Citrus Sinensis ID: 014013

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
Protein Sequence
MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEIESS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHcccccccHHHcccccHHHHHHHHHHHHHHHccccccHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHcccccccHHHcccccHHHHHHHHHHHHHHHccccccHcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccc
Coil and Loop (DISEMBL)
mskfdyprlsaTEIVTILTETEIAVITendlknpnpdfvSDLYTRLLIFLDvlheddqgQLDFAALEqlenpdlhvRSVQIMKLYSMVKEVVTtvncpmnftlkdlirpdatrtedtkmnllrpiaedlTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEktgaldekfsQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNsigtllpvteiess
Flexible Loop (DISEMBL)
mskfdyprlsaTEIVTILTETEIAVitendlknpnpDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVttvncpmnftlkdlirpdatrtedtkmnllrpiaedltrldEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIqdlnkhqvslrtTLNKLKEKTGALDEKFSQTEFDLVQSvqqnadlrskivqspeklqrtleeKKSIREEARDAEKLamqsfqekttTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSlkarlnddvVLDKSLEAKLierqgkveqlDELQQQLekernlksedatRAFENVKLEMESKRQDLEARQKKVEAVVTevdaitsktkfvkesGAAKLQELASKAEEIVEKFQQytnsigtllpvteiess
Low Complexity Region (SEG)
MSKFDYPRLSateivtilteteiaviteNDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVeqldelqqqlekeRNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEIESS
Disordered region (IsUnstruct)
*******RLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRP***************************************EIAAYNEVRERELPLVQEVDAKVK*L***I*************************************************************************************************************************************V****************************************************************VVTEVDAIT***********************IVEKFQQYTNSIGTLLP*******
Disordered Region (DISOPRED)
*SKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQG*********LENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRT*DTKMNLLRPIAEDLTRLD***********************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKT**********MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM****************VVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEIESS
Disordered Region (DISPRO)
***FDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEI***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxRERELPLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKxxxxxxxxxxxxxxxxxxxxxAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAxxxxxxxxxxxxxxxxxxxxxxxxxVTEVDAITSKTKFVKESGAAKxxxxxxxxxxxxxxxxxxxxxIGTLLPVTEIESS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	432	2.2.26 [Sep-21-2011]
P0CP40	467	Probable kinetochore prot	yes	no	0.814	0.753	0.237	2e-05
P0CP41	467	Probable kinetochore prot	N/A	no	0.814	0.753	0.237	2e-05
Q6CJ06	451	Probable kinetochore prot	yes	no	0.444	0.425	0.236	5e-05
Q9BZD4	464	Kinetochore protein Nuf2	yes	no	0.668	0.622	0.239	0.0001
Q7ZW63	454	Kinetochore protein Nuf2	yes	no	0.914	0.870	0.226	0.0001
Q6AYL9	464	Kinetochore protein Nuf2	yes	no	0.847	0.788	0.256	0.0003

>sp|P0CP40|NUF2_CRYNJ Probable kinetochore protein NUF2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NUF2 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 183/447 (40%), Gaps = 95/447 (21%)

Query: 6   YPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFL-----DVLHEDDQ-- 58
           +P L+A +I+  L   +I    E DL  P       +Y  LL  L     + +    Q  
Sbjct: 15  FPLLTAHDILECLAALDIPAQME-DLTKPTAQSTQSIYGSLLEVLMGASINSIEGPKQAL 73

Query: 59  -GQLDFAALE---------QLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIR 108
            G +++  L           L   +++  ++Q M  +   + +      P +F + DL R
Sbjct: 74  LGMMEYKVLSFRSMKRTQINLSRQEMYSDTLQFMMFFKHCRRLALLCGIP-DFAISDLAR 132

Query: 109 PDATRTE-------------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNA---EIAA 152
           PDA R               D +M       E+L +  ++  +L  K  +L     EI A
Sbjct: 133 PDANRLRKVLSGIMNFAKFRDERMQTQARFQENLQKHQKKAVDLRRKTEELETQFQEITA 192

Query: 153 YNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 212
            N     E P  ++   + + L+  + +LN  ++       +LK++   L E+ +     
Sbjct: 193 RNAA---ERPQSEQAQKRNELLKSELLELNSQRLKEVQEYEELKKERQTLLEQVNHNNRI 249

Query: 213 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKT--------- 263
           + Q   Q    +S++VQSP++++R + E       A  +EK  + SFQ+K          
Sbjct: 250 VTQLELQIGSAKSRLVQSPDRIKRHISEMSF----AIQSEKAKLASFQQKARELTNRLEV 305

Query: 264 -TTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLI 322
              LEV  + L  +       +A  E+   +KS      +L+AR          LE + I
Sbjct: 306 IGALEVDLRGLIDLEHSIQDQRAKTEEAKRSKS------ALEAR----------LEGRQI 349

Query: 323 ERQGKVEQLDELQQQLE----------------KERN------LKSEDATRAFENVKLEM 360
           E QG   +L++LQ+QL+                +ER       LK+E   RA E  + E 
Sbjct: 350 ESQGLAAKLEQLQRQLQNASHKLARQEETRKGMRERGARRIDELKAEYKVRARE--RGEW 407

Query: 361 ESKRQDLEARQKKVEAVVTEVDAITSK 387
           + +R DL A QK++E   +E+ A  +K
Sbjct: 408 QKQRDDLLAEQKELE---SEMAAFVTK 431

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CP41|NUF2_CRYNB Probable kinetochore protein NUF2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=NUF2 PE=3 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 183/447 (40%), Gaps = 95/447 (21%)

Query: 6   YPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFL-----DVLHEDDQ-- 58
           +P L+A +I+  L   +I    E DL  P       +Y  LL  L     + +    Q  
Sbjct: 15  FPLLTAHDILECLAALDIPAQME-DLTKPTAQSTQSIYGSLLEVLMGASINSIEGPKQAL 73

Query: 59  -GQLDFAALE---------QLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIR 108
            G +++  L           L   +++  ++Q M  +   + +      P +F + DL R
Sbjct: 74  LGMMEYKVLSFRSMKRTQINLSRQEMYSDTLQFMMFFKHCRRLALLCGIP-DFAISDLAR 132

Query: 109 PDATRTE-------------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNA---EIAA 152
           PDA R               D +M       E+L +  ++  +L  K  +L     EI A
Sbjct: 133 PDANRLRKVLSGIMNFAKFRDERMQTQARFQENLQKHQKKAVDLRRKTEELETQFQEITA 192

Query: 153 YNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 212
            N     E P  ++   + + L+  + +LN  ++       +LK++   L E+ +     
Sbjct: 193 RNAA---ERPQSEQAQKRNELLKSELLELNSQRLKEVQEYEELKKERQTLLEQVNHNNRI 249

Query: 213 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKT--------- 263
           + Q   Q    +S++VQSP++++R + E       A  +EK  + SFQ+K          
Sbjct: 250 VTQLELQIGSAKSRLVQSPDRIKRHISEMSF----AIQSEKAKLASFQQKARELTNRLEV 305

Query: 264 -TTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLI 322
              LEV  + L  +       +A  E+   +KS      +L+AR          LE + I
Sbjct: 306 IGALEVDLRGLIDLEHSIQDQRAKTEEAKRSKS------ALEAR----------LEGRQI 349

Query: 323 ERQGKVEQLDELQQQLE----------------KERN------LKSEDATRAFENVKLEM 360
           E QG   +L++LQ+QL+                +ER       LK+E   RA E  + E 
Sbjct: 350 ESQGLAAKLEQLQRQLQNASHKLARQEETRKGMRERGARRIDELKAEYKVRARE--RGEW 407

Query: 361 ESKRQDLEARQKKVEAVVTEVDAITSK 387
           + +R DL A QK++E   +E+ A  +K
Sbjct: 408 QKQRDDLLAEQKELE---SEMAAFVTK 431

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q6CJ06|NUF2_KLULA Probable kinetochore protein NUF2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NUF2 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 100/207 (48%), Gaps = 15/207 (7%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHE---D 56
           MSK  +P L  +E+VT L   + ++  E ++  P+  +V  LY +++  F+ V  +    
Sbjct: 1   MSKDVFPLLELSELVTCLQSCDFSLAVEENISKPSSQYVITLYKQIIDTFMGVSPDTLLS 60

Query: 57  DQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE- 115
           ++   D +    ++    +  +V+++ L  +  +    +    +F + DL +PD+ RT  
Sbjct: 61  NEALFDNSGSNDIQQNPAYTETVKVLALNKICFKFFQDIGVS-DFNMMDLYKPDSLRTRR 119

Query: 116 --DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKE 173
                +N  R   E +   D+  S+ E  ++QL ++   YN ++++      E++ +  E
Sbjct: 120 LLSAVVNYARFREERMFDCDKFMSKTEFLLNQLRSKFDDYNYLQQQINKHRNEIELREGE 179

Query: 174 LRQTIQDLNKH---QVS----LRTTLN 193
             +T+Q  NKH   Q+S    L+ TLN
Sbjct: 180 TFETLQQQNKHLDQQISRLKGLQETLN 206

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q9BZD4|NUF2_HUMAN Kinetochore protein Nuf2 OS=Homo sapiens GN=NUF2 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 152/347 (43%), Gaps = 58/347 (16%)

Query: 1   MSKFDYPRLSATEIVT-----ILTETEIAVITENDL-KNPNPDFVSDLYTRLLIFLDVLH 54
           M    +PR +  EIV      ILT  +   +T+NDL  NP P+ +  +Y R L       
Sbjct: 1   METLSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRAL------- 53

Query: 55  EDDQGQLDFAA-LEQLENPDLH--VRSVQIMKLYSMVKEVVTTVN-----CPMN-FTLKD 105
                Q+ +   LE      ++  V    +M+ +     +VT ++     C +N F   D
Sbjct: 54  -----QIVYGIRLEHFYMMPVNSEVMYPHLMEGFLPFSNLVTHLDSFLPICRVNDFETAD 108

Query: 106 LIRPDATRTEDTKMNLLRPIA------EDLTRLDEQRSELEDKISQLNAEIAAYNEV--- 156
           ++ P A RT      ++  I       E       Q     DK+ QLNA   A+ E    
Sbjct: 109 ILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNA---AHQEALMK 165

Query: 157 --RERELPL-----VQEVDAKVKELRQTI-QDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208
             R   +P+      +++   ++EL+Q++ QD ++  + L+   ++ K       ++ ++
Sbjct: 166 LERLDSVPVEEQEEFKQLSDGIQELQQSLNQDFHQKTIVLQEGNSQKKSNISEKTKRLNE 225

Query: 209 TEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQ-------- 260
            +  +V   +    L++KIV SPEKL+   E+ K   ++ ++A +  ++ ++        
Sbjct: 226 LKLSVVSLKEIQESLKTKIVDSPEKLKNYKEKMKDTVQKLKNARQEVVEKYEIYGDSVDC 285

Query: 261 EKTTTLEV--YQKTLKKMSKQSAQMQAIL-EQVNSAKSIEKDYKSLK 304
             +  LEV  YQK ++ +S    ++ +IL E +N    IE D   LK
Sbjct: 286 LPSCQLEVQLYQKKIQDLSDNREKLASILKESLNLEDQIESDESELK 332

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable microtubule binding sites in the outer plate of the kinetochore.

Homo sapiens (taxid: 9606)

>sp|Q7ZW63|NUF2_DANRE Kinetochore protein Nuf2 OS=Danio rerio GN=nuf2 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 207/469 (44%), Gaps = 74/469 (15%)

Query: 1   MSKFDYPRLSATEIVT-----ILTETEIAVITENDL-KNPNPDFVSDLYTRLLIFLDVLH 54
           MS+  +P      IV      +LT  E    T+NDL   P P+ V  LY R+L  L    
Sbjct: 1   MSENTFPVYKVDVIVQFYRTEVLTGQESKHFTKNDLTPTPKPESVQRLYMRILQLLFRFR 60

Query: 55  EDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRT 114
            +    +  +  E ++ P L+     IM +Y  + + +       +F+L DL+ P   RT
Sbjct: 61  PECHYTVPLS--ENIQYPMLYESFAPIMSVYMRMCQFLPVCRV-YDFSLSDLLNPKTKRT 117

Query: 115 EDTKMNLLRPIAEDLTRLDEQRSELE-----------DKISQLNAEIAAYNEVRERELPL 163
               + +L  I ++     +QR E+            D++     EI    +  E+   +
Sbjct: 118 ----ITILSAI-QNFLHFRKQRLEITAAHQQSFRADMDRLQAYTREIKEAEKKIEKLTTI 172

Query: 164 VQEVDAKVKELRQTIQDLN---KHQVSLRTTLN----KLKEKTGALDEKFSQTEFDLVQS 216
             E  A+ KEL   + +L+   +H+    + +N    + K +   L +K +Q + ++   
Sbjct: 173 PPEQQAEAKELASALAELSTNTQHEYQDVSAINEKVAQFKTEIAELSQKLTQRKVEVATL 232

Query: 217 VQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLA----------MQSFQEKTTTL 266
             + + L+S+IV+SPE+L+  +E  +   +  + +++LA          +Q   +    +
Sbjct: 233 KDEISKLKSQIVESPEELKNEMERMRETAKNIKMSKELADERLVELQMLVQCASQVEAEI 292

Query: 267 EVYQKTLKKMSKQSAQMQAILEQVNSAK----SIEKDYKSLKARLNDDVVLDKSLEAKLI 322
           ++  K L+ +    ++ +   E+V S +    S++K+ KSL +   ++  L ++L  KL 
Sbjct: 293 QILLKQLQDLQSSMSKTKQRKEEVQSLEVMNESLQKELKSLSS---EEAQLKRALTMKLD 349

Query: 323 ERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLE---MESKRQDLEARQKKVEAVVT 379
           +         E +QQ+ +++  K E   +  +N+  +   M  KRQ++    KK+E    
Sbjct: 350 K---------ESKQQIRRQK--KKEVKDQQVKNIYGQYDKMHQKRQEI---VKKIEECNR 395

Query: 380 EVDAITSKTKFVKESGAAKLQELASKAEEIVEK----FQQYTNSIGTLL 424
           E      K + ++E+   + Q    KA+EI E+     +QY   I  +L
Sbjct: 396 ETKQFKEKMQALRENCNQRTQ----KAQEIYERLLTTLEQYHKRIEKIL 440

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Danio rerio (taxid: 7955)

>sp|Q6AYL9|NUF2_RAT Kinetochore protein Nuf2 OS=Rattus norvegicus GN=Nuf2 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 203/460 (44%), Gaps = 94/460 (20%)

Query: 1   MSKFDYPRLSATEIVT-----ILTETEIAVITEND-LKNPNPDFVSDLYTRLLIFLDVLH 54
           M    +PR +  EIV      +LT  +   ++++D L NP P+ +  +Y R L       
Sbjct: 1   METLSFPRYNIAEIVVHIRNKLLTGADGKNLSKSDFLPNPKPEVLYMIYMRAL------- 53

Query: 55  EDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVN------------CPMN-F 101
                QL +    +LE+   ++  V I  +Y  + E    V+            C +N F
Sbjct: 54  -----QLVYGV--RLEH--FYMMPVNIEVMYPHIMEGFLPVSNLFFHLDSFMPICRVNDF 104

Query: 102 TLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDE------QRSELEDKISQL-NAEIAAYN 154
            + D++ P A RT      ++  I    T L++      Q     DKI QL NA   A  
Sbjct: 105 EIADILYPKANRTSRFLSGIINFIHFRETCLEKYEEFLLQNKSSVDKIQQLSNAHQEALM 164

Query: 155 EVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNK-LKEKTGALDEKFSQTEFDL 213
           ++ +     V+E + + K+L+  IQ+L       +  LN+  ++KT  L E++++ + D 
Sbjct: 165 KLEKLNSVPVEEQE-EFKQLKDDIQEL-------QHLLNQDFRQKTTLLQERYTKMKSDF 216

Query: 214 -------------VQSVQQNAD-LRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSF 259
                        V S+++  D L+SKIV SPEKL+   E+ K   ++ R A +  M+ +
Sbjct: 217 SEKTKHVNELKLSVVSLKEVQDSLKSKIVDSPEKLKNYKEKMKDTVQKLRSAREEVMEKY 276

Query: 260 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS---AKSIEKDYKSLKARLNDDVVLDKS 316
                  ++Y+ ++  +   S Q++  L Q  S   A + EK    LK  LN        
Sbjct: 277 -------DIYRDSVDCLP--SCQLEVQLYQKKSQDLADNREKLSSILKESLN-------- 319

Query: 317 LEAKLIERQGKVEQLDELQQQLEKERNLKSED-ATRAF------ENVKLEMESKRQDLEA 369
           LE ++     ++++L   +  L +   LK E  AT  F      E+VK    +  +D   
Sbjct: 320 LEGQIDSDSSELKKLKTEENSLIRLMTLKKERLATMQFKINKKQEDVKQYKRTMIEDCNK 379

Query: 370 RQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEI 409
            Q+K +AV  +V AI      +K SG  +L++ A K E++
Sbjct: 380 VQEKRDAVCEQVTAINQDIHKIK-SGIQQLRD-AEKREKL 417

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable microtubule binding sites in the outer plate of the kinetochore.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
255576776	450	kinetochore protein nuf2, putative [Rici	0.981	0.942	0.668	1e-164
224093272	442	predicted protein [Populus trichocarpa]	0.981	0.959	0.654	1e-161
225447975	453	PREDICTED: kinetochore protein Nuf2 [Vit	0.993	0.947	0.636	1e-151
224140705	429	predicted protein [Populus trichocarpa]	0.953	0.960	0.628	1e-146
225430476	453	PREDICTED: probable kinetochore protein	0.995	0.949	0.628	1e-144
147852218	473	hypothetical protein VITISV_036492 [Viti	0.995	0.909	0.601	1e-141
449452094	446	PREDICTED: kinetochore protein Nuf2-like	0.986	0.955	0.562	1e-134
356512606	461	PREDICTED: uncharacterized protein LOC10	0.979	0.917	0.574	1e-132
145336916	440	kinetochore protein Nuf2 [Arabidopsis th	0.983	0.965	0.511	1e-120
357519365	459	hypothetical protein MTR_8g088840 [Medic	0.972	0.915	0.511	1e-115

>gi|255576776|ref|XP_002529275.1| kinetochore protein nuf2, putative [Ricinus communis] gi|223531264|gb|EEF33107.1| kinetochore protein nuf2, putative [Ricinus communis]

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 292/437 (66%), Positives = 353/437 (80%), Gaps = 13/437 (2%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSKFDYPRLS  EI TIL E++IA +TEND+KNPNPDF+SD+YTRLLI LD+L+E+ QGQ
Sbjct: 1   MSKFDYPRLSRAEIATILAESQIAAVTENDIKNPNPDFISDIYTRLLIHLDLLNEEGQGQ 60

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE----- 115
           ++FAALEQLENPD HV SV+IM ++  ++E+V+ V CP+ FTLKDL+RP   RTE     
Sbjct: 61  VEFAALEQLENPDHHVDSVRIMTMFIRIREMVSLVGCPLKFTLKDLLRPQGDRTELYLSA 120

Query: 116 --------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 167
                   DTKMNLLR I E+LT LDEQR E EDKISQLNAEIA YN  RE ELP VQEV
Sbjct: 121 ILNFCLHKDTKMNLLRSIGEELTLLDEQRKEWEDKISQLNAEIAEYNVAREMELPFVQEV 180

Query: 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227
           DAKVKELRQT+ +LN HQ+SLR +  KLKEK G LD + S+ EFDLVQSVQ+NA+LRSKI
Sbjct: 181 DAKVKELRQTVSELNNHQMSLRASSRKLKEKAGELDGEISKAEFDLVQSVQENANLRSKI 240

Query: 228 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 287
           VQSP+KLQR LEEKKS+ EE ++AE+LAMQSFQEKT  LEVY KTL+K+SK   QMQ I 
Sbjct: 241 VQSPDKLQRALEEKKSVWEEVKNAERLAMQSFQEKTAILEVYSKTLRKISKHFNQMQEIH 300

Query: 288 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 347
           E+VNSAKSIEKDYK LKA+L+++ +LDK L+AKL+ERQ K +QLDEL++ LEKE++LK E
Sbjct: 301 EEVNSAKSIEKDYKELKAKLSNEGMLDKKLDAKLVERQAKAQQLDELRKVLEKEKDLKCE 360

Query: 348 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407
           DA R F NVK E+ES+R DLEARQ+KVE +V+EVDAIT KT  VKESGAAK+QEL  K E
Sbjct: 361 DAAREFNNVKSEVESRRVDLEARQRKVEVIVSEVDAITLKTNMVKESGAAKVQELVYKCE 420

Query: 408 EIVEKFQQYTNSIGTLL 424
           +I E+F+QY NS+G ++
Sbjct: 421 QIAEQFEQYRNSMGLVM 437

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093272|ref|XP_002309861.1| predicted protein [Populus trichocarpa] gi|222852764|gb|EEE90311.1| predicted protein [Populus trichocarpa]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 286/437 (65%), Positives = 354/437 (81%), Gaps = 13/437 (2%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSKF+YP LS T++++IL E++IA I E DLKNP PDFV+D+YTRLL++LD+LHE+D+GQ
Sbjct: 1   MSKFEYPMLSRTDMISILAESQIAAIIETDLKNPTPDFVADIYTRLLVYLDLLHEEDEGQ 60

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE----- 115
           ++FAALEQLENP  HV S +IM LY  VKEV+T + CP +FTL+DL++P   RT+     
Sbjct: 61  VEFAALEQLENPHYHVGSARIMNLYIKVKEVITMLQCPADFTLRDLLKPQGDRTQFFLSA 120

Query: 116 --------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 167
                   D+KMN LRPI E+LT LDEQR  LEDKISQLNAEIA YN+ RERELPL QEV
Sbjct: 121 ILNFCLHKDSKMNELRPIGEELTLLDEQRRGLEDKISQLNAEIAEYNDARERELPLAQEV 180

Query: 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227
           D KVKELRQ I DLN HQ+SLR +  KLKE++  +D + S+ EFDLVQSVQ+NA+LRSKI
Sbjct: 181 DGKVKELRQEIADLNNHQMSLRASYRKLKERSSEMDGEISRAEFDLVQSVQENANLRSKI 240

Query: 228 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 287
           VQSP+KLQR LEEKKS+REEAR+AE+LAMQSF+ KT  LEVY K LKKMSK   QMQAI 
Sbjct: 241 VQSPDKLQRALEEKKSVREEARNAERLAMQSFEAKTAVLEVYTKALKKMSKHFDQMQAIH 300

Query: 288 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 347
           EQVNSAKSIEKDYK+LKA+L+DD ++DKSL+AKL+E Q K +QL+EL++ LEKER++K E
Sbjct: 301 EQVNSAKSIEKDYKALKAKLSDDGLMDKSLDAKLVELQMKAQQLNELKKLLEKERDMKCE 360

Query: 348 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407
           +AT+ +  +K E+ESKR DLEARQ++VEAV++EVDAITSKT  V ESGAAK+Q+L SK E
Sbjct: 361 EATKEYNTIKSEVESKRHDLEARQRRVEAVLSEVDAITSKTNMVNESGAAKVQKLVSKRE 420

Query: 408 EIVEKFQQYTNSIGTLL 424
           EI E+F++Y NSI  LL
Sbjct: 421 EIAEQFKKYKNSIEPLL 437

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447975|ref|XP_002269064.1| PREDICTED: kinetochore protein Nuf2 [Vitis vinifera] gi|298204517|emb|CBI23792.3| unnamed protein product [Vitis vinifera]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 282/443 (63%), Positives = 340/443 (76%), Gaps = 14/443 (3%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSKF+YP +  +EI+ IL E++IA + + DL NPNPDFVSDLYTRLLI LD L ED  GQ
Sbjct: 1   MSKFEYPMIPRSEIIAILNESKIATVYDEDLINPNPDFVSDLYTRLLIHLDSLQEDP-GQ 59

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE----- 115
           ++FAALE+LENPD H  SV+IM LYS +KE+V +++CP  FTLKDLIRPD  RTE     
Sbjct: 60  VEFAALERLENPDWHRDSVRIMNLYSKIKELVASLDCPWKFTLKDLIRPDRDRTEKFLGT 119

Query: 116 --------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 167
                   D+KMN LRPI E+   LDE+R  LED+ISQL+AEI  YNE RER +PLVQE+
Sbjct: 120 ILNFFLHKDSKMNELRPIVEESNLLDEERKLLEDRISQLDAEITDYNEARERAMPLVQEI 179

Query: 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227
           + KVK+LRQ I  LN  Q+SLRT+  K+KEK   +DEK S  EF LVQSVQ+NA+LRSKI
Sbjct: 180 EVKVKDLRQAIPSLNNQQMSLRTSFRKMKEKVAEMDEKISSAEFALVQSVQENANLRSKI 239

Query: 228 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 287
           VQSP+KLQRTLEEKKS+R EA++AE+ AMQSFQEK+  +EVY K  KKMSK  AQMQAI 
Sbjct: 240 VQSPDKLQRTLEEKKSVRVEAKNAERSAMQSFQEKSAIVEVYTKAGKKMSKHFAQMQAIQ 299

Query: 288 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 347
           EQVNSAK+IEKD K LK +L+++ VLDKS EAKL+ERQ KVEQLDEL++QLEKERN K E
Sbjct: 300 EQVNSAKAIEKDLKVLKTKLSEEGVLDKSFEAKLLERQRKVEQLDELRKQLEKERNFKCE 359

Query: 348 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407
           +A +   NVKL +ESKR++LEARQ+KVEA   EVDA T K   VKESGAAK Q+L  K E
Sbjct: 360 EAAKELNNVKLAVESKRRELEARQRKVEAEAAEVDATTLKINSVKESGAAKQQKLTRKGE 419

Query: 408 EIVEKFQQYTNSIGTLLPVTEIE 430
           EIV++F QY NSIG LLP  ++E
Sbjct: 420 EIVKEFHQYANSIGVLLPRIQVE 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140705|ref|XP_002323719.1| predicted protein [Populus trichocarpa] gi|222866721|gb|EEF03852.1| predicted protein [Populus trichocarpa]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/425 (62%), Positives = 329/425 (77%), Gaps = 13/425 (3%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSKF+YP L   ++++IL E++IA + ENDLKNP PDFVSD+YTRLL++LD+LHE+D GQ
Sbjct: 1   MSKFEYPILPRADMISILAESQIAAVIENDLKNPTPDFVSDIYTRLLVYLDLLHEEDGGQ 60

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE----- 115
           ++FAALEQLENP  HV S + +  Y  +KEV+  + CP  FTLKDL++P A RT+     
Sbjct: 61  VEFAALEQLENPHYHVGSARTVNNYIKIKEVIALLQCPAVFTLKDLLKPQADRTQFFLSA 120

Query: 116 --------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 167
                   D+KMN LRPI E+L+ LDEQR E +DKISQLNAEIA YN+ RERELPLVQ+V
Sbjct: 121 ILNFCLHKDSKMNELRPIGEELSLLDEQRREFDDKISQLNAEIAEYNDARERELPLVQDV 180

Query: 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227
           D KVKELRQ I DLN HQ+S R T  KLKE +  +D + S+ EFDLVQSVQ+N +LRSKI
Sbjct: 181 DGKVKELRQRIGDLNNHQMSQRATYRKLKEMSTEMDGEISRAEFDLVQSVQENVNLRSKI 240

Query: 228 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 287
           VQSP+KLQR LEEKKS+R++AR+AE+LAMQSFQ KT  LEVY K  KKMSK   QMQAI 
Sbjct: 241 VQSPDKLQRALEEKKSVRQDARNAERLAMQSFQAKTDVLEVYTKASKKMSKHFNQMQAIH 300

Query: 288 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 347
           EQVNSAKSIEKDYK+LKA+L  D ++DKSL AKL+E Q K +QLDE ++ LEKER+ K E
Sbjct: 301 EQVNSAKSIEKDYKALKAKLGYDELMDKSLGAKLVELQVKAQQLDECKKLLEKERDAKCE 360

Query: 348 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407
           +AT  F N+K E+ES+R DL ARQ+KVE V+T+VDAITSKT  VKESG A++Q+L  K E
Sbjct: 361 EATEEFNNIKSEVESRRHDLGARQRKVEDVLTKVDAITSKTNMVKESGVAEVQKLVHKRE 420

Query: 408 EIVEK 412
           EI E+
Sbjct: 421 EIAEQ 425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430476|ref|XP_002283312.1| PREDICTED: probable kinetochore protein NUF2 [Vitis vinifera] gi|296082133|emb|CBI21138.3| unnamed protein product [Vitis vinifera]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 279/444 (62%), Positives = 339/444 (76%), Gaps = 14/444 (3%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSKF+YP L  ++I+ IL E++IA + E++L NPNPDFVSDLYTRLLI LD L ED  GQ
Sbjct: 1   MSKFEYPMLPRSDIIAILNESKIATVYEDNLINPNPDFVSDLYTRLLIHLDSLQEDP-GQ 59

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE----- 115
           ++FAALEQLENPD H  SV++M LYS +KE+V ++ CP  FTLKDLIRPD  RTE     
Sbjct: 60  IEFAALEQLENPDWHRDSVRVMNLYSKIKELVASLECPKKFTLKDLIRPDRDRTERFLGT 119

Query: 116 --------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 167
                   D+KMN LRPI E+LT LDEQR++ +D+ISQL+AEIA  +E RERE PLV+EV
Sbjct: 120 ILNFFLHKDSKMNDLRPIVEELTLLDEQRNQFKDRISQLDAEIADCSEARERERPLVEEV 179

Query: 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227
           + KVKELRQTI  LN  Q+SLR +  K+KEK   +DEK S  EF LVQSVQ+NA+LRSKI
Sbjct: 180 EVKVKELRQTIPSLNNQQMSLRASFRKMKEKVTEMDEKISSAEFALVQSVQENANLRSKI 239

Query: 228 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 287
           +QSP+KLQR LEEKKS R E ++AEK AMQSFQEK+  LEVY K  KKMSK  AQMQ I 
Sbjct: 240 IQSPDKLQRALEEKKSDRIEVKNAEKSAMQSFQEKSAILEVYTKAGKKMSKHFAQMQTIQ 299

Query: 288 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 347
           EQVNSAK+IEKD K +K +L+++ VL+KSLEAKL+E QGKVEQLD+L++QLEKER+ K E
Sbjct: 300 EQVNSAKAIEKDLKVIKTKLSEEGVLEKSLEAKLVEWQGKVEQLDDLRKQLEKERDFKCE 359

Query: 348 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407
           +A +   NVKL +ES R +LEARQKKVEA   EVD IT K   VKESGAAK QEL SK E
Sbjct: 360 EAAKELNNVKLAVESSRHELEARQKKVEAQAAEVDGITLKINSVKESGAAKQQELISKGE 419

Query: 408 EIVEKFQQYTNSIGTLLPVTEIES 431
           EI+++F  Y NSIG LLP  ++E+
Sbjct: 420 EIMKEFHLYANSIGVLLPRIQVET 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852218|emb|CAN82250.1| hypothetical protein VITISV_036492 [Vitis vinifera]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 279/464 (60%), Positives = 338/464 (72%), Gaps = 34/464 (7%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSKF+YP L  ++I+ IL E++IA + E++L NPNPDFVSDLYTRLLI LD L ED  GQ
Sbjct: 1   MSKFEYPMLPRSDIIAILNESKIATVYEDNLINPNPDFVSDLYTRLLIHLDSLQEDP-GQ 59

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE----- 115
           ++FAALEQLENPD H  SV++M LYS +KE+V ++ CP  FTLKDLIRPD  RTE     
Sbjct: 60  IEFAALEQLENPDWHRDSVRVMNLYSKIKELVASLECPKKFTLKDLIRPDRDRTERFLGT 119

Query: 116 ----------------------------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLN 147
                                       D+KMN LRPI E+LT LDEQR++ +D+ISQL+
Sbjct: 120 ILNFFLHKKCKGISPKGPMTKTHKEETKDSKMNDLRPIVEELTLLDEQRNQFKDRISQLD 179

Query: 148 AEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 207
           AEIA  +E RERE PLV+EV+ KVKELRQTI  LN  Q+SLR +  K+KEK   +DEK S
Sbjct: 180 AEIADCSEARERERPLVEEVEVKVKELRQTIPSLNNQQMSLRASFRKMKEKVTEMDEKIS 239

Query: 208 QTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLE 267
             EF LVQSVQ+NA+LRSKI+QSP+KLQR LEEKKS R E ++AEK AMQSFQEK+  LE
Sbjct: 240 SAEFALVQSVQENANLRSKIIQSPDKLQRALEEKKSDRIEVKNAEKSAMQSFQEKSAILE 299

Query: 268 VYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGK 327
           VY K  KKMSK  AQMQ I EQVNSAK+IEKD K +K +L+++ VL KSLEAKL+E QGK
Sbjct: 300 VYTKAGKKMSKHFAQMQTIQEQVNSAKAIEKDLKVIKTKLSEEGVLXKSLEAKLVEWQGK 359

Query: 328 VEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK 387
           VEQLD+L++QLEKER+ K E+A +   NVKL +ES R +LEARQKKVEA   EVD IT K
Sbjct: 360 VEQLDDLRKQLEKERDFKCEEAAKELNNVKLAVESSRHELEARQKKVEAQAAEVDGITLK 419

Query: 388 TKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEIES 431
              VKESGAAK QEL SK EEI+++F  Y NSIG LLP  ++E+
Sbjct: 420 INSVKESGAAKQQELISKGEEIMKEFHLYANSIGVLLPRIQVET 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452094|ref|XP_004143795.1| PREDICTED: kinetochore protein Nuf2-like [Cucumis sativus]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/439 (56%), Positives = 320/439 (72%), Gaps = 13/439 (2%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSK+++PRL   +IV +L + +IA +TE DL  P+PD VSDLYT L+I+LD+LHE+DQGQ
Sbjct: 1   MSKYEFPRLPRADIVLLLADNQIAAVTERDLLQPSPDLVSDLYTHLMIYLDLLHEEDQGQ 60

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE----- 115
           ++FAAL+QLENPDLH+ SV  MKL++ +K  + +++CP  FTLKDLI+P+  RTE     
Sbjct: 61  IEFAALDQLENPDLHMVSVPTMKLHNKIKHFIASLDCPKKFTLKDLIKPETDRTEIFLSA 120

Query: 116 --------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 167
                   D KMN   P+  +L    +Q+ E E K SQLNAEI  YNE RERE+P VQE+
Sbjct: 121 ILNFGIHKDAKMNFHAPVMNELDTFADQQREWEVKTSQLNAEITEYNEAREREMPFVQEI 180

Query: 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227
           DAKVKEL QTI  LN  QVSLR ++ KLKEK G +DEK S  EF LVQSVQ+NA+LRSKI
Sbjct: 181 DAKVKELHQTIGGLNNQQVSLRASIRKLKEKAGEMDEKISNAEFLLVQSVQENANLRSKI 240

Query: 228 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 287
           VQSP+KLQR LEEKK  REEA++AEKLAMQ+ QEKT  +EVY K  KKM K  + MQ I 
Sbjct: 241 VQSPDKLQRALEEKKLAREEAKNAEKLAMQACQEKTGIVEVYSKVSKKMLKHLSLMQTIH 300

Query: 288 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 347
           EQVNSAKS+E+++K+LK +L+D+ V DKSL+ KL+E Q KV QL +L +Q EKER++  E
Sbjct: 301 EQVNSAKSVEREFKALKVKLSDEEVQDKSLQVKLVELQAKVHQLKDLVRQTEKERDVTCE 360

Query: 348 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407
           +AT+    V+ ++ES R DLE RQ+ VEAV  EVD +TSKT  +++S   K QEL +K E
Sbjct: 361 EATKDLIAVRSQVESLRHDLEQRQRNVEAVFMEVDVLTSKTNSIRQSSVLKQQELLNKCE 420

Query: 408 EIVEKFQQYTNSIGTLLPV 426
            I+++F QYTN +G L+ V
Sbjct: 421 SIIKEFHQYTNLVGALMEV 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512606|ref|XP_003525009.1| PREDICTED: uncharacterized protein LOC100815227 [Glycine max]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/437 (57%), Positives = 323/437 (73%), Gaps = 14/437 (3%)

Query: 2   SKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQL 61
           S ++YPRL   EIVTIL + +IA +TE D  NPNPDF+SDLYTR+LI LD+L E+D  QL
Sbjct: 4   SNYEYPRLRRPEIVTILAQLQIANVTEQDFTNPNPDFISDLYTRVLIHLDILLEEDNEQL 63

Query: 62  DFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE------ 115
           +F ALE LENPD H+ SV+ +KLY+ + EV+TT+ CP  FTL DL+ PD  RT+      
Sbjct: 64  EFHALEHLENPDFHLDSVRAVKLYNQINEVLTTLECPRKFTLADLLMPDPHRTDLFLGSL 123

Query: 116 -------DTKMNLLRPIAEDLTRLDEQRSELE-DKISQLNAEIAAYNEVRERELPLVQEV 167
                  D +MN +  I E++  L+ QR+ELE ++I QL AEI+  NE +ERE+PLV+EV
Sbjct: 124 LNFCLDRDARMNSVSEIVEEVNALEAQRTELEENRILQLKAEISECNEAKEREMPLVEEV 183

Query: 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227
           +AKVKEL+QTI  LN +Q SLR+TL KLKEKTG  DEK S  EF LVQ+VQ+NA+LRSKI
Sbjct: 184 EAKVKELKQTIAVLNSNQSSLRSTLRKLKEKTGETDEKISNAEFTLVQNVQENANLRSKI 243

Query: 228 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 287
            QSP+K+QR LEEKK  REEAR+AE+LAMQ+F EKT  +EV+ K  KKMSK +  MQ I 
Sbjct: 244 SQSPDKVQRALEEKKLAREEARNAERLAMQAFHEKTALVEVFSKVYKKMSKHNKLMQDIQ 303

Query: 288 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 347
           EQVNSAKSIEKD K+LKA+L+D+ +L+KSLEAKL+E+Q KVEQ++E ++QLEKE N+  E
Sbjct: 304 EQVNSAKSIEKDLKALKAKLSDEEILEKSLEAKLVEKQSKVEQMEESRKQLEKESNIMWE 363

Query: 348 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407
           +AT+   + K ++ESKR   E RQK VEAV++EVDAI+SK   VKE+GA K+  L  K E
Sbjct: 364 EATKYLSSTKSDVESKRSATETRQKNVEAVLSEVDAISSKIISVKEAGAVKVALLVRKCE 423

Query: 408 EIVEKFQQYTNSIGTLL 424
           E+VE F  Y N I  ++
Sbjct: 424 ELVEAFHNYANPIARVI 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336916|ref|NP_176296.2| kinetochore protein Nuf2 [Arabidopsis thaliana] gi|19423962|gb|AAL87331.1| unknown protein [Arabidopsis thaliana] gi|22136892|gb|AAM91790.1| unknown protein [Arabidopsis thaliana] gi|332195644|gb|AEE33765.1| kinetochore protein Nuf2 [Arabidopsis thaliana]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/438 (51%), Positives = 325/438 (74%), Gaps = 13/438 (2%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MS ++YPRLS ++I+T L + +IA +TE DLK P  DFVS+LYTR+LI+LD L E+++GQ
Sbjct: 1   MSAYEYPRLSRSDIITALKDAQIASVTETDLKTPTSDFVSELYTRILIYLDALDEEEKGQ 60

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE----- 115
           +DF ALEQLENPD H  S+Q MKLY  VK+++  ++CP+  + KDL+RP+++RTE     
Sbjct: 61  VDFEALEQLENPDHHATSMQAMKLYCKVKDMLEMLDCPLPISFKDLLRPESSRTEFFISA 120

Query: 116 --------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 167
                   D+KM+L+RP AE+L  LDEQR + E K++QLNAEI  ++E  ER+LP VQE+
Sbjct: 121 LLNYGLYKDSKMDLIRPKAEELGLLDEQRKQCEAKVAQLNAEIGEFDEAVERDLPFVQEL 180

Query: 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227
           +A +++L + I +LN  Q+SLR T  K++EK+  +D + S+ EFDLV++VQ+NA+LRS+I
Sbjct: 181 EANIEQLNKKILELNNQQMSLRATFQKMREKSTQMDNEISKAEFDLVETVQENANLRSQI 240

Query: 228 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 287
           VQSP+KLQ  LEEKK +  E + AE+ AM +FQEK   LEV++K LKK+ K S+Q+Q I 
Sbjct: 241 VQSPDKLQGALEEKKLVLGETKKAEQSAMVTFQEKAAILEVFEKALKKILKSSSQLQLIN 300

Query: 288 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 347
           EQV +AK++EK++K+LK +L++D V  KSLEAK++ER+  VEQL+E  +QLEKE+ +  +
Sbjct: 301 EQVTNAKTVEKEFKALKDKLSEDGVAYKSLEAKVVERERIVEQLNESLKQLEKEKAVMFD 360

Query: 348 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407
           D T+    +K+E+ES+R++LE RQ  VE+VV  VD  T+KT  V++SG AK+++LA+K E
Sbjct: 361 DWTKQLNELKVEVESRRRELETRQTNVESVVAMVDDNTAKTNQVRQSGEAKVKKLAAKYE 420

Query: 408 EIVEKFQQYTNSIGTLLP 425
           EIV++F +YT S    LP
Sbjct: 421 EIVKQFHEYTVSFDAFLP 438

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519365|ref|XP_003629971.1| hypothetical protein MTR_8g088840 [Medicago truncatula] gi|355523993|gb|AET04447.1| hypothetical protein MTR_8g088840 [Medicago truncatula]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/436 (51%), Positives = 300/436 (68%), Gaps = 16/436 (3%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MS ++YPRL   EIV +L   +IA +TEND+ NP    V DLYTR+L +LD LH++D GQ
Sbjct: 3   MSNYEYPRLRRPEIVQLLNNFQIATVTENDISNPRTGVVLDLYTRILNYLDFLHDEDNGQ 62

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCP--MNFTLKDLIRPDATRTE--- 115
           LDF ALE LENPDLHV S+  +KLY+ +KE++  + CP    F   DL++PD  RTE   
Sbjct: 63  LDFDALEHLENPDLHVGSIHAIKLYNKIKEMLNLLECPKKYTFNFADLLKPDPHRTEFFL 122

Query: 116 ----------DTKMNLLRPIAEDLTRLDEQRSELE-DKISQLNAEIAAYNEVRERELPLV 164
                     D ++N +  I ++   L+++  E+E + I+QL   IA  NE RERELP V
Sbjct: 123 GALLNFCLDRDGRLNAISEIVDEFNALEQKIVEIEENNITQLKLAIAECNEARERELPSV 182

Query: 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 224
           QEVDAKVKELRQTI +LN  Q+SLR+T+ KLKEKT  +D+K S  E+ LVQ+VQ++ +L 
Sbjct: 183 QEVDAKVKELRQTIANLNNKQMSLRSTIKKLKEKTVEMDDKISDAEYKLVQNVQEHGNLL 242

Query: 225 SKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQ 284
           SKI QSP+K+QR LEEKK  REEAR+AE+LAM +F EKT  +EV  K  KKMSK   Q+Q
Sbjct: 243 SKIAQSPDKVQRALEEKKLAREEARNAERLAMHNFHEKTALVEVISKVHKKMSKHYKQVQ 302

Query: 285 AILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL 344
              EQVNSAK+IEKD K+LKA+L D+ VL+KSLEAKL+E+Q KVE  + L +Q EKE   
Sbjct: 303 VTQEQVNSAKTIEKDLKTLKAKLGDEEVLEKSLEAKLVEKQTKVEHTEGLNKQSEKECGF 362

Query: 345 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELAS 404
             ++ T+   ++K E ESKR+D+E RQ+ VEA++++VD I S+   VKES   K+ ++  
Sbjct: 363 MMDEGTKYLSSIKSEAESKRRDIETRQRNVEAILSKVDVINSRETSVKESATLKVDQMEI 422

Query: 405 KAEEIVEKFQQYTNSI 420
           K  E+ E F++Y+NS 
Sbjct: 423 KCSELFEVFRKYSNSF 438

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
TAIR|locus:2206071	440	AT1G61000 [Arabidopsis thalian	0.983	0.965	0.474	7.7e-103
ZFIN|ZDB-GENE-040426-1121	454	nuf2 "NUF2, NDC80 kinetochore	0.921	0.876	0.202	1.1e-14
POMBASE|SPAC27F1.04c	441	nuf2 "spindle pole body protei	0.875	0.857	0.188	3.5e-10
ZFIN|ZDB-GENE-050208-275	2037	golga4 "golgin A4" [Danio reri	0.652	0.138	0.243	4.1e-10
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.724	0.305	0.222	1e-09
UNIPROTKB|F1SQ11	1411	EEA1 "Uncharacterized protein"	0.798	0.244	0.229	1.2e-09
ASPGD|ASPL0000042966	1153	AN2480 [Emericella nidulans (t	0.689	0.258	0.238	1.2e-09
ZFIN|ZDB-GENE-010328-15	1048	hip1 "huntingtin interacting p	0.618	0.254	0.226	1.6e-09
UNIPROTKB|F1NM49	1936	MYH15 "Uncharacterized protein	0.685	0.152	0.235	1.7e-09
UNIPROTKB|F1NKL9	1943	MYH15 "Uncharacterized protein	0.685	0.152	0.235	1.8e-09

TAIR|locus:2206071 AT1G61000 [Arabidopsis thaliana (taxid:3702)]

 Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
 Identities = 208/438 (47%), Positives = 301/438 (68%)

Query:     1 MSKFDYPRLSXXXXXXXXXXXXXXXXXXNDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
             MS ++YPRLS                   DLK P  DFVS+LYTR+LI+LD L E+++GQ
Sbjct:     1 MSAYEYPRLSRSDIITALKDAQIASVTETDLKTPTSDFVSELYTRILIYLDALDEEEKGQ 60

Query:    61 LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE----- 115
             +DF ALEQLENPD H  S+Q MKLY  VK+++  ++CP+  + KDL+RP+++RTE     
Sbjct:    61 VDFEALEQLENPDHHATSMQAMKLYCKVKDMLEMLDCPLPISFKDLLRPESSRTEFFISA 120

Query:   116 --------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 167
                     D+KM+L+RP AE+L  LDEQR + E K++QLNAEI  ++E  ER+LP VQE+
Sbjct:   121 LLNYGLYKDSKMDLIRPKAEELGLLDEQRKQCEAKVAQLNAEIGEFDEAVERDLPFVQEL 180

Query:   168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227
             +A +++L + I +LN  Q+SLR T  K++EK+  +D + S+ EFDLV++VQ+NA+LRS+I
Sbjct:   181 EANIEQLNKKILELNNQQMSLRATFQKMREKSTQMDNEISKAEFDLVETVQENANLRSQI 240

Query:   228 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 287
             VQSP+KLQ  LEEKK +  E + AE+ AM +FQEK   LEV++K LKK+ K S+Q+Q I 
Sbjct:   241 VQSPDKLQGALEEKKLVLGETKKAEQSAMVTFQEKAAILEVFEKALKKILKSSSQLQLIN 300

Query:   288 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSE 347
             EQV +AK++EK++K+LK +L++D V  KSLEAK++ER+  V             + +  +
Sbjct:   301 EQVTNAKTVEKEFKALKDKLSEDGVAYKSLEAKVVERERIVEQLNESLKQLEKEKAVMFD 360

Query:   348 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407
             D T+    +K+E+ES+R++LE RQ  VE+VV  VD  T+KT  V++SG AK+++LA+K E
Sbjct:   361 DWTKQLNELKVEVESRRRELETRQTNVESVVAMVDDNTAKTNQVRQSGEAKVKKLAAKYE 420

Query:   408 EIVEKFQQYTNSIGTLLP 425
             EIV++F +YT S    LP
Sbjct:   421 EIVKQFHEYTVSFDAFLP 438

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0007067 "mitosis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

ZFIN|ZDB-GENE-040426-1121 nuf2 "NUF2, NDC80 kinetochore complex component, homolog" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 85/419 (20%), Positives = 183/419 (43%)

Query:    29 NDLK-NPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSM 87
             NDL   P P+ V  LY R+L  L     +    +  +  E ++ P L+     IM +Y  
Sbjct:    34 NDLTPTPKPESVQRLYMRILQLLFRFRPECHYTVPLS--ENIQYPMLYESFAPIMSVYMR 91

Query:    88 VKEVVTTVNCPMNFTLKDLIRPDATRTE---DTKMNLL--RPIAEDLTRLDEQ--RSELE 140
             + + +       +F+L DL+ P   RT        N L  R    ++T   +Q  R+++ 
Sbjct:    92 MCQFLPVCRV-YDFSLSDLLNPKTKRTITILSAIQNFLHFRKQRLEITAAHQQSFRADM- 149

Query:   141 DKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN---KHQVSLRTTLNK--- 194
             D++     EI    +  E+   +  E  A+ KEL   + +L+   +H+    + +N+   
Sbjct:   150 DRLQAYTREIKEAEKKIEKLTTIPPEQQAEAKELASALAELSTNTQHEYQDVSAINEKVA 209

Query:   195 -LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEK 253
               K +   L +K +Q + ++     + + L+S+IV+SPE+L+  +E  +   +  + +++
Sbjct:   210 QFKTEIAELSQKLTQRKVEVATLKDEISKLKSQIVESPEELKNEMERMRETAKNIKMSKE 269

Query:   254 LAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVL 313
             LA +   E    ++   +   ++     Q+Q +   ++  K  +++ +SL+  +N+ +  
Sbjct:   270 LADERLVELQMLVQCASQVEAEIQILLKQLQDLQSSMSKTKQRKEEVQSLEV-MNESLQK 328

Query:   314 D-KSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKLEMESKRQDLEARQK 372
             + KSL ++  + +  +             R  K E   +  +N+  + +   Q  +   K
Sbjct:   329 ELKSLSSEEAQLKRALTMKLDKESKQQIRRQKKKEVKDQQVKNIYGQYDKMHQKRQEIVK 388

Query:   373 KVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEIES 431
             K+E    E      K + ++E+   + Q+     E ++   +QY   I  +L  T  ++
Sbjct:   389 KIEECNRETKQFKEKMQALRENCNQRTQKAQEIYERLLTTLEQYHKRIEKILVETNADA 447

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007507 "heart development" evidence=IMP

GO:0031262 "Ndc80 complex" evidence=ISS

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

POMBASE|SPAC27F1.04c nuf2 "spindle pole body protein Nuf2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 173 (66.0 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 77/409 (18%), Positives = 187/409 (45%)

Query:    30 DLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMV 88
             +L  P    V  LY   L +F+ +  ++ + +++ +  + +EN ++   S++    Y ++
Sbjct:    30 ELDQPTSKAVIPLYEEFLDLFMGLTRQNLEEKVN-SLQDSVENFEIIHESLRFTVFYQIL 88

Query:    89 KEVVTTVNCPMNFTLKDLIRPDATRTE---DTKMNLLRPIAEDLTRLDE---QRSELEDK 142
              + +  + C  +FT++DL++PD  R +      +N  +   E L + D+   +R  L + 
Sbjct:    89 SQFMQNI-CFHDFTIQDLLKPDRNRLQLILSAVINFAKLREERLQQFDDDIQKRESLLET 147

Query:   143 ISQLNAEIAAYNEV----RERELP---LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKL 195
              + L+A+     E     ++R+L    ++++ + + +E+ Q++ +  +    +RT  +++
Sbjct:   148 YTLLDAQRKDLEEKVLLSQDRKLESEAIIKQNEERNEEMFQSLIEDKRLCSQVRTEYDRI 207

Query:   196 KEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK-SIREEARDAEKL 254
             + +   L  ++   +  +  ++++   L+S IV SPEKL+  + +    I+ +     +L
Sbjct:   208 RMEASELKIRYHNVDSLMASTLEEIEKLQSSIVHSPEKLKGKIADTSLRIQNDRSQQVEL 267

Query:   255 AMQS--FQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVV 312
               +S     K  +L++ +  L    K   +    L+++  A  +     S    L D + 
Sbjct:   268 DKKSKILHTKLNSLQLIEGDLNACLKVLEECLVELDKLEHATVL----LSTNQELCDQIE 323

Query:   313 LDKS-LEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKLEMESKRQDLEARQ 371
             ++K  LE +  +   ++             RN K E A +  +N++ E +   Q+   R 
Sbjct:   324 INKKKLEFRKEQLLKQLSNAQEKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQE---RN 380

Query:   372 KKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 420
             KK++    E +   +  +  ++  A   +EL S+   I  +F++  + +
Sbjct:   381 KKIQ----ETEKKNAMIEMTEQKIAGMREELESQISSITMEFEKLKSHV 425

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IMP

GO:0031262 "Ndc80 complex" evidence=TAS

GO:0031617 "NMS complex" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0044732 "mitotic spindle pole body" evidence=IDA

GO:0051455 "attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation" evidence=IMP

ZFIN|ZDB-GENE-050208-275 golga4 "golgin A4" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 74/304 (24%), Positives = 145/304 (47%)

Query:   125 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKE-----LRQTIQ 179
             ++E+L     Q S+LE  I+ L  ++A+    +E  + L+ +  +K KE     + +T++
Sbjct:  1314 VSENLKANILQISDLESAINDLKTQLASSITEKEEAISLLNQQHSKDKERVTSQMGETVE 1373

Query:   180 DLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN-ADLRSKIVQSPEKLQRTL 238
              L K +  L+  ++ L+ K   L +KFSQ+    V+S+Q   AD+  +I +   +LQ TL
Sbjct:  1374 KLEKEKTLLQEQVDSLRNKFSELKKKFSQSH-STVKSLQDKLADMERQIAEKDGQLQ-TL 1431

Query:   239 EEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEK 298
                 S+   +    ++  Q+  EK   +      L+  SK+   ++   EQ+   +  E+
Sbjct:  1432 TA--SVDNHSISKSEMD-QALSEKDQRVHALTSELESCSKKVCDLE---EQLQ-LRVKER 1484

Query:   299 DYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKL 358
             D   L A L     + +S + +L+++  +                   +   +  E+ K 
Sbjct:  1485 D--QLAADLQQHHNIRESEKTELMKQVQEAQDQSSQNGALMQKTEESLQSLRKDIESAKQ 1542

Query:   359 EMESKRQDLEARQKKVEAVVTEVDAI-TSKTKFVKESGAAKLQELASKAEEIVEKFQ-QY 416
             E+ES+R+D E  ++K E +  + +A+  ++ K   E+G  K+ EL  KAE+ +   + Q 
Sbjct:  1543 ELESQRKDFE--REKAEILKEKKEAVKAAQVKASSETGV-KVAELKKKAEQKIGMIRKQL 1599

Query:   417 TNSI 420
             T+ I
Sbjct:  1600 TSQI 1603

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 174 (66.3 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 75/337 (22%), Positives = 165/337 (48%)

Query:   101 FTLKD--LIRP---DATRTEDT--KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY 153
             FT K+  LIR    +  RT +   ++ +   + +++T  DE+  ++E  + QL A+ +  
Sbjct:   377 FTTKETELIRSYEDEKKRTAELLERLEMYEKMNKNIT--DEKDFQIEKLVDQLEAKQSEQ 434

Query:   154 --------NEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK 205
                     NE+ + +  L      + + L+  I +L++ Q       N+L+ K   L E 
Sbjct:   435 QTTTNNLQNEISQLKQQLASNQSTESQALQSKITELSQLQSEFEKLQNQLQSKDSELLET 494

Query:   206 FSQTEFDLVQSVQQNADLRSKIVQSPE-KLQRTLEEKKSIREEARDAE-KLAMQS--FQE 261
              S+ +  L++   +++  + + ++S E  LQ+TL++ +S  +E ++ + +L  QS   + 
Sbjct:   495 -SKKQSALLEQQSEDSQSKDEKLKSVELNLQQTLQQLQSKDQELQNVKSQLEQQSEDSES 553

Query:   262 KTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKL 321
             K   L+  + TL++  +Q   +++ LEQ  S  +  KD K     LN    L +S +++L
Sbjct:   554 KDQKLKSVELTLQQTLQQLQDVKSQLEQ-QSEHNESKDEKLKSIELNLQQQL-QSKDSEL 611

Query:   322 IERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEV 381
               +  ++              + +S +      +VK ++ SK  +L+++ +++    +++
Sbjct:   612 SSKDEQLKCLESELSSVKEQLSSQSSNTDSELSSVKDQLLSKDSELKSKDEQLSNKDSQI 671

Query:   382 DAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTN 418
              +I S  + VK+  ++K QEL S  +++  K +Q +N
Sbjct:   672 KSIESDLQSVKDQLSSKDQELQSTKDQLSSKDEQLSN 708

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1SQ11 EEA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 86/374 (22%), Positives = 164/374 (43%)

Query:    51 DVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPD 110
             D+  +   G+ + A L QL+  + H+   Q+ +L   +K    +        L D ++  
Sbjct:   548 DLYAKIQAGEGETAVLNQLQEKN-HILQEQVTQLTEKLKNQSESHKQAQE-NLHDQVQEQ 605

Query:   111 ATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV--------RERELP 162
                    +  +L  +   ++ L  Q +E ++K+SQL+ +I A  E+          +   
Sbjct:   606 KAHLRAAQDRVLS-LEASISELSSQLNESKEKVSQLDIQIKAKTELLLSAEAAKTAQRAD 664

Query:   163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 222
             L   +D     L+   Q+LNK    L     KL++K     E   Q E  L +  +++  
Sbjct:   665 LQNHLDTAQNALQDKQQELNKITTQLDQVTTKLQDK----QEHCGQLESHLKEYKEKHLS 720

Query:   223 LRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ 282
             L  K     E+L+  +++ ++   E + +++ A+Q  Q++       +    ++SKQ  +
Sbjct:   721 LEQKT----EELEGQIKKLEADSLEVKASKEQALQDLQQQRQLNTDLELRATELSKQ-LE 775

Query:   283 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXR 342
             M+   E V+S K ++   KS +A  N   +L K  E K I +Q +V              
Sbjct:   776 MEK--ETVSSTK-LDLQKKS-EALENIKQMLTKQEEEKKILKQ-EVENLSQNAKMQQKEL 830

Query:   343 NLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES--GAAKLQ 400
             N K + A    + VK+E E+   +L A ++K+  V   +    SK++F KES  G A + 
Sbjct:   831 NNKIQAAVTELQKVKMEKETLVTELSAAKEKLSKVSDSLK--NSKSEFEKESQKGKAAIL 888

Query:   401 ELASKAEEIVEKFQ 414
             +L    +++  + Q
Sbjct:   889 DLEKTCKDLKHQLQ 902

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ASPGD|ASPL0000042966 AN2480 [Emericella nidulans (taxid:162425)]

 Score = 174 (66.3 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 77/323 (23%), Positives = 160/323 (49%)

Query:   112 TRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER-ELPLVQEVDAK 170
             T T +T   + +P AE  + L    +ELE KI+ L  ++    +  ER +  L  E D K
Sbjct:   549 TATPETAPAVSQP-AESSSAL----AELEKKIADLEQQLREKEQAIERLDSRLKGEEDLK 603

Query:   171 --VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 228
               ++ LR  + ++ +  V  +  + +L  +  AL+   S+ E ++      NA   +   
Sbjct:   604 EEIESLRDDLLNIGQEHVEAKDKIKELVAEKAALEGTISKLEAEITDLRSNNAAKSADSE 663

Query:   229 QSPEKLQRTLEEKK----SIREEARDAEKLAMQSFQEKTTTLEVYQKT---LKKMSKQSA 281
             ++   L+   E  K    +I  E   A++LA   F++ T   E  QK    LKK+  +SA
Sbjct:   664 KAHNDLKDEYESLKVKFTTIETELSAAQQLATTRFKDITDLRESIQKIQPELKKLRGESA 723

Query:   282 QMQAILEQVNSAKSIEKDYKSLKARLNDDVVLD-KSLEAKLIERQGKVXXXXXXXXXXXX 340
             ++++  +++ S K+ E   ++L+++ +DD+  + K+L+  + +R+ +V            
Sbjct:   724 ELRSTKDELKS-KTAE--LRTLESK-HDDLQAEVKALKTSISDRETEVKTLNQKIKQELD 779

Query:   341 XRNLKSEDATRAFENVKLEMESKRQD-LEARQKKVEAVVTEVDAI-TSKTKFVK-ESGAA 397
              R LK+E++    ++    +ES++Q+ +E +QK +  +    D + T++ +  + E   +
Sbjct:   780 SR-LKAEESLTVAQSDLRYIESRKQEAIEGKQKVLSELSNVQDELKTARARLREYEQQTS 838

Query:   398 KL-QELASKAEEIVEKFQQYTNS 419
             +L +EL    +EI  K  Q++++
Sbjct:   839 QLNKELEGLRDEIQLKTAQHSSA 861

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

ZFIN|ZDB-GENE-010328-15 hip1 "huntingtin interacting protein 1" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
 Identities = 64/282 (22%), Positives = 133/282 (47%)

Query:    98 PMNFTLKDLIRPD-ATRTEDTKMNLLRPIAEDLT--RLDEQR--SELEDKISQLNAEIAA 152
             P NF  ++ +R D   R  +     L+ + E+L   RL+  R    L  ++++L AE+A 
Sbjct:   360 PFNFNSQNGMRKDDKDRLIEQLTAELQALKEELESFRLESGRLCQALRGRVNELEAELAE 419

Query:   153 YNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 212
                ++++ L   + + A++ +LR+  +D  K Q SL    ++++ K  A ++++++ +  
Sbjct:   420 QTHLKQQALGESEFLRAELDDLRRVKEDTEKEQRSL----SEIERKAQANEQRYTKLKEK 475

Query:   213 LVQSVQQNADLRSKIVQSPEKL---QRTLEEKKSIREEARDAEKLAMQSF-QEKTTTLEV 268
               + VQ +ADL  K  +   ++   +   +E +++++E +D  K+A  S  Q++   LE 
Sbjct:   476 YTELVQSHADLLRKNAEVTRQMTVARAAQDEVENVKKEMQDRLKVAQDSASQQEKAQLEQ 535

Query:   269 YQKTLKKMSKQSAQMQAILEQVNSAK-SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGK 327
              Q    ++     +++ +   V S++ S E+    L A + +   L +++  K +E  G 
Sbjct:   536 LQALQAELMSSRTELETLKSTVTSSQQSNEQLGTQLSALVAEKAGLVETVSRKEVELSGL 595

Query:   328 VXXXXXXXXXXXXXRNLKSEDATRAFENVKLEMESKRQDLEA 369
                           R      A  A +N   E ES+ Q LE+
Sbjct:   596 GAELERLQSSLTNERE-SGVKAAEALQNQLNEKESREQALES 636

GO:0003779 "actin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

UNIPROTKB|F1NM49 MYH15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 78/331 (23%), Positives = 152/331 (45%)

Query:   101 FTLKDLIRPDATRTE--DTKMNLLRPIAEDLTRLDEQRSELEDK-IS----------QLN 147
             F +K L++   T  E  + K   L+ + E L + + +R ELE+K +S          QL 
Sbjct:   834 FKIKPLLKSAETEKEMANMKEEFLK-LKEALEKSEARRKELEEKQVSLVQEKNDLLLQLQ 892

Query:   148 AEIAAYNEVRERELPLVQ---EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 204
             AE     +  ER   L++   +++AKVKEL + ++D  +    L +   KL+++   L +
Sbjct:   893 AEQDTLADAEERCDLLIKSKIQLEAKVKELTERVEDEEEMNSELTSKKRKLEDECSELKK 952

Query:   205 KFSQTEFDLVQ-SVQQNA------DLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQ 257
                  E  L +   +++A      +L  ++    E + +  +EKKS+ +EA       +Q
Sbjct:   953 DIDDLEITLAKVEKEKHATENKVKNLTEEMATLDENISKLTKEKKSL-QEAHQQVLDDLQ 1011

Query:   258 SFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSL 317
             + ++K  TL    K   K+ +Q   ++  LEQ    K +  D +  K +L  D+ L +  
Sbjct:  1012 AEEDKVNTLS---KAKVKLEQQVDDLEGSLEQ---EKKVRMDLERAKRKLEGDLKLTQES 1065

Query:   318 EAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAV 377
                L   + ++              N K ED     + + ++++ K ++L+AR +++E  
Sbjct:  1066 VMDLENDKLQMEEKLKKKEFEMSQLNSKIEDE----QAIVMQLQKKIKELQARIEELEEE 1121

Query:   378 VTEVDAITSKTKFVKESGAAKLQELASKAEE 408
             +    A  +K +  +   A +L+EL+ + EE
Sbjct:  1122 LEAERAARAKVEKQRSDLARELEELSERLEE 1152

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|F1NKL9 MYH15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 78/331 (23%), Positives = 152/331 (45%)

Query:   101 FTLKDLIRPDATRTE--DTKMNLLRPIAEDLTRLDEQRSELEDK-IS----------QLN 147
             F +K L++   T  E  + K   L+ + E L + + +R ELE+K +S          QL 
Sbjct:   841 FKIKPLLKSAETEKEMANMKEEFLK-LKEALEKSEARRKELEEKQVSLVQEKNDLLLQLQ 899

Query:   148 AEIAAYNEVRERELPLVQ---EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 204
             AE     +  ER   L++   +++AKVKEL + ++D  +    L +   KL+++   L +
Sbjct:   900 AEQDTLADAEERCDLLIKSKIQLEAKVKELTERVEDEEEMNSELTSKKRKLEDECSELKK 959

Query:   205 KFSQTEFDLVQ-SVQQNA------DLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQ 257
                  E  L +   +++A      +L  ++    E + +  +EKKS+ +EA       +Q
Sbjct:   960 DIDDLEITLAKVEKEKHATENKVKNLTEEMATLDENISKLTKEKKSL-QEAHQQVLDDLQ 1018

Query:   258 SFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSL 317
             + ++K  TL    K   K+ +Q   ++  LEQ    K +  D +  K +L  D+ L +  
Sbjct:  1019 AEEDKVNTLS---KAKVKLEQQVDDLEGSLEQ---EKKVRMDLERAKRKLEGDLKLTQES 1072

Query:   318 EAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAV 377
                L   + ++              N K ED     + + ++++ K ++L+AR +++E  
Sbjct:  1073 VMDLENDKLQMEEKLKKKEFEMSQLNSKIEDE----QAIVMQLQKKIKELQARIEELEEE 1128

Query:   378 VTEVDAITSKTKFVKESGAAKLQELASKAEE 408
             +    A  +K +  +   A +L+EL+ + EE
Sbjct:  1129 LEAERAARAKVEKQRSDLARELEELSERLEE 1159

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00070302 hypothetical protein (442 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	432
pfam03800	144	pfam03800, Nuf2, Nuf2 family	3e-17
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-06
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	7e-05
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	1e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	7e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	9e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PLN02939	977	PLN02939, PLN02939, transferase, transferring glyc	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam04156	186	pfam04156, IncA, IncA protein	0.002
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.003
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.004

>gnl|CDD|217737 pfam03800, Nuf2, Nuf2 family

 Score = 77.6 bits (192), Expect = 3e-17
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 4/113 (3%)

Query: 3   KFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQL 61
           K  +PRL   EIV  L E  +   TE DL  P P+ V  LY R+L +F+ +  E      
Sbjct: 4   KDSFPRLPVDEIVECLRELGLPA-TEEDLLKPTPEVVQMLYERILELFMGITRE-TLDGA 61

Query: 62  DFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRT 114
             AA E +E P+L+  ++ +++LY  ++  +       +F+L DL++P   RT
Sbjct: 62  MRAAAEGIEYPELYEETLPLLRLYRYMQRFLEVCGVN-DFSLSDLLKPTPKRT 113

Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Arabidopsis thaliana T7P1.14. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region. Length = 144

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.0 bits (151), Expect = 4e-10
 Identities = 55/288 (19%), Positives = 125/288 (43%), Gaps = 12/288 (4%)

Query: 138 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE 197
           EL +++ +L  E+    E  E     +QE++ K++ELR  + +L +    L+  L  L  
Sbjct: 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295

Query: 198 KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQ 257
           +   L+++       L    +Q  +L +++ +   KL    EE   + E+  + ++  ++
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE-LE 354

Query: 258 SFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSL 317
           S + +   LE   + L+  S+     + +    +    +E    SL   +         L
Sbjct: 355 SLEAELEELEAELEELE--SRLEELEEQLETLRSKVAQLELQIASLNNEIE-------RL 405

Query: 318 EAKLIERQGKVEQLDELQQQLEKER-NLKSEDATRAFENVKLEMESKRQDLEARQKKVEA 376
           EA+L   + + E+L +  ++L K+    + ++     E ++ E+E  +++LE  ++ +E 
Sbjct: 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE 465

Query: 377 VVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 424
           +  E++         +   A     L S  E + E  + ++  +  LL
Sbjct: 466 LREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEGVKALL 512

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 53/291 (18%), Positives = 123/291 (42%), Gaps = 36/291 (12%)

Query: 131  RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 190
            +L+E+ ++L  ++++L AEI    E  E     + E +A+++EL   I+ L +   +LR 
Sbjct: 744  QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803

Query: 191  TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ--------------------- 229
             L++L+ +   L+E+ +     L    ++ A    ++                       
Sbjct: 804  ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863

Query: 230  ---SPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAI 286
                 E+L+  LE   + R    +A  L     +E +  L   +    ++ ++  +++  
Sbjct: 864  LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923

Query: 287  LEQVNSAKS-IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLK 345
            L Q+      +E    +L+ RL+++  L  +LE          +  +E +++L++  N  
Sbjct: 924  LAQLELRLEGLEVRIDNLQERLSEEYSL--TLEEAEALENKIEDDEEEARRRLKRLENKI 981

Query: 346  SE------DATRAFENVK---LEMESKRQDLEARQKKVEAVVTEVDAITSK 387
             E       A   +E +K     + ++++DL   ++ +E  + E+D    +
Sbjct: 982  KELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 51/261 (19%), Positives = 122/261 (46%), Gaps = 12/261 (4%)

Query: 125 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 184
           + E+L  L E+  E E +I +L +E+    E  E     + E+  +++EL   I  L + 
Sbjct: 251 LEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310

Query: 185 QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 244
              L   L +L+E+   L EK    +    + +++   L  ++ Q   +L+   EE +  
Sbjct: 311 LEELENELEELEERLEELKEKIEALK----EELEERETLLEELEQLLAELEEAKEELEEK 366

Query: 245 REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAK-SIEKDYKSL 303
                +  +   ++ +E+   LE       ++++   +++ +  ++ S +  +E+  + L
Sbjct: 367 LSALLEELEELFEALREELAELE------AELAEIRNELEELKREIESLEERLERLSERL 420

Query: 304 KARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESK 363
           +    +   L+  LE    E +   E+L+EL++QLE+ R+ + ++  R    ++ E++  
Sbjct: 421 EDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD-RLKELERELAELQEELQRL 479

Query: 364 RQDLEARQKKVEAVVTEVDAI 384
            ++L + + +++ +  E  A 
Sbjct: 480 EKELSSLEARLDRLEAEQRAS 500

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 58/312 (18%), Positives = 140/312 (44%), Gaps = 22/312 (7%)

Query: 105 DLIRPDATRT---EDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVREREL 161
           DL+RP    T     T  ++L    E +  L+E+  ELE+KI++L   +A   +  E   
Sbjct: 653 DLVRPGGVITGGSAKTNSSILERRRE-IEELEEKIEELEEKIAELEKALAELRKELE--- 708

Query: 162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 221
               E++ ++++LR+ +++L++   +LR  L +L+ +   L+E+ +Q   +L +   +  
Sbjct: 709 ----ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764

Query: 222 DLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSA 281
           +L  ++ ++ E+L     E + +  +    ++  +++ +E    L      L        
Sbjct: 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKE-ELKALREALDELRAELTLLN------- 816

Query: 282 QMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKE 341
             +         +S+E+   + + RL D     + L   +     ++E+L+EL ++LE E
Sbjct: 817 --EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874

Query: 342 RNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQE 401
                 +     E +   + S+ ++L    +++E+  +E+     + +        +L+ 
Sbjct: 875 LEALLNERASLEEALA-LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933

Query: 402 LASKAEEIVEKF 413
           L  + + + E+ 
Sbjct: 934 LEVRIDNLQERL 945

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 51/262 (19%), Positives = 125/262 (47%), Gaps = 15/262 (5%)

Query: 125  IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 184
            + E L  L+E+   LE+ +++L  EI    E R       Q +  +++EL + +++  + 
Sbjct: 756  LQERLEELEEELESLEEALAKLKEEIEELEEKR-------QALQEELEELEEELEEAERR 808

Query: 185  QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 244
              +L   L  L+++   L+++  + E ++ +  ++  +L  ++    E+L++ LEE K  
Sbjct: 809  LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEEL----EELEKELEELKEE 864

Query: 245  REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQM-QAILEQVNSAKSIEKDYKSL 303
             EE    ++      +E     E  ++ L+++  + A++ + I +     + +E   + L
Sbjct: 865  LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERL 924

Query: 304  KARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER--NLKSEDATRAFENVKLEME 361
            +  L +     +    +         +++ L++++E     NL++ +     E    E++
Sbjct: 925  EVELPELEEELEEEY-EDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELK 983

Query: 362  SKRQDLEARQKKVEAVVTEVDA 383
            S+R+DLE  ++K+  V+ E+D 
Sbjct: 984  SQREDLEEAKEKLLEVIEELDK 1005

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 61/318 (19%), Positives = 144/318 (45%), Gaps = 25/318 (7%)

Query: 112 TRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLV-QEVDAK 170
            R E+ +  L R   E+L RL++   ELE ++ +L          R+ E     QE+ A+
Sbjct: 172 ERKEEAERKLER-TEENLERLEDLLEELEKQLEKLE---------RQAEKAERYQELKAE 221

Query: 171 VKELRQT-----IQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225
           ++EL        +++L K    L   L++L+E+   L E+  + E ++ +   +  +LR 
Sbjct: 222 LRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELRE 281

Query: 226 KIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQA 285
           ++ +  E+L    EE + +  E     +   +   E     E  ++  +K+     +++ 
Sbjct: 282 ELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEE 341

Query: 286 ILEQVNSAKSIEKDYKS--------LKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ 337
               +   + +  + +         L A L +   L ++L  +L E + ++ ++    ++
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401

Query: 338 LEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAA 397
           L++E     E   R  E ++ +++ + ++LEA  ++++  + E++    + +   E    
Sbjct: 402 LKREIESLEERLERLSERLE-DLKEELKELEAELEELQTELEELNEELEELEEQLEELRD 460

Query: 398 KLQELASKAEEIVEKFQQ 415
           +L+EL  +  E+ E+ Q+
Sbjct: 461 RLKELERELAELQEELQR 478

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 61/312 (19%), Positives = 154/312 (49%), Gaps = 8/312 (2%)

Query: 105 DLIRPDATRTEDTKMNLLRPIAE-DLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPL 163
           DL+ P  + T  ++        + +L  L+E+ +ELE ++ +L  E+ +          L
Sbjct: 644 DLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDL 703

Query: 164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 223
           ++E+  +++EL + +++L +   +L   L +L+ +   L+E+  + E +L +  ++  +L
Sbjct: 704 LEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL 763

Query: 224 RSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQM 283
             ++    E L + L+E+    EE R A +  ++  +E+    E     L++  +   Q 
Sbjct: 764 EEELESLEEALAK-LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQR 822

Query: 284 QAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERN 343
           +  LEQ    + +E++ + L+ +L++     + LE +L E + ++E+L+  +++LE E  
Sbjct: 823 RERLEQ--EIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDE-- 878

Query: 344 LKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELA 403
              ++     E ++ E+     +L   ++++E +   ++ + +K + ++       +EL 
Sbjct: 879 --LKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936

Query: 404 SKAEEIVEKFQQ 415
            + E+ +E   +
Sbjct: 937 EEYEDTLETELE 948

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 64/320 (20%), Positives = 126/320 (39%), Gaps = 31/320 (9%)

Query: 125 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 184
           +      L+++  EL D++ +      A+NE  E       +++ + +ELR+   +L   
Sbjct: 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE 371

Query: 185 QVSLRTTLNKLKEKTGALDE-------KFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRT 237
               R  +   +E+   L+E       +F     DL  +     +LR +  +  E+    
Sbjct: 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431

Query: 238 LEEKKSIREEARDAEKLA-----------------MQSFQEKTTTLEVYQKTLKKMSKQS 280
               ++ RE   +AE L                  +++ +E    +E  +  L+ + ++ 
Sbjct: 432 EATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEV 491

Query: 281 AQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEK 340
            +++  LE+       E   + L+ R  D   L       + E++ + E+L E   +LE 
Sbjct: 492 EEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEA 551

Query: 341 ERNLKSEDATRAFENVK------LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES 394
           E   K E A  A E  +       E+ SK  +L+ R + +E + T + AI      + E 
Sbjct: 552 EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEI-ER 610

Query: 395 GAAKLQELASKAEEIVEKFQ 414
              K + LA   +E  E+  
Sbjct: 611 LREKREALAELNDERRERLA 630

Length = 880

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 166 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225
           ++  ++  L + I++    +  L   L  L+ +  +L+ +  +T  DL +  +Q ADL +
Sbjct: 42  QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101

Query: 226 KIVQSPEKL---QRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ 282
           ++     +    +R L E+ +  + +      A+    E              ++   A+
Sbjct: 102 RLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAE 161

Query: 283 MQAILEQVNSA-----KSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLD---EL 334
               L+            I  +   L   L++       L   L ER+  + QL+     
Sbjct: 162 RIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSA 221

Query: 335 QQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEA 376
            Q+  +E             + +      R+   A +     
Sbjct: 222 DQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAAR 263

Length = 420

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 49/291 (16%), Positives = 133/291 (45%), Gaps = 18/291 (6%)

Query: 125 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 184
            AE    L  +  ELE  +           E+R+      +E++ ++  L + +++L + 
Sbjct: 211 KAERYQELKAELRELELALLLAK-----LKELRKEL----EELEEELSRLEEELEELQEE 261

Query: 185 QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 244
                  + +LK +   L E+  + + +L++  ++  +L  +I    E+L+    E + +
Sbjct: 262 LEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEEL 321

Query: 245 REEARDAEKLA---MQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYK 301
            E   + ++      +  +E+ T LE  ++ L ++ +   +++  L  +   + +E+ ++
Sbjct: 322 EERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSAL--LEELEELFE 379

Query: 302 SLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEME 361
           +L+  L +   L+  L     E +    +++ L+++LE+    + ED     + ++ E+E
Sbjct: 380 ALREELAE---LEAELAEIRNELEELKREIESLEERLERLSE-RLEDLKEELKELEAELE 435

Query: 362 SKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEK 412
             + +LE   +++E +  +++ +  + K ++   A   +EL    +E+   
Sbjct: 436 ELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSL 486

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 60/316 (18%), Positives = 130/316 (41%), Gaps = 31/316 (9%)

Query: 130 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLR 189
                +   L +++  L  E+++      R    + E+  ++ +  + I ++ K    L 
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 190 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEAR 249
               KLKE+   L+E  S  E ++     +  +L ++I    E+L+  L +   + E   
Sbjct: 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI----EELEEDLHK---LEEALN 782

Query: 250 DAE-KLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKD--------- 299
           D E +L+     E    L   ++ + ++  +  +++  L ++   K   +          
Sbjct: 783 DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842

Query: 300 ------YKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER-NLKSE--DAT 350
                  KS++  + +     + LE +L E +  +  L+     L+KER  L+++  +  
Sbjct: 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902

Query: 351 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIV 410
           R  E ++ ++E KR+ L   + K+EA+  E+  I       +E    +L       E++ 
Sbjct: 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-----EDVQ 957

Query: 411 EKFQQYTNSIGTLLPV 426
            + Q+    I  L PV
Sbjct: 958 AELQRVEEEIRALEPV 973

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 37/180 (20%), Positives = 81/180 (45%), Gaps = 6/180 (3%)

Query: 126 AEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQ 185
            E+L   +    ELE  +++L        E+ E+   L++E++   + LR+ + +L    
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKE---ELEEKLSALLEELEELFEALREELAELEAEL 392

Query: 186 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS---PEKLQRTLEEKK 242
             +R  L +LK +  +L+E+  +    L    ++  +L +++ +     E+L   LEE +
Sbjct: 393 AEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELE 452

Query: 243 SIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKS 302
              EE RD  K   +   E    L+  +K L  +  +  +++A        +++ +  +S
Sbjct: 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES 512

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 60/271 (22%), Positives = 121/271 (44%), Gaps = 11/271 (4%)

Query: 155 EVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ--TEFD 212
           E          E+  +++EL + +++L +  + L      LKE+     EK      E +
Sbjct: 487 EEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELE 546

Query: 213 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKT 272
            ++   Q   L+ ++ Q  ++LQ   E  + +R      E+L  +  +E+   L+   K 
Sbjct: 547 ELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEEL--EELRERLKELKKKLKE 604

Query: 273 LKKMSKQSA---QMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVE 329
           L++   Q     Q   + E  N  +  E++ +S   +LN    L++ L+A L E + KVE
Sbjct: 605 LEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVE 664

Query: 330 QLDELQQQLE--KERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK 387
           +L+   ++     E   + E+     E ++ E+E  R++LE   KK+  +   ++ + S+
Sbjct: 665 ELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESR 724

Query: 388 TKFVKES--GAAKLQELASKAEEIVEKFQQY 416
              ++E      KL++     EE+ EK  + 
Sbjct: 725 KAELEELKKELEKLEKALELLEELREKLGKA 755

Length = 908

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 34/208 (16%), Positives = 84/208 (40%), Gaps = 12/208 (5%)

Query: 212 DLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQK 271
           +L  +  +     ++   +  +LQ+  +E++++R+E   A +   ++ QE     +  Q 
Sbjct: 89  ELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQD 148

Query: 272 TLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQL 331
              ++   + Q + +  Q  S ++ +K  ++   +L    VLD  L +  IE++ +    
Sbjct: 149 LQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQL-KSQVLDLKLRSAQIEQEAQ---- 203

Query: 332 DELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 391
             L  +    +    E A RA    +     +++D +  QK  +                
Sbjct: 204 -NLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRE------ 256

Query: 392 KESGAAKLQELASKAEEIVEKFQQYTNS 419
           +E    +L+   ++ E+ V + + Y  +
Sbjct: 257 RERQLQRLETAQARLEQEVAQLEAYYQA 284

Length = 499

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 54/278 (19%), Positives = 125/278 (44%), Gaps = 11/278 (3%)

Query: 138 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE 197
           ELE K  QL  EI    E R+       E+  +  EL +   +LN     LR    +L+E
Sbjct: 10  ELELKRKQLKEEIEELKEKRD-------ELRKEASELAEKRDELNAKVRELREKAQELRE 62

Query: 198 KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQ 257
           +   ++E+  + +    +   +  +LR +  +  EK        +SI+   R+ E+L  +
Sbjct: 63  ERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKK 122

Query: 258 SFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSL 317
             Q    T E  ++ ++K+ +   +++   + +   + +++    +         + + +
Sbjct: 123 -QQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKI 181

Query: 318 EAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAV 377
           +    E Q   E++ +L ++ ++ R  ++++    F  +  +++   ++    Q ++  +
Sbjct: 182 QELANEAQEYHEEMIKLFEEADELRK-EADELHEEFVELSKKIDELHEEFRNLQNELREL 240

Query: 378 VTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQ 415
             ++ A+ +K K  K     K +EL  +AEEI EKF++
Sbjct: 241 EKKIKALRAKEKAAKR--REKREELKERAEEIYEKFKR 276

Length = 294

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 51/266 (19%), Positives = 122/266 (45%), Gaps = 8/266 (3%)

Query: 131 RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 190
            L E   E++ +I +L   I     + E     ++E + +++E+ + I +++     LR 
Sbjct: 166 NLGEVIKEIKRRIERLEKFIKRTENIEEL----IKEKEKELEEVLREINEISSELPELRE 221

Query: 191 TLNKL---KEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREE 247
            L KL    ++   L E+  + E +L         L  KI +  E+++   +E + + E+
Sbjct: 222 ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281

Query: 248 ARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARL 307
            ++ ++L  +  +E     E Y++ L ++ +   ++  + E++N  +   K+ +  + RL
Sbjct: 282 VKELKELK-EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340

Query: 308 NDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDL 367
            +     K LE +L E + + E  +E + + E+   LK        E ++ E+E   +  
Sbjct: 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAK 400

Query: 368 EARQKKVEAVVTEVDAITSKTKFVKE 393
           E  ++++  +   +  +  + K +K+
Sbjct: 401 EEIEEEISKITARIGELKKEIKELKK 426

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 64/308 (20%), Positives = 134/308 (43%), Gaps = 21/308 (6%)

Query: 107 IRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQE 166
           +R     TE  +  L    AE++  L E+  ELE++   L AE    +   E      +E
Sbjct: 263 LRETIAETEREREEL----AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREE 318

Query: 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 226
           ++ + +ELR  +++      +       L+E    L+E+  +         ++ A+L S+
Sbjct: 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR-------EEAAELESE 371

Query: 227 IVQSPEKLQRTLEEKKSIREEARDAEKL---AMQSFQEKTTTLEVYQKTLKKMSKQSAQM 283
           + ++ E ++   EE + + EE  +  +    A          LE  ++   ++ ++ A++
Sbjct: 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431

Query: 284 QAILEQVNSAKSIEKDYKSLKARLNDDV---VLDKSLEAKLIERQGKVEQLDELQQQLEK 340
           +A L    + + +E+    L+A    +    V        + E + +VE+L+   + LE+
Sbjct: 432 EATLR--TARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEE 489

Query: 341 ERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQ 400
           E     E   RA + V+   E + + LE R++ +E ++ E      + +   E    +  
Sbjct: 490 EVEEVEERLERAEDLVEA--EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAA 547

Query: 401 ELASKAEE 408
           EL ++AEE
Sbjct: 548 ELEAEAEE 555

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 69/316 (21%), Positives = 139/316 (43%), Gaps = 33/316 (10%)

Query: 114 TEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV--RERELPLVQEVDAKV 171
           TE+ +  LL     +L R++++  E+E+K  +L  E+    +V  +E EL  ++E+  ++
Sbjct: 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQL 505

Query: 172 KELRQTIQDLNKHQVSLRTT-LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS 230
           KEL + ++  N  ++  +     KLKEK   L  +    + +L    ++  +L+ K+ + 
Sbjct: 506 KELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAEL 561

Query: 231 PEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQV 290
            +KL    EE   + +E    E+L  +S +E    L+              +++    + 
Sbjct: 562 EKKLDELEEELAELLKE---LEELGFESVEELEERLK--------------ELEPFYNEY 604

Query: 291 NSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDAT 350
              K  EK+ +  +  L     L++ L+    E     ++L+EL+++LE+     SE+  
Sbjct: 605 LELKDAEKELEREEKELKK---LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY 661

Query: 351 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELA------S 404
                  LE+  +   L A  +++E    E+     K K   E      +EL        
Sbjct: 662 EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721

Query: 405 KAEEIVEKFQQYTNSI 420
           + EE+ EK ++Y   +
Sbjct: 722 RVEELREKVKKYKALL 737

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 21/211 (9%)

Query: 113 RTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVK 172
           R+   K   L    E L +L+ +  +L  +I +L  EI    + R++      E+  +++
Sbjct: 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELE 367

Query: 173 ELRQTIQDLNK-------HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225
           +LR  +++++K            R  L KLK +   L  +  + + +L +  ++ ADL +
Sbjct: 368 DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA 427

Query: 226 KIVQSPEKLQRTLEEKKSIREEARDAEKLAMQ----------SFQEKTTTLEVYQKTLKK 275
            I     K+    EEK+    E +  E    Q             +     +  +K L K
Sbjct: 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487

Query: 276 MSKQ----SAQMQAILEQVNSAKSIEKDYKS 302
           + ++     AQ +A  E+V   +++E+  K+
Sbjct: 488 LQRELAEAEAQARASEERVRGGRAVEEVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 38/263 (14%)

Query: 176 QTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 235
           Q ++DL K    + T    L+ K   L+ + S+T+  +  + Q+        V+  E+  
Sbjct: 153 QALEDLEK----ILTEKEALQGKINILEMRLSETDARIKLAAQEKIH-----VEILEEQL 203

Query: 236 RTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKK-MSKQSAQMQAILEQVNSAK 294
             L  +  IR      E L + S  ++   L+     LK  +    A++  + E      
Sbjct: 204 EKLRNELLIRGAT---EGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVF 260

Query: 295 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ--LEKERNLKS--EDAT 350
            +EK+   L A L +       LE+K I  Q  V +L  LQ     EK  NL+   + AT
Sbjct: 261 KLEKERSLLDASLRE-------LESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRAT 313

Query: 351 RAFENVKLEMESKRQDLEARQKKVEAVVTE----------VDAITSKTKFVKESGAAKLQ 400
              E   L ++ + QDL  +  K+EA + E          V+ +  K K ++E   A   
Sbjct: 314 NQVEKAALVLD-QNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDH 372

Query: 401 ELASKA---EEIVEKFQQYTNSI 420
           E+ S     +E +++FQ   + +
Sbjct: 373 EIHSYIQLYQESIKEFQDTLSKL 395

Length = 977

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 57/286 (19%), Positives = 120/286 (41%), Gaps = 35/286 (12%)

Query: 122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 181
              I   L  L+E+  +L ++IS+L   +    ++ E       E++ K+K+L +  Q  
Sbjct: 239 KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLE-------ELNKKIKDLGEEEQ-- 289

Query: 182 NKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE- 240
                       ++KEK G L+ + +  E  + +  ++  D   ++ +   ++ + L E 
Sbjct: 290 -----------LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338

Query: 241 ---KKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIE 297
              ++ I EE +  +KL  + + E    LE  +  L+++ K+ A      E  +  K   
Sbjct: 339 EELEREIEEERKRRDKL-TEEYAELKEELEDLRAELEEVDKEFA------ETRDELKDYR 391

Query: 298 KDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVK 357
           +  + LK  +N+   L + L+    E Q   E+L +L   +       +E      E+  
Sbjct: 392 EKLEKLKREINE---LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK-EDKA 447

Query: 358 LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELA 403
           LE++ +   LE     +     E+  +  +   V++  +   +ELA
Sbjct: 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 27/115 (23%), Positives = 59/115 (51%)

Query: 175 RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 234
            Q +++L      L+  L++L+E+   L+E+ ++ E +L    +    LR  +    E+L
Sbjct: 71  PQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERL 130

Query: 235 QRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQ 289
           +   E  K + +E R+  +   +  +E    LE  Q+ L+++ +   ++Q++LEQ
Sbjct: 131 ESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLLEQ 185

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 27/269 (10%)

Query: 123 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN 182
            P  E L    EQ   LE ++  L+ E+ A  E    E    +E       LRQ ++ L 
Sbjct: 245 APEIEKLQEDFEQLLSLELRLQHLHGELVADEERLAEEQ---EERQEAKNRLRQQLRTLE 301

Query: 183 KHQVSLRTTLNK-LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 241
                 R  LN+ L      L     ++E +L++  Q+ A   + I    E+LQ  L++ 
Sbjct: 302 DQLKEARDELNQELSAANAKLAAD--RSELELLED-QKGAFEDADI----EQLQADLDQL 354

Query: 242 KSIREEARDAEKL------AMQSFQEKTTTLE--VYQKTLKKMSKQSAQMQAILEQVNSA 293
            SIR E  + E          Q  Q K   L+  + ++  + + K + ++ AI E+ +  
Sbjct: 355 PSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQ 414

Query: 294 KS-IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQL-----EKERNLKSE 347
           K+ IE+D ++L+++L     L+        E      +L  L+Q+L       E   + E
Sbjct: 415 KAAIEEDLQALESQLRQQ--LEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLE 472

Query: 348 DATRAFENVKLEMESKRQDLEARQKKVEA 376
               A E  + E E    ++E  Q ++  
Sbjct: 473 INDEALEKAQEEQEQAEANVEQLQSELRQ 501

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 50/305 (16%), Positives = 126/305 (41%), Gaps = 20/305 (6%)

Query: 103 LKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIA--------AYN 154
           L+ L  PD    E      L+   E L     ++ + E+++ Q NAE+         A  
Sbjct: 590 LQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEART 649

Query: 155 EVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK---FSQTEF 211
            +++  L L +  + +     +    + + +    T L +L  +   L E+   F +   
Sbjct: 650 ALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALK 709

Query: 212 D--LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVY 269
           D       ++ A  +    +   +L +     ++ R +A+   K   + +  +  +L+V 
Sbjct: 710 DDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVD 769

Query: 270 QKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVE 329
             T+K++ +Q  +++  +E++   +   ++Y++    + +  +   SL  +      ++ 
Sbjct: 770 PNTVKELKRQIEELETTIERIAVRRPEVREYRAF---MQETWLHRDSLREERPNLAIQLR 826

Query: 330 QLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTK 389
           +L+   ++L++E     +D        KLE E  R+ LE +  +++ ++  +     +  
Sbjct: 827 ELESSAEELQQELTRLIKDTKL--RRKKLEQE--RKALEKQLDQLDELLRGLRDEMRQLA 882

Query: 390 FVKES 394
            +KE 
Sbjct: 883 ELKEP 887

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	432
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	100.0
PF03800	146	Nuf2: Nuf2 family; InterPro: IPR005549 Members of	100.0
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	99.29
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.8
PRK03918	880	chromosome segregation protein; Provisional	98.63
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.6
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.59
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.57
COG5185	622	HEC1 Protein involved in chromosome segregation, i	98.56
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.54
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.54
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.5
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.44
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.42
PRK02224	880	chromosome segregation protein; Provisional	98.42
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.41
PRK02224	880	chromosome segregation protein; Provisional	98.4
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.39
PRK03918	880	chromosome segregation protein; Provisional	98.38
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.34
PRK01156	895	chromosome segregation protein; Provisional	98.33
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.3
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.24
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.22
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.2
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.16
PHA02562	562	46 endonuclease subunit; Provisional	98.15
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	98.12
PRK04778	569	septation ring formation regulator EzrA; Provision	98.11
PRK01156	895	chromosome segregation protein; Provisional	98.06
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.05
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.02
PRK04863	1486	mukB cell division protein MukB; Provisional	98.01
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.98
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.98
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.91
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.81
PRK11637	428	AmiB activator; Provisional	97.77
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.75
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.73
PHA02562	562	46 endonuclease subunit; Provisional	97.57
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.52
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.52
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.52
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.49
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.46
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.4
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.37
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.34
COG2433	652	Uncharacterized conserved protein [Function unknow	97.22
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.19
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.12
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.04
PRK04778	569	septation ring formation regulator EzrA; Provision	97.03
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.02
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	97.0
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.99
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.98
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.84
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.79
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.69
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.68
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.65
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.56
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.53
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.51
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.49
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.47
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.45
KOG1962	216	consensus B-cell receptor-associated protein and r	96.32
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.31
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.17
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	96.16
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.12
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.09
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	96.01
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.98
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.95
KOG0971	1243	consensus Microtubule-associated protein dynactin	95.91
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	95.87
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.87
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.81
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	95.73
KOG1937	521	consensus Uncharacterized conserved protein [Funct	95.68
PRK09039	343	hypothetical protein; Validated	95.67
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	95.5
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.49
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.47
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	95.45
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.44
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.42
PRK04863	1486	mukB cell division protein MukB; Provisional	95.36
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	95.29
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.26
PRK09039	343	hypothetical protein; Validated	95.26
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	95.22
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	95.21
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	95.2
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.2
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.05
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.03
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.01
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.98
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.95
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	94.9
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	94.9
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	94.78
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	94.71
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.34
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	94.29
PF13514	1111	AAA_27: AAA domain	94.28
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	94.26
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	94.26
COG4026	290	Uncharacterized protein containing TOPRIM domain,	94.26
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.18
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.1
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.98
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.54
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.41
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.35
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.13
PRK10869	553	recombination and repair protein; Provisional	93.12
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.04
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	92.87
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	92.72
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	92.59
PF14662	193	CCDC155: Coiled-coil region of CCDC155	92.52
KOG1003	205	consensus Actin filament-coating protein tropomyos	92.47
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.43
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	92.42
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	92.37
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	92.28
KOG1003	205	consensus Actin filament-coating protein tropomyos	92.26
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.25
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	92.12
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	92.03
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	91.93
PRK15422	79	septal ring assembly protein ZapB; Provisional	91.86
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.81
KOG0018	1141	consensus Structural maintenance of chromosome pro	91.73
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	91.62
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	91.48
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	91.48
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	91.31
PRK10884	206	SH3 domain-containing protein; Provisional	91.02
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	90.99
PRK10884	206	SH3 domain-containing protein; Provisional	90.99
COG4372	499	Uncharacterized protein conserved in bacteria with	90.92
PLN02939	977	transferase, transferring glycosyl groups	90.79
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.77
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	90.72
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.13
KOG4302	660	consensus Microtubule-associated protein essential	90.11
PF13874	141	Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B	90.11
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	89.97
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	89.67
KOG0979	1072	consensus Structural maintenance of chromosome pro	89.6
PRK10869	553	recombination and repair protein; Provisional	89.5
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	89.12
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	89.11
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	88.77
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	88.76
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	88.75
PF03800	146	Nuf2: Nuf2 family; InterPro: IPR005549 Members of	88.63
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	88.58
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	88.57
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.36
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.31
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	88.24
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	88.04
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	87.42
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	87.24
PF15294	278	Leu_zip: Leucine zipper	87.16
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	87.07
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	86.99
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	86.64
KOG1962	216	consensus B-cell receptor-associated protein and r	86.26
PRK15422	79	septal ring assembly protein ZapB; Provisional	86.24
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.08
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	85.86
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	85.84
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	85.75
PF11172	201	DUF2959: Protein of unknown function (DUF2959); In	85.72
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	85.56
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	84.94
KOG1937	521	consensus Uncharacterized conserved protein [Funct	84.77
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	84.58
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	84.54
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	84.49
COG4026	290	Uncharacterized protein containing TOPRIM domain,	84.44
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	84.43
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	83.95
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	83.63
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	83.5
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	83.36
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	83.16
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	82.93
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	82.69
COG4372	499	Uncharacterized protein conserved in bacteria with	82.64
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	82.62
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	82.61
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	82.59
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	82.46
KOG0963	629	consensus Transcription factor/CCAAT displacement	82.44
PF14992	280	TMCO5: TMCO5 family	82.36
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	81.94
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	81.69
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	81.67
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	81.51
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	81.32
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	80.47
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	80.37
PF14662	193	CCDC155: Coiled-coil region of CCDC155	80.34
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	80.24

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.1e-52  Score=398.67  Aligned_cols=412  Identities=24%  Similarity=0.351  Sum_probs=324.4

Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCcCCCChhhcCCCChhHHHHHHHHHH-HHhccCCCCchhhhcHHHhhcCCCchhHHHHH
Q 014013            1 MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSV   79 (432)
Q Consensus         1 ms~~~fP~l~~~eIv~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l-~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~s~   79 (432)
                      |+.|+||+|+++|||.||++|||| ++..+|.+|||++|.++|+.|+ .|||++..+. ++..+.+..+.+||+.|.+|+
T Consensus         1 ~~~~~fP~L~~aEIv~~l~~~~i~-~at~ei~~PTs~~~~~lYe~il~~~mgl~~~~l-~~r~n~~~~~~EN~ei~~~sL   78 (446)
T KOG4438|consen    1 RNAYEFPRLSVAEIVICLKDAQIA-SATEEILTPTSDYVSPLYEVILEYYMGLDEEEL-LQRDNEALEQLENPEIHAESL   78 (446)
T ss_pred             CCccccCCCCHHHHHHHHHhcCcc-cchhhccCCCcccchhHHHHHHHHHHhhhHHHH-hhhhHHHHhcccCHHHHHHHH
Confidence            789999999999999999999996 5556699999999999999999 9999984443 444455677889999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 014013           80 QIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELED-------KISQLNAEIAA  152 (432)
Q Consensus        80 ~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~-------~i~~l~~~i~~  152 (432)
                      .+..|+++|..||..|||+ ||++.||++|++.||.    ++||+++| |+.||++++++..       ....++.++++
T Consensus        79 ~~~~l~ki~~~Fl~~i~v~-dF~~~DLlkPes~Rtq----~~LSavvN-fa~fRe~k~~~~~~~~~q~eslle~~~q~da  152 (446)
T KOG4438|consen   79 QFKLLCKILDMFLMNIGVL-DFSFKDLLKPESSRTQ----RFLSAVVN-FALFREEKMDLYRPFIQQLESLLELRKQLDA  152 (446)
T ss_pred             HHHHHHHHHHHHHHhcCcC-CCchhhhcCccHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999 9999999999999999    99999999 9999999998633       22234444444


Q ss_pred             HH----HHHH-------hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHH
Q 014013          153 YN----EVRE-------RELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA-LDEKFSQTEFDLVQSVQQN  220 (432)
Q Consensus       153 ~~----~k~~-------~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~e-l~~~l~~~~~~l~~l~~e~  220 (432)
                      ..    .+.+       ...+.+++++..|++|...|.++...++.+..++.+++..... ....++.+.+.++++++..
T Consensus       153 ~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~  232 (446)
T KOG4438|consen  153 KYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENA  232 (446)
T ss_pred             HHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            32    2222       3566789999999999999999999999999999999988888 5566778888899999999


Q ss_pred             HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          221 ADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEK----TTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSI  296 (432)
Q Consensus       221 ~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~e~~~l~~~q~~----~~~l~~~~k~~~dv~~~~~~l~~~~~~~~~~ke~  296 (432)
                      ..|+++||+||++|+..+++|+..+.+    ++.+|+.|+++    .+++..+.-+..|+..+++.+++...+..+.+..
T Consensus       233 ~~LktqIV~sPeKL~~~leemk~~l~k----~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~  308 (446)
T KOG4438|consen  233 NCLKTQIVQSPEKLKEALEEMKDLLQK----EKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETK  308 (446)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            999999999999999999999998854    45555555443    2344444444557777777777766544443332


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 014013          297 EKDYKSLKARLNDDVVLDKSLEA--KLIERQGKVEQLD-ELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKK  373 (432)
Q Consensus       297 e~~~~~~k~~l~~~~~~~~~l~~--ql~~~~~k~~~l~-~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~  373 (432)
                      -..++..-....-.......+..  ....|.+++-.+. +.....+....++.++..+.++...+.|..++++|+.+...
T Consensus       309 ~v~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~k  388 (446)
T KOG4438|consen  309 VVELKEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAMMDDNIEKYNVVRQKRNAKVKK  388 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhccHHHH
Confidence            22222211000000000011111  1234555554444 34445566667778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH--hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014013          374 VEAVVTEVDAITS--KTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL  424 (432)
Q Consensus       374 ie~~~~~i~~ie~--~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~~  424 (432)
                      ++.....+..++.  +++..++.|+..+.+|..+|..|..||..|+++|...|
T Consensus       389 ie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~~y~AEl~~~m  441 (446)
T KOG4438|consen  389 IEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVELYEAELKRIM  441 (446)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999  99999999999999999999999999999999998765

>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle

Probab=100.00  E-value=5.6e-35  Score=255.89  Aligned_cols=133  Identities=38%  Similarity=0.718  Sum_probs=95.3

Q ss_pred             CCCCCCCCCHHHHHHHHhhcCcCCCChhhcCCCChhHHHHHHHHHH-HHhccCCCCchhhhcHHHhhcCCCchhHHHHHH
Q 014013            2 SKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQ   80 (432)
Q Consensus         2 s~~~fP~l~~~eIv~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l-~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~s~~   80 (432)
                      ++|+||+|+++||++||++||++ +|++||.||||++|++||++|| .++|++.++..+ +.+++.++++||++|.++++
T Consensus         5 ~~~~FP~L~~~eIv~~L~~~~~~-~t~~dl~kPt~e~v~~ly~~~L~~~~g~~~e~~~~-~~~~~~~~~~~pe~~~~~i~   82 (146)
T PF03800_consen    5 NKYSFPLLSPDEIVNCLQECGIP-VTEEDLKKPTPEFVQKLYERFLETFLGISPEDIEQ-PMFEALESLEYPELHEESIP   82 (146)
T ss_dssp             ------S--HHHHHHHHHHHT---HHHHC--G--HHHHHHHHHHHHHHHHT--CGGG---C---TT---S-GGGGTTTHH
T ss_pred             ccCCCCCCCHHHHHHHHHHCCCC-cCHHHHcCCCHHHHHHHHHHHHHHHHCcCHHHHhh-hhHHHHhcccchhhHHHHHH
Confidence            36999999999999999999995 9999999999999999999999 999997554443 66778889999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 014013           81 IMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDK  142 (432)
Q Consensus        81 ~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~  142 (432)
                      +++||++|++||..|||+ |||++||++|+|+||+    ++||++|| |.+||+++....++
T Consensus        83 ~l~l~~~~~~~~~~~gv~-DF~l~Dl~~P~~~R~~----~~LSalIN-F~~Fre~~~~~~~~  138 (146)
T PF03800_consen   83 LLNLFRHLQKFLKDCGVP-DFSLSDLLKPDPKRTR----RILSALIN-FARFREERMDEYEE  138 (146)
T ss_dssp             HHHHHHHHHHHHHHTT------HHHHHS--HHHHH----HHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCC-CCCHHHhcCCcHHHHH----HHHHHHHH-HHHHHHHHHHHHHH
Confidence            999999999999999999 9999999999999999    99999999 99999999865443

It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=2.7e-06  Score=86.82  Aligned_cols=399  Identities=15%  Similarity=0.193  Sum_probs=191.6

Q ss_pred             HHHHHHHHhhcCcC-CCChhhcCCCChhHHHHHHHHHHHHhccCCC---CchhhhcHHHhhcCCC--------------c
Q 014013           11 ATEIVTILTETEIA-VITENDLKNPNPDFVSDLYTRLLIFLDVLHE---DDQGQLDFAALEQLEN--------------P   72 (432)
Q Consensus        11 ~~eIv~~L~~~~~~-~~t~~dl~kPt~~~v~~ly~~~l~~~~~~~~---~~~~~~~~~~~~~~~~--------------p   72 (432)
                      .+.|..+|...||+ .++..-+.+|+.--...+|.++..+++-+-+   ....-+.+ .+-++-|              |
T Consensus        76 ~~~I~~fL~engf~~~iS~k~l~~PS~KdF~~iFkfLY~~Ldp~y~f~~r~EeEV~~-ilK~L~YPf~~siSs~~a~gsp  154 (581)
T KOG0995|consen   76 IRQIYNFLVENGFSHPISIKLLMKPSVKDFIAIFKFLYGFLDPDYEFPERIEEEVVQ-ILKNLKYPFLLSISSLQAAGSP  154 (581)
T ss_pred             HHHHHHHHHHcCCCCChhhhhcCCCccccHHHHHHHHHhccCCCcccchhHHHHHHH-HHHhCCCCcccchhhhccCCCC
Confidence            36789999999993 3899999999999999999988877742111   11111110 1112222              2


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcc-hhHhhh--hHHHHHHHHHHHHHHHH------------
Q 014013           73 DLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRT-EDTKMN--LLRPIAEDLTRLDEQRS------------  137 (432)
Q Consensus        73 e~~~~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~-~~~~~~--~ls~iin~~~~f~eer~------------  137 (432)
                      ..+..-++++.+...|-++-...--.       .  |.-.+- .+..|+  +|.+++.-|..|...-.            
T Consensus       155 H~WP~iL~mlhWlvdlI~~~t~~v~~-------~--~l~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~~~~~~~Elk~~  225 (581)
T KOG0995|consen  155 HNWPHILGMLHWLVDLIRINTALVED-------S--PLEQEEAEDKTMNKLFFDYTIRSYTSFLKGEDNSSELEDELKHR  225 (581)
T ss_pred             CccHHHHHHHHHHHHHHHHhHHHhhc-------c--chhccchHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence            22333344444444443333322111       0  222221 133333  34455554555553111            


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013          138 ------ELEDKISQLNAEIAAYNEVRE---RELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  208 (432)
Q Consensus       138 ------~l~~~i~~l~~~i~~~~~k~~---~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~  208 (432)
                            .+...++.++...+.+.+++.   .....++.++.....|+..+.....--.++......+......+...++.
T Consensus       226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~  305 (581)
T KOG0995|consen  226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEE  305 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence                  112233333333333333322   22334455555555555555555555555555555555666666666666


Q ss_pred             hHHHHHHHHHHHHHHHhhhh---cCHH----------HHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHH
Q 014013          209 TEFDLVQSVQQNADLRSKIV---QSPE----------KLQRTLEEKKSIRE----EARDAEKLAMQSFQEKTTTLEVYQK  271 (432)
Q Consensus       209 ~~~~l~~l~~e~~~L~~~iv---~SPe----------~Lk~~i~el~~~l~----~l~~~e~~~l~~~q~~~~~l~~~~k  271 (432)
                      .+.++..++++++.|+..|.   =||+          +|++.+.++...+.    ++-+.+..+-..|....+.+.-|..
T Consensus       306 kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~  385 (581)
T KOG0995|consen  306 KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNS  385 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666651   1232          33333333332221    1111111111133444444444444


Q ss_pred             HHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 014013          272 TLKKMSKQS------------------------------AQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKL  321 (432)
Q Consensus       272 ~~~dv~~~~------------------------------~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql  321 (432)
                      +...|.-.+                              ..+..+..++..   .+.+.-.+++.+++....+..+..-+
T Consensus       386 l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~---~~~~~~tLq~~~~~~~~~i~E~~~~l  462 (581)
T KOG0995|consen  386 LIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHE---AENELETLQEHFSNKASTIEEKIQIL  462 (581)
T ss_pred             HHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443433331                              233333333322   22334444555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Q 014013          322 IERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQE  401 (432)
Q Consensus       322 ~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~  401 (432)
                      ..++.++..+....+.+.+++..-...++..++.|..+.-...   -.-...+-.....+++++.+.+.+....+.++++
T Consensus       463 ~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~---l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~k  539 (581)
T KOG0995|consen  463 GEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLK---LVLNTSMKEAEELVKSIELELDRMVATGEEERQK  539 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666655555555555444444444444433332221   1112223334455666666666777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccc
Q 014013          402 LASKAEEIVEKFQQYTNSIGTLLP  425 (432)
Q Consensus       402 ~~~~~~~L~~~i~~Y~~~m~~~~~  425 (432)
                      ++.+...+-..|-..+-.|...|+
T Consensus       540 i~~ql~~~i~~i~~~k~~iqs~le  563 (581)
T KOG0995|consen  540 IAKQLFAVIDQISDFKVSIQSSLE  563 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766666555555555544444443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.80  E-value=0.0003  Score=81.28  Aligned_cols=61  Identities=10%  Similarity=0.202  Sum_probs=29.6

Q ss_pred             HHHHHHHHHcCCCCCCCcccccCCCCCcch----hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013           86 SMVKEVVTTVNCPMNFTLKDLIRPDATRTE----DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNA  148 (432)
Q Consensus        86 ~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~----~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~  148 (432)
                      ..+..++..+|++ .-++.-++-=+..++.    .++..+|..+.. +..|..........+.++..
T Consensus       120 ~~~~~~l~~~~~~-~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g-~~~~~~~~~~~~~~l~~~~~  184 (1164)
T TIGR02169       120 SEIHDFLAAAGIY-PEGYNVVLQGDVTDFISMSPVERRKIIDEIAG-VAEFDRKKEKALEELEEVEE  184 (1164)
T ss_pred             HHHHHHHHHcCCC-cCcceEEecchHHHHHCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHH
Confidence            4577888888886 3223222211111111    233356666655 66666555554443333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.63  E-value=0.00099  Score=74.98  Aligned_cols=33  Identities=12%  Similarity=0.283  Sum_probs=17.3

Q ss_pred             HHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHH
Q 014013           89 KEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAE  127 (432)
Q Consensus        89 ~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin  127 (432)
                      .-|...+.|+ .-.+..++.+...|.     .+|..+..
T Consensus       124 ~~f~~~~~~~-Qg~~~~~~~~~~~r~-----~~~~~~~~  156 (880)
T PRK03918        124 HVFLNAIYIR-QGEIDAILESDESRE-----KVVRQILG  156 (880)
T ss_pred             HHhceeEEEe-ccchHHHhcCcHHHH-----HHHHHHhC
Confidence            3445556666 555566665334443     45666554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.60  E-value=0.00088  Score=66.05  Aligned_cols=283  Identities=17%  Similarity=0.241  Sum_probs=145.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          121 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER-ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT  199 (432)
Q Consensus       121 ~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~-~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~  199 (432)
                      -+..+-++|+.|-+.-..++..+..|..+|..+..+... ....-.-...++..+...|..+......+..++..++.+.
T Consensus         5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~   84 (312)
T PF00038_consen    5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL   84 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence            456777888888888888899999999998888877432 2223455667778888888888888888888888888888


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCH---HHHHHHHHHHHHHHHHHHHH---HHHHHHh-H-HHHHHHHH----
Q 014013          200 GALDEKFSQTEFDLVQSVQQNADLRSKIVQSP---EKLQRTLEEKKSIREEARDA---EKLAMQS-F-QEKTTTLE----  267 (432)
Q Consensus       200 ~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SP---e~Lk~~i~el~~~l~~l~~~---e~~~l~~-~-q~~~~~l~----  267 (432)
                      ..+..+++........+..++..|+..+-..-   ..|...+..|+..+.-++..   |...++. + ...+..++    
T Consensus        85 ~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~  164 (312)
T PF00038_consen   85 EDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRS  164 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeeccccc
Confidence            88888888877777777777777775543221   12222333333322111110   1111111 1 01111111    


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          268 -VYQKTLKKMSKQSAQMQAILEQVNSAK-S----IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKE  341 (432)
Q Consensus       268 -~~~k~~~dv~~~~~~l~~~~~~~~~~k-e----~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~  341 (432)
                       .+..++.+|...+.      ..+.+.+ +    ...++..++......+.....+...+..+..+++.|...+..++. 
T Consensus       165 ~dL~~~L~eiR~~ye------~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~-  237 (312)
T PF00038_consen  165 SDLSAALREIRAQYE------EIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRA-  237 (312)
T ss_dssp             --HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ccchhhhhhHHHHHH------HHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhcccc-
Confidence             12222333333321      1111111 1    112222222222222222334444444555555555544444322 


Q ss_pred             HhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          342 RNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI  420 (432)
Q Consensus       342 ~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m  420 (432)
                         +...+...+..+...+   ..++...+..+.....++..+..+|+..    ..+.+.+.+-...|...|.-|..=+
T Consensus       238 ---~~~~Le~~l~~le~~~---~~~~~~~~~~i~~le~el~~l~~~~~~~----~~ey~~Ll~~K~~Ld~EIatYR~LL  306 (312)
T PF00038_consen  238 ---KNASLERQLRELEQRL---DEEREEYQAEIAELEEELAELREEMARQ----LREYQELLDVKLALDAEIATYRKLL  306 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---chhhhhhhHHHHHHHH---HHHHHHHHHhhhccchhHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence               2233334444444444   2334444455555555566555555555    4455677788888888888887543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.59  E-value=0.00087  Score=77.51  Aligned_cols=19  Identities=32%  Similarity=0.370  Sum_probs=7.4

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 014013          121 LLRPIAEDLTRLDEQRSEL  139 (432)
Q Consensus       121 ~ls~iin~~~~f~eer~~l  139 (432)
                      .+..+...+.++......+
T Consensus       178 ~l~~~~~~l~el~~~~~~L  196 (1164)
T TIGR02169       178 ELEEVEENIERLDLIIDEK  196 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333344444433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.57  E-value=0.0025  Score=73.68  Aligned_cols=55  Identities=13%  Similarity=0.369  Sum_probs=27.8

Q ss_pred             HHHHHHHcCCCC-CCC------cccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013           88 VKEVVTTVNCPM-NFT------LKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLN  147 (432)
Q Consensus        88 ~~~~~~~~gv~~-DFt------~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~  147 (432)
                      +..++..+|+.. +|+      +..|...+|...+    .++..++. +..|...+....+.+.++.
T Consensus       124 ~~~~l~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~t~~nL~r~~  185 (1179)
T TIGR02168       124 IQDLFLDTGLGKRSYSIIEQGKISEIIEAKPEERR----AIFEEAAG-ISKYKERRKETERKLERTR  185 (1179)
T ss_pred             HHHHHhccCCCcccchheecccHHHHHcCCHHHHH----HHHHHHcc-HHHHHHHHHHHHHHHHHHH
Confidence            567777777761 222      1122222444333    66666665 6666665555444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=98.56  E-value=0.0012  Score=65.95  Aligned_cols=218  Identities=14%  Similarity=0.131  Sum_probs=115.9

Q ss_pred             HHHHHHHHhhcCc--CCCChhhcCCCChhHHHHHHHHHHHHhc-cCCC--CchhhhcHHHhhcCCCc-------------
Q 014013           11 ATEIVTILTETEI--AVITENDLKNPNPDFVSDLYTRLLIFLD-VLHE--DDQGQLDFAALEQLENP-------------   72 (432)
Q Consensus        11 ~~eIv~~L~~~~~--~~~t~~dl~kPt~~~v~~ly~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~p-------------   72 (432)
                      ..+|+.+|-+-||  | ++...+..|+.--.+-||.|+-.+++ .-+.  .....+. ..+-.+.||             
T Consensus       110 ~~~I~~yL~engfd~p-is~k~l~~PS~k~F~~IFK~LY~~lDp~f~F~~r~E~eV~-~~lKnL~YPfl~sI~kSqlsAI  187 (622)
T COG5185         110 QEEIYDYLKENGFDIP-ISIKFLKQPSQKGFIIIFKWLYLRLDPGFGFTKRIENEVY-QILKNLRYPFLESINKSQLSAI  187 (622)
T ss_pred             HHHHHHHHHHcCCCcc-hhHHHhcCCccccHHHHHHHHHhccCCCCCcchhhHHHHH-HHHHhcCCchhhhhhHhHhhcc
Confidence            4689999988766  6 88899999999999999999887664 1111  1111110 122233333             


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHH---------------
Q 014013           73 --DLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQ---------------  135 (432)
Q Consensus        73 --e~~~~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~ee---------------  135 (432)
                        .....-++++-+...+..-+..|--+ -.|+--  .....|.++.  -+|.+++.-|-.|-+.               
T Consensus       188 ~ph~Wp~iLgMlhW~V~li~~~~~~~~~-~~tl~q--q~~~e~~Vek--~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f  262 (622)
T COG5185         188 GPHNWPKILGMLHWMVRLIIKLDMCLQP-LKTLDQ--QDRYELMVEK--LLFDYFTESYKSFLKLEDNYEPSEQELKLGF  262 (622)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhh-hchHhh--ccHHHHHHHH--HHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Confidence              22233444444444444444445433 222211  0011122200  2555666556555531               


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013          136 ---RSELEDKISQLNAEIAAYNEVRER---ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT  209 (432)
Q Consensus       136 ---r~~l~~~i~~l~~~i~~~~~k~~~---~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~  209 (432)
                         -..+...++.++.+.+.+..++.+   ....++.++.+...|+.....+..--.++.....++-.....|...++..
T Consensus       263 ~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~k  342 (622)
T COG5185         263 EKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELK  342 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence               112344566666666666555543   23345555566666666555555555555555555555555666666666


Q ss_pred             HHHHHHHHHHHHHHHhhhh---cCHHHHH
Q 014013          210 EFDLVQSVQQNADLRSKIV---QSPEKLQ  235 (432)
Q Consensus       210 ~~~l~~l~~e~~~L~~~iv---~SPe~Lk  235 (432)
                      +.++..++..++.|+.++.   -||+..+
T Consensus       343 Eeei~~L~~~~d~L~~q~~kq~Is~e~fe  371 (622)
T COG5185         343 EEEIKALQSNIDELHKQLRKQGISTEQFE  371 (622)
T ss_pred             HHHHHHHHhhHHHHHHHHHhcCCCHHHHH
Confidence            6666666666666666652   3554444

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=0.0018  Score=66.74  Aligned_cols=227  Identities=14%  Similarity=0.247  Sum_probs=112.9

Q ss_pred             CCCCCCCCHHHHHHHHhhcCcC-CCChhhcCCC-C---hhHHHHHHHHHHHHhccCCCCchhhhcHHHhh--cCCCchhH
Q 014013            3 KFDYPRLSATEIVTILTETEIA-VITENDLKNP-N---PDFVSDLYTRLLIFLDVLHEDDQGQLDFAALE--QLENPDLH   75 (432)
Q Consensus         3 ~~~fP~l~~~eIv~~L~~~~~~-~~t~~dl~kP-t---~~~v~~ly~~~l~~~~~~~~~~~~~~~~~~~~--~~~~pe~~   75 (432)
                      .|-||.==..|++.||.++|.| ..+..-+.-| +   -+.|-....|++....+...         ..+  .++-.+--
T Consensus       119 ~y~f~~r~EeEV~~ilK~L~YPf~~siSs~~a~gspH~WP~iL~mlhWlvdlI~~~t~---------~v~~~~l~q~~~e  189 (581)
T KOG0995|consen  119 DYEFPERIEEEVVQILKNLKYPFLLSISSLQAAGSPHNWPHILGMLHWLVDLIRINTA---------LVEDSPLEQEEAE  189 (581)
T ss_pred             CcccchhHHHHHHHHHHhCCCCcccchhhhccCCCCCccHHHHHHHHHHHHHHHHhHH---------HhhccchhccchH
Confidence            3667755568999999999986 1222233222 2   34555666777733322101         111  11111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 014013           76 VRSVQIMKLYSMVKEVVTTV-NCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNA---EIA  151 (432)
Q Consensus        76 ~~s~~~l~~~~~~~~~~~~~-gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~---~i~  151 (432)
                      ++++.-+-|-..|+.+...+ |-+ ||+  ++-.-.-.|+.    ..+..+.++++++......+.+.+...+.   .+.
T Consensus       190 d~~m~k~f~dy~~~~Y~~fl~g~d-~~~--~~~~Elk~~l~----~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~e  262 (581)
T KOG0995|consen  190 DKTMNKLFFDYTIRSYTSFLKGED-NSS--ELEDELKHRLE----KYFTSIANEIEDLKKTNRELEEMINEREKDPGKEE  262 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCc-ccc--hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHH
Confidence            23333122222233333333 555 643  33344455677    77777888888888877776655553221   222


Q ss_pred             HHHHHHHh-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHH
Q 014013          152 AYNEVRER-------ELPLVQEVDAKVKELRQTIQDLNKHQVSLR------------------------TTLNKLKEKTG  200 (432)
Q Consensus       152 ~~~~k~~~-------~~~~i~el~~e~~eLe~~L~~l~~~q~~l~------------------------~~~~~~k~e~~  200 (432)
                      -++.+.+.       -.+-+.++....+.+...|..++..+....                        ++++....+++
T Consensus       263 slre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~  342 (581)
T KOG0995|consen  263 SLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERN  342 (581)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            22222221       111223333333333334444444333333                        44555555555


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 014013          201 ALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR  245 (432)
Q Consensus       201 el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l  245 (432)
                      ++...|..++..+..+.+++-.++..+...-+.++..+-++.+.+
T Consensus       343 ~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~  387 (581)
T KOG0995|consen  343 KLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLI  387 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666666666666666666666666666666666665544

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.54  E-value=0.0026  Score=73.58  Aligned_cols=54  Identities=6%  Similarity=0.097  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014013          370 RQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTL  423 (432)
Q Consensus       370 ~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~  423 (432)
                      ...+.+.+......++.-|.++...+..--......|..+..+|..++..+...
T Consensus       998 l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~ 1051 (1179)
T TIGR02168       998 LKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPK 1051 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555556666666655555444444567777888888777777653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=98.50  E-value=0.0016  Score=76.21  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          142 KISQLNAEIAAYNEVRERE--LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL  202 (432)
Q Consensus       142 ~i~~l~~~i~~~~~k~~~~--~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el  202 (432)
                      ++..++.+++++..+....  ...++++..+...++.++..+......+..+......+...|
T Consensus       800 ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       800 ELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444333221  123455555666666555555555444444444444444444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.44  E-value=0.0082  Score=69.56  Aligned_cols=58  Identities=12%  Similarity=0.301  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHcCCCCCCCc--------ccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013           85 YSMVKEVVTTVNCPMNFTL--------KDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNA  148 (432)
Q Consensus        85 ~~~~~~~~~~~gv~~DFt~--------~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~  148 (432)
                      ++-+..+|...|+. .=++        ..|+.-.|.-.+    .+|..+.- ...|..++.+.+.++.+...
T Consensus       121 ~~dI~~l~~~~gi~-~~~~~iV~QG~V~~i~~~kp~err----~iiEEaaG-v~~y~~r~~ea~~~L~~~~~  186 (1163)
T COG1196         121 LKDIQDLLADSGIG-KESYSIVSQGKVEEIINAKPEERR----KLIEEAAG-VSKYKERKEEAERKLERTEE  186 (1163)
T ss_pred             HHHHHHHHHhcCCC-CCCCceeecccHHHHHcCCHHHHH----HHHHHHhc-hHHHHHHHHHHHHHHHHHHH
Confidence            44688888888876 1111        133333333333    56666555 56666666655444444333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.42  E-value=0.0058  Score=72.09  Aligned_cols=70  Identities=23%  Similarity=0.390  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHH
Q 014013          296 IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEA  369 (432)
Q Consensus       296 ~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~  369 (432)
                      .+-++..+..++.+....+..++.++.+++.++..|.+.++..+..+. +++   +....|..+++.+..+++.
T Consensus      1074 ke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~-K~e---k~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1074 KESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA-KAE---RQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHH
Confidence            344556667777777777888888888888888888888776443222 222   2333344555555444444

>PRK02224 chromosome segregation protein; Provisional

Probab=98.42  E-value=0.0075  Score=67.97  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013          190 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  224 (432)
Q Consensus       190 ~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~  224 (432)
                      ..+..+..+...+..++..+...+......+..++
T Consensus       412 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~  446 (880)
T PRK02224        412 DFLEELREERDELREREAELEATLRTARERVEEAE  446 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.41  E-value=0.0022  Score=61.44  Aligned_cols=78  Identities=23%  Similarity=0.376  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q 014013          165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS  243 (432)
Q Consensus       165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~  243 (432)
                      .++.+...++...+.++......+-.++..++.+..++..++..+-..+..+....+... ..-.|+..|.+.+..+--
T Consensus        44 deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~  121 (294)
T COG1340          44 DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEK  121 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHH
Confidence            344444444555555555555555555555555555555555554444443333333333 345677888888777643

>PRK02224 chromosome segregation protein; Provisional

Probab=98.40  E-value=0.0026  Score=71.61  Aligned_cols=22  Identities=9%  Similarity=0.376  Sum_probs=10.6

Q ss_pred             CcccccCCCCCcchhHhhhhHHHHHH
Q 014013          102 TLKDLIRPDATRTEDTKMNLLRPIAE  127 (432)
Q Consensus       102 t~~Dl~~P~~~R~~~~~~~~ls~iin  127 (432)
                      .+..++.-+|..-.    .+|..+.+
T Consensus       139 e~~~~l~~~p~~R~----~ii~~l~~  160 (880)
T PRK02224        139 EVNKLINATPSDRQ----DMIDDLLQ  160 (880)
T ss_pred             ChHHHHcCCHHHHH----HHHHHHhC
Confidence            34444443333333    56666654

>TIGR00606 rad50 rad50

Probab=98.39  E-value=0.012  Score=69.11  Aligned_cols=193  Identities=11%  Similarity=0.161  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHhhhh-----cCHHH
Q 014013          165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE------KFSQTEFDLVQSVQQNADLRSKIV-----QSPEK  233 (432)
Q Consensus       165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~------~l~~~~~~l~~l~~e~~~L~~~iv-----~SPe~  233 (432)
                      ..+..+..+++.++..+......+...+..++.+...+..      .+..+..++..++..++.|...+.     .+++.
T Consensus       747 p~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~e  826 (1311)
T TIGR00606       747 PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQ  826 (1311)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHH
Confidence            3444455555555555555555555555555555544322      112224445555555555544433     35566


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 014013          234 LQRTLEEKKSIREEARD-AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVV  312 (432)
Q Consensus       234 Lk~~i~el~~~l~~l~~-~e~~~l~~~q~~~~~l~~~~k~~~dv~~~~~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~~  312 (432)
                      |+..+..++..+..+.. .+... ..+..+...+..+.....++...   ...+...+......+.++..+...+...+.
T Consensus       827 le~ei~~~~~el~~l~~~~e~l~-~e~e~~~~eI~~Lq~ki~el~~~---klkl~~~l~~r~~le~~L~el~~el~~l~~  902 (1311)
T TIGR00606       827 VNQEKQEKQHELDTVVSKIELNR-KLIQDQQEQIQHLKSKTNELKSE---KLQIGTNLQRRQQFEEQLVELSTEVQSLIR  902 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666666555433211 01000 00111111111111101111111   111111222333344444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhh
Q 014013          313 LDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEME  361 (432)
Q Consensus       313 ~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~  361 (432)
                      .++.+..++..+...+..+.................++.++..++..+.
T Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  951 (1311)
T TIGR00606       903 EIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK  951 (1311)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555544444455555555444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=98.38  E-value=0.0072  Score=68.05  Aligned_cols=36  Identities=14%  Similarity=0.292  Sum_probs=16.4

Q ss_pred             HHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 014013          358 LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE  393 (432)
Q Consensus       358 ~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~  393 (432)
                      ..|..+....+..+..+..+...+..++.++..++.
T Consensus       659 ~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~  694 (880)
T PRK03918        659 EEYEELREEYLELSRELAGLRAELEELEKRREEIKK  694 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444445545544444433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.34  E-value=0.0059  Score=63.47  Aligned_cols=20  Identities=10%  Similarity=0.162  Sum_probs=11.8

Q ss_pred             HHHHHHHHHcCCCCCCCccc
Q 014013           86 SMVKEVVTTVNCPMNFTLKD  105 (432)
Q Consensus        86 ~~~~~~~~~~gv~~DFt~~D  105 (432)
                      +++..--..||+.--|.|.-
T Consensus        93 cYv~~~g~V~G~S~pFqf~~  112 (546)
T PF07888_consen   93 CYVDQKGEVRGASTPFQFRA  112 (546)
T ss_pred             EEECCCccEEEecCCcccCC
Confidence            33344445578776787763

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK01156 chromosome segregation protein; Provisional

Probab=98.33  E-value=0.0057  Score=69.03  Aligned_cols=33  Identities=33%  Similarity=0.507  Sum_probs=16.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY  153 (432)
Q Consensus       120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~  153 (432)
                      .+|..+.. +..|......+.+.+..++..+..+
T Consensus       153 ~~ld~~~~-~~~~~~~~~~~~~~~~~~~~ei~~l  185 (895)
T PRK01156        153 KILDEILE-INSLERNYDKLKDVIDMLRAEISNI  185 (895)
T ss_pred             HHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666665 5555544444444444444444333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.30  E-value=0.0045  Score=68.43  Aligned_cols=119  Identities=15%  Similarity=0.199  Sum_probs=73.4

Q ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 014013          300 YKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVT  379 (432)
Q Consensus       300 ~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~  379 (432)
                      +......+...++.+...+..+.++...+..+++..+.+..    ....+..+..++..+|.+-..-+.+....+..+..
T Consensus       923 i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e----~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~  998 (1293)
T KOG0996|consen  923 IAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTE----ELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKS  998 (1293)
T ss_pred             HHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445444455555555555555555555554443322    22233344455555555555555555666666677


Q ss_pred             HHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014013          380 EVDAITSKTKFVKE---SGAAKLQELASKAEEIVEKFQQYTNSIGT  422 (432)
Q Consensus       380 ~i~~ie~~~~~~k~---~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~  422 (432)
                      .+..+...+++++.   .++..+.++..++..+.+.+..|...+.+
T Consensus       999 ~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~ 1044 (1293)
T KOG0996|consen  999 ELENIKKSENELKAERIDIENKLEAINGELNEIESKIKQPEKELKK 1044 (1293)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHhhCc
Confidence            77777777777766   57888889999999999999999876654

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.24  E-value=0.027  Score=66.70  Aligned_cols=127  Identities=13%  Similarity=0.227  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 014013          296 IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEK---ERNLKSEDATRAFENVKLEMESKRQDLEARQK  372 (432)
Q Consensus       296 ~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~---~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~  372 (432)
                      .+-+++.++..+.+....+..|+.++......+.++..+.+....   .....+.++..++..|.++++.-+..+++.++
T Consensus      1046 le~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek 1125 (1930)
T KOG0161|consen 1046 LEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAER 1125 (1930)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555566666666555555555555444322   33344455555555555555554444444444


Q ss_pred             HHHHHHHHHHHHHHhHHHH----------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014013          373 KVEAVVTEVDAITSKTKFV----------KESGAAKLQELASKAEEIVEKFQQYTNSIGT  422 (432)
Q Consensus       373 ~ie~~~~~i~~ie~~~~~~----------k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~  422 (432)
                      .......++.++..++.+.          ....+.|+..+...++.=..+...++..|-+
T Consensus      1126 ~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~ 1185 (1930)
T KOG0161|consen 1126 QRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRK 1185 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            4444444444443333322          2345566667776666666666666666543

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.22  E-value=0.016  Score=63.39  Aligned_cols=148  Identities=19%  Similarity=0.263  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          261 EKTTTLEVYQKTLKKMSKQSAQMQA-ILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLE  339 (432)
Q Consensus       261 ~~~~~l~~~~k~~~dv~~~~~~l~~-~~~~~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~  339 (432)
                      .....++.+.+-..++...+..++. +++.-..+-........+..........++.|.-.+.....++.++..++...+
T Consensus       462 e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~  541 (775)
T PF10174_consen  462 ERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR  541 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4455566666666666666644443 222222222222222222222222233367777778888888888887776621


Q ss_pred             HHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 014013          340 KERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYT  417 (432)
Q Consensus       340 ~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~  417 (432)
                           ...+.+..+..|..++.....+.+.-+.+|+.+.+-+...+.+-...    +++|..+..+.....-|+..|.
T Consensus       542 -----~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~k----e~ki~~LekeLek~~~~~~~~~  610 (775)
T PF10174_consen  542 -----ANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDK----EKKIGELEKELEKAQMHLAKQQ  610 (775)
T ss_pred             -----hCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHhccchhhhh
Confidence                 11233445555666665556666666666666665555444443333    5555555555444444444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.20  E-value=0.0036  Score=59.28  Aligned_cols=101  Identities=19%  Similarity=0.248  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013          142 KISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA  221 (432)
Q Consensus       142 ~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~  221 (432)
                      ++..++.+++....+.......+..........++++..|++....+...++....+......+|..+............
T Consensus         2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k   81 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK   81 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666665555555555666666667777777777777777777777777777777777777777777777777


Q ss_pred             HHHhhhhcCHHHHHHHHHHHH
Q 014013          222 DLRSKIVQSPEKLQRTLEEKK  242 (432)
Q Consensus       222 ~L~~~iv~SPe~Lk~~i~el~  242 (432)
                      .|..+...+-+++...=..++
T Consensus        82 ~lE~r~~~~eeri~~lE~~l~  102 (237)
T PF00261_consen   82 VLENREQSDEERIEELEQQLK  102 (237)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHH
Confidence            777777766666654333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.16  E-value=0.0097  Score=58.63  Aligned_cols=77  Identities=12%  Similarity=0.172  Sum_probs=44.5

Q ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014013          152 AYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQ-VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV  228 (432)
Q Consensus       152 ~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q-~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv  228 (432)
                      .++.+...--..|..|+.+|..|+.+|..+.... .........|..+...+...|..+......+..+++++...+.
T Consensus         8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~   85 (312)
T PF00038_consen    8 SLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELE   85 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHH
Confidence            3444444445567889999999999999988873 3444455666666666666666665555555555555554443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.15  E-value=0.0026  Score=67.90  Aligned_cols=97  Identities=18%  Similarity=0.252  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT  199 (432)
Q Consensus       120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~  199 (432)
                      .+|..+.+ +..|..-.....+.+..++.+++.+..........+       ..+...+..+....   ......++.+.
T Consensus       154 ~il~~l~~-~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i-------~~~~~~i~~~~~~~---~~~i~~l~~e~  222 (562)
T PHA02562        154 KLVEDLLD-ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQI-------KTYNKNIEEQRKKN---GENIARKQNKY  222 (562)
T ss_pred             HHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHH---HHHHHHHHHHH
Confidence            57777766 665554333344444455555444444333322222       22222222222211   23455555555


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013          200 GALDEKFSQTEFDLVQSVQQNADLRSKI  227 (432)
Q Consensus       200 ~el~~~l~~~~~~l~~l~~e~~~L~~~i  227 (432)
                      ..+......+...+..++.++..+...+
T Consensus       223 ~~l~~~~~~l~~~l~~l~~~i~~l~~~i  250 (562)
T PHA02562        223 DELVEEAKTIKAEIEELTDELLNLVMDI  250 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5555555555555666666665555443

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.12  E-value=0.013  Score=58.50  Aligned_cols=164  Identities=10%  Similarity=0.115  Sum_probs=100.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014013          256 MQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQ-GKVEQLDEL  334 (432)
Q Consensus       256 l~~~q~~~~~l~~~~k~~~dv~~~~~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~-~k~~~l~~~  334 (432)
                      +.+++.....+..|.+++.+.......++.....+...-+.+.+......++.-. .....+..|+..+. .+..+.+..
T Consensus       278 v~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~l-k~~e~~~kqL~~~~kek~~~~Qd~  356 (446)
T KOG4438|consen  278 VTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKL-KMFENLTKQLNELKKEKESRRQDL  356 (446)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777777777666666555555554444333333333443222222111 11245667777666 777777777


Q ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 014013          335 QQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVT--EVDAITSKTKFVKESGAAKLQELASKAEEIVEK  412 (432)
Q Consensus       335 ~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~--~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~  412 (432)
                      -+++.+...++++......+..+.+...+....+++...+..+.-  ++.....+-...-.+++-+.--+..-.....+.
T Consensus       357 ~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~~y~AE  436 (446)
T KOG4438|consen  357 ENRKTESVKAMMDDNIEKYNVVRQKRNAKVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVELYEAE  436 (446)
T ss_pred             HHhhHHHHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888999999999999999999999999999988777775544  444444443333334444444444445555556


Q ss_pred             HHHHHHHH
Q 014013          413 FQQYTNSI  420 (432)
Q Consensus       413 i~~Y~~~m  420 (432)
                      ...||..+
T Consensus       437 l~~~m~ks  444 (446)
T KOG4438|consen  437 LKRIMIKS  444 (446)
T ss_pred             HHHHHHhc
Confidence            66666543

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.11  E-value=0.023  Score=60.86  Aligned_cols=32  Identities=25%  Similarity=0.122  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 014013          210 EFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK  241 (432)
Q Consensus       210 ~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el  241 (432)
                      ...+..++.+...|...+..=|.-+...-..+
T Consensus       197 ~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~  228 (569)
T PRK04778        197 REILDQLEEELAALEQIMEEIPELLKELQTEL  228 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455666666666666666665555443333

>PRK01156 chromosome segregation protein; Provisional

Probab=98.06  E-value=0.041  Score=62.19  Aligned_cols=16  Identities=13%  Similarity=-0.012  Sum_probs=7.2

Q ss_pred             CCCChhHHHHHHHHHH
Q 014013           32 KNPNPDFVSDLYTRLL   47 (432)
Q Consensus        32 ~kPt~~~v~~ly~~~l   47 (432)
                      .=||..==++|+..+.
T Consensus        29 ~G~NGsGKSsileAI~   44 (895)
T PRK01156         29 TGKNGAGKSSIVDAIR   44 (895)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            3444444444554444

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.05  E-value=0.038  Score=61.45  Aligned_cols=122  Identities=19%  Similarity=0.301  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE-VRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG  200 (432)
Q Consensus       122 ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~-k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~  200 (432)
                      ++...++++.+.++...+...+......++.... ..+..+..-..+......++.....+++....+..+.-+.++...
T Consensus       329 ~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK  408 (1293)
T KOG0996|consen  329 LYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLK  408 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444544444444444443333331111 112222233445555566666666666666666666666666666


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q 014013          201 ALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREE  247 (432)
Q Consensus       201 el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~  247 (432)
                      .+..++..+..++...+.++..++    ..|++....+.++...+..
T Consensus       409 ~~~~k~kKleke~ek~~~~~~e~e----~~pe~~~~~i~~~~~ei~~  451 (1293)
T KOG0996|consen  409 RLTSKIKKLEKEIEKARRKKSELE----KAPEKARIEIQKCQTEIEQ  451 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHH----hCchhhHhHHHHHHHHHHH
Confidence            666666666666666666654444    5677777666666655433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.02  E-value=0.063  Score=62.87  Aligned_cols=74  Identities=15%  Similarity=0.179  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014013          349 ATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGT  422 (432)
Q Consensus       349 ~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~  422 (432)
                      +......+..+.+...+.+.....-++.......+....+..++..+.........++.+|.+.+..-.+....
T Consensus       289 ~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~  362 (1822)
T KOG4674|consen  289 WKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSA  362 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence            33445556666666666666666667777777777777777888888888888888888888887776666554

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.01  E-value=0.068  Score=62.82  Aligned_cols=74  Identities=9%  Similarity=0.162  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-cCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013           74 LHVRSVQIMKLYSMVKEVVTT-VNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAA  152 (432)
Q Consensus        74 ~~~~s~~~l~~~~~~~~~~~~-~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~  152 (432)
                      -|.-|+.-+...+..+.||+. ||.+-.+...|..++...|-.     +|    .+.+.++.++.....++...+..+..
T Consensus       241 ~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~-----li----EEAag~r~rk~eA~kkLe~tE~nL~r  311 (1486)
T PRK04863        241 ENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRV-----HL----EEALELRRELYTSRRQLAAEQYRLVE  311 (1486)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHH-----HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667777778888877 677644555566555554443     33    33355566555554444444444444


Q ss_pred             HHHH
Q 014013          153 YNEV  156 (432)
Q Consensus       153 ~~~k  156 (432)
                      +...
T Consensus       312 I~di  315 (1486)
T PRK04863        312 MARE  315 (1486)
T ss_pred             HHHH
Confidence            4333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.98  E-value=0.032  Score=58.16  Aligned_cols=28  Identities=11%  Similarity=0.030  Sum_probs=15.2

Q ss_pred             CCChhhcCCCChhHHHHHHHHHH-HHhcc
Q 014013           25 VITENDLKNPNPDFVSDLYTRLL-IFLDV   52 (432)
Q Consensus        25 ~~t~~dl~kPt~~~v~~ly~~~l-~~~~~   52 (432)
                      .|.+..|++|..+|-+-.|..-. .+.|+
T Consensus        76 ~F~ayyLPk~~~e~YqfcYv~~~g~V~G~  104 (546)
T PF07888_consen   76 QFQAYYLPKDDDEFYQFCYVDQKGEVRGA  104 (546)
T ss_pred             EECcccCCCCCCCeEEEEEECCCccEEEe
Confidence            45666666666665554454444 44444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.98  E-value=0.017  Score=54.76  Aligned_cols=49  Identities=14%  Similarity=0.237  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013          369 ARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG  421 (432)
Q Consensus       369 ~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~  421 (432)
                      ....+.+.....+..++..+..+    +.++......|..+...+..-+++|.
T Consensus       187 eaE~Rae~aE~~v~~Le~~id~l----e~eL~~~k~~~~~~~~eld~~l~el~  235 (237)
T PF00261_consen  187 EAENRAEFAERRVKKLEKEIDRL----EDELEKEKEKYKKVQEELDQTLNELN  235 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33445555566666666666666    55556666666666666666655553

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.91  E-value=0.025  Score=54.37  Aligned_cols=123  Identities=22%  Similarity=0.301  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          124 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD  203 (432)
Q Consensus       124 ~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~  203 (432)
                      -+...+..+.+.|..+...+..+....++++.+..+....+.++..+.+++=.++.+++.....+...+..+-.....+.
T Consensus        17 ~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~   96 (294)
T COG1340          17 QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK   96 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444667777777777788888888888877777766667777777777777777777766666666666666666666


Q ss_pred             HHhh---hhHHHHHHHHHHHHHHHhhhhcC---HH---HHHHHHHHHHHHHH
Q 014013          204 EKFS---QTEFDLVQSVQQNADLRSKIVQS---PE---KLQRTLEEKKSIRE  246 (432)
Q Consensus       204 ~~l~---~~~~~l~~l~~e~~~L~~~iv~S---Pe---~Lk~~i~el~~~l~  246 (432)
                      ...+   -..-.+..+..++.+|.-...++   |+   ++-..|.+++..+.
T Consensus        97 e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le  148 (294)
T COG1340          97 EKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELE  148 (294)
T ss_pred             HHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence            6665   34556777788888887776444   43   34455556655553

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.81  E-value=0.023  Score=59.24  Aligned_cols=127  Identities=14%  Similarity=0.238  Sum_probs=61.0

Q ss_pred             CCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhcchhHHH
Q 014013          101 FTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR--------------ERELPLVQE  166 (432)
Q Consensus       101 Ft~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~--------------~~~~~~i~e  166 (432)
                      =+++++|.-.-...+    +++...-..-+.|.-+-..+.++++.++.........+              ...++.+..
T Consensus        84 s~ik~~ye~El~~ar----~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~  159 (546)
T KOG0977|consen   84 SGIKAKYEAELATAR----KLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINT  159 (546)
T ss_pred             cchhHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHH
Confidence            567777766655555    55555444344444444444444444333333321111              122333344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhHHHHHHHHHHHHHHHhhhhcCH
Q 014013          167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG-----------ALDEKFSQTEFDLVQSVQQNADLRSKIVQSP  231 (432)
Q Consensus       167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~-----------el~~~l~~~~~~l~~l~~e~~~L~~~iv~SP  231 (432)
                      +..+++.++.++..|+.+...+..++..++....           ....-++++.|....-++++..+..+...+|
T Consensus       160 ~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~  235 (546)
T KOG0977|consen  160 LKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDT  235 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc
Confidence            4444455555555555555554444444443221           1222334455666666677777777776666

>PRK11637 AmiB activator; Provisional

Probab=97.77  E-value=0.067  Score=55.21  Aligned_cols=16  Identities=25%  Similarity=0.424  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q 014013          139 LEDKISQLNAEIAAYN  154 (432)
Q Consensus       139 l~~~i~~l~~~i~~~~  154 (432)
                      +.+++.+++.++.+..
T Consensus        45 ~~~~l~~l~~qi~~~~   60 (428)
T PRK11637         45 NRDQLKSIQQDIAAKE   60 (428)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            3334444444433333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.75  E-value=0.12  Score=57.42  Aligned_cols=23  Identities=22%  Similarity=-0.003  Sum_probs=14.5

Q ss_pred             hcCCCChhHHHHHHHHHHHHhcc
Q 014013           30 DLKNPNPDFVSDLYTRLLIFLDV   52 (432)
Q Consensus        30 dl~kPt~~~v~~ly~~~l~~~~~   52 (432)
                      -|.=|+..-=.-|++.+...||.
T Consensus        66 fI~G~NGSGKSAIltAl~lglG~   88 (1074)
T KOG0250|consen   66 FIVGNNGSGKSAILTALTLGLGG   88 (1074)
T ss_pred             EeecCCCCcHHHHHHHHHHhhcc
Confidence            45556655556677777777764

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.73  E-value=0.19  Score=59.09  Aligned_cols=48  Identities=19%  Similarity=0.282  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 014013          165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD  212 (432)
Q Consensus       165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~  212 (432)
                      ..+.++...|+.+=.-+......|..++..+-.+...+...+.++.+.
T Consensus       741 ~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~  788 (1822)
T KOG4674|consen  741 EKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQ  788 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444455555555555555555555444444333

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.57  E-value=0.15  Score=54.36  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=34.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013          161 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI  227 (432)
Q Consensus       161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i  227 (432)
                      ...++.+..+...+..++..++.....+....   ....+.+...+..+......+..++..|+..+
T Consensus       180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~---~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i  243 (562)
T PHA02562        180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKN---GENIARKQNKYDELVEEAKTIKAEIEELTDEL  243 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444432   24455666666666666666666666666665

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.52  E-value=0.17  Score=56.73  Aligned_cols=60  Identities=18%  Similarity=0.258  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013          166 EVDAKVKELRQTIQDLNKHQVSL-RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  225 (432)
Q Consensus       166 el~~e~~eLe~~L~~l~~~q~~l-~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~  225 (432)
                      +++.....++.+..++++.+..+ ..+++.+.....+...++..+...+..+..+.+.++.
T Consensus       469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~  529 (1317)
T KOG0612|consen  469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK  529 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444322222 2233333333334444444444444444444444433

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.52  E-value=0.23  Score=54.67  Aligned_cols=91  Identities=15%  Similarity=0.231  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Q 014013          315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVK--  392 (432)
Q Consensus       315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k--  392 (432)
                      ..++..+.....++++++.++...+-+           ......++.....+.+..+.+++.+++....+..++....  
T Consensus       409 ~~~~t~~k~a~~k~e~~~~elk~~e~e-----------~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l  477 (1174)
T KOG0933|consen  409 SEASTEIKQAKLKLEHLRKELKLREGE-----------LATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEAL  477 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhH-----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence            334444555666666666665543322           2222334444444555555666666666665555544221  


Q ss_pred             ----HhhHHHHHHHHHHHHHHHHHHHHH
Q 014013          393 ----ESGAAKLQELASKAEEIVEKFQQY  416 (432)
Q Consensus       393 ----~~~e~ei~~~~~~~~~L~~~i~~Y  416 (432)
                          ...-.-+..+..++..|.+.+.+|
T Consensus       478 ~q~~~~l~~~~~~lk~~~~~l~a~~~~~  505 (1174)
T KOG0933|consen  478 KQRRAKLHEDIGRLKDELDRLLARLANY  505 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence                112233445555555555555444

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.52  E-value=0.23  Score=54.53  Aligned_cols=56  Identities=20%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 014013          165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN  220 (432)
Q Consensus       165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~  220 (432)
                      .....+...+..++.+|+.....+..+.+.++.+-+++..+...++..+..+..++
T Consensus       261 ~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i  316 (1200)
T KOG0964|consen  261 DKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQI  316 (1200)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh
Confidence            44455555555566666555555555555555555555444444444444333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.49  E-value=0.14  Score=51.66  Aligned_cols=13  Identities=0%  Similarity=0.059  Sum_probs=9.2

Q ss_pred             HHHHHHHHHcCCC
Q 014013           86 SMVKEVVTTVNCP   98 (432)
Q Consensus        86 ~~~~~~~~~~gv~   98 (432)
                      ..+..++..|+++
T Consensus        15 ~~~~~~~l~~~~~   27 (420)
T COG4942          15 TILLASLLSAAVL   27 (420)
T ss_pred             HHHHHHHHHhccc
Confidence            4566777778887

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.46  E-value=0.2  Score=52.42  Aligned_cols=48  Identities=15%  Similarity=0.171  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014013          376 AVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTL  423 (432)
Q Consensus       376 ~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~  423 (432)
                      ...+.|..|+.++.+-+..|+..+..-..++.+|......-+.+|...
T Consensus       321 ~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L  368 (546)
T KOG0977|consen  321 ALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKL  368 (546)
T ss_pred             hHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            456667777777777777777776666666666666666666555543

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.40  E-value=0.28  Score=52.71  Aligned_cols=32  Identities=25%  Similarity=0.216  Sum_probs=18.3

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          388 TKFVKESGAAKLQELASKAEEIVEKFQQYTNS  419 (432)
Q Consensus       388 ~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~  419 (432)
                      |.+.+++.+.+.+.+...-..+..+|..--+.
T Consensus       370 i~e~k~nve~elqsL~~l~aerqeQidelKn~  401 (1265)
T KOG0976|consen  370 IQEKKENVEEELQSLLELQAERQEQIDELKNH  401 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566666666666666665555555444333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.37  E-value=0.34  Score=53.20  Aligned_cols=57  Identities=12%  Similarity=0.264  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013          171 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI  227 (432)
Q Consensus       171 ~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i  227 (432)
                      .......+..+......+..++..+.....++..+++.+..++.....++.+|...+
T Consensus       109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L  165 (775)
T PF10174_consen  109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML  165 (775)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666677777777777777777777788888888888888888888765

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.34  E-value=0.55  Score=54.85  Aligned_cols=39  Identities=21%  Similarity=0.380  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 014013          316 SLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFE  354 (432)
Q Consensus       316 ~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~  354 (432)
                      .++.++..+..++..++.....+....+.+..++.....
T Consensus       820 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~  858 (1201)
T PF12128_consen  820 ELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELK  858 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444433333333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.013  Score=61.03  Aligned_cols=44  Identities=18%  Similarity=0.330  Sum_probs=37.5

Q ss_pred             CCCCCCCCHHHHHHHHhhcCcCCCChhhcCCCChhHHHHHHHHHH
Q 014013            3 KFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL   47 (432)
Q Consensus         3 ~~~fP~l~~~eIv~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l   47 (432)
                      .+|+--+++.||+.++.++|-|-+-+.|. .|-|++|.+|=..|=
T Consensus       269 ~~S~r~~~~~eVve~I~~lG~PvvVAtDV-tp~P~~V~KiAasf~  312 (652)
T COG2433         269 LESRRGIDRSEVVEFISELGKPVVVATDV-TPAPETVKKIAASFN  312 (652)
T ss_pred             eeccccCCHHHHHHHHHHcCCceEEEccC-CCChHHHHHHHHHcC
Confidence            36788899999999999999986666664 688999999988887

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.19  E-value=0.79  Score=53.58  Aligned_cols=13  Identities=31%  Similarity=0.411  Sum_probs=5.8

Q ss_pred             cccccCCCCCcch
Q 014013          103 LKDLIRPDATRTE  115 (432)
Q Consensus       103 ~~Dl~~P~~~R~~  115 (432)
                      +.-|-.|+.....
T Consensus       590 L~~I~~pd~~~~e  602 (1201)
T PF12128_consen  590 LSAIDVPDYAASE  602 (1201)
T ss_pred             hhhcCCchhhcCh
Confidence            3334356544444

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.12  E-value=0.27  Score=47.13  Aligned_cols=271  Identities=16%  Similarity=0.245  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014013          139 LEDKISQLNAEIAAYNEVREREL----PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV  214 (432)
Q Consensus       139 l~~~i~~l~~~i~~~~~k~~~~~----~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~  214 (432)
                      +.++|.-|+.+|+.++..-...+    ..++-+...|..|+..|+-   .-+.++..+..|..+.+.|+..-.-+.+.+.
T Consensus         4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKL---neE~ltkTi~qy~~QLn~L~aENt~L~SkLe   80 (305)
T PF14915_consen    4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKL---NEETLTKTIFQYNGQLNVLKAENTMLNSKLE   80 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Confidence            46677777777877766433222    2334444555555544431   1234455555555555555555555555555


Q ss_pred             HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 014013          215 QSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLK----KMSKQSAQMQAILEQV  290 (432)
Q Consensus       215 ~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~e~~~l~~~q~~~~~l~~~~k~~~----dv~~~~~~l~~~~~~~  290 (432)
                      .-++..++|.+.|..--.+|-+++.+.....+.-.+++..    ||.   .-+-...+-.    ||+.....-+-++..+
T Consensus        81 ~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlela----fqr---~rdEw~~lqdkmn~d~S~lkd~ne~LsQqL  153 (305)
T PF14915_consen   81 KEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELA----FQR---ARDEWVRLQDKMNSDVSNLKDNNEILSQQL  153 (305)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHH----HHH---HhhHHHHHHHHhcchHHhHHHHhHHHHHHH
Confidence            5566666666666666666666666654322111111111    111   1111111111    2222211111122222


Q ss_pred             H----HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHhHHHHHHHHHHHHHHhhHh
Q 014013          291 N----SAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ---LEKERNLKSEDATRAFENVKLEMESK  363 (432)
Q Consensus       291 ~----~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~---~~~~~~~~~~e~~~~~~~l~~e~~~~  363 (432)
                      .    +....+-.+-.+++.+.+...-+..+++-+.+.+-++..++.-...   +-...-.+.+.+..++.+|.++---+
T Consensus       154 skaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LL  233 (305)
T PF14915_consen  154 SKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLL  233 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1    2222333455557777777766778888888888888777766433   34456667778888899999999889


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----h-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          364 RQDLEARQKKVEAVVTEVDAITSKTKFVKES----G-------AAKLQELASKAEEIVEKFQQYTNS  419 (432)
Q Consensus       364 ~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~----~-------e~ei~~~~~~~~~L~~~i~~Y~~~  419 (432)
                      ++.++......+...+-|-.|.....+.-..    .       +..-+.+..+|.-|...+..|=.+
T Consensus       234 rQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE  300 (305)
T PF14915_consen  234 RQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKE  300 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            8888887777777777777666655333332    2       223345777888888888877554

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.04  E-value=0.59  Score=49.56  Aligned_cols=97  Identities=13%  Similarity=0.215  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH--cCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013           76 VRSVQIMKLYSMVKEVVTT--VNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY  153 (432)
Q Consensus        76 ~~s~~~l~~~~~~~~~~~~--~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~  153 (432)
                      +.++..++|...+..|...  ||+.  =++.|.--.+..+..    +++|.+-.+....+-=.-.++..+.+-...+.+-
T Consensus        38 ~~~~qk~n~~~~l~~~~~~~~~~~~--egl~~~~~ense~ms----~LySKL~~EaEKIk~WKv~vesd~~qKErkLqen  111 (786)
T PF05483_consen   38 DPALQKVNFLPMLEQVDNSDSCHYQ--EGLKDSDFENSEPMS----RLYSKLYKEAEKIKKWKVQVESDLKQKERKLQEN  111 (786)
T ss_pred             cHHHHHhcchhHHHHhccccchhhh--hccccccccccHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4556677887777777766  6543  334444334455566    6777776655555433333344444544444444


Q ss_pred             HHHHHhcchhHHHHHHHHHHHHHHH
Q 014013          154 NEVRERELPLVQEVDAKVKELRQTI  178 (432)
Q Consensus       154 ~~k~~~~~~~i~el~~e~~eLe~~L  178 (432)
                      +.-++.....|++|.=.|..|--+|
T Consensus       112 rk~IEaqrKaIqELQf~NE~lSlKL  136 (786)
T PF05483_consen  112 RKIIEAQRKAIQELQFENEKLSLKL  136 (786)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhHHH
Confidence            4444444445555555554444333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.03  E-value=0.65  Score=49.79  Aligned_cols=68  Identities=16%  Similarity=0.273  Sum_probs=45.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhhh
Q 014013          160 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEF----DLVQSVQQNADLRSKI  227 (432)
Q Consensus       160 ~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~----~l~~l~~e~~~L~~~i  227 (432)
                      ....+.....+...+...|.+|...-...+..+..++..-..+...+....+    .+..+.+..+.+.+..
T Consensus       110 ~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f  181 (569)
T PRK04778        110 IESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEF  181 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence            4556677777777888888888888888888888888888877777765533    3444444444444433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.02  E-value=0.62  Score=49.37  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=55.6

Q ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 014013          300 YKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVT  379 (432)
Q Consensus       300 ~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~  379 (432)
                      +..++.........+..|..++.....+++-+...-.    .....+.++...+.++..+.+....+....+.++.....
T Consensus       325 l~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~----~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~  400 (522)
T PF05701_consen  325 LERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE----KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKE  400 (522)
T ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333433333333445555555555554444433222    233345566666666666666665555555555555555


Q ss_pred             HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013          380 EVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG  421 (432)
Q Consensus       380 ~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~  421 (432)
                      ++......+..+    +..+..+..++......-..-+..|.
T Consensus       401 E~e~~ka~i~t~----E~rL~aa~ke~eaaKasEa~Ala~ik  438 (522)
T PF05701_consen  401 EAEQTKAAIKTA----EERLEAALKEAEAAKASEALALAEIK  438 (522)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555    34444444444444444444444443

Several sequences in this family are described as being myosin heavy chain-like.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=97.00  E-value=0.097  Score=45.85  Aligned_cols=137  Identities=21%  Similarity=0.301  Sum_probs=89.4

Q ss_pred             HHHHHHHHcCCCCCCCccccc---CCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 014013           87 MVKEVVTTVNCPMNFTLKDLI---RPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPL  163 (432)
Q Consensus        87 ~~~~~~~~~gv~~DFt~~Dl~---~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~  163 (432)
                      ++..-+...|++.+....|-.   .-+..++.    +.+..++....+-.+.+..+.+.+..+...++.+....+.....
T Consensus         6 yiN~~L~s~G~~~~~~~~~~~~~~~~~~~~vi----n~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~   81 (151)
T PF11559_consen    6 YINQQLLSRGYPSDGLLFDSAEESEDNDVRVI----NCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQ   81 (151)
T ss_pred             HHHHHHHHCCCCCCCccCcccccccccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            455666677877333333322   22233455    77777777777777778888888888888887777777776677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhh
Q 014013          164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT----EFDLVQSVQQNADLRSKI  227 (432)
Q Consensus       164 i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~----~~~l~~l~~e~~~L~~~i  227 (432)
                      +.++..++...+.....+......+.......+.+...+...+...    .-++-.-..|+++|+.++
T Consensus        82 ~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen   82 LEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777777777777777777777666666666666666555433    444555556666666554

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.99  E-value=0.91  Score=50.78  Aligned_cols=74  Identities=22%  Similarity=0.339  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 014013          316 SLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE  393 (432)
Q Consensus       316 ~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~  393 (432)
                      .++.++.+...++..|..+.+..+.    -...++.+++.+++++.....++...+..+..+.+.+..+...|..++.
T Consensus       391 ~~~~~~~e~e~k~~~L~~evek~e~----~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~  464 (1074)
T KOG0250|consen  391 ELGSELEERENKLEQLKKEVEKLEE----QINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK  464 (1074)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444444444433222    1122223333333333333334433334444444444444444444433

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.98  E-value=0.78  Score=50.01  Aligned_cols=41  Identities=7%  Similarity=0.248  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014013          167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS  207 (432)
Q Consensus       167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~  207 (432)
                      +..+..+++.++..+......+..+...++.+...+..++.
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~  247 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE  247 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444433333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.84  E-value=1  Score=49.20  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          314 DKSLEAKLIERQGKVEQLDELQQQ  337 (432)
Q Consensus       314 ~~~l~~ql~~~~~k~~~l~~~~~~  337 (432)
                      ...|-..|.-+|.|-.+|+..+.+
T Consensus       589 ~e~L~~aL~amqdk~~~LE~sLsa  612 (697)
T PF09726_consen  589 TEVLMSALSAMQDKNQHLENSLSA  612 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhH
Confidence            456777778888888888887765

; GO: 0016021 integral to membrane

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.79  E-value=0.26  Score=42.84  Aligned_cols=111  Identities=22%  Similarity=0.242  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHH
Q 014013          144 SQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDL---VQSVQQN  220 (432)
Q Consensus       144 ~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l---~~l~~e~  220 (432)
                      ..|+.+.+....+.......+.++..++..++.+|..|......+..+++.+......+...++......   ..+...+
T Consensus         3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri   82 (143)
T PF12718_consen    3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI   82 (143)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
Confidence            3444555555555555566667777777777777777777777777777777777777777777665433   3456666


Q ss_pred             HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          221 ADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKL  254 (432)
Q Consensus       221 ~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~e~~  254 (432)
                      .-|...+..+..+|+...+.+...=.....++|.
T Consensus        83 q~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk  116 (143)
T PF12718_consen   83 QLLEEELEEAEKKLKETTEKLREADVKAEHFERK  116 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            6666666666666666665554432223334443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.69  E-value=0.56  Score=44.10  Aligned_cols=63  Identities=11%  Similarity=0.230  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Q 014013          347 EDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEI  409 (432)
Q Consensus       347 ~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L  409 (432)
                      ..++.+...|..+...+..+++..+..+......+..++..+...+..++.++..+..+-..+
T Consensus        99 ~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~  161 (239)
T COG1579          99 QIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQEL  161 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444444444444444444444444433333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.68  E-value=0.00043  Score=75.93  Aligned_cols=70  Identities=9%  Similarity=0.136  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014013          345 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ  414 (432)
Q Consensus       345 ~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~  414 (432)
                      .++.++..+..|.........+.......+......|..+|.+....+...+.|.+-|...|-.+.-.++
T Consensus       602 ~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k~~~~~EekLi~sa~y~~g~~~~  671 (713)
T PF05622_consen  602 YLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKELEKSKQMREQEEKLIVSAWYNLGMRLH  671 (713)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333322233333344455556667777777777777777777777777776655554

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.65  E-value=1.2  Score=47.52  Aligned_cols=114  Identities=17%  Similarity=0.195  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014013          314 DKSLEAKLIERQGKVEQLDELQQQLE---KERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF  390 (432)
Q Consensus       314 ~~~l~~ql~~~~~k~~~l~~~~~~~~---~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~  390 (432)
                      .+.++.++..+..+...+...+....   ......+.++...+.++..++..+...+...+..=...+..+..+...+..
T Consensus       346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~  425 (560)
T PF06160_consen  346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE  425 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666655555442   244445555566666666666666666666555555556666666666666


Q ss_pred             HHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 014013          391 VKESGAAK-LQELASKAEEIVEKFQQYTNSIGTLLPVT  427 (432)
Q Consensus       391 ~k~~~e~e-i~~~~~~~~~L~~~i~~Y~~~m~~~~~~~  427 (432)
                      ++...++- +=.+=..|......+..++..+...|+.+
T Consensus       426 ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~  463 (560)
T PF06160_consen  426 IKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQV  463 (560)
T ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            65443311 00112445555555555555555555443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.56  E-value=2  Score=48.78  Aligned_cols=40  Identities=15%  Similarity=0.250  Sum_probs=22.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          118 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE  158 (432)
Q Consensus       118 ~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~  158 (432)
                      +-.++..|.+ +..|..-...+-+.+..++..++.+.....
T Consensus       156 r~~il~~l~~-l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~  195 (908)
T COG0419         156 RKEILDELFG-LEKYEKLSELLKEVIKEAKAKIEELEGQLS  195 (908)
T ss_pred             HHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3367777776 666555555555555555555555554444

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.53  E-value=1.5  Score=46.98  Aligned_cols=73  Identities=10%  Similarity=0.186  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014013          314 DKSLEAKLIERQGKVEQLDELQQQLEKE---RNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF  390 (432)
Q Consensus       314 ~~~l~~ql~~~~~k~~~l~~~~~~~~~~---~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~  390 (432)
                      .+.||..++.+..++.+--.-++.+-=.   ...-...+-+.+..+.+.+..+....+..+.    +..+|..++.+|..
T Consensus       514 Tr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~----~~rEirdLe~qI~~  589 (594)
T PF05667_consen  514 TRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGT----ISREIRDLEEQIDT  589 (594)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHH
Confidence            5667777777777776654444443111   2222333444567777777777666554332    34445544444443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.51  E-value=1.8  Score=47.81  Aligned_cols=92  Identities=21%  Similarity=0.319  Sum_probs=52.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT  199 (432)
Q Consensus       120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~  199 (432)
                      +.+..+++++.++.+.+...-.+-.++..+++       .....+..+..+..+|+..|..|+....++.++..+.-+++
T Consensus       230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~-------~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~k  302 (1200)
T KOG0964|consen  230 RELNEINGELERLEEDRSSAPEESEQYIDALD-------KVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKK  302 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhhhhHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55556666566665555544333222222222       12334455666667777777777776666666666666666


Q ss_pred             HHHHHHhhhhHHHHHHHHH
Q 014013          200 GALDEKFSQTEFDLVQSVQ  218 (432)
Q Consensus       200 ~el~~~l~~~~~~l~~l~~  218 (432)
                      ..+.-++.++..++..-.+
T Consensus       303 t~lel~~kdlq~~i~~n~q  321 (1200)
T KOG0964|consen  303 TKLELKIKDLQDQITGNEQ  321 (1200)
T ss_pred             hhhhhhhHHHHHHhhhhhh
Confidence            6666666666666554433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.49  E-value=1.8  Score=47.42  Aligned_cols=61  Identities=10%  Similarity=0.220  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013          167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI  227 (432)
Q Consensus       167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i  227 (432)
                      +.+....|+.+|..-+..-.....-.++++.+..++.+-++=+.....-++...+.|+-.+
T Consensus       274 im~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~ev  334 (1243)
T KOG0971|consen  274 IMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEV  334 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3334445555555555555555555556666666666655544333333333333344333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.47  E-value=2.9  Score=49.56  Aligned_cols=62  Identities=13%  Similarity=0.105  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 014013          314 DKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVE  375 (432)
Q Consensus       314 ~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie  375 (432)
                      ...++.++.....++..+...+.....+...++++++..++.+..++....++.......+.
T Consensus       898 ~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~  959 (1353)
T TIGR02680       898 AAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARG  959 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666666666655444455555555555555555555554444444333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.45  E-value=1.8  Score=46.86  Aligned_cols=10  Identities=10%  Similarity=0.295  Sum_probs=3.9

Q ss_pred             HHHHHHHHHH
Q 014013          407 EEIVEKFQQY  416 (432)
Q Consensus       407 ~~L~~~i~~Y  416 (432)
                      ..+.+||-.|
T Consensus       396 delKn~if~~  405 (1265)
T KOG0976|consen  396 DELKNHIFRL  405 (1265)
T ss_pred             HHHHHhhhhh
Confidence            3344444333

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=96.32  E-value=0.35  Score=44.55  Aligned_cols=104  Identities=15%  Similarity=0.194  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT  199 (432)
Q Consensus       120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~  199 (432)
                      =+|+=++.++-.+-.+.-.+++. .....+...++...+....    +.+++..+.+++..+.....+...+++......
T Consensus       107 LFL~lvI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~  181 (216)
T KOG1962|consen  107 LFLSLVIRRLHTLLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKV  181 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666555554443333332 2222233333332222111    778888889999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014013          200 GALDEKFSQTEFDLVQSVQQNADLRSKIV  228 (432)
Q Consensus       200 ~el~~~l~~~~~~l~~l~~e~~~L~~~iv  228 (432)
                      ..+..+.+.+..+..++-.+..+|+.+|.
T Consensus       182 ~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  182 DALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998875

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.31  E-value=2.4  Score=47.01  Aligned_cols=67  Identities=18%  Similarity=0.218  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 014013          169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF--SQTEFDLVQSVQQNADLRSKIVQSPEKLQ  235 (432)
Q Consensus       169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l--~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk  235 (432)
                      .+..-++.++.+|++.-..|-++..-++++...+..+=  .+++.++..+++.+..|+..--+.-.++-
T Consensus       257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kte  325 (1195)
T KOG4643|consen  257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTE  325 (1195)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            33444566666666666666666666666666666555  45566677777777777666555444433

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.17  E-value=1.8  Score=44.03  Aligned_cols=73  Identities=18%  Similarity=0.309  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHH
Q 014013          162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL  234 (432)
Q Consensus       162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~L  234 (432)
                      .++.+...++..++.+|..-.+.+..|...+..++.+...+...|.+....+..+++.|+.+...+...+..-
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4456677777777888888888888888888888888888888888888888888888877777776666554

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=96.16  E-value=1.1  Score=41.43  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 014013          316 SLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM  360 (432)
Q Consensus       316 ~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~  360 (432)
                      .|...+.....++..++.+..++...+..+++.+...++.++..+
T Consensus       115 ~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~  159 (207)
T PF05010_consen  115 TLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKH  159 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344445556666666666666666666666666666666665555

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.12  E-value=2.4  Score=45.16  Aligned_cols=50  Identities=16%  Similarity=0.256  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013          372 KKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG  421 (432)
Q Consensus       372 ~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~  421 (432)
                      ...+.+......-+.++..+-...+++|+.+...+..+...=..|...+.
T Consensus       425 k~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVe  474 (786)
T PF05483_consen  425 KQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVE  474 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            33555555566666666677777777777777777776666666655443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.09  E-value=1.3  Score=41.74  Aligned_cols=39  Identities=28%  Similarity=0.308  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 014013          371 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEK  412 (432)
Q Consensus       371 ~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~  412 (432)
                      +..+..+..+...+.++...++....   ..+...|+++..+
T Consensus       148 e~e~~~i~e~~~~~~~~~~~L~~~l~---~ell~~yeri~~~  186 (239)
T COG1579         148 EEEVAEIREEGQELSSKREELKEKLD---PELLSEYERIRKN  186 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHhc
Confidence            33444555556666666667766666   5566677777655

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.01  E-value=1.5  Score=41.82  Aligned_cols=63  Identities=17%  Similarity=0.350  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 014013          179 QDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK  241 (432)
Q Consensus       179 ~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el  241 (432)
                      ..+......|-..+..+..+..++..++.+....+..++++|+.|+..|+.=-+.|+.....|
T Consensus        48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm  110 (265)
T COG3883          48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM  110 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444444444444444455555555556666666665555555555444444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.98  E-value=1.9  Score=42.79  Aligned_cols=12  Identities=0%  Similarity=0.136  Sum_probs=10.3

Q ss_pred             HHHHHHHHcCCC
Q 014013           87 MVKEVVTTVNCP   98 (432)
Q Consensus        87 ~~~~~~~~~gv~   98 (432)
                      +++.||..+||.
T Consensus        15 sL~~FL~~~~I~   26 (325)
T PF08317_consen   15 SLQDFLNMTGIR   26 (325)
T ss_pred             CHHHHHHHhCce
Confidence            478999999997

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.95  E-value=0.95  Score=39.03  Aligned_cols=80  Identities=21%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013          127 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  206 (432)
Q Consensus       127 n~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l  206 (432)
                      +++-+-+.+...+.+.+..|+.+++.............+...+.+..|+.++..+......+..++..+..++..+...+
T Consensus        10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l   89 (140)
T PF10473_consen   10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL   89 (140)
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444455555555555444443333222222333334444444444444444444444444444444443333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.91  E-value=3.5  Score=45.29  Aligned_cols=103  Identities=16%  Similarity=0.190  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHhhH--
Q 014013          326 GKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQK-------KVEAVVTEVDAITSKTKFVKESGA--  396 (432)
Q Consensus       326 ~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~-------~ie~~~~~i~~ie~~~~~~k~~~e--  396 (432)
                      ..++.+++-.+++.+.+.+-.-+++..++.++.-+.++.+.++..+.       -|-.++..+..+..++.++++.-.  
T Consensus       472 ~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ss  551 (1243)
T KOG0971|consen  472 GDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESS  551 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            33445555566666666666666777777666666555555544322       233445566666666666554222  


Q ss_pred             -HHH------HHHHHHHHHHHHHHHHHHHHHhccccccc
Q 014013          397 -AKL------QELASKAEEIVEKFQQYTNSIGTLLPVTE  428 (432)
Q Consensus       397 -~ei------~~~~~~~~~L~~~i~~Y~~~m~~~~~~~~  428 (432)
                       .+.      +-...-|-...+.-+.|-.-+..-+..+|
T Consensus       552 eees~q~~s~~~et~dyk~~fa~skayaraie~QlrqiE  590 (1243)
T KOG0971|consen  552 EEESQQPPSVDPETFDYKIKFAESKAYARAIEMQLRQIE  590 (1243)
T ss_pred             HHHhcCCCCCchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence             111      11223345555555555555554444443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=95.87  E-value=3  Score=44.21  Aligned_cols=21  Identities=5%  Similarity=0.039  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 014013          138 ELEDKISQLNAEIAAYNEVRE  158 (432)
Q Consensus       138 ~l~~~i~~l~~~i~~~~~k~~  158 (432)
                      .+..++..-+.-+++++.+++
T Consensus        59 ~~l~ELe~akr~veel~~kLe   79 (522)
T PF05701_consen   59 QALSELESAKRTVEELKLKLE   79 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555566555443

Several sequences in this family are described as being myosin heavy chain-like.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.87  E-value=2.4  Score=43.15  Aligned_cols=129  Identities=16%  Similarity=0.238  Sum_probs=61.7

Q ss_pred             CCCCCCCHHHHHHHHhhcCcC---CCChhhcCCCChh---HHHHHHHHHH-HHhccCCCCchhhhcHHHhhcCCCchhHH
Q 014013            4 FDYPRLSATEIVTILTETEIA---VITENDLKNPNPD---FVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHV   76 (432)
Q Consensus         4 ~~fP~l~~~eIv~~L~~~~~~---~~t~~dl~kPt~~---~v~~ly~~~l-~~~~~~~~~~~~~~~~~~~~~~~~pe~~~   76 (432)
                      |.|.--=..|+++||..+..|   .++...|.--+|.   .+-+.+-|.+ .+-..  +-+.+ +.- .+..-+--|+..
T Consensus       154 f~F~~r~E~eV~~~lKnL~YPfl~sI~kSqlsAI~ph~Wp~iLgMlhW~V~li~~~--~~~~~-~~~-tl~qq~~~e~~V  229 (622)
T COG5185         154 FGFTKRIENEVYQILKNLRYPFLESINKSQLSAIGPHNWPKILGMLHWMVRLIIKL--DMCLQ-PLK-TLDQQDRYELMV  229 (622)
T ss_pred             CCcchhhHHHHHHHHHhcCCchhhhhhHhHhhccCCcchHHHHHHHHHHHHHHHHH--HHHHh-hhc-hHhhccHHHHHH
Confidence            444444468999999998775   5677777655554   3444455555 21110  00000 000 011000112334


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013           77 RSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQ  145 (432)
Q Consensus        77 ~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~  145 (432)
                      +..-+=.|...-..||.  |-+ |.      .|.-+-+.-.+-.+...|-+.++++..+...+++.+..
T Consensus       230 ek~lfdY~~~~Y~~fl~--~~~-~~------~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~e  289 (622)
T COG5185         230 EKLLFDYFTESYKSFLK--LED-NY------EPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQE  289 (622)
T ss_pred             HHHHHHHHHHHHHHHhc--CCC-cc------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444454455554  223 22      23322111111145556667777777777766655443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.81  E-value=4.3  Score=45.50  Aligned_cols=34  Identities=15%  Similarity=0.042  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 014013          396 AAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEI  429 (432)
Q Consensus       396 e~ei~~~~~~~~~L~~~i~~Y~~~m~~~~~~~~~  429 (432)
                      -.+.+.+...|....+....|..++...+.++..
T Consensus       443 ~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~d  476 (1141)
T KOG0018|consen  443 KHDLDSLESLVSSAEEEPYELNEELVEVLDQLLD  476 (1141)
T ss_pred             hhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence            3455677777777777777777777766655543

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=95.73  E-value=4.5  Score=45.07  Aligned_cols=15  Identities=7%  Similarity=0.195  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHH
Q 014013          398 KLQELASKAEEIVEK  412 (432)
Q Consensus       398 ei~~~~~~~~~L~~~  412 (432)
                      +.+..-+.+..|.-|
T Consensus       579 elkk~idaL~alrrh  593 (1195)
T KOG4643|consen  579 ELKKYIDALNALRRH  593 (1195)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444433333

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.68  E-value=2.8  Score=42.49  Aligned_cols=89  Identities=13%  Similarity=0.151  Sum_probs=56.4

Q ss_pred             HHHHHHhhcCcCCCCh-hhcCCCChhHHHHHHHHHHHHhccCCCCchhhhcHHHhhcCCCchhHHHHHH-HHHHHHHHHH
Q 014013           13 EIVTILTETEIAVITE-NDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQ-IMKLYSMVKE   90 (432)
Q Consensus        13 eIv~~L~~~~~~~~t~-~dl~kPt~~~v~~ly~~~l~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~s~~-~l~~~~~~~~   90 (432)
                      =|...|...|. +|.+ +++.-=||+.|..+..+||...+-+.....           . | ++.++++ -+++...+..
T Consensus         7 iimh~lrq~g~-sipp~~~lseFTteqvveavvrcL~~Idps~q~~~-----------s-~-llp~am~~Rfrla~siAq   72 (521)
T KOG1937|consen    7 IIMHALRQLGC-SIPPFEDLSEFTTEQVVEAVVRCLWKIDPSKQTIS-----------S-Y-LLPKAMTTRFRLANSIAQ   72 (521)
T ss_pred             HHHHHHHHcCC-CCCCchhHhhcCHHHHHHHHHHHHHhcCccccccc-----------c-c-cCchHHHHHHHHHHHHHH
Confidence            47778888888 4666 899999999999999999955441101000           0 0 1122222 1334444445


Q ss_pred             HHHHcCCCCCCCcccccCCCCCcch
Q 014013           91 VVTTVNCPMNFTLKDLIRPDATRTE  115 (432)
Q Consensus        91 ~~~~~gv~~DFt~~Dl~~P~~~R~~  115 (432)
                      -..+.|++.|.++.-.+.|...=+|
T Consensus        73 ~ckdlgyrgD~gyqtfLypn~~dlR   97 (521)
T KOG1937|consen   73 YCKDLGYRGDTGYQTFLYPNINDLR   97 (521)
T ss_pred             HHHHcCCCcccchhheecCCcccHH
Confidence            5556688778888888888877666

>PRK09039 hypothetical protein; Validated

Probab=95.67  E-value=1.2  Score=44.66  Aligned_cols=81  Identities=12%  Similarity=0.184  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014013          315 KSLEAKLIERQGKVEQLDELQQQLEK---ERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV  391 (432)
Q Consensus       315 ~~l~~ql~~~~~k~~~l~~~~~~~~~---~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~  391 (432)
                      ..++.++...+....+|+.....+..   ....+...+...+.+++..|.+..++....+.+|+.++.++..++..++..
T Consensus        84 ~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a  163 (343)
T PRK09039         84 ANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS  163 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444333322   445566666677777777777777777777777777777777777777666


Q ss_pred             HHhh
Q 014013          392 KESG  395 (432)
Q Consensus       392 k~~~  395 (432)
                      +...
T Consensus       164 e~~~  167 (343)
T PRK09039        164 EKRD  167 (343)
T ss_pred             HHHH
Confidence            5543

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=95.50  E-value=2.4  Score=40.34  Aligned_cols=40  Identities=23%  Similarity=0.300  Sum_probs=34.6

Q ss_pred             HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014013          386 SKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLP  425 (432)
Q Consensus       386 ~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~~~  425 (432)
                      .+++.++.+...|.++=......++..++.|+..|-..|.
T Consensus       204 ~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~~L~  243 (247)
T PF06705_consen  204 EEIAALKNALALESQEREQSDDDIVQALNHYTKALQDGLR  243 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            4555899999999999999999999999999998876654

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.49  E-value=5.5  Score=44.45  Aligned_cols=76  Identities=16%  Similarity=0.193  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 014013          163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK  241 (432)
Q Consensus       163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el  241 (432)
                      .++++..+..+++++|.+....+..-...+..+.....+..   .+-+..+..+..++..++.++..|...+++...+-
T Consensus       742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~---~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~  817 (1174)
T KOG0933|consen  742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAK---ANRERRLKDLEKEIKTAKQRAEESSKELEKRENEY  817 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555556555555555544444433333322221   22244445555555555555555555555444443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.47  E-value=5  Score=43.95  Aligned_cols=42  Identities=12%  Similarity=0.248  Sum_probs=26.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          160 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA  201 (432)
Q Consensus       160 ~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~e  201 (432)
                      ....+.++..+|+.|+.++..|.+....=......+..+..+
T Consensus       458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e  499 (697)
T PF09726_consen  458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE  499 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344677888888888888888877555444443333333333

; GO: 0016021 integral to membrane

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=95.45  E-value=2.2  Score=40.92  Aligned_cols=31  Identities=16%  Similarity=0.347  Sum_probs=27.1

Q ss_pred             hcCcC-CCChhhcCCCChhHHHHHHHHHHHHh
Q 014013           20 ETEIA-VITENDLKNPNPDFVSDLYTRLLIFL   50 (432)
Q Consensus        20 ~~~~~-~~t~~dl~kPt~~~v~~ly~~~l~~~   50 (432)
                      .+|+| .|+.+.+..|+-+.|-.|..|++.-+
T Consensus         2 ~LGypr~iSmenFrtPNF~LVAeiL~WLv~ry   33 (267)
T PF10234_consen    2 ALGYPRLISMENFRTPNFELVAEILRWLVKRY   33 (267)
T ss_pred             CCCCCCCCcHHHcCCCChHHHHHHHHHHHHHc
Confidence            46776 68999999999999999999999555

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.44  E-value=1.6  Score=37.93  Aligned_cols=23  Identities=30%  Similarity=0.297  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 014013          314 DKSLEAKLIERQGKVEQLDELQQ  336 (432)
Q Consensus       314 ~~~l~~ql~~~~~k~~~l~~~~~  336 (432)
                      +..|..+...|..++..+..++.
T Consensus       117 v~~le~~~~~~E~k~eel~~k~~  139 (143)
T PF12718_consen  117 VKALEQERDQWEEKYEELEEKYK  139 (143)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHH
Confidence            35555555555555555544443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.42  E-value=6.2  Score=44.65  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 014013          164 VQEVDAKVKELRQTIQDLNKHQV  186 (432)
Q Consensus       164 i~el~~e~~eLe~~L~~l~~~q~  186 (432)
                      ..+.++.|++|+.-+..++.-+.
T Consensus      1463 ~~q~~~s~~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1463 RSQMEESNRELRNLIQQVRDFLT 1485 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            35555666666666666655443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.36  E-value=8.5  Score=45.88  Aligned_cols=31  Identities=19%  Similarity=0.213  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          123 RPIAEDLTRLDEQRSELEDKISQLNAEIAAY  153 (432)
Q Consensus       123 s~iin~~~~f~eer~~l~~~i~~l~~~i~~~  153 (432)
                      ...-..+.++.....++...+..|+.+....
T Consensus       303 e~tE~nL~rI~diL~ELe~rL~kLEkQaEkA  333 (1486)
T PRK04863        303 AAEQYRLVEMARELAELNEAESDLEQDYQAA  333 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444433

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=95.29  E-value=3  Score=40.22  Aligned_cols=168  Identities=18%  Similarity=0.212  Sum_probs=100.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHhhhhcCHH
Q 014013          160 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS-------QTEFDLVQSVQQNADLRSKIVQSPE  232 (432)
Q Consensus       160 ~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~-------~~~~~l~~l~~e~~~L~~~iv~SPe  232 (432)
                      ....+.-|.++|.-|.++|..=+.....+..+++.+..+.+......+       +++..+.+.+.|.-.|+..+..+..
T Consensus        61 y~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S  140 (305)
T PF14915_consen   61 YNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVS  140 (305)
T ss_pred             HhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHH
Confidence            344667888899999999988888888999999999888877776554       4567777888888888888888877


Q ss_pred             HHHHHHHHHHHHHHHH----HHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          233 KLQRTLEEKKSIREEA----RDAEKL---AMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKA  305 (432)
Q Consensus       233 ~Lk~~i~el~~~l~~l----~~~e~~---~l~~~q~~~~~l~~~~k~~~dv~~~~~~l~~~~~~~~~~ke~e~~~~~~k~  305 (432)
                      .|+...+=|+..|+..    ..++-.   .-++++.++-.++.+.+   |+...-..          .+++++-...-++
T Consensus       141 ~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~Qr---dL~Qtq~q----------~KE~e~m~qne~~  207 (305)
T PF14915_consen  141 NLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQR---DLSQTQCQ----------IKEIEHMYQNEQD  207 (305)
T ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----------HHHHHHHHHhHHH
Confidence            7776666666655321    111110   01234444444443333   33333222          2333333333344


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          306 RLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEK  340 (432)
Q Consensus       306 ~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~  340 (432)
                      +++.....-..++.+|.+++..--=|+.+++.-..
T Consensus       208 kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~  242 (305)
T PF14915_consen  208 KVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHN  242 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433333355666666666666666666555433

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.26  E-value=6.5  Score=43.92  Aligned_cols=65  Identities=17%  Similarity=0.287  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          140 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE  204 (432)
Q Consensus       140 ~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~  204 (432)
                      ++.+..+.++++.....+...+..++....++......+..+++....+...+..++.+...+..
T Consensus       635 ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~  699 (1072)
T KOG0979|consen  635 EEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIEN  699 (1072)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34444455555554444444444445555555555666666666666666666566555544443

>PRK09039 hypothetical protein; Validated

Probab=95.26  E-value=3.7  Score=41.09  Aligned_cols=46  Identities=13%  Similarity=0.081  Sum_probs=20.9

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 014013          351 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA  396 (432)
Q Consensus       351 ~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e  396 (432)
                      ..+..|+.+++.+...++..+..++..+.+......+|.++....+
T Consensus       137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~  182 (343)
T PRK09039        137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN  182 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444544555555543333

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=95.22  E-value=2.2  Score=38.90  Aligned_cols=130  Identities=21%  Similarity=0.275  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--
Q 014013           77 RSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDE---QRSELEDKISQLNAEIA--  151 (432)
Q Consensus        77 ~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~e---er~~l~~~i~~l~~~i~--  151 (432)
                      -++|++.-|..+-.-+..++++ |..                 ..|....+-+..|..   .-..+..++..|-.--+  
T Consensus        44 ~A~Glm~~f~~l~e~v~~l~id-d~~-----------------~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~  105 (190)
T PF05266_consen   44 MAVGLMVTFANLAEKVKKLQID-DSR-----------------SSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQ  105 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHcccC-CcH-----------------HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhH
Confidence            4677888888888888888888 531                 333333333333332   11122333333221111  


Q ss_pred             -HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013          152 -AYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  224 (432)
Q Consensus       152 -~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~  224 (432)
                       .+...+...+..+.+...+..+++..+.++......+......++..+......|..+......+++++.+.+
T Consensus       106 ~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e  179 (190)
T PF05266_consen  106 EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE  179 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1111111222223333344455555555555555555555555555554444444444444444444444433

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=95.21  E-value=7.9  Score=44.68  Aligned_cols=38  Identities=24%  Similarity=0.240  Sum_probs=19.9

Q ss_pred             HhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 014013          205 KFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK  242 (432)
Q Consensus       205 ~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~  242 (432)
                      ++.+++..+..+..++..+.+.+..+-+++.+...++.
T Consensus       879 ~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~  916 (1294)
T KOG0962|consen  879 RLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELE  916 (1294)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHH
Confidence            33344555555555555555555555555554444443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=95.20  E-value=0.0052  Score=68.62  Aligned_cols=92  Identities=18%  Similarity=0.384  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014013          135 QRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV  214 (432)
Q Consensus       135 er~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~  214 (432)
                      .+..+...++.+...++.+...+...+..+..++..+.++..++.+..+....+......+..++.++...+++....+.
T Consensus       153 ~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~  232 (859)
T PF01576_consen  153 EKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLS  232 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666666666555555555555666666677777777777777777777777777777777777777766666


Q ss_pred             HHHHHHHHHHhh
Q 014013          215 QSVQQNADLRSK  226 (432)
Q Consensus       215 ~l~~e~~~L~~~  226 (432)
                      .+......|.++
T Consensus       233 ~l~r~k~~L~~q  244 (859)
T PF01576_consen  233 QLQREKSSLESQ  244 (859)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHH
Confidence            665544444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.20  E-value=4.9  Score=42.21  Aligned_cols=23  Identities=4%  Similarity=0.083  Sum_probs=14.0

Q ss_pred             ccCCCCCcchhHhhhhHHHHHHHHHHH
Q 014013          106 LIRPDATRTEDTKMNLLRPIAEDLTRL  132 (432)
Q Consensus       106 l~~P~~~R~~~~~~~~ls~iin~~~~f  132 (432)
                      ...|+|....    .+..+++..|...
T Consensus       128 ~~~~dP~~Aa----~i~n~l~~~yi~~  150 (498)
T TIGR03007       128 YEDKDPELAK----DVVQTLLTIFVEE  150 (498)
T ss_pred             eeCCCHHHHH----HHHHHHHHHHHHh
Confidence            3457776666    6666666655444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.05  E-value=6.2  Score=42.59  Aligned_cols=35  Identities=11%  Similarity=0.312  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          124 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE  158 (432)
Q Consensus       124 ~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~  158 (432)
                      .+..+...+.+++......+..|...+.+++....
T Consensus        33 qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~   67 (617)
T PF15070_consen   33 QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA   67 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            44444556677777777777777777777766554

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.03  E-value=5.7  Score=42.05  Aligned_cols=67  Identities=16%  Similarity=0.205  Sum_probs=29.1

Q ss_pred             CCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 014013          108 RPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTI  178 (432)
Q Consensus       108 ~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L  178 (432)
                      -|+|.-..    .-...+.+....-..++..+...+..++.++.+.+.+.....+..+.+......+...+
T Consensus        99 aPDP~pll----~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~i  165 (629)
T KOG0963|consen   99 APDPVPLL----ASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFI  165 (629)
T ss_pred             CCCCchHH----HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Confidence            57775544    33333333232223344444445555555555555444433333333333333333333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.01  E-value=2.8  Score=38.36  Aligned_cols=126  Identities=22%  Similarity=0.317  Sum_probs=89.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT  199 (432)
Q Consensus       120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~  199 (432)
                      +++|+=.-++..+..+-.++..++.++..+..-++.-.......+...+....+|-.-|...+.....+...+..++...
T Consensus         5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~   84 (194)
T PF15619_consen    5 RVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQE   84 (194)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666555566666666666666666666666665555555556667777777777778888888888888888888888


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhhhh----cCHHHHHHHHHHHHHHH
Q 014013          200 GALDEKFSQTEFDLVQSVQQNADLRSKIV----QSPEKLQRTLEEKKSIR  245 (432)
Q Consensus       200 ~el~~~l~~~~~~l~~l~~e~~~L~~~iv----~SPe~Lk~~i~el~~~l  245 (432)
                      ..+..++.+....+..+..++..|+..+.    ..-++|.+.++.+...+
T Consensus        85 r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l  134 (194)
T PF15619_consen   85 RELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKL  134 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Confidence            88888888888888888888888877543    33466666666655544

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.98  E-value=6.9  Score=42.74  Aligned_cols=13  Identities=8%  Similarity=0.112  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHh
Q 014013          409 IVEKFQQYTNSIG  421 (432)
Q Consensus       409 L~~~i~~Y~~~m~  421 (432)
                      |...+..+...|.
T Consensus       507 le~~~~~~f~~l~  519 (650)
T TIGR03185       507 LEEEITKSFKKLM  519 (650)
T ss_pred             HHHHHHHHHHHHh
Confidence            4444455555553

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.95  E-value=2.2  Score=36.84  Aligned_cols=64  Identities=14%  Similarity=0.228  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013          163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK  226 (432)
Q Consensus       163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~  226 (432)
                      .|..++++....+.....+...-+.-.+....++.+...+...+..+...+..+..+...|...
T Consensus        25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~   88 (140)
T PF10473_consen   25 HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE   88 (140)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444555555555555555556666666666666666555433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR00634 recN DNA repair protein RecN

Probab=94.90  E-value=6.6  Score=42.10  Aligned_cols=51  Identities=12%  Similarity=0.177  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 014013          314 DKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQK  372 (432)
Q Consensus       314 ~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~  372 (432)
                      +..+-.....++.++..+...-.        ..+++..++..++.++......+...++
T Consensus       324 ~e~l~~~~~~l~~eL~~l~~~~~--------~le~L~~el~~l~~~l~~~a~~Ls~~R~  374 (563)
T TIGR00634       324 VEEVLEYAEKIKEELDQLDDSDE--------SLEALEEEVDKLEEELDKAAVALSLIRR  374 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555544433222        3444555566666666655555554433

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=94.90  E-value=3.8  Score=39.33  Aligned_cols=82  Identities=18%  Similarity=0.290  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHH
Q 014013          169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS-KIVQSPEKLQRTLEEKKSIREE  247 (432)
Q Consensus       169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~-~iv~SPe~Lk~~i~el~~~l~~  247 (432)
                      .+...|..+.......-..+.........+...+...+..+...+..+-.+...+.. --..++..|.+.+.+-...+.+
T Consensus        59 ~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~e  138 (264)
T PF06008_consen   59 QDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEE  138 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHH
Confidence            333333333333333333444444444455555555555555555555555555554 3356778888888887777755


Q ss_pred             HHH
Q 014013          248 ARD  250 (432)
Q Consensus       248 l~~  250 (432)
                      +..
T Consensus       139 mr~  141 (264)
T PF06008_consen  139 MRK  141 (264)
T ss_pred             HHh
Confidence            543

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.78  E-value=2  Score=40.36  Aligned_cols=108  Identities=16%  Similarity=0.232  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 014013          316 SLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG  395 (432)
Q Consensus       316 ~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~  395 (432)
                      .+..+...+.+-..++...++....+. ..+.+.+..++.|..|+..-..++.....+|..++..|+..+.+....    
T Consensus         5 ~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~----   79 (230)
T PF10146_consen    5 EIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKR----   79 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            344455555555556655555555555 477778888888888888888888777777777777777666555554    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccccccc
Q 014013          396 AAKLQELASKAEEIVEKFQQYTNS-IG-TLLPVTE  428 (432)
Q Consensus       396 e~ei~~~~~~~~~L~~~i~~Y~~~-m~-~~~~~~~  428 (432)
                      ...+..++.+|..|.++|+.-..+ ++ ..++.++
T Consensus        80 ~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~l~  114 (230)
T PF10146_consen   80 QEKIQRLYEEYKPLKDEINELRKEYLGLEPLPSLE  114 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Confidence            677788889999999999988888 43 2444444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=94.71  E-value=9.8  Score=43.17  Aligned_cols=22  Identities=9%  Similarity=0.140  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 014013          399 LQELASKAEEIVEKFQQYTNSI  420 (432)
Q Consensus       399 i~~~~~~~~~L~~~i~~Y~~~m  420 (432)
                      ++.++.+|..=...+..|-.++
T Consensus      1712 l~dLe~~y~~~~~~L~~~~aeL 1733 (1758)
T KOG0994|consen 1712 LKDLELEYLRNEQALEDKAAEL 1733 (1758)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHh
Confidence            3444444444444444444443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.34  E-value=8.8  Score=41.10  Aligned_cols=78  Identities=19%  Similarity=0.239  Sum_probs=53.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 014013          161 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE--KFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL  238 (432)
Q Consensus       161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~--~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i  238 (432)
                      .+...+...++..|+.+...+-+...+++.+.+.++.+.+...-  .|.+....|..+..|-++|..++.+-..-++...
T Consensus       401 ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLR  480 (961)
T KOG4673|consen  401 SSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLR  480 (961)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34446666777778888777777777777777777766544332  4556677777888888888877776666555433

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.29  E-value=5.1  Score=38.23  Aligned_cols=60  Identities=15%  Similarity=0.323  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHH
Q 014013          175 RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL  234 (432)
Q Consensus       175 e~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~L  234 (432)
                      ..+|.++...+..+..+++.+..+..++..++.++...+.++.+++..|+..|-...+.+
T Consensus        37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I   96 (265)
T COG3883          37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI   96 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555556666666666666666666666666666666666666665555554433333

>PF13514 AAA_27: AAA domain

Probab=94.28  E-value=14  Score=43.10  Aligned_cols=75  Identities=13%  Similarity=0.194  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh----hcCHHHHHHHHHHHHH
Q 014013          169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI----VQSPEKLQRTLEEKKS  243 (432)
Q Consensus       169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i----v~SPe~Lk~~i~el~~  243 (432)
                      ..-..+-............+...+..+......+...+..+...+..........-..+    .-+|..+...+..+..
T Consensus       659 ~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~  737 (1111)
T PF13514_consen  659 EEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEE  737 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence            33333334444444444455555555555555666666666666665555555333333    2367777776655544

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=94.26  E-value=8.6  Score=40.69  Aligned_cols=16  Identities=6%  Similarity=0.245  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q 014013          405 KAEEIVEKFQQYTNSI  420 (432)
Q Consensus       405 ~~~~L~~~i~~Y~~~m  420 (432)
                      ++..+...+..|-.++
T Consensus       338 e~~l~~~el~~~~ee~  353 (511)
T PF09787_consen  338 ELRLYYQELYHYREEL  353 (511)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333444444444444

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=94.26  E-value=0.012  Score=65.67  Aligned_cols=51  Identities=18%  Similarity=0.154  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          370 RQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI  420 (432)
Q Consensus       370 ~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m  420 (432)
                      ....+......+-.++..+..++..|+.++..=..++..+......-+.+|
T Consensus       480 ~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~l  530 (859)
T PF01576_consen  480 AEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESL  530 (859)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHH
Confidence            333333344444445555555555555555555545544444433333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=94.26  E-value=0.69  Score=42.44  Aligned_cols=81  Identities=21%  Similarity=0.225  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013          129 LTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  208 (432)
Q Consensus       129 ~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~  208 (432)
                      |..+++.+.++..+++++..+..++.....+.+..+++++.+.+.|+.+...|+.....+..++..++.+-.+|...++-
T Consensus       130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El  209 (290)
T COG4026         130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVEL  209 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccc
Confidence            55666666666666666666655555555555555555556666666666666665556666666666666666555543


Q ss_pred             h
Q 014013          209 T  209 (432)
Q Consensus       209 ~  209 (432)
                      .
T Consensus       210 ~  210 (290)
T COG4026         210 P  210 (290)
T ss_pred             h
Confidence            3

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.18  E-value=9.5  Score=40.86  Aligned_cols=73  Identities=19%  Similarity=0.139  Sum_probs=40.6

Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCH
Q 014013          159 RELPLVQEVDAKVKELRQTIQDLNKHQVS-LRT-TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSP  231 (432)
Q Consensus       159 ~~~~~i~el~~e~~eLe~~L~~l~~~q~~-l~~-~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SP  231 (432)
                      ..+..++-+-.+.+.|+.+++.+++.... +-. ++.+..+.++.+...=+.+......-..-|.+|++++-.+.
T Consensus       413 ~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~e  487 (961)
T KOG4673|consen  413 TLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAE  487 (961)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Confidence            34445555556666666666666554442 222 33444444444544445555555555666778888777765

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.10  E-value=0.037  Score=60.88  Aligned_cols=14  Identities=7%  Similarity=0.190  Sum_probs=9.0

Q ss_pred             hHHHHHHHHHHHHh
Q 014013           37 DFVSDLYTRLLIFL   50 (432)
Q Consensus        37 ~~v~~ly~~~l~~~   50 (432)
                      .-+..||..+..|+
T Consensus        70 ~NLk~l~~~i~~yy   83 (713)
T PF05622_consen   70 SNLKKLLRNIKSYY   83 (713)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            44567777777544

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.98  E-value=14  Score=42.06  Aligned_cols=55  Identities=22%  Similarity=0.372  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 014013          175 RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ  229 (432)
Q Consensus       175 e~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~  229 (432)
                      ...+..+......+...+..+.....+....+.++...+......+..+...+..
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~  442 (908)
T COG0419         388 EEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ  442 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444444444444444444444444433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.54  E-value=0.71  Score=42.23  Aligned_cols=104  Identities=21%  Similarity=0.317  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA  201 (432)
Q Consensus       122 ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~e  201 (432)
                      +..+..+++.++..+..+...+..+..++..+..+.......+..+..++..|+.++..+.............++.+...
T Consensus        76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~  155 (194)
T PF08614_consen   76 LAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA  155 (194)
T ss_dssp             --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHh
Q 014013          202 LDEKFSQTEFDLVQSVQQNADLRS  225 (432)
Q Consensus       202 l~~~l~~~~~~l~~l~~e~~~L~~  225 (432)
                      +.-.++.++..+..++.|...|=.
T Consensus       156 L~l~~~~~e~k~~~l~~En~~Lv~  179 (194)
T PF08614_consen  156 LQLQLNMLEEKLRKLEEENRELVE  179 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666665543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.41  E-value=1.7  Score=32.94  Aligned_cols=44  Identities=23%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014013          164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS  207 (432)
Q Consensus       164 i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~  207 (432)
                      ++++..+|..|..+...|...-..+..+......+...+..++.
T Consensus        27 ~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~   70 (72)
T PF06005_consen   27 NEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33444444444444444444444444555555555555544443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.35  E-value=8.9  Score=37.80  Aligned_cols=12  Identities=0%  Similarity=0.136  Sum_probs=10.4

Q ss_pred             HHHHHHHHcCCC
Q 014013           87 MVKEVVTTVNCP   98 (432)
Q Consensus        87 ~~~~~~~~~gv~   98 (432)
                      +++.||.++||.
T Consensus        11 sL~dFL~~t~I~   22 (312)
T smart00787       11 SLQDFLNMTGIR   22 (312)
T ss_pred             cHHHHHHHcCce
Confidence            578999999997

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.13  E-value=15  Score=39.92  Aligned_cols=16  Identities=13%  Similarity=0.223  Sum_probs=8.4

Q ss_pred             CCCcccccCCCCCcch
Q 014013          100 NFTLKDLIRPDATRTE  115 (432)
Q Consensus       100 DFt~~Dl~~P~~~R~~  115 (432)
                      --.--.+..|...+.+
T Consensus       269 ~tlP~E~Vpp~~r~~r  284 (1118)
T KOG1029|consen  269 KTLPPELVPPSFRSSR  284 (1118)
T ss_pred             CCCChhhcCccccccc
Confidence            3334456666655555

>PRK10869 recombination and repair protein; Provisional

Probab=93.12  E-value=14  Score=39.48  Aligned_cols=25  Identities=12%  Similarity=0.153  Sum_probs=12.2

Q ss_pred             HHHHHHHcCCCCCCCcccccCCCCCcch
Q 014013           88 VKEVVTTVNCPMNFTLKDLIRPDATRTE  115 (432)
Q Consensus        88 ~~~~~~~~gv~~DFt~~Dl~~P~~~R~~  115 (432)
                      ...++...|-+ +  -.-|++|...|-.
T Consensus       121 ~~~li~ihgQ~-~--~~~ll~~~~~~~l  145 (553)
T PRK10869        121 GQLLIQIHGQH-A--HQLLLKPEHQKTL  145 (553)
T ss_pred             HHhhhheeCcC-h--HHHhcCHHHHHHH
Confidence            34444555655 3  2344566655443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.04  E-value=16  Score=39.95  Aligned_cols=12  Identities=25%  Similarity=0.357  Sum_probs=7.8

Q ss_pred             hhHHHHHHHHHH
Q 014013           36 PDFVSDLYTRLL   47 (432)
Q Consensus        36 ~~~v~~ly~~~l   47 (432)
                      -..|+++...+|
T Consensus       542 e~viqgl~A~lL  553 (970)
T KOG0946|consen  542 EQVIQGLCAFLL  553 (970)
T ss_pred             HHHHHHHHHHHH
Confidence            456677776666

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=92.87  E-value=16  Score=39.37  Aligned_cols=38  Identities=18%  Similarity=0.106  Sum_probs=22.9

Q ss_pred             HHHHHHhhcCc-CCCChhhcCCCChhHHHHHHHHHHHHh
Q 014013           13 EIVTILTETEI-AVITENDLKNPNPDFVSDLYTRLLIFL   50 (432)
Q Consensus        13 eIv~~L~~~~~-~~~t~~dl~kPt~~~v~~ly~~~l~~~   50 (432)
                      .|+..+.++|+ ..+.-..+.=|+..-++.||.+++.-+
T Consensus        70 ~lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLiekL  108 (594)
T PF05667_consen   70 SLAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLIEKL  108 (594)
T ss_pred             HHHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHHHHC
Confidence            34555566666 245555666666666777766666544

>TIGR00634 recN DNA repair protein RecN

Probab=92.72  E-value=16  Score=39.11  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA  201 (432)
Q Consensus       165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~e  201 (432)
                      ..+..+...++.+|.++.........+++.++.+..+
T Consensus       164 ~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~E  200 (563)
T TIGR00634       164 RELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEE  200 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=92.59  E-value=23  Score=40.58  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 014013          316 SLEAKLIERQGKVEQLDELQQQL  338 (432)
Q Consensus       316 ~l~~ql~~~~~k~~~l~~~~~~~  338 (432)
                      .+..++..|+..++++.......
T Consensus       671 ~~e~~lk~~q~~~eq~~~E~~~~  693 (1317)
T KOG0612|consen  671 KLERKLKMLQNELEQENAEHHRL  693 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555444433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=92.52  E-value=7.9  Score=35.03  Aligned_cols=62  Identities=11%  Similarity=0.251  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013          165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK  226 (432)
Q Consensus       165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~  226 (432)
                      ..+..++.+|+.-+..+...-..+.+....+..+.+.|..++..+...-..+..+.+.|+.+
T Consensus        63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~  124 (193)
T PF14662_consen   63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR  124 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence            33455566666666666666666666666666666666666666655555555555555444

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=92.47  E-value=8.1  Score=35.01  Aligned_cols=72  Identities=14%  Similarity=0.159  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 014013          171 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK  242 (432)
Q Consensus       171 ~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~  242 (432)
                      .+.++.....+...-..+...+.+.+.--.+...+.++....++=+..+.++...+.......+...-++++
T Consensus        48 ~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~  119 (205)
T KOG1003|consen   48 MKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLR  119 (205)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444445555555555555555556666666666666666665555555555554444443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=92.43  E-value=18  Score=39.05  Aligned_cols=26  Identities=35%  Similarity=0.321  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          315 KSLEAKLIERQGKVEQLDELQQQLEK  340 (432)
Q Consensus       315 ~~l~~ql~~~~~k~~~l~~~~~~~~~  340 (432)
                      +.|..++..++.++..++++++.+..
T Consensus       198 keL~~kl~~l~~~l~~~~e~le~K~q  223 (617)
T PF15070_consen  198 KELQKKLGELQEKLHNLKEKLELKSQ  223 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            46677777777777777777666644

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=92.42  E-value=0.037  Score=60.97  Aligned_cols=12  Identities=25%  Similarity=0.377  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHH
Q 014013          314 DKSLEAKLIERQ  325 (432)
Q Consensus       314 ~~~l~~ql~~~~  325 (432)
                      ...|+..+..|.
T Consensus       314 ~~~Le~el~sW~  325 (722)
T PF05557_consen  314 NEKLEDELNSWE  325 (722)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHH
Confidence            333444444443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=92.37  E-value=17  Score=38.55  Aligned_cols=40  Identities=15%  Similarity=0.302  Sum_probs=20.4

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHH
Q 014013          198 KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRT  237 (432)
Q Consensus       198 e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~  237 (432)
                      ....+...+++.-..+..+..++...-+.+--+|.+|...
T Consensus       263 ~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~v  302 (557)
T COG0497         263 KLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEV  302 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            3344444444555555555555555555555555555533

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=92.28  E-value=4.7  Score=38.29  Aligned_cols=109  Identities=14%  Similarity=0.225  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT  199 (432)
Q Consensus       120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~  199 (432)
                      ..+..|-..+.+|..++..-+-.++.+++.+..-+.+.+........|..+|..|-.....+.+....+..++.-.....
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv   97 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV   97 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence            44555555566777777666666666666666666666666666666777777777777777777777777777777777


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014013          200 GALDEKFSQTEFDLVQSVQQNADLRSKIV  228 (432)
Q Consensus       200 ~el~~~l~~~~~~l~~l~~e~~~L~~~iv  228 (432)
                      .-+...+......+..+.+++.++++.+.
T Consensus        98 ~~lEgQl~s~Kkqie~Leqelkr~KsELE  126 (307)
T PF10481_consen   98 NFLEGQLNSCKKQIEKLEQELKRCKSELE  126 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777666654

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=92.26  E-value=8.6  Score=34.84  Aligned_cols=60  Identities=17%  Similarity=0.222  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 014013          177 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQR  236 (432)
Q Consensus       177 ~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~  236 (432)
                      .+..+++....+..+.+....+...+..+|.+++..-.+....+.-|..+..+..+++..
T Consensus         5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~   64 (205)
T KOG1003|consen    5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEA   64 (205)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHH
Confidence            444555555556666666666666666666666555554444444445454555444443

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=92.25  E-value=5.4  Score=32.50  Aligned_cols=72  Identities=17%  Similarity=0.350  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013          130 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  208 (432)
Q Consensus       130 ~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~  208 (432)
                      .+|...++++...+..|+..++..+..+       .++..+.+.|++.+..|..+..+....+.++..+..++...++.
T Consensus         5 ~~l~as~~el~n~La~Le~slE~~K~S~-------~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen    5 EALEASQNELQNRLASLERSLEDEKTSQ-------GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhhH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555556665555555554332       23344445555555555555555555555555555444444443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.12  E-value=21  Score=38.97  Aligned_cols=36  Identities=19%  Similarity=0.207  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Q 014013          372 KKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE  407 (432)
Q Consensus       372 ~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~  407 (432)
                      ++++....+|+....++.++++.+...+-+.+..|.
T Consensus       556 kE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk  591 (1118)
T KOG1029|consen  556 KETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK  591 (1118)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444555555555777766666655555444

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=92.03  E-value=15  Score=37.28  Aligned_cols=36  Identities=17%  Similarity=0.023  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCH------------HHHHHHHHHHHHHH
Q 014013          210 EFDLVQSVQQNADLRSKIVQSP------------EKLQRTLEEKKSIR  245 (432)
Q Consensus       210 ~~~l~~l~~e~~~L~~~iv~SP------------e~Lk~~i~el~~~l  245 (432)
                      -..+..+...+..|++-|=.+|            .-|...+..|...+
T Consensus       208 la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~l  255 (388)
T PF04912_consen  208 LARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQL  255 (388)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHH
Confidence            3456666666677766664433            35666777776554

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=91.93  E-value=4.1  Score=39.74  Aligned_cols=67  Identities=19%  Similarity=0.206  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 014013          149 EIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQ  215 (432)
Q Consensus       149 ~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~  215 (432)
                      +|..+...+......++++..++.+|...|...+..|..|..++.+++.+..+...-+.+...++..
T Consensus       235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~  301 (306)
T PF04849_consen  235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKT  301 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444445566777778888888888888888888877777776666655555554444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=91.86  E-value=2.6  Score=32.24  Aligned_cols=47  Identities=23%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013          163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT  209 (432)
Q Consensus       163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~  209 (432)
                      .|+++...|..|..+...+......+..+...++.+...+..+|..+
T Consensus        26 EieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L   72 (79)
T PRK15422         26 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   72 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666667777777766667777777777777777776666544

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.81  E-value=3.2  Score=37.91  Aligned_cols=101  Identities=16%  Similarity=0.327  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 014013          317 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA  396 (432)
Q Consensus       317 l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e  396 (432)
                      +..++.....+++.++..+..    ....+..++.....|+..+..+..++..++.-++.+.+++..+..+...+    +
T Consensus        93 l~~~L~~~~~~l~~l~~~~~~----~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~----e  164 (194)
T PF08614_consen   93 LAQQLVELNDELQELEKELSE----KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML----E  164 (194)
T ss_dssp             -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred             ccccccccccccchhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence            444455555555555444433    33445556666666667777777777777777777777777777777766    7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014013          397 AKLQELASKAEEIVEKFQQYTNSIGTLLP  425 (432)
Q Consensus       397 ~ei~~~~~~~~~L~~~i~~Y~~~m~~~~~  425 (432)
                      ..+..+..+...|+.-.=.|+..=+..|+
T Consensus       165 ~k~~~l~~En~~Lv~Rwm~~k~~eAe~mN  193 (194)
T PF08614_consen  165 EKLRKLEEENRELVERWMQRKAQEAERMN  193 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77778888888887776666655444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.73  E-value=27  Score=39.49  Aligned_cols=58  Identities=10%  Similarity=0.249  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 014013          165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD  222 (432)
Q Consensus       165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~  222 (432)
                      .....++..+.+++..+......-..++...+.+...+...+......+...+..+..
T Consensus       230 ~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e  287 (1141)
T KOG0018|consen  230 EKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE  287 (1141)
T ss_pred             hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444444444444444444444444444444444444444444444444444443333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=91.62  E-value=36  Score=40.62  Aligned_cols=72  Identities=8%  Similarity=0.109  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 014013          315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITS  386 (432)
Q Consensus       315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~  386 (432)
                      ...+..+...+.++..+..++...........+++.+++.+++.++.....++.............+...+.
T Consensus       892 ~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~  963 (1353)
T TIGR02680       892 REAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEE  963 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555555544443355555555555555555444444444444444444443333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=91.48  E-value=22  Score=38.04  Aligned_cols=55  Identities=20%  Similarity=0.317  Sum_probs=38.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014013          160 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV  214 (432)
Q Consensus       160 ~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~  214 (432)
                      ....+..+..+...+...|.+|...-...+..+..++..-..+...+....+...
T Consensus       106 ~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G  160 (560)
T PF06160_consen  106 IEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYG  160 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            4556677777777777777777777777777777777777777777665544433

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=91.48  E-value=11  Score=34.39  Aligned_cols=119  Identities=13%  Similarity=0.170  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013           76 VRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE  155 (432)
Q Consensus        76 ~~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~  155 (432)
                      +++...+.-+..+-.-|..-|++               +.    ...+.| +++..+...+....+....+..++.+...
T Consensus        65 dd~~~~f~~~~~tl~~LE~~GFn---------------V~----~l~~RL-~kLL~lk~~~~~~~e~~k~le~~~~~~~~  124 (190)
T PF05266_consen   65 DDSRSSFESLMKTLSELEEHGFN---------------VK----FLRSRL-NKLLSLKDDQEKLLEERKKLEKKIEEKEA  124 (190)
T ss_pred             CCcHHHHHHHHHHHHHHHHcCCc---------------cH----HHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666667777776               22    233333 33777777777666666666666555522


Q ss_pred             HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013          156 VRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA  221 (432)
Q Consensus       156 k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~  221 (432)
                             .-.+++....+|+.+|.++++....+....+....+...+....+.++..+..++.+-.
T Consensus       125 -------~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~  183 (190)
T PF05266_consen  125 -------ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ  183 (190)
T ss_pred             -------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   33455666777777777777777777777777777777777777777777666665543

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=91.31  E-value=26  Score=38.45  Aligned_cols=42  Identities=19%  Similarity=0.377  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013          165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  206 (432)
Q Consensus       165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l  206 (432)
                      +.++.+...|+.+|++++-.-..+-.+|.++.+++-.|...+
T Consensus        72 ~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqv  113 (717)
T PF09730_consen   72 EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQV  113 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444444444444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.02  E-value=4.5  Score=37.37  Aligned_cols=73  Identities=18%  Similarity=0.186  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 014013          315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES  394 (432)
Q Consensus       315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~  394 (432)
                      ..++.++..++.++..+..+.+....+.+.+.+.....+.+|+++...+..+++       ....+++.++.+.+.++..
T Consensus        96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~-------~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884         96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLI-------VAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555444444444444444444444445555555444444       3444444444444455443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.99  E-value=5.2  Score=39.51  Aligned_cols=89  Identities=18%  Similarity=0.212  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 014013          139 LEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ  218 (432)
Q Consensus       139 l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~  218 (432)
                      +..++..++.+...+.......+...+++.++...++.+...++......-..++.+.-+..+.......+...+.-+..
T Consensus        48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~  127 (314)
T PF04111_consen   48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN  127 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444455556666666666666666666666667777777777777777777777777777


Q ss_pred             HHHHHHhhh
Q 014013          219 QNADLRSKI  227 (432)
Q Consensus       219 e~~~L~~~i  227 (432)
                      ..++|+..-
T Consensus       128 ~L~~L~ktN  136 (314)
T PF04111_consen  128 QLDRLRKTN  136 (314)
T ss_dssp             HHHCHHT--
T ss_pred             HHHHHHhcC
Confidence            777777643

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.99  E-value=5.8  Score=36.66  Aligned_cols=21  Identities=10%  Similarity=0.336  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 014013          319 AKLIERQGKVEQLDELQQQLE  339 (432)
Q Consensus       319 ~ql~~~~~k~~~l~~~~~~~~  339 (432)
                      .++..++.+++.++.++....
T Consensus        93 ~rlp~le~el~~l~~~l~~~~  113 (206)
T PRK10884         93 TRVPDLENQVKTLTDKLNNID  113 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444433

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=90.92  E-value=19  Score=36.10  Aligned_cols=59  Identities=14%  Similarity=0.167  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013          163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA  221 (432)
Q Consensus       163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~  221 (432)
                      +.+....+.+..+.++..+++.......+...+.+.-..+..++..+......+..+..
T Consensus       110 El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q  168 (499)
T COG4372         110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ  168 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555556666555555555555555555555555555554444444443

>PLN02939 transferase, transferring glycosyl groups

Probab=90.79  E-value=34  Score=38.86  Aligned_cols=48  Identities=13%  Similarity=0.088  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhH
Q 014013          315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMES  362 (432)
Q Consensus       315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~  362 (432)
                      ..+|.++..+..+++.-..++...-+-...-+++.+..+..|++|-..
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (977)
T PLN02939        354 ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK  401 (977)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            445555555555555555555555555556666666666666665543

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.77  E-value=9  Score=32.18  Aligned_cols=28  Identities=11%  Similarity=0.126  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 014013          193 NKLKEKTGALDEKFSQTEFDLVQSVQQN  220 (432)
Q Consensus       193 ~~~k~e~~el~~~l~~~~~~l~~l~~e~  220 (432)
                      .++..+.+.+..-+.+....+.+++..+
T Consensus        78 ~~l~~ry~t~LellGEK~E~veEL~~Dv  105 (120)
T PF12325_consen   78 EELQQRYQTLLELLGEKSEEVEELRADV  105 (120)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            3333333333333333333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=90.72  E-value=3.3  Score=45.81  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Q 014013          373 KVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE  407 (432)
Q Consensus       373 ~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~  407 (432)
                      ++.....++...+.++.-+++-|...+......+.
T Consensus       607 e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~  641 (722)
T PF05557_consen  607 EIAELKAELASAEKRNQRLKEVFKAKSQEFREAVY  641 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555544444433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.13  E-value=10  Score=36.11  Aligned_cols=18  Identities=11%  Similarity=0.067  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHhHHHH
Q 014013          374 VEAVVTEVDAITSKTKFV  391 (432)
Q Consensus       374 ie~~~~~i~~ie~~~~~~  391 (432)
                      ++...+.++..+.+++++
T Consensus        72 ~~~l~~~v~~q~~el~~L   89 (251)
T PF11932_consen   72 NEQLERQVASQEQELASL   89 (251)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.11  E-value=31  Score=37.38  Aligned_cols=115  Identities=17%  Similarity=0.186  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013          130 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT  209 (432)
Q Consensus       130 ~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~  209 (432)
                      +.+...+..+...|...++++.++-..+.............-.-|+..+..+......++..+++-+.+..++..+++.+
T Consensus        57 e~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l  136 (660)
T KOG4302|consen   57 EEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKL  136 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555566677777777777665543321111111111225666666667777777777777777766666666666


Q ss_pred             HHHHHHHHHHHHHHHhhhhcCHHHHH-HHHHHHHHHHHHH
Q 014013          210 EFDLVQSVQQNADLRSKIVQSPEKLQ-RTLEEKKSIREEA  248 (432)
Q Consensus       210 ~~~l~~l~~e~~~L~~~iv~SPe~Lk-~~i~el~~~l~~l  248 (432)
                      ...+..-    ..+-..+..++..|- ..+++++..|.++
T Consensus       137 ~~~l~g~----~~~~~~~~~D~~dlsl~kLeelr~~L~~L  172 (660)
T KOG4302|consen  137 CEELGGP----EDLPSFLIADESDLSLEKLEELREHLNEL  172 (660)
T ss_pred             HHHhcCC----ccCCcccccCcccccHHHHHHHHHHHHHH
Confidence            5555543    233344445555544 5666666666443

>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B

Probab=90.11  E-value=2  Score=37.20  Aligned_cols=43  Identities=16%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013          166 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  208 (432)
Q Consensus       166 el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~  208 (432)
                      ......+.+..++..+.+........+.+++.+..+|..++-.
T Consensus        48 ~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~   90 (141)
T PF13874_consen   48 QHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLR   90 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444445555444445555555555555555444443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=89.97  E-value=5.7  Score=30.16  Aligned_cols=55  Identities=16%  Similarity=0.298  Sum_probs=31.9

Q ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013          155 EVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT  209 (432)
Q Consensus       155 ~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~  209 (432)
                      .+.......|..|..++.+|+.+-..+......|..+...++.+.+.+..+|..+
T Consensus        11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen   11 EKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455566666666666666666666666666666666666655555443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=89.67  E-value=37  Score=37.63  Aligned_cols=28  Identities=7%  Similarity=0.192  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013          194 KLKEKTGALDEKFSQTEFDLVQSVQQNA  221 (432)
Q Consensus       194 ~~k~e~~el~~~l~~~~~~l~~l~~e~~  221 (432)
                      .++.....+...+.+......+...+.+
T Consensus       362 q~~~ql~~le~~~~e~q~~~qe~~~e~e  389 (980)
T KOG0980|consen  362 QYENQLLALEGELQEQQREAQENREEQE  389 (980)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3444444444444544444444444444

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=89.60  E-value=41  Score=37.95  Aligned_cols=113  Identities=19%  Similarity=0.235  Sum_probs=59.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 014013          120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK-----HQVSLRTTLNK  194 (432)
Q Consensus       120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~-----~q~~l~~~~~~  194 (432)
                      .++.+... +..+++....++.....-...+..++.......+.|+-+.. .......|.-+..     .......+++.
T Consensus       175 ~ll~~h~e-L~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~re-r~~~~~~Ie~l~~k~~~v~y~~~~~ey~~  252 (1072)
T KOG0979|consen  175 ELLQYHIE-LMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRE-RERKKSKIELLEKKKKWVEYKKHDREYNA  252 (1072)
T ss_pred             hhHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccchHhhhHHHHH
Confidence            67777777 88888888888776666666666665555555554444322 2222333332211     12233455555


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHH
Q 014013          195 LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL  234 (432)
Q Consensus       195 ~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~L  234 (432)
                      ++..+..++..+..+...+..+...+..|++.+...-.++
T Consensus       253 ~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~  292 (1072)
T KOG0979|consen  253 YKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKI  292 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHH
Confidence            5555555555555555555444444444444333333333

>PRK10869 recombination and repair protein; Provisional

Probab=89.50  E-value=33  Score=36.73  Aligned_cols=21  Identities=14%  Similarity=-0.156  Sum_probs=9.8

Q ss_pred             CCCChhHHHHHHHHHHHHhcc
Q 014013           32 KNPNPDFVSDLYTRLLIFLDV   52 (432)
Q Consensus        32 ~kPt~~~v~~ly~~~l~~~~~   52 (432)
                      +=||..==..|...+-..+|.
T Consensus        28 tGetGaGKS~ildAi~~llG~   48 (553)
T PRK10869         28 TGETGAGKSIAIDALGLCLGG   48 (553)
T ss_pred             ECCCCCChHHHHHHHHHHhCC
Confidence            445533334444444455564

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=89.12  E-value=14  Score=32.06  Aligned_cols=39  Identities=13%  Similarity=0.193  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014013          376 AVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ  414 (432)
Q Consensus       376 ~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~  414 (432)
                      ....++..+...+...+..|+.|++.-+.+|.+|..++.
T Consensus       112 ~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~  150 (151)
T PF11559_consen  112 QEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN  150 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334456666677778999999999999999999988753

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=89.11  E-value=29  Score=35.54  Aligned_cols=47  Identities=17%  Similarity=0.070  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 014013          314 DKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM  360 (432)
Q Consensus       314 ~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~  360 (432)
                      .+.+++++.+++.++.++.++....++.+....++...-...+++.-
T Consensus       377 kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~  423 (493)
T KOG0804|consen  377 KKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE  423 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            35566666677777777766666655555544444444444343333

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=88.77  E-value=12  Score=30.60  Aligned_cols=62  Identities=19%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 014013          168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ  229 (432)
Q Consensus       168 ~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~  229 (432)
                      .+...++...|..|....+........+..++..|...+..+...-....+.+..|++.|..
T Consensus         8 ~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~e   69 (107)
T PF09304_consen    8 EASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDE   69 (107)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555555444444445555555555555555555555555555555555543

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=88.76  E-value=44  Score=37.16  Aligned_cols=48  Identities=17%  Similarity=0.247  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014013          181 LNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV  228 (432)
Q Consensus       181 l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv  228 (432)
                      +......+..+...+........++++.....+.++++.+..|++++.
T Consensus       594 l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~  641 (769)
T PF05911_consen  594 LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE  641 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444555555555555555555555554

The function of this family is unknown.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=88.75  E-value=31  Score=35.45  Aligned_cols=40  Identities=18%  Similarity=0.187  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 014013          374 VEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF  413 (432)
Q Consensus       374 ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i  413 (432)
                      -+....+.-.+..+-+..+.....|-+++...|.+|+++|
T Consensus       487 Ke~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv  526 (527)
T PF15066_consen  487 KETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV  526 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            3334445555666666777777778888888888888876

>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle

Probab=88.63  E-value=0.42  Score=41.56  Aligned_cols=38  Identities=18%  Similarity=0.385  Sum_probs=26.6

Q ss_pred             HHHHHhhcCcCCCChhhcCCCChhHHHHHHHHHHHHhc
Q 014013           14 IVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLD   51 (432)
Q Consensus        14 Iv~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l~~~~   51 (432)
                      +...+..||+++||-.||.+|+|.-+..+...++.|+-
T Consensus        90 ~~~~~~~~gv~DF~l~Dl~~P~~~R~~~~LSalINF~~  127 (146)
T PF03800_consen   90 LQKFLKDCGVPDFSLSDLLKPDPKRTRRILSALINFAR  127 (146)
T ss_dssp             HHHHHHHTT-----HHHHHS--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            44567889999999999999999999999999997763

It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.58  E-value=8.3  Score=28.70  Aligned_cols=45  Identities=22%  Similarity=0.398  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013          164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  208 (432)
Q Consensus       164 i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~  208 (432)
                      |+++..+|..|.++...+.....++..+-+.+|.+...+..+|..
T Consensus        27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs   71 (79)
T COG3074          27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA   71 (79)
T ss_pred             HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555555555555555555555554443

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.57  E-value=33  Score=35.56  Aligned_cols=44  Identities=11%  Similarity=0.334  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013          165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  208 (432)
Q Consensus       165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~  208 (432)
                      .+-.-+++.+.+++.+|++.+......+.++|.+..+|..+|-.
T Consensus       351 ~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLR  394 (508)
T KOG3091|consen  351 KQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILR  394 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555555555555555555555555555444443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.36  E-value=20  Score=32.90  Aligned_cols=63  Identities=24%  Similarity=0.362  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          140 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL  202 (432)
Q Consensus       140 ~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el  202 (432)
                      .+.|..|..+|.+++.+.......+.++..+|..|...|..+......|...+..+...+..+
T Consensus        26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L   88 (201)
T PF13851_consen   26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSL   88 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777888888888888888888888999999999999988888888888777777666543

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.31  E-value=13  Score=35.44  Aligned_cols=57  Identities=14%  Similarity=0.223  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013          169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  225 (432)
Q Consensus       169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~  225 (432)
                      .+...|..++..++++...+....+.+.........++.+++..+.++..-...|.+
T Consensus        49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p  105 (251)
T PF11932_consen   49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP  105 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=88.24  E-value=14  Score=31.33  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014013          351 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVK  392 (432)
Q Consensus       351 ~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k  392 (432)
                      +.....++++..++.+.+..+.+++.+..-+..|+.+|..+.
T Consensus        82 ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie  123 (126)
T PF07889_consen   82 EISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE  123 (126)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444566666666666666666777777777777766653

The region featured in this family is approximately 100 amino acids long.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=88.04  E-value=48  Score=36.83  Aligned_cols=21  Identities=14%  Similarity=0.058  Sum_probs=12.6

Q ss_pred             CCCCCcchhHhhhhHHHHHHHHHHH
Q 014013          108 RPDATRTEDTKMNLLRPIAEDLTRL  132 (432)
Q Consensus       108 ~P~~~R~~~~~~~~ls~iin~~~~f  132 (432)
                      .|+|.+..    .+...+++.|...
T Consensus       163 ~~dP~~Aa----~iaN~la~~Y~~~  183 (754)
T TIGR01005       163 SEDPKLAA----AIPDAIAAAYIAG  183 (754)
T ss_pred             cCCHHHHH----HHHHHHHHHHHHH
Confidence            46666655    6666666655543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=87.42  E-value=7.8  Score=29.16  Aligned_cols=60  Identities=13%  Similarity=0.285  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013          167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK  226 (432)
Q Consensus       167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~  226 (432)
                      +++.+..|...|..+.+...........+..+.......|..+-..+..++.+++.|+..
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666777777777777777777777777777777777777777777777777776655

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.24  E-value=42  Score=35.28  Aligned_cols=56  Identities=25%  Similarity=0.260  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013          169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  224 (432)
Q Consensus       169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~  224 (432)
                      +.-..+-.+|.+|.....+++.++...+.++..+...-.++...-..+..+.-+|+
T Consensus       100 akE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr  155 (772)
T KOG0999|consen  100 AKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLR  155 (772)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence            33333444444444444555555555555555554444444333333333333343

>PF15294 Leu_zip: Leucine zipper

Probab=87.16  E-value=24  Score=34.06  Aligned_cols=34  Identities=18%  Similarity=0.344  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEK  198 (432)
Q Consensus       165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e  198 (432)
                      ..+..+|+.|+.+|..+.........+..++...
T Consensus       135 ~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~  168 (278)
T PF15294_consen  135 DRLQEENEKLKERLKSLEKQATSALDEKSKLEAQ  168 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555554444444444443333333

>smart00787 Spc7 Spc7 kinetochore protein

Probab=87.07  E-value=33  Score=33.85  Aligned_cols=29  Identities=21%  Similarity=0.271  Sum_probs=15.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          162 PLVQEVDAKVKELRQTIQDLNKHQVSLRT  190 (432)
Q Consensus       162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~  190 (432)
                      |..+-..--+++|...|.+=+....++..
T Consensus        63 P~LElY~~sC~EL~~~I~egr~~~~~~E~   91 (312)
T smart00787       63 PLLELYQFSCKELKKYISEGRDLFKEIEE   91 (312)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445566666666655554444433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=86.99  E-value=25  Score=32.97  Aligned_cols=79  Identities=23%  Similarity=0.354  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 014013          315 KSLEAKLIERQGKVEQLDELQQ--------QLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITS  386 (432)
Q Consensus       315 ~~l~~ql~~~~~k~~~l~~~~~--------~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~  386 (432)
                      +.+++++...+.....|+.+..        .+.++.-.+...+......++..+.....-.+..+..+..+..+|..++.
T Consensus        55 k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~  134 (225)
T COG1842          55 KQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA  134 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666666666666666533        23334444455555555555555555555555555555555555555555


Q ss_pred             hHHHHHH
Q 014013          387 KTKFVKE  393 (432)
Q Consensus       387 ~~~~~k~  393 (432)
                      ++..++.
T Consensus       135 ~~~~l~a  141 (225)
T COG1842         135 KKEALKA  141 (225)
T ss_pred             HHHHHHH
Confidence            5554443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=86.64  E-value=25  Score=32.12  Aligned_cols=56  Identities=18%  Similarity=0.279  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 014013          164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ  219 (432)
Q Consensus       164 i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e  219 (432)
                      +.++...++++..+..-|+..|......+..+....++|-.-|.....++-.++..
T Consensus        21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~   76 (194)
T PF15619_consen   21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRER   76 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555555555555555555555544444444433333333333

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=86.26  E-value=12  Score=34.54  Aligned_cols=57  Identities=23%  Similarity=0.381  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014013          347 EDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ  414 (432)
Q Consensus       347 ~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~  414 (432)
                      ....+....|+.+.+....+.+..+.+++...++.+       ..    ..|.+.+..+|++|.++|.
T Consensus       154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e-------~~----~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE-------GL----QDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hc----ccHHHHHHHHHHHHHHHHh
Confidence            333444444555555555555555555554444444       55    5666777777888887764

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=86.24  E-value=13  Score=28.56  Aligned_cols=53  Identities=19%  Similarity=0.311  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013          173 ELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  225 (432)
Q Consensus       173 eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~  225 (432)
                      .|++++...-....=|.-+++++|.++..+......+...-..+.++...|+.
T Consensus         8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~   60 (79)
T PRK15422          8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE   60 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34444444444444455555555555555555555544444444444444443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.08  E-value=18  Score=32.11  Aligned_cols=34  Identities=6%  Similarity=0.097  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHH--cCCCCCCCcccccCCCCC
Q 014013           78 SVQIMKLYSMVKEVVTT--VNCPMNFTLKDLIRPDAT  112 (432)
Q Consensus        78 s~~~l~~~~~~~~~~~~--~gv~~DFt~~Dl~~P~~~  112 (432)
                      .++--.+-+.|-.+...  |-+. +|+=.=+|.|...
T Consensus        29 ~~~K~~v~k~Ld~L~~~g~i~~K-~~GKqkiY~~~Q~   64 (169)
T PF07106_consen   29 KVGKTAVQKALDSLVEEGKIVEK-EYGKQKIYFANQD   64 (169)
T ss_pred             hccHHHHHHHHHHHHhCCCeeee-eecceEEEeeCcc
Confidence            44445555555555555  3333 6666666666553

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=85.86  E-value=27  Score=35.15  Aligned_cols=21  Identities=24%  Similarity=0.340  Sum_probs=13.4

Q ss_pred             CCCChhHH--HHHHHHHHHHhcc
Q 014013           32 KNPNPDFV--SDLYTRLLIFLDV   52 (432)
Q Consensus        32 ~kPt~~~v--~~ly~~~l~~~~~   52 (432)
                      .||..+|.  ..|..|++..+|.
T Consensus        36 ~Np~eQF~~F~~L~~WL~~~~g~   58 (359)
T PF10498_consen   36 TNPGEQFYYFTSLCAWLISKAGR   58 (359)
T ss_pred             CCchHHHHHHHHHHHHHHHhcCC
Confidence            36776664  4566677777774

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=85.84  E-value=34  Score=32.81  Aligned_cols=54  Identities=11%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013          174 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI  227 (432)
Q Consensus       174 Le~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i  227 (432)
                      .+.++..+.....+...++.+++.+..++..+|.+++..-..+...+..++++|
T Consensus       205 ~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV  258 (269)
T PF05278_consen  205 KKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV  258 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444444455555555555555555555554444444444443

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=85.75  E-value=29  Score=32.03  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=11.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          230 SPEKLQRTLEEKKSIREEARDAEKL  254 (432)
Q Consensus       230 SPe~Lk~~i~el~~~l~~l~~~e~~  254 (432)
                      ++..+.+.+.+.....+++...|++
T Consensus        67 ~~~~i~~~~~erdq~~~dL~s~E~s   91 (207)
T PF05010_consen   67 SEAEIQKLLKERDQAYADLNSLEKS   91 (207)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            3444444554544444444444443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria

Probab=85.72  E-value=28  Score=31.77  Aligned_cols=29  Identities=10%  Similarity=0.158  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 014013          398 KLQELASKAEEIVEKFQQYTNSIGTLLPV  426 (432)
Q Consensus       398 ei~~~~~~~~~L~~~i~~Y~~~m~~~~~~  426 (432)
                      -|..+..+|..|.+.|..-+..|...|.+
T Consensus       164 AI~sL~~e~~~~~~di~~Li~~m~~sI~e  192 (201)
T PF11172_consen  164 AIASLQGEFSSIESDISQLIKEMERSIAE  192 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666666666666665544

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=85.56  E-value=62  Score=35.61  Aligned_cols=87  Identities=18%  Similarity=0.247  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 014013          140 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ  219 (432)
Q Consensus       140 ~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e  219 (432)
                      ..+|..++.++...+..........+.+...+.++......+......|+.++.++|.+-..+.....+++.+-..+...
T Consensus        33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKq  112 (717)
T PF09730_consen   33 QQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQ  112 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            34555555555555555555556666777777777777777777888888888888888888888888888777777777


Q ss_pred             HHHHHhh
Q 014013          220 NADLRSK  226 (432)
Q Consensus       220 ~~~L~~~  226 (432)
                      +..|+.-
T Consensus       113 vs~Lk~s  119 (717)
T PF09730_consen  113 VSVLKQS  119 (717)
T ss_pred             HHHHHHh
Confidence            7777654

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=84.94  E-value=70  Score=35.64  Aligned_cols=39  Identities=10%  Similarity=0.222  Sum_probs=21.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          161 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT  199 (432)
Q Consensus       161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~  199 (432)
                      ...+.+....+..++-++.+-.+.-.+-+.+-+.++.+.
T Consensus       357 r~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~el  395 (980)
T KOG0980|consen  357 RRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNEL  395 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666655554444444444444333

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.77  E-value=50  Score=33.86  Aligned_cols=17  Identities=6%  Similarity=0.202  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHhccc
Q 014013          408 EIVEKFQQYTNSIGTLL  424 (432)
Q Consensus       408 ~L~~~i~~Y~~~m~~~~  424 (432)
                      ++-..|+.|-+++...|
T Consensus       452 kllt~iH~nc~ei~E~i  468 (521)
T KOG1937|consen  452 KLLTRIHLNCMEILEMI  468 (521)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34455566655555443

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=84.58  E-value=15  Score=27.97  Aligned_cols=57  Identities=19%  Similarity=0.348  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013          170 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK  226 (432)
Q Consensus       170 e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~  226 (432)
                      .+..|-.+-..|......+...+..++....++...+..+...+..+..+++.|+..
T Consensus        13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~   69 (74)
T PF12329_consen   13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER   69 (74)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444445555555555555555555555555555555555443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=84.54  E-value=12  Score=38.66  Aligned_cols=73  Identities=19%  Similarity=0.309  Sum_probs=44.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQE-VDAKVKELRQTIQDLNKHQVSLRTTL  192 (432)
Q Consensus       120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~e-l~~e~~eLe~~L~~l~~~q~~l~~~~  192 (432)
                      +.+..++.+.-.++.+...+...+..|..+.+.++.+......+|++ +.++..++..+...|+..+.++...+
T Consensus        59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l  132 (472)
T TIGR03752        59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLI  132 (472)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            46667777777788887888888888888888777665555555533 33334444444444444433333333

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.49  E-value=15  Score=27.45  Aligned_cols=62  Identities=19%  Similarity=0.277  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 014013          174 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ  235 (432)
Q Consensus       174 Le~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk  235 (432)
                      |+.++...-....=+.-+++++|++++.+.....++......+..+.+.|+..-..=.++|+
T Consensus         9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr   70 (79)
T COG3074           9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR   70 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444555555555555555555555555555555555443333333333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=84.44  E-value=11  Score=34.75  Aligned_cols=60  Identities=15%  Similarity=0.287  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013          165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  224 (432)
Q Consensus       165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~  224 (432)
                      +++.+++.+|-.++.++....+++...++.+..++..|...+..+--.+..++...+.|.
T Consensus       145 ~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe  204 (290)
T COG4026         145 EELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE  204 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence            334444444444444444444444444444444444333333333333333333333333

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=84.43  E-value=39  Score=32.31  Aligned_cols=68  Identities=24%  Similarity=0.321  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 014013          174 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK  241 (432)
Q Consensus       174 Le~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el  241 (432)
                      .+..+..+......+..+.+.+..+..........+......+.+....|...|...-..+...++++
T Consensus        43 ~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~  110 (264)
T PF06008_consen   43 QKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQV  110 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555556666666666666666666666666666666666666666655555555444444

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.95  E-value=60  Score=34.12  Aligned_cols=80  Identities=20%  Similarity=0.272  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013          148 AEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI  227 (432)
Q Consensus       148 ~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i  227 (432)
                      .+|+.++..+......|..+.++..+-++.+..++..-.+|.+...+       +..+|.+++-.+..-+.+|.++.+++
T Consensus       331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk-------~ds~Lk~leIalEqkkEec~kme~qL  403 (654)
T KOG4809|consen  331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLK-------RDSKLKSLEIALEQKKEECSKMEAQL  403 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444555666666666666666666655555554433       34456677777777788888888877


Q ss_pred             hcCHHHH
Q 014013          228 VQSPEKL  234 (432)
Q Consensus       228 v~SPe~L  234 (432)
                      +.--..+
T Consensus       404 kkAh~~~  410 (654)
T KOG4809|consen  404 KKAHNIE  410 (654)
T ss_pred             HHHHHhh
Confidence            6554433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=83.63  E-value=15  Score=36.21  Aligned_cols=64  Identities=14%  Similarity=0.333  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHH
Q 014013          169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPE  232 (432)
Q Consensus       169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe  232 (432)
                      ++..+|+.+-.++.+....+..+...++.+-...-...+.....+.+..++...+..++...-+
T Consensus        64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~  127 (314)
T PF04111_consen   64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN  127 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333344444444444444444445555555555666666666655544433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=83.50  E-value=14  Score=27.46  Aligned_cols=48  Identities=13%  Similarity=0.229  Sum_probs=30.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013          161 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  208 (432)
Q Consensus       161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~  208 (432)
                      -..++++..+|..|.+++..+......+....+....+...|..+|-.
T Consensus        13 i~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~   60 (65)
T TIGR02449        13 LEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA   60 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            344566667777777777766666666666666666666666555543

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=83.36  E-value=49  Score=32.65  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          121 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE  155 (432)
Q Consensus       121 ~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~  155 (432)
                      -+.-+..+++.++.+|....-..++|+.....++.
T Consensus        10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKk   44 (319)
T PF09789_consen   10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKK   44 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666666666655555555544444433

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=83.16  E-value=43  Score=31.82  Aligned_cols=15  Identities=40%  Similarity=0.572  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHH
Q 014013          317 LEAKLIERQGKVEQL  331 (432)
Q Consensus       317 l~~ql~~~~~k~~~l  331 (432)
                      |+.||..+...+..+
T Consensus       187 lq~QL~~L~~EL~~~  201 (246)
T PF00769_consen  187 LQEQLKELKSELEQL  201 (246)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=82.93  E-value=40  Score=31.32  Aligned_cols=102  Identities=14%  Similarity=0.181  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 014013          293 AKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDEL-QQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQ  371 (432)
Q Consensus       293 ~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~-~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~  371 (432)
                      .++++..+...+..+...-...+.+++++...+..+..|..+ ..++..-...-..++=.+..........+....+...
T Consensus        33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~  112 (219)
T TIGR02977        33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVE  112 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHh
Q 014013          372 KKVEAVVTEVDAITSKTKFVKES  394 (432)
Q Consensus       372 ~~ie~~~~~i~~ie~~~~~~k~~  394 (432)
                      ..++.+...+..++.++..++..
T Consensus       113 ~~v~~l~~~l~~L~~ki~~~k~k  135 (219)
T TIGR02977       113 ETLAKLQEDIAKLQAKLAEARAR  135 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=82.69  E-value=46  Score=31.84  Aligned_cols=57  Identities=25%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 014013          292 SAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSED  348 (432)
Q Consensus       292 ~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e  348 (432)
                      +..+++.++..++..-....-++..|++.|.....+.+.-......+.+++..-++.
T Consensus        19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~   75 (307)
T PF10481_consen   19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMES   75 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence            334444444444444333444456666666666666666666666655555544433

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=82.64  E-value=57  Score=32.83  Aligned_cols=31  Identities=16%  Similarity=0.313  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013          196 KEKTGALDEKFSQTEFDLVQSVQQNADLRSK  226 (432)
Q Consensus       196 k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~  226 (432)
                      ..++.....++..+...+....++..++..+
T Consensus       115 r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q  145 (499)
T COG4372         115 RQEREAVRQELAAARQNLAKAQQELARLTKQ  145 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444444444444444443

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=82.62  E-value=38  Score=30.79  Aligned_cols=29  Identities=34%  Similarity=0.510  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          129 LTRLDEQRSELEDKISQLNAEIAAYNEVR  157 (432)
Q Consensus       129 ~~~f~eer~~l~~~i~~l~~~i~~~~~k~  157 (432)
                      +..+..+...+..++..++..++.....+
T Consensus        71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r   99 (188)
T PF03962_consen   71 LEKLQKEIEELEKKIEELEEKIEEAKKGR   99 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44444444444445555555555444333

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=82.61  E-value=29  Score=29.48  Aligned_cols=77  Identities=16%  Similarity=0.280  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013          345 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG  421 (432)
Q Consensus       345 ~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~  421 (432)
                      ++.+.-..+..++.++.....++.......+.........+..-..-+..++.++..+...+..|..+=..-++.|.
T Consensus        53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455566777788888887777777777777777788777778888888889999988888888887666666553

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=82.59  E-value=52  Score=32.40  Aligned_cols=15  Identities=7%  Similarity=0.204  Sum_probs=5.6

Q ss_pred             HHHHHHHHhHHHHHH
Q 014013          379 TEVDAITSKTKFVKE  393 (432)
Q Consensus       379 ~~i~~ie~~~~~~k~  393 (432)
                      +.+..+|.+....+.
T Consensus       251 Kk~kklEKE~~~~k~  265 (309)
T PF09728_consen  251 KKIKKLEKENQTWKS  265 (309)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=82.46  E-value=24  Score=28.31  Aligned_cols=75  Identities=24%  Similarity=0.411  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-------------------chhHHHHHHHHHHHHHHHHHHH
Q 014013          125 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER---E-------------------LPLVQEVDAKVKELRQTIQDLN  182 (432)
Q Consensus       125 iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~---~-------------------~~~i~el~~e~~eLe~~L~~l~  182 (432)
                      ++++|..++.+...+...+..+..++.++.....+   .                   ...+..+..+.+.++.++..+.
T Consensus         3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~   82 (106)
T PF01920_consen    3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLE   82 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567777777777767777776666666554332   1                   1123556666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 014013          183 KHQVSLRTTLNKLKEKT  199 (432)
Q Consensus       183 ~~q~~l~~~~~~~k~e~  199 (432)
                      +....+...+.+++...
T Consensus        83 ~~~~~l~~~l~~~~~~l   99 (106)
T PF01920_consen   83 KQLKYLEKKLKELKKKL   99 (106)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666655555443

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=82.44  E-value=74  Score=34.03  Aligned_cols=20  Identities=25%  Similarity=0.307  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 014013          317 LEAKLIERQGKVEQLDELQQ  336 (432)
Q Consensus       317 l~~ql~~~~~k~~~l~~~~~  336 (432)
                      -+..+..+++..+.|++++.
T Consensus       247 aq~ri~~lE~e~e~L~~ql~  266 (629)
T KOG0963|consen  247 AQQRIVFLEREVEQLREQLA  266 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666655544

>PF14992 TMCO5: TMCO5 family

Probab=82.36  E-value=49  Score=31.93  Aligned_cols=16  Identities=25%  Similarity=0.488  Sum_probs=7.3

Q ss_pred             HHhHHHHHHHHHHHHH
Q 014013          256 MQSFQEKTTTLEVYQK  271 (432)
Q Consensus       256 l~~~q~~~~~l~~~~k  271 (432)
                      ++.++++...++++.+
T Consensus        24 L~ki~~~E~~iq~Le~   39 (280)
T PF14992_consen   24 LQKIQEKEGAIQSLER   39 (280)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444433

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=81.94  E-value=43  Score=30.98  Aligned_cols=20  Identities=35%  Similarity=0.423  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 014013          315 KSLEAKLIERQGKVEQLDEL  334 (432)
Q Consensus       315 ~~l~~ql~~~~~k~~~l~~~  334 (432)
                      ..+++++......+..|..+
T Consensus        54 ~~le~~~~~~~~~~~~~~~~   73 (221)
T PF04012_consen   54 KRLERKLDEAEEEAEKWEKQ   73 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=81.69  E-value=55  Score=32.05  Aligned_cols=59  Identities=15%  Similarity=0.133  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          277 SKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQL  338 (432)
Q Consensus       277 ~~~~~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~  338 (432)
                      ..|++++.....++..+.+   .+......+.....+|..|..+++.++.+...+--..+.+
T Consensus       202 ~dcv~QL~~An~qia~Lse---ELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL  260 (306)
T PF04849_consen  202 LDCVKQLSEANQQIASLSE---ELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEEL  260 (306)
T ss_pred             HHHHHHhhhcchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3345555444444444333   2333333344444456777777777777766665444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=81.67  E-value=30  Score=29.03  Aligned_cols=49  Identities=12%  Similarity=0.242  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Q 014013          345 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQ  400 (432)
Q Consensus       345 ~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~  400 (432)
                      ....++..+.+|...|.....=..++..++       .++...+.++|.=|-..|+
T Consensus        69 ~~~~L~~el~~l~~ry~t~LellGEK~E~v-------eEL~~Dv~DlK~myr~Qi~  117 (120)
T PF12325_consen   69 EVEELEQELEELQQRYQTLLELLGEKSEEV-------EELRADVQDLKEMYREQID  117 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            445555666666666665555555444444       4444444477666654444

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=81.51  E-value=69  Score=33.04  Aligned_cols=91  Identities=16%  Similarity=0.237  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013          150 IAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK---HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK  226 (432)
Q Consensus       150 i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~---~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~  226 (432)
                      +..++.........|+.|+..|--|+.++.+|.-   .|..+..-+++++....+|...-..+-.+...+..-..+|+.-
T Consensus       319 L~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~  398 (527)
T PF15066_consen  319 LQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEA  398 (527)
T ss_pred             HHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHH
Confidence            3333333344566778888888888888887754   3445666777777777777776666666555555555555555


Q ss_pred             hhcCHHHHHHHHHH
Q 014013          227 IVQSPEKLQRTLEE  240 (432)
Q Consensus       227 iv~SPe~Lk~~i~e  240 (432)
                      +...--.|+....+
T Consensus       399 la~tqk~LqEsr~e  412 (527)
T PF15066_consen  399 LANTQKHLQESRNE  412 (527)
T ss_pred             HHHHHHHHHHHHhh
Confidence            54444444444433

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=81.32  E-value=26  Score=31.90  Aligned_cols=45  Identities=22%  Similarity=0.236  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q 014013          197 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI  244 (432)
Q Consensus       197 ~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~  244 (432)
                      .+...+..++.++...+..+..+..   .+...+|+.+.....+....
T Consensus       103 ~eR~~~l~~l~~l~~~~~~l~~el~---~~~~~Dp~~i~~~~~~~~~~  147 (188)
T PF03962_consen  103 EEREELLEELEELKKELKELKKELE---KYSENDPEKIEKLKEEIKIA  147 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHH
Confidence            5556667777777777777776665   55567898887666555443

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=80.47  E-value=95  Score=33.99  Aligned_cols=19  Identities=26%  Similarity=0.358  Sum_probs=8.9

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 014013          121 LLRPIAEDLTRLDEQRSEL  139 (432)
Q Consensus       121 ~ls~iin~~~~f~eer~~l  139 (432)
                      .++.+..++..+..+...+
T Consensus       315 ~~e~l~~~~~~~~~~~~~~  333 (698)
T KOG0978|consen  315 DLESLLDKIQDLISQEAEL  333 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444455555444444

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=80.37  E-value=30  Score=28.11  Aligned_cols=29  Identities=28%  Similarity=0.567  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          126 AEDLTRLDEQRSELEDKISQLNAEIAAYN  154 (432)
Q Consensus       126 in~~~~f~eer~~l~~~i~~l~~~i~~~~  154 (432)
                      +.++..+..++..+...++.++.+-..+.
T Consensus        28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~s   56 (108)
T PF02403_consen   28 VDEIIELDQERRELQQELEELRAERNELS   56 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            33344455555555555444444433333

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=80.34  E-value=46  Score=30.24  Aligned_cols=41  Identities=12%  Similarity=0.193  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013          166 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  206 (432)
Q Consensus       166 el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l  206 (432)
                      .|..-|+.|..+-..|+.....+...-..+..+...+...+
T Consensus        12 dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~   52 (193)
T PF14662_consen   12 DLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQL   52 (193)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444333444433333333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=80.24  E-value=1e+02  Score=34.18  Aligned_cols=40  Identities=18%  Similarity=0.307  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013          169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  208 (432)
Q Consensus       169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~  208 (432)
                      .+..++++++..+......+...+++.....+.|..++..
T Consensus       579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~  618 (717)
T PF10168_consen  579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR  618 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	432
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	1e-22
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-06
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	1e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	4e-04

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D* Length = 250

 Score = 95.6 bits (237), Expect = 1e-22
 Identities = 28/215 (13%), Positives = 65/215 (30%), Gaps = 22/215 (10%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAV-----ITENDL-KNPNPDFVSDLYTRLLIFLDVLH 54
           M    +PR +  EIV  +    +       +T+NDL  NP P+ +  +Y R L  +  + 
Sbjct: 6   METLSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIR 65

Query: 55  EDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRT 114
            +    +       +  P L    +    L + +   +       +F   D++ P A RT
Sbjct: 66  LEHFYMM--PVNSGVMYPHLMEGFLPFSNLVTHLDSFLPICRVN-DFETADILCPKAKRT 122

Query: 115 E-------------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVREREL 161
                         +                 ++  +L     +   ++    +  + + 
Sbjct: 123 SRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182

Query: 162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLK 196
            +       V +L   +  +          +  + 
Sbjct: 183 TVTIPSAVYVAQLYHQVSKIEWEYECEPGMVKGIH 217

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.0 bits (187), Expect = 8e-15
 Identities = 40/255 (15%), Positives = 103/255 (40%), Gaps = 21/255 (8%)

Query: 122  LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 181
            +    E   +L  ++ +++ ++  L  ++      R++        D K+K++   I  +
Sbjct: 936  IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995

Query: 182  NKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 241
                  L      L+E+   L    ++ E    +  +    L++K      +L+  L+++
Sbjct: 996  EDQNNKLTKERKLLEERVSDLTTNLAEEE----EKAKNLTKLKNKHESMISELEVRLKKE 1051

Query: 242  KSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYK 301
            +  R+E            ++         + + ++  Q A+++A L         E++ +
Sbjct: 1052 EKSRQELEKI-------KRKLEGESSDLHEQIAELQAQIAELKAQL------AKKEEELQ 1098

Query: 302  SLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEME 361
            +  ARL D+     +   K+ E +     + +LQ+ LE E+  +++ A +   ++  E+E
Sbjct: 1099 AALARLEDETSQKNNALKKIRELE---SHISDLQEDLESEKAARNK-AEKQKRDLSEELE 1154

Query: 362  SKRQDLEARQKKVEA 376
            + + +LE        
Sbjct: 1155 ALKTELEDTLDTTAT 1169

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 48/302 (15%), Positives = 122/302 (40%), Gaps = 33/302 (10%)

Query: 126  AEDLTRLDEQRSE-LEDKISQLNAEIAAYNEVRERELPLVQEVDAKV---KELRQTIQDL 181
               L  L+E+R   + D I    A+   Y   R+      Q++++       +R  +   
Sbjct: 777  TGVLAHLEEERDLKITDVIIAFQAQCRGYL-ARKAFAKRQQQLESIFCIQYNVRSFMNVX 835

Query: 182  NKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 241
            +   + L   +  L + T   +E  ++ E  L ++ ++     +++ +  +K  +  EEK
Sbjct: 836  HWPWMXLFFXIXPLLKVTRQEEEMQAKDEE-LQRTKERQQKAEAELKELEQKHTQLCEEK 894

Query: 242  KSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYK 301
              ++E+ +   +L      E            +++ +   +M+A +E+       E+  +
Sbjct: 895  NLLQEKLQAETELY----AEAEEMRVRLAAKKQELEEILHEMEARIEE------EEERSQ 944

Query: 302  SLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKE--------RNLKSEDATRAF 353
             L+A         K ++ ++++ + ++E+ +  +Q+L+ E        + ++ +      
Sbjct: 945  QLQAEK-------KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997

Query: 354  ENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 413
            +N KL  E K   LE R   +   + E +        +K    + + EL  + ++  +  
Sbjct: 998  QNNKLTKERKL--LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055

Query: 414  QQ 415
            Q+
Sbjct: 1056 QE 1057

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 122  LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 181
               + E +  L  Q +EL+ ++++   E+ A     E E         K++EL   I DL
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128

Query: 182  NKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 241
             +   S +   NK +++   L E+       L   ++   D  +   +      +  ++K
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELE----ALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 5e-10
 Identities = 63/378 (16%), Positives = 114/378 (30%), Gaps = 119/378 (31%)

Query: 54  HED-DQGQLDFA---ALEQLENP---DLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDL 106
           H D + G+  +     L   E+    +   + VQ      M K +++            +
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-----DMPKSILSKEEI------DHI 54

Query: 107 IR-PDA-TRT-------EDTKMNLLRPIAEDLTRLD----EQRSELEDKISQLNAEIAAY 153
           I   DA + T          +  +++   E++ R++        + E +   +   +  Y
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM--Y 112

Query: 154 NEVRERELPLVQEVDAKVKELRQTIQDLNKHQVS-------LRTTLNKLKE--------- 197
            E R+R              L    Q   K+ VS       LR  L +L+          
Sbjct: 113 IEQRDR--------------LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 198 ----KT-----GALDEKFSQTEFD-----LVQSVQQNADLRSKIVQSPEKLQRTLEEKKS 243
               KT       L  K  Q + D     L      + +   +++Q   KL   ++   +
Sbjct: 159 LGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNWT 214

Query: 244 IREEARDAEKLAMQSFQEKTTTL---EVYQKTLKKMSKQSAQMQAILEQVNSAKSIEK-D 299
            R +     KL + S Q +   L   + Y+  L            +L  V +AK+    +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----------LVLLNVQNAKAWNAFN 263

Query: 300 YKSLKARLNDDVVL----DKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFEN 355
              L  +     +L     K +   L         LD     L  +              
Sbjct: 264 ---LSCK-----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS------LLLK 309

Query: 356 VKLEMESKRQDL--EARQ 371
             L+   + QDL  E   
Sbjct: 310 Y-LDC--RPQDLPREVLT 324

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 56/358 (15%), Positives = 106/358 (29%), Gaps = 115/358 (32%)

Query: 38  FVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNC 97
             S  Y   L+ L                        +V++ +    ++        ++C
Sbjct: 238 LKSKPYENCLLVLL-----------------------NVQNAKAWNAFN--------LSC 266

Query: 98  PMNFTLKDLIRPDATRTEDTK-MNLLRPIAEDLTRLDEQRSEL-EDKISQLNAEIAAYNE 155
            +  T         TR    +  + L         LD     L  D++  L   +  Y +
Sbjct: 267 KILLT---------TR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---LLKYLD 312

Query: 156 VRERELP---------LVQEVDAKVKELRQTIQ-----DLNKHQVSLRTTLNKLKEKTGA 201
            R ++LP          +  +   +++   T       + +K    + ++LN L+     
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-- 370

Query: 202 LDEKFSQTEFDLV---QSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQS 258
             + F      L     S          I   P  L   +       +      KL   S
Sbjct: 371 YRKMF----DRLSVFPPSA--------HI---PTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 259 FQEK-----TTTL-EVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKS---------- 302
             EK     T ++  +Y +   K+  + A  ++I++  N  K+ + D             
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 303 -----LKARLNDD-------VVLDKS-LEAKLIE----RQGKVEQLDELQQQLEKERN 343
                LK   + +       V LD   LE K+             L+ L QQL+  + 
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKP 532

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 50/276 (18%), Positives = 98/276 (35%), Gaps = 68/276 (24%)

Query: 180 DLNKHQVSLRTTLNKLKEK-TGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 238
           +  +HQ   +  L+  ++      D K  Q   D+ +S+    ++   I+ S + +  TL
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEID-HIIMSKDAVSGTL 65

Query: 239 EEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ--MQAILEQVNSAKSI 296
                              +   K    E+ QK ++++ + + +  M  I  +      +
Sbjct: 66  ---------------RLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 297 EKDYKSLKARL-NDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL---------KS 346
            + Y   + RL ND+ V  K      + R     +L +   +L   +N+         K+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAK----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 347 ---EDATRAFENVKLEME------------SKRQDLEARQK---KVEAVVTEVDAITSKT 388
               D   +++ V+ +M+            S    LE  QK   +++   T     +S  
Sbjct: 165 WVALDVCLSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 389 KFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 424
           K    S  A+L+ L      +  K   Y N    LL
Sbjct: 224 KLRIHSIQAELRRL------LKSK--PYENC---LL 248

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 46/273 (16%), Positives = 85/273 (31%), Gaps = 86/273 (31%)

Query: 26  ITENDLKNPNPDFVSDLYTRLLIF----------LDVLHEDDQGQLDFAALEQLEN---- 71
           I E+ L    P     ++ RL +F          L ++  D         + +L      
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 72  -----------PDLHVR-SVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRP---------- 109
                      P +++   V++   Y++ + +V   N P  F   DLI P          
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 110 -----DATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLV 164
                +    E  +M L R +  D  R       LE KI             R       
Sbjct: 478 GHHLKNIEHPE--RMTLFRMVFLDF-RF------LEQKI-------------RHDSTAW- 514

Query: 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 224
                    +  T+Q L  ++  +    N         D K+ +    ++  + +     
Sbjct: 515 ----NASGSILNTLQQLKFYKPYI--CDN---------DPKYERLVNAILDFLPKIE--- 556

Query: 225 SKIVQSPEK--LQRTL-EEKKSIREEA-RDAEK 253
             ++ S     L+  L  E ++I EEA +  ++
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 36/231 (15%), Positives = 90/231 (38%), Gaps = 30/231 (12%)

Query: 113  RTEDTKMNLLRPIAEDLTRLDEQRSELEDK-ISQLNAEIAAYNEVRERELPLVQEVDAKV 171
            R    +++  R +   +      R  +  + + +L  E  +    ++        ++ K+
Sbjct: 875  RGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLH----IGLENKI 930

Query: 172  KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSP 231
             +L++ I + NK   SL   +N L+       EK       L  S ++  +  ++++   
Sbjct: 931  MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990

Query: 232  EKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVN 291
            E++ +  +E    + E +  E+                     K   ++ Q+ + L++ N
Sbjct: 991  EEIAKLRKELHQTQTEKKTIEEW------------------ADKYKHETEQLVSELKEQN 1032

Query: 292  SAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER 342
                ++ + + L  R++D     K +   + ++   VE+  +L+  L  ER
Sbjct: 1033 --TLLKTEKEELNRRIHD---QAKEITETMEKKL--VEETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 41/243 (16%), Positives = 96/243 (39%), Gaps = 20/243 (8%)

Query: 138  ELEDKISQLNAEIAAYNEVRERELPLVQE---VDAKVKELRQTIQDLNKHQVSLRTTLNK 194
             L+  +            +RE +  ++Q+            +T++ +   Q   R  + K
Sbjct: 844  ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK 903

Query: 195  LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKL 254
             + K   ++ +       + +  + +  L +KI+Q   K+    +E KS+ E+  + E  
Sbjct: 904  RELKKLKIEAR------SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE-- 955

Query: 255  AMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLD 314
                    +T  E  +  ++++     + +    +V    S++++   L+  L+      
Sbjct: 956  -----ITYSTETEKLRSDVERLRMSEEEAKNATNRV---LSLQEEIAKLRKELHQTQTEK 1007

Query: 315  KSLEAKLIERQGKVEQL-DELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKK 373
            K++E    + + + EQL  EL++Q    +  K E   R  +  K   E+  + L    K+
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067

Query: 374  VEA 376
            +E 
Sbjct: 1068 LEL 1070

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 34/242 (14%), Positives = 85/242 (35%), Gaps = 24/242 (9%)

Query: 131  RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 190
             L E +S +  K  +       Y+   +  + L       + +         K       
Sbjct: 861  MLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL------KKLKIEAR 914

Query: 191  TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARD 250
            ++ + K+    L+ K  Q +  + +  ++   L  K+           E+ +S  E  R 
Sbjct: 915  SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974

Query: 251  AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDD 310
            +E+ A ++   +  +L+      ++++K   ++     +    K+IE+     K      
Sbjct: 975  SEEEA-KNATNRVLSLQ------EEIAKLRKELHQTQTEK---KTIEEWADKYKHETEQ- 1023

Query: 311  VVLDKSLEAKLIERQGKVEQ-LDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEA 369
                  L ++L E+   ++   +EL +++  +    +E   +       ++E    D   
Sbjct: 1024 ------LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077

Query: 370  RQ 371
            R 
Sbjct: 1078 RY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 33/254 (12%), Positives = 88/254 (34%), Gaps = 21/254 (8%)

Query: 163  LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 222
            +V++    +++    +Q L +  +        L+E    + +K  +    L +       
Sbjct: 830  VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGW--LARVHYHRTL 887

Query: 223  LRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQ------EKTTTLEVYQKTLKKM 276
                 +Q   +      E K ++ EAR  E+             +    ++   K  K +
Sbjct: 888  KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947

Query: 277  SKQSAQMQAILEQVNSA-KSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQ 335
             ++   ++          +S  +  +  +    +      SL+ ++ + + ++ Q    +
Sbjct: 948  LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007

Query: 336  QQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDA-ITSKTKFVKES 394
            + +E+             +  K E E    +L+ +   ++    E++  I  + K + E+
Sbjct: 1008 KTIEEWA-----------DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056

Query: 395  GAAKLQELASKAEE 408
               KL E   + E 
Sbjct: 1057 MEKKLVEETKQLEL 1070

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 24/178 (13%), Positives = 62/178 (34%), Gaps = 11/178 (6%)

Query: 101 FTLKDLIRPDATRTEDTKMN-LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER 159
             L+ +     T+    K    + P       +D   S LE    +    +    + +++
Sbjct: 816 SELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKK 875

Query: 160 ELPLVQEVD---------AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTE 210
              L+Q+ +         A  K +     +      +++  L  L+   G       Q+ 
Sbjct: 876 IAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSN 935

Query: 211 FDLVQSVQQNADLR-SKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLE 267
            DL+  + Q  +L  + + +  E+      ++ +  + + +  K  + +  E+   +E
Sbjct: 936 SDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 993

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 36/272 (13%), Positives = 80/272 (29%), Gaps = 25/272 (9%)

Query: 105  DLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVREREL--- 161
            DL  P                   +      R  +   +  ++  I   N    +     
Sbjct: 1830 DLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQ 1889

Query: 162  ------PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQ 215
                    +  ++  V  + +    L + Q+ L   L KL++    + +          +
Sbjct: 1890 NYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRE 1949

Query: 216  SVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKK 275
               +N     K+ Q  +  Q    ++K  RE     +    +   +K       +K    
Sbjct: 1950 LDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPT 2009

Query: 276  MSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQ 335
               +              + +E     LK + ++ V    +LE  +   + +   L    
Sbjct: 2010 GPLREE-----------VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET 2058

Query: 336  QQLEKERNL---KSEDATRAFENVKLEMESKR 364
            +Q++ E +    K + +    +N  L  E  R
Sbjct: 2059 EQIKTESSKVKNKVDRSIALLDN--LNSERGR 2088

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	432
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	100.0
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.76
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.96
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.93
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.34
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	96.17
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.88
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	95.85
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	95.59
2ve7_A	315	Kinetochore protein HEC1, kinetochore protein SPC;	95.52
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.0
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.22
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.15
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	93.61
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.6
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	93.5
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	93.09
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.4
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	92.03
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	91.83
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	91.45
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	91.14
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	91.05
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	91.04
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	90.77
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	90.64
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	90.42
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	90.03
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	89.43
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	89.41
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	89.4
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	89.05
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	88.95
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	88.23
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.13
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	87.94
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	87.76
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	87.25
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	86.55
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	86.2
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	84.68
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	84.58
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	83.82
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	83.55
3bas_A	89	Myosin heavy chain, striated muscle/general contro	83.1
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	82.95
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	80.99
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	80.61
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	80.39
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	80.28
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	80.27

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*

Probab=100.00  E-value=9.3e-37  Score=286.68  Aligned_cols=206  Identities=19%  Similarity=0.258  Sum_probs=156.0

Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCcC-----CCChhhc-CCCChhHHHHHHHHHH-HHhccCCCCchhhhcHHHhhcCCCch
Q 014013            1 MSKFDYPRLSATEIVTILTETEIA-----VITENDL-KNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPD   73 (432)
Q Consensus         1 ms~~~fP~l~~~eIv~~L~~~~~~-----~~t~~dl-~kPt~~~v~~ly~~~l-~~~~~~~~~~~~~~~~~~~~~~~~pe   73 (432)
                      ||+|+||+|+++|||+||++|||+     +||++|| .||||++|++||++|| .+||++.++.. ++  +....++||+
T Consensus         6 ms~~~FP~L~~~eIv~~L~~~~i~~~~~~n~t~~DL~~~Ptp~~v~~iy~~~l~~~~g~~~e~~~-~~--~~~~~~~~pe   82 (250)
T 2ve7_C            6 METLSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFY-MM--PVNSGVMYPH   82 (250)
T ss_dssp             ---CCCCCCCHHHHHHHHHHHTCCHHHHHTCCGGGTSSSCCHHHHHHHHHHHHHHHHCCCSGGGS-CC--CSSCCCSCGG
T ss_pred             cccCCCCCCCHHHHHHHHHHcCCCCccccCCCHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHh-cc--chhhcccChh
Confidence            899999999999999999999995     5899999 8999999999999999 89999866543 22  2335678999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013           74 LHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY  153 (432)
Q Consensus        74 ~~~~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~  153 (432)
                      +|.+|+++++||++|++||..|||+ |||++||++|+|+||+    ++||++|| |.+||+++...          ++++
T Consensus        83 l~~~si~~l~~~r~l~~~l~~~gv~-DFtl~DL~kP~~~Rt~----~iLSalIN-F~~FRE~~~~~----------~~e~  146 (250)
T 2ve7_C           83 LMEGFLPFSNLVTHLDSFLPICRVN-DFETADILCPKAKRTS----RFLSGIIN-FIHFREACRET----------YMEF  146 (250)
T ss_dssp             GGTTTHHHHHHHHHHHHHHHHTTCC-CCCHHHHHSCCHHHHH----HHHHHHHH-HHHHHHHHHHH----------HHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCC-CCcHhHhcCCchHHHH----HHHHHHHH-HHHHHHHHHHH----------HHHH
Confidence            9999999999999999999999999 9999999999999999    99999999 99999999865          3344


Q ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHH
Q 014013          154 NEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK  233 (432)
Q Consensus       154 ~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~  233 (432)
                      -.+.+....+++++..++++++++|.+++....+..              ..+.-....+.++...+.+++-...++|+.
T Consensus       147 ~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~--------------te~~p~~k~~~qly~~vt~i~w~~~~~~~~  212 (250)
T 2ve7_C          147 LWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT--------------TVTIPSAVYVAQLYHQVSKIEWEYECEPGM  212 (250)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHSCC---------------------------CTTTHHHHHHHHHHHCCEECSCCTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------hhhhHHHHHHHHHHHHHhhceeecccCcch
Confidence            444445555666777777777777766666544333              333333444555667777777777778877


Q ss_pred             HHHHHH
Q 014013          234 LQRTLE  239 (432)
Q Consensus       234 Lk~~i~  239 (432)
                      +++.+.
T Consensus       213 i~g~~~  218 (250)
T 2ve7_C          213 VKGIHH  218 (250)
T ss_dssp             EEEEC-
T ss_pred             hceeee
Confidence            776553

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.76  E-value=0.00013  Score=67.87  Aligned_cols=67  Identities=13%  Similarity=0.154  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013          351 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG  421 (432)
Q Consensus       351 ~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~  421 (432)
                      ..+..+...+..+...+......+......+..+...+..+    ..++..+...+..+...+..+.+.|.
T Consensus       216 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~L~  282 (284)
T 1c1g_A          216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL----EDELYAQKLKYKAISEELDHALNDMT  282 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33344444444444444444444444444444444444444    44555666666666666666555543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.96  E-value=2.8e-05  Score=88.31  Aligned_cols=58  Identities=12%  Similarity=0.126  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 014013          163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN  220 (432)
Q Consensus       163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~  220 (432)
                      .+..+..+...++..+.........+...+..+..+...+..++.++...+.....++
T Consensus       886 ~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l  943 (1184)
T 1i84_S          886 KHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS  943 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444333333333333333444444444444444444444443333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.05  E-value=0.11  Score=48.38  Aligned_cols=34  Identities=18%  Similarity=0.035  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 014013          377 VVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF  413 (432)
Q Consensus       377 ~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i  413 (432)
                      +..++..+..+...+...+.   ..+...|.++....
T Consensus       155 ~~~e~~~l~~~r~~l~~~i~---~~lL~~Yerir~~~  188 (256)
T 3na7_A          155 IKETQQIIFKKKEDLVEKTE---PKIYSFYERIRRWA  188 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhC
Confidence            33444444444445555555   56777788887653

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.93  E-value=0.15  Score=47.42  Aligned_cols=113  Identities=11%  Similarity=0.123  Sum_probs=57.6

Q ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 014013          304 KARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ-----LEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV  378 (432)
Q Consensus       304 k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~-----~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~  378 (432)
                      +..+.+....+..++..+.....++.+.+.++..     --......++.+..++..+..+...+...++..+..++...
T Consensus        52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~  131 (256)
T 3na7_A           52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK  131 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333344444444444444444444321     11233334445555555555555555556665666666666


Q ss_pred             HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014013          379 TEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQY  416 (432)
Q Consensus       379 ~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y  416 (432)
                      ..+..++......+......+..+..+...|......+
T Consensus       132 ~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l  169 (256)
T 3na7_A          132 KEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDL  169 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666555555544433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.34  E-value=0.49  Score=41.60  Aligned_cols=70  Identities=20%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          129 LTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA  201 (432)
Q Consensus       129 ~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~e  201 (432)
                      +..+++.-......+.+++.+++++..--.+   ...++++++..++..+..|......+..++..++.+...
T Consensus        12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrE---LE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~   81 (189)
T 2v71_A           12 TAYWKELSMKYKQSFQEARDELVEFQEGSRE---LEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH   81 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444555555555555432211   112344444444555555544444444444444444333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=96.17  E-value=0.21  Score=39.54  Aligned_cols=90  Identities=14%  Similarity=0.178  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 014013          139 LEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ  218 (432)
Q Consensus       139 l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~  218 (432)
                      +..++..|+.+.+....+.......+.....++..++.++..|++....+..+++.+.........+++........+..
T Consensus         7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~   86 (101)
T 3u1c_A            7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666777788888888999999999999999999999999999999999988888888888


Q ss_pred             HHHHHHhhhh
Q 014013          219 QNADLRSKIV  228 (432)
Q Consensus       219 e~~~L~~~iv  228 (432)
                      ++..|..+|.
T Consensus        87 ev~~L~Rriq   96 (101)
T 3u1c_A           87 EVASLNRRIQ   96 (101)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888887763

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.88  E-value=2.4  Score=52.43  Aligned_cols=6  Identities=33%  Similarity=0.600  Sum_probs=2.4

Q ss_pred             HHHHHH
Q 014013           42 LYTRLL   47 (432)
Q Consensus        42 ly~~~l   47 (432)
                      +|..|+
T Consensus      1766 l~~~Fi 1771 (3245)
T 3vkg_A         1766 LYKYFT 1771 (3245)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            344443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=95.85  E-value=0.35  Score=38.19  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 014013          139 LEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ  218 (432)
Q Consensus       139 l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~  218 (432)
                      +..++..|+.+.+....+.......+.....++..++.++..+++....+..+++.+.........+++........+..
T Consensus         7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~   86 (101)
T 3u59_A            7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666777778888888899999999999999999999999999999999999888898899


Q ss_pred             HHHHHHhhhh
Q 014013          219 QNADLRSKIV  228 (432)
Q Consensus       219 e~~~L~~~iv  228 (432)
                      ++..|..+|.
T Consensus        87 evasLnRriq   96 (101)
T 3u59_A           87 EVASLNRRIQ   96 (101)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887763

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*

Probab=95.59  E-value=0.019  Score=53.35  Aligned_cols=35  Identities=14%  Similarity=0.295  Sum_probs=22.5

Q ss_pred             HHHhhcCcCCCChhhcCCCChhHHHHHHHHHHHHh
Q 014013           16 TILTETEIAVITENDLKNPNPDFVSDLYTRLLIFL   50 (432)
Q Consensus        16 ~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l~~~   50 (432)
                      ..+..||+++||-.||.+|+|.-+..+...++.|+
T Consensus        99 ~~l~~~gv~DFtl~DL~kP~~~Rt~~iLSalINF~  133 (250)
T 2ve7_C           99 SFLPICRVNDFETADILCPKAKRTSRFLSGIINFI  133 (250)
T ss_dssp             HHHHHTTCCCCCHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCcHhHhcCCchHHHHHHHHHHHHHH
Confidence            34555666667777777777776666666666554

>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*

Probab=95.52  E-value=0.5  Score=45.31  Aligned_cols=166  Identities=13%  Similarity=0.149  Sum_probs=86.9

Q ss_pred             HHHHHHHhhcCcC-CCChhhcCCCChhHHHHHHHHHHHHhccC----CCCchhhhcHHHhhcCCCc--------------
Q 014013           12 TEIVTILTETEIA-VITENDLKNPNPDFVSDLYTRLLIFLDVL----HEDDQGQLDFAALEQLENP--------------   72 (432)
Q Consensus        12 ~eIv~~L~~~~~~-~~t~~dl~kPt~~~v~~ly~~~l~~~~~~----~~~~~~~~~~~~~~~~~~p--------------   72 (432)
                      .+|..+|...|++ .+|...|..||.--...||.+++.+++-.    ......-++ +.+-.+.||              
T Consensus        19 ~~i~~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~idp~~~~~~~k~eeev~-~~lK~L~YP~~isKS~L~a~g~p   97 (315)
T 2ve7_A           19 RQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVP-RIFKDLGYPFALSKSSMYTVGAP   97 (315)
T ss_dssp             HHHHHHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTTTSTTCCCCSSCHHHHHH-HHHHHTTCSSCCCHHHHHTTTST
T ss_pred             HHHHHHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHH-HHHHHcCCCceeCHHHhcCCCCC
Confidence            6788889998985 39999999999999999999998666511    001111111 122333333              


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccc---CC---CCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013           73 DLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLI---RP---DATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQL  146 (432)
Q Consensus        73 e~~~~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~---~P---~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l  146 (432)
                      .....-++.|.+..-+.++...+... +-.+.|=.   .+   +..-..    -++.++..-|..|-.......+.-.++
T Consensus        98 HsWp~~Lg~L~WLvel~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~----~~~~y~~~~Y~~fl~~~d~~~~~~~e~  172 (315)
T 2ve7_A           98 HTWPHIVAALVWLIDCIKIHTAMKES-SPLFDDGQPWGEETEDGIMHNK----LFLDYTIKCYESFMSGADSFDEMNAEL  172 (315)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHC-C---------CCBCTTSCBSHH----HHHHHHHHHHHHHHHTCSCCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhhhc-cccccchhcccccccccchHHH----HHHHHHHHHHHHHHhCCcchhHHHHHH
Confidence            22344566666666655555443111 11111100   00   011122    366677776777766442222222233


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          147 NAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV  186 (432)
Q Consensus       147 ~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~  186 (432)
                      ...+.+..   ......++.+.++++.|+.++.+|.+...
T Consensus       173 ~~~~~~~~---n~~~~eie~L~~~~~~L~eEi~~Le~~~e  209 (315)
T 2ve7_A          173 QSKLKDLF---NVDAFKLESLEAKNRALNEQIARLEQERS  209 (315)
T ss_dssp             HHHHHHHH---TCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322222   22345667777777777777777755433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.05  E-value=9.9  Score=47.19  Aligned_cols=14  Identities=7%  Similarity=0.157  Sum_probs=10.0

Q ss_pred             CChhHHHHHHHHHH
Q 014013           34 PNPDFVSDLYTRLL   47 (432)
Q Consensus        34 Pt~~~v~~ly~~~l   47 (432)
                      ||++-+-..|..-+
T Consensus      1761 dt~~~l~~~Fi~rv 1774 (3245)
T 3vkg_A         1761 DSEEELYKYFTSQV 1774 (3245)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            57777777777665

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.00  E-value=0.82  Score=51.17  Aligned_cols=53  Identities=9%  Similarity=0.155  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHH
Q 014013          317 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEA  369 (432)
Q Consensus       317 l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~  369 (432)
                      |+..+..+...++++.+..+.+++......++++.++..|+.+...+.+..+.
T Consensus       989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A          989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444433333333344445555555555444444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.15  E-value=1.4  Score=49.19  Aligned_cols=54  Identities=17%  Similarity=0.119  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH
Q 014013          193 NKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIRE  246 (432)
Q Consensus       193 ~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~  246 (432)
                      ..++..+..|..++.++...+...+.+...|...+..-.+.+...+.+|+..++
T Consensus       917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~  970 (1080)
T 2dfs_A          917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE  970 (1080)
T ss_dssp             ----------------------------------CHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344455666677777777777666667666666655444555555555544443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.61  E-value=1.6  Score=36.04  Aligned_cols=76  Identities=12%  Similarity=0.150  Sum_probs=42.8

Q ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 014013          300 YKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVE  375 (432)
Q Consensus       300 ~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie  375 (432)
                      +...+..+.+....+..|+..+..+..+...|+..+..........+..++..+..|..+...+..+++..-.+..
T Consensus        33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq  108 (131)
T 3tnu_A           33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK  108 (131)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555666666667777777777666666666666655556656666666666666666666555555444444

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.60  E-value=1  Score=33.71  Aligned_cols=47  Identities=23%  Similarity=0.357  Sum_probs=25.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013          162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  208 (432)
Q Consensus       162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~  208 (432)
                      -.++++..+|..|.++..++......+..+...++.+...+..+|..
T Consensus        27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~   73 (81)
T 2jee_A           27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=93.50  E-value=3.3  Score=35.52  Aligned_cols=65  Identities=12%  Similarity=0.125  Sum_probs=31.8

Q ss_pred             hHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Q 014013          343 NLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE  407 (432)
Q Consensus       343 ~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~  407 (432)
                      ...+.++..++..|..+.+...........+.-.....+..+|.+.+.+.-+..-+++.+...|.
T Consensus        89 se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e  153 (168)
T 3o0z_A           89 SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE  153 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            33444556666666666655554444444444444455555555444443333344444444443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.09  E-value=2.3  Score=34.92  Aligned_cols=72  Identities=14%  Similarity=0.225  Sum_probs=40.7

Q ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 014013          304 KARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVE  375 (432)
Q Consensus       304 k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie  375 (432)
                      +..+++....+..|+..+..+..+...|+..+..........+..++.++..|..+......+++..-.+..
T Consensus        35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq  106 (129)
T 3tnu_B           35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ  106 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            334444444455666666666666666666655555555555566666666666666655555555444444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.40  E-value=3.9  Score=33.53  Aligned_cols=91  Identities=10%  Similarity=0.155  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013          130 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT  209 (432)
Q Consensus       130 ~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~  209 (432)
                      ++..++.....+.+..+...+......+.........+..+...|...|..-..........+..+...+.+|..+|.++
T Consensus         9 ~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el   88 (129)
T 2fxo_A            9 AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM   88 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444544444444444444333344444444444444444444444444444555555555555555554


Q ss_pred             HHHHHHHHHHH
Q 014013          210 EFDLVQSVQQN  220 (432)
Q Consensus       210 ~~~l~~l~~e~  220 (432)
                      ...+......+
T Consensus        89 ~~rleeeee~~   99 (129)
T 2fxo_A           89 NKRLEDEEEMN   99 (129)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444433333

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=92.03  E-value=1.9  Score=32.23  Aligned_cols=67  Identities=18%  Similarity=0.304  Sum_probs=52.0

Q ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 014013          157 RERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL  223 (432)
Q Consensus       157 ~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L  223 (432)
                      .+.....++.++.+|..|+.++..++.....-..+...++.+...+...|.-.-+++..+++..++|
T Consensus         8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL   74 (79)
T 3cvf_A            8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL   74 (79)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            3445567788888999999999999988888888888888888777777777777777777777665

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.98  E-value=2.1  Score=32.02  Aligned_cols=48  Identities=19%  Similarity=0.304  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013          177 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  224 (432)
Q Consensus       177 ~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~  224 (432)
                      ++..+-....-+.-+++++|.++..+....+++......+..++..|+
T Consensus        14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk   61 (81)
T 2jee_A           14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK   61 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            333333333333333333444443333333333333333333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.83  E-value=4.1  Score=42.08  Aligned_cols=52  Identities=10%  Similarity=0.071  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 014013          169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN  220 (432)
Q Consensus       169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~  220 (432)
                      .+.+.++.++....+...+....++.++.+..++..++++....+.+++++.
T Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~  567 (597)
T 3oja_B          516 ERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQET  567 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHH
Confidence            3333333333333333333334444444444444444444444444333333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=91.45  E-value=4  Score=31.68  Aligned_cols=84  Identities=13%  Similarity=0.179  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013          142 KISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA  221 (432)
Q Consensus       142 ~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~  221 (432)
                      .+..+..+=..+.......+..-..+..++..++.+...+...-..+-.+++.++-+..++...+.++...+.-.....+
T Consensus        12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd   91 (96)
T 3q8t_A           12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD   91 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333334444555666666666666666666667777777777777777777777777777777777


Q ss_pred             HHHh
Q 014013          222 DLRS  225 (432)
Q Consensus       222 ~L~~  225 (432)
                      +|+.
T Consensus        92 kL~K   95 (96)
T 3q8t_A           92 KLKK   95 (96)
T ss_dssp             HHHT
T ss_pred             Hhhc
Confidence            7764

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=91.05  E-value=4.3  Score=31.30  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYN  154 (432)
Q Consensus       122 ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~  154 (432)
                      +..+-++|+.|-+.-..++..+..|..++..+.
T Consensus        11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~   43 (93)
T 3s4r_A           11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLK   43 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445556666666665555555555555555444

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=91.04  E-value=7.5  Score=34.03  Aligned_cols=94  Identities=10%  Similarity=0.027  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 014013          317 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA  396 (432)
Q Consensus       317 l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e  396 (432)
                      |+.+...+...++.|+.+......+...-+..++..+..|+.....+...+-..+...+..+........-..+    ++
T Consensus        61 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD----~e  136 (189)
T 2v71_A           61 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLED----FE  136 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH----HH
Confidence            33444444444444444444444444434444445555555544444433333333333333333322222223    34


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 014013          397 AKLQELASKAEEIVEKFQ  414 (432)
Q Consensus       397 ~ei~~~~~~~~~L~~~i~  414 (432)
                      ...+.+...-.-|.+.+.
T Consensus       137 ~kln~aiEr~alLE~El~  154 (189)
T 2v71_A          137 QRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444444444

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=90.77  E-value=4  Score=30.56  Aligned_cols=70  Identities=17%  Similarity=0.203  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013          140 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT  209 (432)
Q Consensus       140 ~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~  209 (432)
                      ..++..|+.+.+....+.......+.+.......++.++..|++....+..+++.+..+......+|+..
T Consensus         5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea   74 (81)
T 1ic2_A            5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666555555555556666666777777777777777777777777777777666666654

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=90.64  E-value=4.7  Score=31.12  Aligned_cols=69  Identities=14%  Similarity=0.113  Sum_probs=40.1

Q ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013          154 NEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  224 (432)
Q Consensus       154 ~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~  224 (432)
                      +.+.+.--..|..|++.|..|+.++..+.....  .....-|...+..+...|..+...-..+.-++++|.
T Consensus        15 NdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~   83 (93)
T 3s4r_A           15 NDRFANLIDKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA   83 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444567788889999998888765432  233344555555555555555555555555444433

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=90.42  E-value=3.5  Score=30.15  Aligned_cols=62  Identities=18%  Similarity=0.265  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 014013          162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL  223 (432)
Q Consensus       162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L  223 (432)
                      ..++.++.+|..|+.++..++.....-..+....+.+...+...|.-.-+++..+++..++|
T Consensus         7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL   68 (72)
T 3cve_A            7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            34567777888888888888887777777777777777777666666666667666666654

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=90.03  E-value=2.8  Score=34.04  Aligned_cols=92  Identities=9%  Similarity=0.080  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH------HH
Q 014013          320 KLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV------KE  393 (432)
Q Consensus       320 ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~------k~  393 (432)
                      .+..|...++.|+..++....++...+..++.++..|..+.+.-+..+.....+.+.+..+...++....+.      -.
T Consensus        16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~   95 (120)
T 3i00_A           16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLS   95 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            344566666666666666677777788888888888888887766555554555555555555443322211      12


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 014013          394 SGAAKLQELASKAEEIVE  411 (432)
Q Consensus       394 ~~e~ei~~~~~~~~~L~~  411 (432)
                      +.+..-+..+..|.+|..
T Consensus        96 e~E~kAqa~Eerf~KLKe  113 (120)
T 3i00_A           96 EIERKAQANEQRYSKLKE  113 (120)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444455666666543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=89.43  E-value=9.4  Score=32.66  Aligned_cols=64  Identities=11%  Similarity=0.128  Sum_probs=50.2

Q ss_pred             HHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHhhHHHHHHHH
Q 014013          340 KERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAIT----SKTKFVKESGAAKLQELA  403 (432)
Q Consensus       340 ~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie----~~~~~~k~~~e~ei~~~~  403 (432)
                      .+...++..+...++.++.-+..+..++......+-..+++..+++    .++..++..++.|+.+=.
T Consensus        93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H~  160 (168)
T 3o0z_A           93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHK  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677777777777777777777777777788888888888888    889999999998887643

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=89.41  E-value=6.6  Score=39.49  Aligned_cols=51  Identities=24%  Similarity=0.237  Sum_probs=26.9

Q ss_pred             HHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014013          341 ERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV  391 (432)
Q Consensus       341 ~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~  391 (432)
                      ...+.-+++++++..|+.++.....-+...+..|+....+|..||..|+-.
T Consensus       107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq  157 (562)
T 3ghg_A          107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK  157 (562)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555556665665555554444445555555555555555555443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=89.40  E-value=8.9  Score=32.37  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE  204 (432)
Q Consensus       167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~  204 (432)
                      ...+...|...+.+-.............+..+..+|..
T Consensus        56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTa   93 (154)
T 2ocy_A           56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA   93 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=89.05  E-value=8.3  Score=31.53  Aligned_cols=29  Identities=28%  Similarity=0.328  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          129 LTRLDEQRSELEDKISQLNAEIAAYNEVR  157 (432)
Q Consensus       129 ~~~f~eer~~l~~~i~~l~~~i~~~~~k~  157 (432)
                      +..-...|..++.....+..+..++....
T Consensus        29 l~k~e~~r~ele~~~~~l~~Ek~~L~~qL   57 (129)
T 2fxo_A           29 LEKSEARRKELEEKMVSLLQEKNDLQLQV   57 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444455555555555555444433

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=88.95  E-value=5.2  Score=29.90  Aligned_cols=16  Identities=6%  Similarity=0.214  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q 014013          400 QELASKAEEIVEKFQQ  415 (432)
Q Consensus       400 ~~~~~~~~~L~~~i~~  415 (432)
                      +.++..+......+..
T Consensus        51 q~lE~eld~~ee~l~~   66 (81)
T 1ic2_A           51 KGTEDELDKYSESLKD   66 (81)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=88.23  E-value=6.8  Score=29.71  Aligned_cols=75  Identities=16%  Similarity=0.337  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          125 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT  199 (432)
Q Consensus       125 iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~  199 (432)
                      +-+.+..+..++..+...++.++..+++++.|-+.+......++++...|+..+-.+.=....|...++.++.+.
T Consensus         5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl   79 (86)
T 3swk_A            5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI   79 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555566666667777777777777776655555555555555555555544444444444444444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.13  E-value=4.6  Score=33.57  Aligned_cols=7  Identities=14%  Similarity=0.401  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 014013          174 LRQTIQD  180 (432)
Q Consensus       174 Le~~L~~  180 (432)
                      |+.+|..
T Consensus        94 lK~el~~  100 (138)
T 3hnw_A           94 LKHELIA  100 (138)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=87.94  E-value=8.2  Score=30.11  Aligned_cols=77  Identities=12%  Similarity=0.224  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------chhHHHHHHHHHHHHHHHH
Q 014013          122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERE----------------------LPLVQEVDAKVKELRQTIQ  179 (432)
Q Consensus       122 ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~----------------------~~~i~el~~e~~eLe~~L~  179 (432)
                      +...+|+|.++..+...+...+..+..++.++.....+.                      ......+..+.+.++..+.
T Consensus         3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~   82 (107)
T 1fxk_A            3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK   82 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            556778888888888888888888877777776544321                      1122455555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 014013          180 DLNKHQVSLRTTLNKLKEK  198 (432)
Q Consensus       180 ~l~~~q~~l~~~~~~~k~e  198 (432)
                      .+.+....+...+.+++..
T Consensus        83 ~le~~~~~~~~~l~~lk~~  101 (107)
T 1fxk_A           83 TIERQEERVMKKLQEMQVN  101 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555544444433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=87.76  E-value=13  Score=37.49  Aligned_cols=46  Identities=11%  Similarity=0.095  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          295 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEK  340 (432)
Q Consensus       295 e~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~  340 (432)
                      ++++.+..++.++++.=.+++.|+..|..+..++++|+-.+..+-+
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir  159 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR  159 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666666665556677777777777777777777766444

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=87.25  E-value=19  Score=33.48  Aligned_cols=8  Identities=38%  Similarity=0.787  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q 014013          171 VKELRQTI  178 (432)
Q Consensus       171 ~~eLe~~L  178 (432)
                      .++++.+|
T Consensus        46 le~lr~~L   53 (273)
T 3s84_A           46 LRELQQRL   53 (273)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=86.55  E-value=5.3  Score=33.22  Aligned_cols=49  Identities=10%  Similarity=0.238  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 014013          167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQ  215 (432)
Q Consensus       167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~  215 (432)
                      +..+++++..++..|+....++...++..+.+..++..++..+...+.+
T Consensus        80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~  128 (138)
T 3hnw_A           80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK  128 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444433333333

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=86.20  E-value=11  Score=29.82  Aligned_cols=83  Identities=13%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------chhHHHHHHHHHHHHHH
Q 014013          120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERE----------------------LPLVQEVDAKVKELRQT  177 (432)
Q Consensus       120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~----------------------~~~i~el~~e~~eLe~~  177 (432)
                      .-+..++++|.++..+...+...+..+..++.++.....+.                      ...+..|..+.+.++..
T Consensus         6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~   85 (117)
T 2zqm_A            6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVR   85 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            34567788888888888888888888888777776654321                      11235556666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          178 IQDLNKHQVSLRTTLNKLKEKTGAL  202 (432)
Q Consensus       178 L~~l~~~q~~l~~~~~~~k~e~~el  202 (432)
                      +..+.+....+...+.+++....++
T Consensus        86 i~~le~~~~~l~~~l~~lk~~l~~~  110 (117)
T 2zqm_A           86 LNALERQEKKLNEKLKELTAQIQSA  110 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666665555555554433

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=84.68  E-value=11  Score=28.50  Aligned_cols=35  Identities=11%  Similarity=0.047  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013          187 SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA  221 (432)
Q Consensus       187 ~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~  221 (432)
                      .+..++..++.....+.-.-.+++..+..+..|+.
T Consensus        46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~   80 (86)
T 3swk_A           46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIA   80 (86)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334434443333333333333334444444433

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=84.58  E-value=14  Score=29.46  Aligned_cols=69  Identities=13%  Similarity=0.189  Sum_probs=41.8

Q ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013          154 NEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  225 (432)
Q Consensus       154 ~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~  225 (432)
                      ..+.++..+.|..|....+.-+..|.+|.+.+......   ...+...|...-+.+...+.++..+++.|..
T Consensus        37 ~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~---vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G  105 (112)
T 1x79_B           37 KQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRD---VQEQMAVLMQSREQVSEELVRLQKDNDSLQG  105 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence            34556677888888888888888888888877665544   4566677777777888888888888888873

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.55  E-value=7.1  Score=32.17  Aligned_cols=104  Identities=16%  Similarity=0.222  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014013          122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER-------ELPLVQEVDAKVKELRQTIQD-LNKHQVSLRTTLN  193 (432)
Q Consensus       122 ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~-------~~~~i~el~~e~~eLe~~L~~-l~~~q~~l~~~~~  193 (432)
                      .+.-+..|..++.+...+...+..+..++..+......       .+.....+..+..+|.+.|-+ .|+--..-+.+..
T Consensus        20 ~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~   99 (135)
T 2e7s_A           20 QKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKY   99 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444456666665555433333333333333333333       333334444444444444322 2222233344555


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013          194 KLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  225 (432)
Q Consensus       194 ~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~  225 (432)
                      .+..+...+..++.+....+..+..+...|+.
T Consensus       100 ~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~  131 (135)
T 2e7s_A          100 AIEILNKRLTEQLREKDMLLDTLTLQLKNLKK  131 (135)
T ss_dssp             HHHHHHHHHHHTTTHHHHCC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666666655555555543

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=83.10  E-value=13  Score=28.20  Aligned_cols=38  Identities=18%  Similarity=0.175  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013          169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  206 (432)
Q Consensus       169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l  206 (432)
                      ..+..|.++...|..+..........+...+.+|...|
T Consensus        42 ~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l   79 (89)
T 3bas_A           42 EQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEV   79 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=82.95  E-value=15  Score=28.65  Aligned_cols=91  Identities=12%  Similarity=0.145  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          123 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL  202 (432)
Q Consensus       123 s~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el  202 (432)
                      .+|..+...++.+.....++...++..+.....+....+..+..|..++..++.++..+...       +...+....+.
T Consensus         5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~-------L~ea~~kLee~   77 (101)
T 3u1c_A            5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEE-------LHKSEDSLLFA   77 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            44555555666666666666666666655555555444444445545555444444444333       33333333333


Q ss_pred             HHHhhhhHHHHHHHHHHH
Q 014013          203 DEKFSQTEFDLVQSVQQN  220 (432)
Q Consensus       203 ~~~l~~~~~~l~~l~~e~  220 (432)
                      .......+..+..+...+
T Consensus        78 ek~~~~aE~ev~~L~Rri   95 (101)
T 3u1c_A           78 EENAAKAESEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333444444444444433

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=80.99  E-value=19  Score=28.44  Aligned_cols=91  Identities=21%  Similarity=0.216  Sum_probs=54.0

Q ss_pred             CCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          108 RPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVS  187 (432)
Q Consensus       108 ~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~  187 (432)
                      -|.+.++.    ..      ++..+...-...++.+...+..+++++........    ....+.-|+++..-...-...
T Consensus        15 ~~~~~~~~----~~------ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~----~lE~I~vLkaQv~IY~~DF~a   80 (110)
T 2v4h_A           15 VPRGSHMA----SM------QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI----VMETVPVLKAQADIYKADFQA   80 (110)
T ss_dssp             CCTTCCSS----CC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhHhh----HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcc
Confidence            46666666    33      14444444455555555566666666654443211    223466777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHH
Q 014013          188 LRTTLNKLKEKTGALDEKFSQTEFD  212 (432)
Q Consensus       188 l~~~~~~~k~e~~el~~~l~~~~~~  212 (432)
                      -++..+++..++.+|..++..+...
T Consensus        81 ERadREkl~~eKe~L~~ql~~Lq~q  105 (110)
T 2v4h_A           81 ERHAREKLVEKKEYLQEQLEQLQRE  105 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHhHHHHHHHHHHHHHHH
Confidence            7777777777777776666554433

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=80.39  E-value=18  Score=30.33  Aligned_cols=61  Identities=15%  Similarity=0.207  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013          146 LNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  206 (432)
Q Consensus       146 l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l  206 (432)
                      |+.++..+..+.......+.+...-++.+..++..|+-+...+......++.++..|..+.
T Consensus        73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW  133 (152)
T 3a7p_A           73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW  133 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333334444444555555555555555555555555665555554443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=80.28  E-value=26  Score=29.61  Aligned_cols=102  Identities=23%  Similarity=0.237  Sum_probs=43.0

Q ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 014013          303 LKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEK---ERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVT  379 (432)
Q Consensus       303 ~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~---~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~  379 (432)
                      +...+...|.+++.|+..-.....+-...++++..+..   ++..|.+.+.+....|..++       +..+..+.....
T Consensus        47 LEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~i-------d~lEd~L~~~Ke  119 (155)
T 2efr_A           47 LEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI-------DDLEDELYAQKL  119 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            33344444455555655555555444444444433321   22223333333333222222       222233333333


Q ss_pred             HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 014013          380 EVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQ  415 (432)
Q Consensus       380 ~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~  415 (432)
                      +...+..++...    -.++..+...||.|.+.|..
T Consensus       120 k~~~i~~eLd~t----l~el~~~~~~~~~~~~~~~~  151 (155)
T 2efr_A          120 KYKAISEEMKQL----EDKVEELLSKNYHLENEVAR  151 (155)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHhcccchHHHHHHHHH
Confidence            333333333333    34455556666666665543

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=80.27  E-value=7.4  Score=28.37  Aligned_cols=37  Identities=14%  Similarity=0.068  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013          189 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  225 (432)
Q Consensus       189 ~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~  225 (432)
                      .+++......+.++..+|.+....+..++.+++++++
T Consensus        32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS   68 (72)
T 3nmd_A           32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYRS   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3334444555566666666666666677777777766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	432
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	81.47

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.47  E-value=8.2  Score=28.42  Aligned_cols=36  Identities=8%  Similarity=0.163  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013          122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR  157 (432)
Q Consensus       122 ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~  157 (432)
                      +...+++|..+..+...+...+..+..++.++....
T Consensus         3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl   38 (107)
T d1fxka_           3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKAL   38 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677777776666666777766666665544