Citrus Sinensis ID: 014012


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MGDAIEGLLTNRRKNLSRSISHAQDELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFVLACDTCDGTHKRPYDGVVQLSLSSVAALSFICLSSFVKKYGLRRFLFLDKLCDESEMVRSRYMEQLNRSLKILSIFVLPCFLVESAYKIWWYASGASQIPFLGNVYLSDTVACIMELCSWLYRTTVIFLVCVLFRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKHLRIISHRYRAFILWFLIMVTGSQFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHKAQAVTCLAAKWHVCATVDSFDVNDGETPRIPDAAGRAFPICHGESDCDDAGDEEDDLDNSNLIPAYAYSTISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGIQLSLVLWLLGKTVGLS
ccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHcccEEcc
cccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHEEEHHHHHHHHHHHHHHHHHHHHHcHHHEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHccEEEEc
MGDAIEGLLTNRRKNLSRSISHAQDELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFVLacdtcdgthkrpydgVVQLSLSSVAALSFICLSSFVKKYGLRRFLFLDKLCDESEMVRSRYMEQLNRSLKILSIFVLPCFLVESAYKIWWyasgasqipflgnvylSDTVACIMELCSWLYRTTVIFLVCVLFRLVCHLQILRLLDFAqvfqtdsdvDSVLAEHLRIRKHLRIISHRYRAFILWFLIMVTGSQFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHKAQAVTCLAAKWHvcatvdsfdvndgetpripdaagrafpichgesdcddagdeeddldnsnlipayaystISFQKRQALVNYFennragitvFGFTLDRSTLHTIFGIQLSLVLWLLGKTVGLS
MGDAIEGLLTNRRKNLSRSISHAQDELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFVLACDTCDGTHKRPYDGVVQLSLSSVAALSFICLSSFVKKYGLRRFLFLDKLCDESEMVRSRYMEQLNRSLKILSIFVLPCFLVESAYKIWWYASGASQIPFLGNVYLSDTVACIMELCSWLYRTTVIFLVCVLFRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKHLRIISHRYRAFILWFLIMVTGSQFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHKAQAVTCLAAKWHVCATVDSFDVNDGETPRIPDAAGRAFPICHGESDCDDAGDEEDDLDNSNLIPAYAYSTISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGIQLSLVLWLLGKTVGLS
MGDAIEGLLTNRRKNLSRSISHAQDELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFVLACDTCDGTHKRPYDGvvqlslssvaalsFICLSSFVKKYGLRRFLFLDKLCDESEMVRSRYMEQLNRSLKILSIFVLPCFLVESAYKIWWYASGASQIPFLGNVYLSDTVACIMELCSWLYRTTVIFLVCVLFRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKHLRIISHRYRAFILWFLIMVTGSQFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHKAQAVTCLAAKWHVCATVDSFDVNDGETPRIPDAAGRAFPICHGesdcddagdeeddldNSNLIPAYAYSTISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGIQLSLVLWLLGKTVGLS
**************************LHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFVLACDTCDGTHKRPYDGVVQLSLSSVAALSFICLSSFVKKYGLRRFLFLDKLCDESEMVRSRYMEQLNRSLKILSIFVLPCFLVESAYKIWWYASGASQIPFLGNVYLSDTVACIMELCSWLYRTTVIFLVCVLFRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKHLRIISHRYRAFILWFLIMVTGSQFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHKAQAVTCLAAKWHVCATVDSFDVNDGETPRIPDAAGRAFPICH******************NLIPAYAYSTISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGIQLSLVLWLLGKTV***
******G*****************DELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFVLACDTCDGTHKRPYDGVVQLSLSSVAALSFICLSSFVKKYGLRRFLFLDKLCDESEMVRSRYMEQLNRSLKILSIFVLPCFLVESAYKIWWYASGASQIPFLGNVYLSDTVACIMELCSWLYRTTVIFLVCVLFRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKHLRIISHRYRAFILWFLIMVTGSQFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHKAQAVTCLAAKWHVCATVDSF*****************************************LIPAYAYSTISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGIQLSLVLWLLGKTVGLS
MGDAIEGLLTNRRKNLSRSISHAQDELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFVLACDTCDGTHKRPYDGVVQLSLSSVAALSFICLSSFVKKYGLRRFLFLDKLCDESEMVRSRYMEQLNRSLKILSIFVLPCFLVESAYKIWWYASGASQIPFLGNVYLSDTVACIMELCSWLYRTTVIFLVCVLFRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKHLRIISHRYRAFILWFLIMVTGSQFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHKAQAVTCLAAKWHVCATVDSFDVNDGETPRIPDAAGRAFPICHGESDCDDAGDEEDDLDNSNLIPAYAYSTISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGIQLSLVLWLLGKTVGLS
******GL*T*RRKNLSRSISHAQDELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFVLACDTCDGTHKRPYDGVVQLSLSSVAALSFICLSSFVKKYGLRRFLFLDKLCDESEMVRSRYMEQLNRSLKILSIFVLPCFLVESAYKIWWYASGASQIPFLGNVYLSDTVACIMELCSWLYRTTVIFLVCVLFRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKHLRIISHRYRAFILWFLIMVTGSQFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHKAQAVTCLAAKWHVCATVDSF**************************************NSNLIPAYAYSTISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGIQLSLVLWLLGKTVGLS
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MGDAIEGLLTNRRKNLSRSISHAQDELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFVLACDTCDGTHKRPYDGVVQLSLSSVAALSFICLSSFVKKYGLRRFLFLDKLCDESEMVRSRYMEQLNRSLKILSIFVLPCFLVESAYKIWWYASGASQIPFLGNVYLSDTVACIMELCSWLYRTTVIFLVCVLFRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKHLRIISHRYRAFILWFLIMVTGSQFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHKAQAVTCLAAKWHVCATVDSFDVNDGETPRIPDAAGRAFPICHGESDCDDAGDEEDDLDNSNLIPAYAYSTISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGIQLSLVLWLLGKTVGLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
18402564452 uncharacterized protein [Arabidopsis tha 0.981 0.938 0.787 0.0
297834964451 extracellular ligand-gated ion channel [ 0.997 0.955 0.777 0.0
449466580434 PREDICTED: uncharacterized protein LOC10 0.997 0.993 0.742 0.0
225460869435 PREDICTED: uncharacterized protein LOC10 0.995 0.988 0.709 0.0
224056355433 predicted protein [Populus trichocarpa] 0.976 0.974 0.774 0.0
147861419435 hypothetical protein VITISV_007068 [Viti 0.995 0.988 0.709 0.0
9294547430 unnamed protein product [Arabidopsis tha 0.930 0.934 0.745 0.0
297852764448 predicted protein [Arabidopsis lyrata su 0.979 0.944 0.739 1e-177
356569734465 PREDICTED: uncharacterized protein LOC10 0.974 0.905 0.711 1e-176
356524291441 PREDICTED: uncharacterized protein LOC10 0.981 0.961 0.729 1e-175
>gi|18402564|ref|NP_566658.1| uncharacterized protein [Arabidopsis thaliana] gi|18377809|gb|AAL67091.1| AT3g20300/MQC12_5 [Arabidopsis thaliana] gi|21537221|gb|AAM61562.1| unknown [Arabidopsis thaliana] gi|22655008|gb|AAM98095.1| AT3g20300/MQC12_5 [Arabidopsis thaliana] gi|332642840|gb|AEE76361.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/428 (78%), Positives = 370/428 (86%), Gaps = 4/428 (0%)

Query: 9   LTNRRKNLSRSISHAQDELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFV 68
           L NR    +RS+SHAQDELHSFR YL+WMCVDQS+ +TA LSWSMFV+FT+VVPA SHF+
Sbjct: 25  LINRENKFTRSVSHAQDELHSFRKYLRWMCVDQSSPWTAVLSWSMFVVFTLVVPATSHFM 84

Query: 69  LACDTCDGTHKRPYDGVVQLSLSSVAALSFICLSSFVKKYGLRRFLFLDKLCDESEMVRS 128
           LAC  CD  H RPYD VVQLSLSS AALSF+CLS FV KYGLRRFLF DKL DESE VR 
Sbjct: 85  LACSDCDSHHSRPYDSVVQLSLSSFAALSFLCLSRFVSKYGLRRFLFFDKLWDESETVRL 144

Query: 129 RYMEQLNRSLKILSIFVLPCFLVESAYKIWWYASGASQIPFLGNVYLSDTVACIMELCSW 188
            Y  QLNRSLKILS FV PCFL  S+YKIWWYASGASQIPFLGNV LSDTVAC+MELCSW
Sbjct: 145 GYTNQLNRSLKILSYFVSPCFLAMSSYKIWWYASGASQIPFLGNVILSDTVACLMELCSW 204

Query: 189 LYRTTVIFLVCVLFRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKHLRIISHRYR 248
           LYRTTVIFLVCVLFRL+CHLQILRL DFAQVFQ DSDV S+L+EHLRIR+HLRIISHRYR
Sbjct: 205 LYRTTVIFLVCVLFRLICHLQILRLQDFAQVFQMDSDVGSILSEHLRIRRHLRIISHRYR 264

Query: 249 AFILWFLIMVTGSQFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHK 308
            FIL  LI+VTGSQF SLL+TTK  A +NIY AGELALCSMTLV  LLILLRSA+KITHK
Sbjct: 265 TFILLSLILVTGSQFYSLLITTKAYAELNIYRAGELALCSMTLVTALLILLRSASKITHK 324

Query: 309 AQAVTCLAAKWHVCATVDSFDVNDGETPRIPD-AAGRAFPIC---HGESDCDDAGDEEDD 364
           AQAVTCLAAKWHVCAT++SF+  DGETPR+ D A+G  +      +GESD +D GDEEDD
Sbjct: 325 AQAVTCLAAKWHVCATIESFETVDGETPRLVDRASGHGYYPTDDDNGESDSEDYGDEEDD 384

Query: 365 LDNSNLIPAYAYSTISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGIQLSLVLWL 424
            DN+NLIPAYAYSTISFQKRQALVNYFENNR+GITVFGFTLDRSTLHTIFGI++SLVLWL
Sbjct: 385 FDNNNLIPAYAYSTISFQKRQALVNYFENNRSGITVFGFTLDRSTLHTIFGIEMSLVLWL 444

Query: 425 LGKTVGLS 432
           LGKT+G+S
Sbjct: 445 LGKTIGIS 452




Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834964|ref|XP_002885364.1| extracellular ligand-gated ion channel [Arabidopsis lyrata subsp. lyrata] gi|297331204|gb|EFH61623.1| extracellular ligand-gated ion channel [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449466580|ref|XP_004151004.1| PREDICTED: uncharacterized protein LOC101212672 [Cucumis sativus] gi|449482633|ref|XP_004156355.1| PREDICTED: uncharacterized protein LOC101230635 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225460869|ref|XP_002277314.1| PREDICTED: uncharacterized protein LOC100245205 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224056355|ref|XP_002298818.1| predicted protein [Populus trichocarpa] gi|222846076|gb|EEE83623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147861419|emb|CAN83979.1| hypothetical protein VITISV_007068 [Vitis vinifera] Back     alignment and taxonomy information
>gi|9294547|dbj|BAB02810.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297852764|ref|XP_002894263.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297340105|gb|EFH70522.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356569734|ref|XP_003553051.1| PREDICTED: uncharacterized protein LOC100817487 [Glycine max] Back     alignment and taxonomy information
>gi|356524291|ref|XP_003530763.1| PREDICTED: uncharacterized protein LOC100806904 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2092424452 AT3G20300 [Arabidopsis thalian 0.981 0.938 0.735 5.4e-166
TAIR|locus:2008046453 AT1G50630 [Arabidopsis thalian 0.976 0.931 0.667 9.8e-151
TAIR|locus:2132045437 MRB1 "AT4G22270" [Arabidopsis 0.921 0.910 0.533 3.9e-108
TAIR|locus:2141481453 AT4G03820 "AT4G03820" [Arabido 0.921 0.878 0.492 1.4e-101
TAIR|locus:2047032414 AT2G21080 "AT2G21080" [Arabido 0.710 0.741 0.347 1.1e-60
TAIR|locus:2008828456 AT1G67570 "AT1G67570" [Arabido 0.909 0.861 0.309 1.6e-54
TAIR|locus:2092424 AT3G20300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1615 (573.6 bits), Expect = 5.4e-166, P = 5.4e-166
 Identities = 315/428 (73%), Positives = 347/428 (81%)

Query:     9 LTNRRKNLSRSISHAQDELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFV 68
             L NR    +RS+SHAQDELHSFR YL+WMCVDQS+ +TA LSWSMFV+FT+VVPA SHF+
Sbjct:    25 LINRENKFTRSVSHAQDELHSFRKYLRWMCVDQSSPWTAVLSWSMFVVFTLVVPATSHFM 84

Query:    69 LACDTCDGTHKRPYDGXXXXXXXXXXXXXFICLSSFVKKYGLRRFLFLDKLCDESEMVRS 128
             LAC  CD  H RPYD              F+CLS FV KYGLRRFLF DKL DESE VR 
Sbjct:    85 LACSDCDSHHSRPYDSVVQLSLSSFAALSFLCLSRFVSKYGLRRFLFFDKLWDESETVRL 144

Query:   129 RYMEQLNRSLKILSIFVLPCFLVESAYKIWWYASGASQIPFLGNVYLSDTVACIMELCSW 188
              Y  QLNRSLKILS FV PCFL  S+YKIWWYASGASQIPFLGNV LSDTVAC+MELCSW
Sbjct:   145 GYTNQLNRSLKILSYFVSPCFLAMSSYKIWWYASGASQIPFLGNVILSDTVACLMELCSW 204

Query:   189 LYRTTVIFLVCVLFRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKHLRIISHRYR 248
             LYRTTVIFLVCVLFRL+CHLQILRL DFAQVFQ DSDV S+L+EHLRIR+HLRIISHRYR
Sbjct:   205 LYRTTVIFLVCVLFRLICHLQILRLQDFAQVFQMDSDVGSILSEHLRIRRHLRIISHRYR 264

Query:   249 AFILWFLIMVTGSQFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHK 308
              FIL  LI+VTGSQF SLL+TTK  A +NIY AGELALCSMTLV  LLILLRSA+KITHK
Sbjct:   265 TFILLSLILVTGSQFYSLLITTKAYAELNIYRAGELALCSMTLVTALLILLRSASKITHK 324

Query:   309 AQAVTCLAAKWHVCATVDSFDVNDGETPRIPD-AAGRAF-PIC--HGXXXXXXXXXXXXX 364
             AQAVTCLAAKWHVCAT++SF+  DGETPR+ D A+G  + P    +G             
Sbjct:   325 AQAVTCLAAKWHVCATIESFETVDGETPRLVDRASGHGYYPTDDDNGESDSEDYGDEEDD 384

Query:   365 XXNSNLIPAYAYSTISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGIQLSLVLWL 424
               N+NLIPAYAYSTISFQKRQALVNYFENNR+GITVFGFTLDRSTLHTIFGI++SLVLWL
Sbjct:   385 FDNNNLIPAYAYSTISFQKRQALVNYFENNRSGITVFGFTLDRSTLHTIFGIEMSLVLWL 444

Query:   425 LGKTVGLS 432
             LGKT+G+S
Sbjct:   445 LGKTIGIS 452




GO:0005739 "mitochondrion" evidence=ISM
GO:0009409 "response to cold" evidence=RCA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2008046 AT1G50630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132045 MRB1 "AT4G22270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141481 AT4G03820 "AT4G03820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047032 AT2G21080 "AT2G21080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008828 AT1G67570 "AT1G67570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
AT3G20300
unknown protein; unknown protein; EXPRESSED IN- 13 plant structures; EXPRESSED DURING- 8 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G50630.1); Has 80 Blast hits to 80 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (452 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G25430
anion exchanger; anion exchanger; FUNCTIONS IN- anion exchanger activity; INVOLVED IN- anion tr [...] (671 aa)
       0.595
VATG3
VATG3 (vacuolar ATP synthase G3); hydrolase, acting on acid anhydrides, catalyzing transmembran [...] (108 aa)
       0.575
AT1G57550
hydrophobic protein, putative / low temperature and salt responsive protein, putative; hydropho [...] (52 aa)
       0.534
AT2G24040
hydrophobic protein, putative / low temperature and salt responsive protein, putative; hydropho [...] (75 aa)
       0.467
ATCNGC7
ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7); calmodulin binding / cyclic nucleotide binding / i [...] (709 aa)
       0.463
AT1G71680
amino acid transmembrane transporter; amino acid transmembrane transporter; FUNCTIONS IN- amino [...] (448 aa)
       0.439
ATCNGC8
ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8); calmodulin binding / cyclic nucleotide binding / i [...] (753 aa)
       0.409
NIP4;1
NIP4;1 (NOD26-LIKE INTRINSIC PROTEIN 4;1); water channel; NOD26-LIKE INTRINSIC PROTEIN 4;1 (NIP [...] (283 aa)
       0.408
AHA6
AHA6 (Arabidopsis H(+)-ATPase 6); ATPase; Arabidopsis H(+)-ATPase 6 (AHA6); FUNCTIONS IN- ATPas [...] (949 aa)
       0.408
ATOPT9
ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9); oligopeptide transporter; oligopeptid [...] (741 aa)
       0.407

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
pfam12056398 pfam12056, DUF3537, Protein of unknown function (D 0.0
>gnl|CDD|221398 pfam12056, DUF3537, Protein of unknown function (DUF3537) Back     alignment and domain information
 Score =  578 bits (1492), Expect = 0.0
 Identities = 248/400 (62%), Positives = 301/400 (75%), Gaps = 7/400 (1%)

Query: 22  HAQDELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFVLACDTCDGTHKRP 81
           H QDEL SFRS L+W+C D S+   A LSWS+F L  + VPAISHF+L C  CD  H+RP
Sbjct: 1   HDQDELRSFRSLLRWVCFDHSSPCGAALSWSVFFLLAVAVPAISHFLLPCRDCDFDHRRP 60

Query: 82  YDGVVQLSLSSVAALSFICLSSFVKKYGLRRFLFLDKLCDESEMVRSRYMEQLNRSLKIL 141
           +D +VQLSLS+ AA+SF+CLS + +KYGLR+FLFLDKL D+S+ VR  Y  ++ RS ++L
Sbjct: 61  FDVLVQLSLSAFAAVSFLCLSRWFRKYGLRKFLFLDKLSDDSDRVRLGYTAEIKRSFRLL 120

Query: 142 SIFVLPCFLVESAYKIWWYASGASQIPFLGNVYLSDTVACIMELCSWLYRTTVIFLVCVL 201
           + FVLPCFL+E+ YKIWWYASG SQIPF+GN  LS +VAC +EL SW+YRTT+  LVCVL
Sbjct: 121 AYFVLPCFLLEAVYKIWWYASGGSQIPFIGNPVLSLSVACTLELASWMYRTTIFLLVCVL 180

Query: 202 FRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKHLRIISHRYRAFILWFLIMVTGS 261
           FRL+CHLQILRL DFA++F+ +SDV+SVL EHLRIR+ L IISHR+R FIL  L++VT S
Sbjct: 181 FRLICHLQILRLDDFAKLFEGESDVESVLKEHLRIRRQLSIISHRFRKFILLSLLLVTAS 240

Query: 262 QFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHKAQAVTCLAAKWHV 321
           QFA+LL+TT  S  VNI   GELALCS+ LV+GL I L SA KITHKAQAVT LA+KWH 
Sbjct: 241 QFAALLLTTAASGEVNILNGGELALCSVVLVSGLFICLHSAAKITHKAQAVTSLASKWHA 300

Query: 322 CATVDSFDVNDGETPR-----IPDAAGRAFPICHGESDCDDAGDEEDDLDNSNLIPAYAY 376
           CAT  SFD    ETP                     S  D++GDEEDDLDN+ ++P+YA 
Sbjct: 301 CATCSSFDTTVDETPTSVLLPAASNLVLRPVSSSSSSS-DESGDEEDDLDNTKIMPSYA- 358

Query: 377 STISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGI 416
            TISFQKRQALV Y ENNRAGITV+GFT+DR+ LHTIF I
Sbjct: 359 RTISFQKRQALVTYLENNRAGITVYGFTVDRTWLHTIFMI 398


This family of transmembrane proteins are functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 427 to 453 amino acids in length. Length = 398

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
PF12056398 DUF3537: Protein of unknown function (DUF3537); In 100.0
PF08395372 7tm_7: 7tm Chemosensory receptor; InterPro: IPR013 97.18
PF02949313 7tm_6: 7tm Odorant receptor; InterPro: IPR004117 A 84.05
>PF12056 DUF3537: Protein of unknown function (DUF3537); InterPro: IPR021924 This family of transmembrane proteins are functionally uncharacterised Back     alignment and domain information
Probab=100.00  E-value=1e-172  Score=1289.42  Aligned_cols=394  Identities=59%  Similarity=1.017  Sum_probs=378.0

Q ss_pred             chhHHHHHHHHHhhhheecCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCcchhhhhhhhHHHHHHHHHh
Q 014012           22 HAQDELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHFVLACDTCDGTHKRPYDGVVQLSLSSVAALSFICL  101 (432)
Q Consensus        22 ~~~deLr~fr~~L~w~~ldqSs~~~~~~Sw~~F~ll~v~vP~~~~~~~~c~~cd~~~~~~f~~~Vq~s~s~lAavsf~cL  101 (432)
                      |++||||+||++|+|||+||||++++++||++|+++|++||++++++++|++||++|++|||++||+|||++|+|||+||
T Consensus         1 h~~deL~~fr~~L~w~~~dqSs~~~~~~Sw~~F~ll~v~vP~~~~~~~~c~~cd~~~~~~f~~~Vq~s~s~lAavsf~cL   80 (398)
T PF12056_consen    1 HARDELRSFRSFLRWCGLDQSSPLSAALSWSVFLLLAVAVPAASHFLLSCPSCDKYHIRPFEKLVQLSQSALAAVSFLCL   80 (398)
T ss_pred             CchhHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhcCCCchhHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccceeecccccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhheeeeeccccCCccccccchhhHHH
Q 014012          102 SSFVKKYGLRRFLFLDKLCDESEMVRSRYMEQLNRSLKILSIFVLPCFLVESAYKIWWYASGASQIPFLGNVYLSDTVAC  181 (432)
Q Consensus       102 S~~~rkyGLRr~LflD~l~~~s~~vr~gY~~~l~~sfRlLa~~vLPcf~~e~a~ki~w~~~v~~~~P~~~~~~~~~~v~~  181 (432)
                      |||+||||||||||+||++|||++||+||++||++|||+|++|+||||++|+|||||||++++.++||+++++++|++||
T Consensus        81 S~~~rkyGlRr~LflD~l~~~s~~vr~gY~~~l~~sfrlLa~~vLPcf~~e~~~ki~~~~~~~~~~P~~~~~~~~~sva~  160 (398)
T PF12056_consen   81 SHFLRKYGLRRFLFLDKLRDDSEEVRRGYTRQLNRSFRLLACWVLPCFLVEAAYKIWWYSSVAVQIPYIGHPSWWNSVAC  160 (398)
T ss_pred             HHHhHhcCceeeeeecccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEeeccccCCccCCccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHhhhcccCCHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHH
Q 014012          182 IMELCSWLYRTTVIFLVCVLFRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKHLRIISHRYRAFILWFLIMVTGS  261 (432)
Q Consensus       182 ~~~l~SW~YrT~ifll~CVLFrLiC~LQiLR~~~~~klfe~~sdv~~il~EH~RIR~qL~~ISHRfR~Fil~~ll~VTaS  261 (432)
                      +++++||+|||+|||++||||||+|||||||||||+|+||+++||++||+||+|||+||+|||||||+|||++|++||+|
T Consensus       161 ~l~l~SW~YrT~ifl~~CvLFrLiC~LQiLr~~~~~klfe~~sdv~~il~EH~RiR~qL~~ISHRfR~Fil~~l~~VTaS  240 (398)
T PF12056_consen  161 LLELASWLYRTTIFLLVCVLFRLICNLQILRFEGYAKLFERDSDVGVILEEHLRIRRQLSKISHRFRIFILLSLLLVTAS  240 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhheehHhHHHHHccCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCceeeEEecCcchhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhcccCCCCCCCCCCCCCC
Q 014012          262 QFASLLMTTKPSAVVNIYIAGELALCSMTLVAGLLILLRSATKITHKAQAVTCLAAKWHVCATVDSFDVNDGETPRIPDA  341 (432)
Q Consensus       262 Qf~sLl~~t~~~~~inf~~~GDLavcS~vqv~Gl~icL~~AaKITHRAQ~I~siAskWHa~aT~~s~d~~~~~~p~~~~~  341 (432)
                      ||++||+||++++++||+|+|||||||+|||+|++||||||||||||||+|||+||||||++||+|+|++++|+|+....
T Consensus       241 Qf~sLl~~t~~~~~inf~~~GdlavcS~vqv~Gl~iCL~~AaKITHrAQ~I~siAskWHa~aTc~s~d~~~~~~p~~~~~  320 (398)
T PF12056_consen  241 QFVSLLQTTRSKGDINFFNAGDLAVCSVVQVSGLFICLHGAAKITHRAQAITSIASKWHACATCSSFDSDQGETPTSDSL  320 (398)
T ss_pred             HHHHHHHHhccccceeEeeccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheecccccccccCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888788874411


Q ss_pred             ---CCCCCC-CCCCCCCCCCCCCCCccCCCCcccccccccchhHHHHHHHHHHhhhCCCceEEEEEeeehhhHHHHHHH
Q 014012          342 ---AGRAFP-ICHGESDCDDAGDEEDDLDNSNLIPAYAYSTISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGI  416 (432)
Q Consensus       342 ---~~~~~~-~~~~~~~~d~~~~~~d~~d~~~~~~~~~~~~~SfqkRQAlVtYLq~N~~GITvfGf~lDR~~LhTIF~~  416 (432)
                         +++.++ ..+.+.+|||++||+|+.||+++.|+|+ +++||||||||||||||||||||||||+|||||||||||+
T Consensus       321 ~~~~~~~~~~~~~~~~sd~es~d~~~~~~~~~~~~~~~-~~~SfqKRQALVtYLq~N~aGITvfGf~lDR~~LhTIF~i  398 (398)
T PF12056_consen  321 SAAANPFPSAGINSSSSDDESGDEEDDLDNTKQLPSYA-DMISFQKRQALVTYLQNNRAGITVFGFVLDRGLLHTIFMI  398 (398)
T ss_pred             ccccccccCCCCCCCccchhhcccCCCCCccccccccc-hhHHHHHHHHHHHHHhcCCCCeEEEEEEeehHHHHHHhhC
Confidence               122222 4455666777778889999999999997 7999999999999999999999999999999999999985



This protein is found in eukaryotes. Proteins in this family are typically between 427 to 453 amino acids in length.

>PF08395 7tm_7: 7tm Chemosensory receptor; InterPro: IPR013604 This family includes a number of gustatory and odorant receptors mainly from insect species such as Anopheles gambiae (African malaria mosquito) and Drosophila melanogaster (Fruit fly) Back     alignment and domain information
>PF02949 7tm_6: 7tm Odorant receptor; InterPro: IPR004117 All known members of this group are seven-transmembrane proteins that are candidate odorant receptors in Drosophila Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 43/280 (15%), Positives = 76/280 (27%), Gaps = 82/280 (29%)

Query: 8   LLTNRRKNLSRSISHAQDELHSFRSYLKWMCVDQSNCFTACLSWSMFVLFTIVVPAISHF 67
           LLT R K ++  +S       +    L       S   T     S+ + +          
Sbjct: 269 LLTTRFKQVTDFLS----AATTTHISL----DHHSMTLTPDEVKSLLLKYL----DCRPQ 316

Query: 68  VLACDTCDGTHKRPYDGVVQLSLSSVAAL--SFICLSSFVKKYGLRRF-----LFLDKLC 120
            L  +        P        LS +A      +      K     +        L+ L 
Sbjct: 317 DLPREVLTTN---P------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL- 366

Query: 121 DESEMVRSRYMEQLNRSLKILSIFV----LPCFLVESAYKIWWYASGASQIPFLGNVYLS 176
           + +E  R  +          LS+F     +P         + W+              + 
Sbjct: 367 EPAEY-RKMFDR--------LSVFPPSAHIP----TILLSLIWFDV------------IK 401

Query: 177 DTVACIMELCS-------WLYRTTVIFLVCVLFRLVCHLQIL-----RLLD---FAQVFQ 221
             V  ++               +T I +  +   L   L+        ++D     + F 
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 222 TDS----DVDSVLAEHLRIRKHLRII--SHRYRAFILWFL 255
           +D      +D     H  I  HL+ I    R   F + FL
Sbjct: 461 SDDLIPPYLDQYFYSH--IGHHLKNIEHPERMTLFRMVFL 498


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00