_pred             CcceeEEEEeeeCCeEEEe-----cCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---C-----
Q 014007          127 GGGIGVVEMLFRCNILALV-----GGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---E-----  193 (432)
Q Consensus       127 ~~~~~v~~~~~~~~~~~~~-----s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d-----  193 (432)
                      ++...+..+.++|++..++     .|+..     ..|+++|+.+++.+...-.......+.|.+|+..++.   +     
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~-----~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~  196 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDW-----VTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGK  196 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSC-----EEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred             cccceecceEecCCCCEEEEEeccccCch-----heeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCc
Confidence            3444555667888887665     23333     6899999999987653322222356889999887652   1     


Q ss_pred             -----------CeEEEEEcCCCee--eEEEeeccCC--cceEEEecCCCcEEEEeecCCCCcEEEE--EccCCc------
Q 014007          194 -----------QKIFVYNFADLKL--LHQIETIANP--KGLCAVSQGVGSLVLVCPGLQKGQVRVE--HYASKR------  250 (432)
Q Consensus       194 -----------~~i~i~d~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d~~i~i~--d~~~~~------  250 (432)
                                 ..|..+.+.+...  ...+......  ...+..+.+++.+++...........+|  |+....      
T Consensus       197 ~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~  276 (430)
T d1qfma1         197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI  276 (430)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred             ccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccc
Confidence                       1577888776422  2233332332  3345678888887765543344444444  444311      


Q ss_pred             ---eeeeeccCCceeEEEEcCCCCEEEEEcC---CCceEEEEECCCCce--EEEEEeCCCcCceEEEEECCCCCEEEEE-
Q 014007          251 ---TKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVS-  321 (432)
Q Consensus       251 ---~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~~i~vwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~-  321 (432)
                         ...+........-+ -+.++.+++....   ++. |...++.+...  ...+-.. +...+..-.++..+.+|+.. 
T Consensus       277 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~-L~~~~~~~~~~~~w~~vi~~-~~~~~~~~~~~~~~~~lvl~~  353 (430)
T d1qfma1         277 LKWVKLIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYR-LINIDFTDPEESKWKVLVPE-HEKDVLEWVACVRSNFLVLCY  353 (430)
T ss_dssp             CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE-EEEEETTBCCGGGCEEEECC-CSSCEEEEEEEETTTEEEEEE
T ss_pred             cceeEeecccccceEEE-ecCCceeecccCcccccce-eEEecCCCCccccceEEecc-cCcceeeeEEEEECCEEEEEE
Confidence               11122222222222 2233334443332   345 66667665432  2333322 33334443444444555544 


Q ss_pred             eCCC--eEEEEEecCCC
Q 014007          322 SDKG--TVHVFNLKVNS  336 (432)
Q Consensus       322 ~~dg--~i~iwd~~~~~  336 (432)
                      ..++  .|+++++.+++
T Consensus       354 ~~~~~~~l~v~~~~~~~  370 (430)
T d1qfma1         354 LHDVKNTLQLHDLATGA  370 (430)
T ss_dssp             EETTEEEEEEEETTTCC
T ss_pred             EcCCEeEEEEEECCCCc
Confidence            4554  57888887765

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.27  E-value=0.69  Score=38.84  Aligned_cols=158  Identities=16%  Similarity=0.243  Sum_probs=91.8

Q ss_pred             cEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcC------CCCEEEEEcCC----CceEEEEECC-CCceEEE
Q 014007          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ------DGQLLATSSTK----GTLVRIFNTL-DGTLLQE  296 (432)
Q Consensus       228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp------~~~~l~~~~~d----g~~i~vwd~~-~~~~~~~  296 (432)
                      .+++.+  ..++-|++||+..+.+..+.  .+.+..|..-.      ....|++++..    .. |.+|.+. ....+..
T Consensus        41 SlI~gT--dK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~-l~~~~id~~~~~l~~  115 (353)
T d1h6la_          41 SKLITT--NKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNT-IEIYAIDGKNGTLQS  115 (353)
T ss_dssp             CEEEEE--ETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCE-EEEEEEETTTTEEEE
T ss_pred             cEEEEE--cCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCccee-EEEEEecCccccccc
Confidence            344444  35667999999887776654  34555554432      22235555532    25 7788764 2333333


Q ss_pred             EEeCC-----CcCceEEEEE--CCC-CC-EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccccee
Q 014007          297 VRRGA-----DRAEIYSLAF--SSN-AQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF  367 (432)
Q Consensus       297 ~~~~~-----~~~~i~~~~~--s~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (432)
                      +....     ....+..+|+  ++. |. ++++...+|.+..|.+.......                .           
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~----------------v-----------  168 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY----------------I-----------  168 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS----------------E-----------
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc----------------e-----------
Confidence            32211     1124667777  654 54 45666789999999886543110                0           


Q ss_pred             ecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceE
Q 014007          368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQ  419 (432)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~  419 (432)
                       ....+..+... ..+..|.+....+.|+.+-++..++.++.++..+.....
T Consensus       169 -~~~lvr~f~~~-~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~  218 (353)
T d1h6la_         169 -SGKKVRAFKMN-SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTV  218 (353)
T ss_dssp             -EEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEE
T ss_pred             -eeEeeeccCCC-CccceEEEeCCCCcEEEecCccceEEEEeccCCCcccee
Confidence             00112233333 468899999999999999888877777777665544433

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.08  E-value=0.84  Score=38.76  Aligned_cols=175  Identities=9%  Similarity=0.090  Sum_probs=100.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEcCCC---------eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPF---------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (432)
Q Consensus        87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~  157 (432)
                      ...-++.++...+|++|+.+++.|..+...         ........   .-..+..++|+.+...+.++        +.
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~---~ip~v~~vafs~d~l~v~~~--------~~  106 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK---EIPDVIFVCFHGDQVLVSTR--------NA  106 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE---ECTTEEEEEEETTEEEEEES--------SE
T ss_pred             ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc---CCCCeEEEEeeCCEEEEEeC--------CC
Confidence            455789998888888888888888875211         11111111   11257888998887655544        57


Q ss_pred             EEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEe-----eccCCcceEEEecCCCcEE
Q 014007          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIE-----TIANPKGLCAVSQGVGSLV  230 (432)
Q Consensus       158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  230 (432)
                      +..++...-....... ...++..+.++|....++ .++.+.++++.+++......     .....+.+++|++.+..++
T Consensus       107 l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         107 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             EEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred             EEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEE
Confidence            8888876654443333 567789999999876666 58999999998875433221     1123344556655554443


Q ss_pred             EEeecCCCCcEEEE-EccCCc-eeeeeccCCceeEEEEcCCCCEEEEE
Q 014007          231 LVCPGLQKGQVRVE-HYASKR-TKFIMAHDSRIACFALTQDGQLLATS  276 (432)
Q Consensus       231 ~~~~g~~d~~i~i~-d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~  276 (432)
                      +. .|   +...+. ++.... +.........|.+|.|-.+..++++-
T Consensus       187 ~~-~g---~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         187 AW-RN---GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EE-ET---TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             Ee-CC---CceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            21 11   111111 111100 00001234467889998776666554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.41  E-value=2.7  Score=35.47  Aligned_cols=136  Identities=13%  Similarity=0.125  Sum_probs=76.0

Q ss_pred             CceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee
Q 014007          176 SEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM  255 (432)
Q Consensus       176 ~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~  255 (432)
                      ..|..++|+.+...+..++.+..++...-...........++..+.  +......++.   .++.+.++++.......+.
T Consensus        87 p~v~~vafs~d~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~--~~p~~~~l~~---~~~~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_          87 PDVIFVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLK--NVNNTLVILN---SVNDLSALDLRTKSTKQLA  161 (381)
T ss_dssp             TTEEEEEEETTEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEE--ECSSEEEEEE---TTSEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEeeCCEEEEEeCCCEEEEEeecccccccccccccccccee--cCCceeEEEe---cCCCEEEEEeccCcccccc
Confidence            4688899987765555688899998776444433333334444444  4444555443   5788889988875443321


Q ss_pred             ------ccCCceeEEEEcCCCCEEEEEcCCCceEEEE-ECCCCceEEEEEe-CCCcCceEEEEECCCCCEEEEE
Q 014007          256 ------AHDSRIACFALTQDGQLLATSSTKGTLVRIF-NTLDGTLLQEVRR-GADRAEIYSLAFSSNAQWLAVS  321 (432)
Q Consensus       256 ------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vw-d~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~  321 (432)
                            .-.+.+.++.|++.|..++++..+.  ..+- ++....   .+.. ......+.+|.|-.+..++++-
T Consensus       162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~--~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         162 QNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE--MEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ESEEEEEECSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCcceEEecCCceEEEEeCCcEEEEEeCCCc--eeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEE
Confidence                  1234566777777777666653222  2211 111110   0110 0123468889998776666654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.90  E-value=3.6  Score=35.74  Aligned_cols=56  Identities=14%  Similarity=0.213  Sum_probs=40.3

Q ss_pred             CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC------CCcCceEEEEECCC
Q 014007          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG------ADRAEIYSLAFSSN  314 (432)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~------~~~~~i~~~~~s~~  314 (432)
                      -...++|+|.|+|++|++--..|. |++++..+++........      ........|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~-i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGK-ILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCE-EEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCE-EEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            346779999999998887766788 999988777654333211      12356789999985

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.65  E-value=5.8  Score=34.32  Aligned_cols=57  Identities=9%  Similarity=0.005  Sum_probs=39.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecc-----cCcceeEEEEeeeCC
Q 014007           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCN  140 (432)
Q Consensus        84 ~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~  140 (432)
                      .-+.-++|+|.|||++|++-- .+.|++++..++.......+.     .........++++|+
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            345778999999999988875 455888887666544333332     123467788888875

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.19  E-value=7.4  Score=30.68  Aligned_cols=220  Identities=12%  Similarity=0.075  Sum_probs=97.2

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCC---CCCCCeEEEEeCCCCceeEEe--ecCCceEEEE
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP---QYPLNKVMIWDDHQSRCIGEL--SFRSEVRSVK  182 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~---~~~~~~v~iwd~~~~~~~~~~--~~~~~v~~~~  182 (432)
                      +.+||..+.+-.....+. ..... ..+....+..++++|....   .-....+.+||..+.+....-  .....-..++
T Consensus        21 ~~~yd~~t~~W~~~~~~p-~~R~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~   98 (288)
T d1zgka1          21 LEAYNPSNGTWLRLADLQ-VPRSG-LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG   98 (288)
T ss_dssp             EEEEETTTTEEEECCCCS-SCCBS-CEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred             EEEEECCCCeEEECCCCC-Cccce-eEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecc
Confidence            889999887654444443 11111 2223334555555542110   001146788887765433221  1111111222


Q ss_pred             EecCccEEEe--------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecC----CCCcEEEEEccCCc
Q 014007          183 LRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL----QKGQVRVEHYASKR  250 (432)
Q Consensus       183 ~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~d~~i~i~d~~~~~  250 (432)
                      .. ++++++.        ......+|..+...... ..........+.......+++. +|.    ....+..||.....
T Consensus        99 ~~-~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~-GG~~~~~~~~~~~~~d~~~~~  175 (288)
T d1zgka1          99 VI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV-APMLTRRIGVGVAVLNRLLYAV-GGFDGTNRLNSAECYYPERNE  175 (288)
T ss_dssp             EE-TTEEEEECCEETTEECCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEE-CCBCSSCBCCCEEEEETTTTE
T ss_pred             cc-ceeeEEecceecccccceeeeeccccCccccc-cccccccccceeeeeeecceEe-cCcccccccceEEEeeccccc
Confidence            22 3443332        22455677666543221 1111111122222223334332 232    23456778877654


Q ss_pred             eeeeeccCC--ceeEEEEcCCCCEEEEEcCCC-----ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC
Q 014007          251 TKFIMAHDS--RIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD  323 (432)
Q Consensus       251 ~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg-----~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  323 (432)
                      .........  .-.++.. .++++++.|+.++     . +..+|..+.+.... ........-.+++. .++++++.|+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~-~~~~~~~~~~~~~~-~~~p~~r~~~~~~~-~~~~l~v~GG~  251 (288)
T d1zgka1         176 WRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNS-VERYDVETETWTFV-APMKHRRSALGITV-HQGRIYVLGGY  251 (288)
T ss_dssp             EEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCC-EEEEETTTTEEEEC-CCCSSCCBSCEEEE-ETTEEEEECCB
T ss_pred             cccccccccccccccccc-eeeeEEEecCccccccccc-eeeeeecceeeecc-cCccCcccceEEEE-ECCEEEEEecC
Confidence            433322111  1122222 2455666665443     3 67788776654322 11111111112222 36788877765


Q ss_pred             CC-----eEEEEEecCCC
Q 014007          324 KG-----TVHVFNLKVNS  336 (432)
Q Consensus       324 dg-----~i~iwd~~~~~  336 (432)
                      ++     .|.+||+.+.+
T Consensus       252 ~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         252 DGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CSSCBCCEEEEEETTTTE
T ss_pred             CCCeecceEEEEECCCCE
Confidence            43     37888888754

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=84.74  E-value=6.6  Score=29.77  Aligned_cols=201  Identities=9%  Similarity=0.054  Sum_probs=106.9

Q ss_pred             EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEE--eec--------CCc
Q 014007          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--LSF--------RSE  177 (432)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~--~~~--------~~~  177 (432)
                      |.+-++......  ..+.......|.++++......+..++.|      .+.+|-++.|+...-  +..        ..-
T Consensus        84 i~~~Nlk~~GEE--~~i~spk~vRI~S~~yddk~vvF~Gased------~~~LYviegGklrkL~~vPpFsFVtDI~~d~  155 (313)
T d2hu7a1          84 LFKVNTSRPGEE--QRLEAVKPMRILSGVDTGEAVVFTGATED------RVALYALDGGGLRELARLPGFGFVSDIRGDL  155 (313)
T ss_dssp             EEEEETTSTTCE--EECTTSCSBEEEEEEECSSCEEEEEECSS------CEEEEEEETTEEEEEEEESSCEEEEEEETTE
T ss_pred             EEEEccCCCCee--eEecCCceEEEEEeeecCceEEEecccCC------ceEEEEEeCCceeeeccCCCcceEEeccCCe
Confidence            455555422333  33332344789999999888888888775      677777777754332  221        233


Q ss_pred             eEEEEEecCc-c--EEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee
Q 014007          178 VRSVKLRRDR-I--IVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK  252 (432)
Q Consensus       178 v~~~~~~~~~-~--~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~  252 (432)
                      |..+.+-..+ +  +++  +.|.++|++...|..-.......+.+ .-.+---++.          .-| -+|++.+...
T Consensus       156 I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEs----------ywi-t~D~~s~~ye  223 (313)
T d2hu7a1         156 IAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKV-TAGLETAREA----------RLV-TVDPRDGSVE  223 (313)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCE-EEEEEESSCE----------EEE-EECTTTCCEE
T ss_pred             EEEEeeecCCcceEEEEecccCCEEEecCCCCcccceeEccCcee-eeccCCCCce----------EEE-EEecccCcee
Confidence            4444443222 1  222  26778888777665544333333333 1112111221          222 3456554443


Q ss_pred             eeec--------cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC
Q 014007          253 FIMA--------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK  324 (432)
Q Consensus       253 ~~~~--------~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  324 (432)
                      .+.-        ..-.|+-+-+.|++++++.+-.||. -++|+  +|+.+..-+     +.+.....-.+.-++.-.+-.
T Consensus       224 rve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~-s~lF~--nGk~in~p~-----G~~~gat~i~~~iyfshsSL~  295 (313)
T d2hu7a1         224 DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-SAVFI--DGERVEAPQ-----GNHGRVVLWRGKLVTSHTSLS  295 (313)
T ss_dssp             ECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTE-EEEEE--TTEEECCCS-----SEEEEEEEETTEEEEEEEETT
T ss_pred             eeecCcccceeecceEEEeeeeCCCCcEEEEEecCCc-hheee--cceEecCCC-----CcccceEEECCEEEEeecccC
Confidence            3321        1234666779999999999999999 99997  676654433     333333322222233333344


Q ss_pred             CeEEEEEecCCC
Q 014007          325 GTVHVFNLKVNS  336 (432)
Q Consensus       325 g~i~iwd~~~~~  336 (432)
                      .--+|..+..++
T Consensus       296 tP~kI~~~~~~~  307 (313)
T d2hu7a1         296 TPPRIVSLPSGE  307 (313)
T ss_dssp             EEEEEEEETTCC
T ss_pred             CCceeEEcCCCC
Confidence            445566666655