Citrus Sinensis ID: 014046

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MGLASVLLEILQKPSMVDVIRELMMLMAPLWIAVIVGVLVGWAWKPKWANLGLMDSSVSISKESHSRTEDDDSTTTFTAFRNFFKFQLPTCISATSDYGIQKDVPSTSNSISPCSSSQAHRRMEQSSFVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALRAYVKERASGASLSRCAYMAQINTKVSADYLRTLQNCTNDLSVVEASDSSEKPGGRNIPKLLIVGGAIALACSIDKGLLTKAVIFGVARRFAKIGRRL
ccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEccccccEEEEEEccccccccEEEEEEEEccccHHHHHHHHcccHHHHHHHccccEEEEEEEccccccEEEEEEEEcccccccccEEEEEEEEEcccEEEEEEEcccccccccccccEEEEEEEEEEEEEEEEccccccccccEEEEEEEEccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccHHHcccccccccccccccccccccccccccccEEEEccEEEEEEEcccccHHHHHHHHHHHHHHcccccc
cHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHcccccccccccHHHHHHHHHHHccccccHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHEEcccccEEEEEEEcccccccEEEEEEEEEccccHHHHHHHHccHHHHHHHHHHHHHHEEEEcccccccEEEEEEEEcccccccccEEEEEEEEccccEEEEEEEccccccccccccEEEEEEEEEEEEEEEccccccccccccEEEEEEEcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHccccHHHHHHHHHHHHHHHcccccc
MGLASVLLEILQKPSMVDVIRELMMLMAPLWIAVIVGVLVGwawkpkwanlglmdssvsiskeshsrtedddsttTFTAFRNFfkfqlptcisatsdygiqkdvpstsnsispcsssqahrrmeqssfvtedDLEHLCRLVeekdggpvwiqmmdrstptmayqawrrdpengppqyrsrtvyedvtpemvrdffwdddsrlkwDDMLIYAStleecpntgtMVVQWVRKfpffcsdreYIIGRRIWESGRsyycvtkgvpytsvprrnkpkrvdlFYSSWYIRAVesrrgdgqltACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALRAYVKErasgaslsrCAYMAQINTKVSADYLRTLQNCTNDLsvveasdssekpggrnipklLIVGGAIALACSIDKGLLTKAVIFGVARRFAKIGRRL
MGLASVLLEILQKPSMVDVIRELMMLMAPLWIAVIVGVLVGWAWKPKWANLGLMDSSVSIskeshsrtedddstTTFTAFRNFFKFQLPTCISATSDYGIQKDVPSTSNSISPCSSSQAHRRMEQSSFVTEDDLEHLCRLveekdggpvwiQMMDRSTPTMAYQAWrrdpengppqyrsrtvyedvtpeMVRDFFWDDDSRLKWDDMLIYASTleecpntgTMVVQWVRKFPFFCSDREYIIGRriwesgrsyycvtkgvpytsvprrnkpkrvdLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALRAYVKErasgaslsrcAYMAQINTKVSADYLRTLQNCTNDLSVveasdssekpggrnIPKLLIVGGAIALACSIDKGLLTKAVIFGVARRFAKIGRRL
MGLASVLLEILQKPSMVDVIRELMMLMAPLWIAVIVGVLVGWAWKPKWANLGLMDSSVSISKESHSRTEDDDSTTTFTAFRNFFKFQLPTCISATSDYGIQKDVPstsnsispcsssQAHRRMEQSSFVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALRAYVKERASGASLSRCAYMAQINTKVSADYLRTLQNCTNDLSVVEASDSSEKPGGRNIPKLLIVGGAIALACSIDKGLLTKAVIFGVARRFAKIGRRL
****SVLLEILQKPSMVDVIRELMMLMAPLWIAVIVGVLVGWAWKPKWANLGLM********************TTFTAFRNFFKFQLPTCISATSDYGI********************************DLEHLCRLVEEKDGGPVWIQMMDR****MAYQAW**************TVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALRAYVKERASGASLSRCAYMAQINTKVSADYLRTLQNCTNDLSVV************NIPKLLIVGGAIALACSIDKGLLTKAVIFGVARRFAKI****
*GLASVLLEILQKPSMVDVIRELMMLMAPLWIAVIVGVLVGWAWKPKWANLGLMDSSVSISKESHSRTEDDDSTTTFTAFRNFFKFQLPT******************************************DLEHLCRLVEE**GGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYCVTKGVPYT**PRRNKPKRVDLFYSSWYIRAVES****GQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALR***********************************************************LLIVGGAIALACSIDKGLLTKAVIFGVARRFAKI****
MGLASVLLEILQKPSMVDVIRELMMLMAPLWIAVIVGVLVGWAWKPKWANLGLMDSSV***************TTTFTAFRNFFKFQLPTCISATSDYGIQKD************************FVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALRAYVKERASGASLSRCAYMAQINTKVSADYLRTLQNCTNDLSV**********GGRNIPKLLIVGGAIALACSIDKGLLTKAVIFGVARRFAKIGRRL
MGLASVLLEILQKPSMVDVIRELMMLMAPLWIAVIVGVLVGWAWKPKWANLGLMDSSVSISKESHSRTEDDDSTTTFTAFRNFFKFQLPTCISA*********************************FVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALRAYVKERA**********************************************GRNIPKLLIVGGAIALACSIDKGLLTKAVIFGVARRFAKI****
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
SSSSSSSSSSSSSiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGLASVLLEILQKPSMVDVIRELMMLMAPLWIAVIVGVLVGWAWKPKWANLGLMDSSVSISKESHSRTEDDDSTTTFTAFRNFFKFQLPTCISATSDYGIQKDVPSTSNSISPCSSSQAHRRMEQSSFVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALRAYVKERASGASLSRCAYMAQINTKVSADYLRTLQNCTNDLSVVEASDSSEKPGGRNIPKLLIVGGAIALACSIDKGLLTKAVIFGVARRFAKIGRRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query432 2.2.26 [Sep-21-2011]
Q8R1R3373 StAR-related lipid transf yes no 0.335 0.388 0.305 1e-08
Q9NQZ5370 StAR-related lipid transf yes no 0.321 0.375 0.304 3e-08
Q9UKL6214 Phosphatidylcholine trans no no 0.460 0.929 0.265 5e-06
P53809214 Phosphatidylcholine trans yes no 0.375 0.757 0.275 9e-06
P02720213 Phosphatidylcholine trans no no 0.372 0.755 0.237 0.0003
P53808214 Phosphatidylcholine trans no no 0.375 0.757 0.247 0.0006
>sp|Q8R1R3|STAR7_MOUSE StAR-related lipid transfer protein 7, mitochondrial OS=Mus musculus GN=Stard7 PE=2 SV=2 Back     alignment and function desciption
 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 144 KDGGPVWIQMMDRSTPTMAYQAWRRDPENGPP--QYRSRTVYEDVTPEMVRDFFWDDDSR 201
           KD    W  +MD+      ++ WRR P  G    QYR    Y DVTP    +   D + R
Sbjct: 138 KDKEEPWEMVMDKKH----FKLWRR-PITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYR 192

Query: 202 LKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRR--IWESGRSYYCVTKG 259
            KWD ++I    +E    +G+ V+ WV  FP+    R+Y+  RR  + +       V++ 
Sbjct: 193 KKWDALVIKLEVIERDAVSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQENNVMVLVSRA 252

Query: 260 VPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDG 293
           V + SVP   +  RV  + S   IR  +S   +G
Sbjct: 253 VEHPSVPESPEFVRVRSYESQMVIRPHKSFDENG 286

Mus musculus (taxid: 10090)
>sp|Q9NQZ5|STAR7_HUMAN StAR-related lipid transfer protein 7, mitochondrial OS=Homo sapiens GN=STARD7 PE=1 SV=2 Back     alignment and function description
>sp|Q9UKL6|PPCT_HUMAN Phosphatidylcholine transfer protein OS=Homo sapiens GN=PCTP PE=1 SV=1 Back     alignment and function description
>sp|P53809|PPCT_RAT Phosphatidylcholine transfer protein OS=Rattus norvegicus GN=Pctp PE=2 SV=2 Back     alignment and function description
>sp|P02720|PPCT_BOVIN Phosphatidylcholine transfer protein OS=Bos taurus GN=PCTP PE=1 SV=1 Back     alignment and function description
>sp|P53808|PPCT_MOUSE Phosphatidylcholine transfer protein OS=Mus musculus GN=Pctp PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
225426534438 PREDICTED: uncharacterized protein LOC10 0.993 0.979 0.721 0.0
359474169427 PREDICTED: uncharacterized protein LOC10 0.967 0.978 0.709 1e-178
255555797428 phosphatidylcholine transfer protein, pu 0.981 0.990 0.715 1e-175
449520962432 PREDICTED: uncharacterized protein LOC10 0.986 0.986 0.694 1e-172
449457564432 PREDICTED: uncharacterized protein LOC10 0.990 0.990 0.690 1e-169
224115516398 predicted protein [Populus trichocarpa] 0.918 0.997 0.658 1e-160
297742463384 unnamed protein product [Vitis vinifera] 0.805 0.906 0.777 1e-160
449456277427 PREDICTED: uncharacterized protein LOC10 0.974 0.985 0.633 1e-154
297836895383 hypothetical protein ARALYDRAFT_892929 [ 0.851 0.960 0.642 1e-149
22135902385 membrane related protein CP5, putative [ 0.888 0.997 0.615 1e-149
>gi|225426534|ref|XP_002278777.1| PREDICTED: uncharacterized protein LOC100247984 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/441 (72%), Positives = 357/441 (80%), Gaps = 12/441 (2%)

Query: 1   MGLASVLLEILQKPSMVDVIRELMMLMAPLWIAVIVGVLVGWAWKPKWANLG--LMDSSV 58
           M L SVLLEIL++P++ DV+ ELMM MAPLWIAV+VGVLVGW WKPKWANLG  ++D S 
Sbjct: 1   MMLVSVLLEILRRPTIGDVLAELMMFMAPLWIAVVVGVLVGWTWKPKWANLGREMLDCSS 60

Query: 59  SISKESHSR-------TEDDDSTTTFTAFRNFFKFQLPTCISATSDYGIQKDVPSTSNSI 111
             S  S +             S +      N  K QLP+CIS   D GI K + + +   
Sbjct: 61  VPSNSSPAPPAASSSTVAAPSSVSASIPCLNSLKLQLPSCISWIGDDGIDKSLMAPTGD- 119

Query: 112 SPCSSSQAHRRMEQSSFVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPE 171
           S CS SQ   + E S  V EDDLEHLC+LVE KDGGP WIQMMDRSTPTM+Y+AWRRDP+
Sbjct: 120 SDCSPSQL--KAENSVVVAEDDLEHLCQLVEVKDGGPAWIQMMDRSTPTMSYKAWRRDPD 177

Query: 172 NGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKF 231
            GPPQYRS T++ED TPE+VRDFFWDD  RLKWDDMLIYA+TLEECP TGTM+V WVRKF
Sbjct: 178 TGPPQYRSSTIFEDATPELVRDFFWDDGFRLKWDDMLIYAATLEECPTTGTMLVHWVRKF 237

Query: 232 PFFCSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRG 291
           PFFCSDREY+IGRRIWESGRSYYCVTKGVP +SVPRRNKP+RVDL+YSSW IRAVES+RG
Sbjct: 238 PFFCSDREYMIGRRIWESGRSYYCVTKGVPCSSVPRRNKPRRVDLYYSSWCIRAVESKRG 297

Query: 292 DGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALRAYVKERASGASLSRCA 351
           DGQLTACEV+LFHHEDMGIPWEIAKLGVRQGMWGAVKK DP LRAY KER SGA+LSR A
Sbjct: 298 DGQLTACEVLLFHHEDMGIPWEIAKLGVRQGMWGAVKKVDPGLRAYQKERGSGAALSRYA 357

Query: 352 YMAQINTKVSADYLRTLQNCTNDLSVVEASDSSEKPGGRNIPKLLIVGGAIALACSIDKG 411
           +MAQINTKVSADYLR+L++  ND S VE   SSEKP GRNIPKLL+VGGAIALACS+D+G
Sbjct: 358 FMAQINTKVSADYLRSLESTNNDSSEVETFGSSEKPMGRNIPKLLVVGGAIALACSLDRG 417

Query: 412 LLTKAVIFGVARRFAKIGRRL 432
           LLTKAVIFGVAR FA+IGRRL
Sbjct: 418 LLTKAVIFGVARSFARIGRRL 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474169|ref|XP_003631410.1| PREDICTED: uncharacterized protein LOC100247984 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255555797|ref|XP_002518934.1| phosphatidylcholine transfer protein, putative [Ricinus communis] gi|223541921|gb|EEF43467.1| phosphatidylcholine transfer protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449520962|ref|XP_004167501.1| PREDICTED: uncharacterized protein LOC101231837 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449457564|ref|XP_004146518.1| PREDICTED: uncharacterized protein LOC101209389 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224115516|ref|XP_002317053.1| predicted protein [Populus trichocarpa] gi|222860118|gb|EEE97665.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297742463|emb|CBI34612.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449456277|ref|XP_004145876.1| PREDICTED: uncharacterized protein LOC101209462 [Cucumis sativus] gi|449507210|ref|XP_004162963.1| PREDICTED: uncharacterized LOC101209462 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297836895|ref|XP_002886329.1| hypothetical protein ARALYDRAFT_892929 [Arabidopsis lyrata subsp. lyrata] gi|297332170|gb|EFH62588.1| hypothetical protein ARALYDRAFT_892929 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22135902|gb|AAM91533.1| membrane related protein CP5, putative [Arabidopsis thaliana] gi|23197608|gb|AAN15331.1| membrane related protein CP5, putative [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2010836385 CP5 "AT1G64720" [Arabidopsis t 0.699 0.784 0.734 9.2e-139
TAIR|locus:2153428449 AT5G54170 "AT5G54170" [Arabido 0.694 0.668 0.623 1.4e-101
TAIR|locus:2094568419 AT3G23080 "AT3G23080" [Arabido 0.956 0.985 0.458 3.8e-101
TAIR|locus:2129790433 AT4G14500 "AT4G14500" [Arabido 0.962 0.960 0.458 2.1e-100
TAIR|locus:505006338440 AT3G13062 "AT3G13062" [Arabido 0.692 0.679 0.302 1.5e-37
TAIR|locus:2012080403 AT1G55960 "AT1G55960" [Arabido 0.648 0.694 0.333 1.7e-36
MGI|MGI:2139090373 Stard7 "START domain containin 0.328 0.380 0.304 1e-08
UNIPROTKB|Q9NQZ5370 STARD7 "StAR-related lipid tra 0.328 0.383 0.302 2.8e-08
UNIPROTKB|Q9UKL6214 PCTP "Phosphatidylcholine tran 0.460 0.929 0.265 3.6e-08
UNIPROTKB|E1C517214 PCTP "Uncharacterized protein" 0.456 0.920 0.245 4.9e-08
TAIR|locus:2010836 CP5 "AT1G64720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1254 (446.5 bits), Expect = 9.2e-139, Sum P(2) = 9.2e-139
 Identities = 227/309 (73%), Positives = 267/309 (86%)

Query:   124 EQSSFVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVY 183
             E++ FVT+DD  HL +LVE KDGGP WIQMMDRSTPT +YQAWRRDPENGPPQYRSRTV+
Sbjct:    84 EKTGFVTDDDFRHLWKLVEVKDGGPCWIQMMDRSTPTFSYQAWRRDPENGPPQYRSRTVF 143

Query:   184 EDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIG 243
             ED TPEMVRDFFWDD+ R KWDDML+Y+STLE C +TGTMVVQWVRKFPFFCSDREYIIG
Sbjct:   144 EDATPEMVRDFFWDDEFRSKWDDMLLYSSTLERCKDTGTMVVQWVRKFPFFCSDREYIIG 203

Query:   244 RRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILF 303
             RRIW++GR +YC+TKGV Y SVPR+NKP+RVDL+YSSW IRAVES+RGDG++T+CEV+LF
Sbjct:   204 RRIWDAGRVFYCITKGVQYPSVPRQNKPRRVDLYYSSWCIRAVESKRGDGEMTSCEVLLF 263

Query:   304 HHEDMGIPWEIAKLGVRQGMWGAVKKFDPALRAYVKERASGASLSRCAYMAQINTKVSAD 363
             HHEDMGIPWEIAKLGVRQGMWGAVKK +P LRAY + +A+GA LS  A MA INTKVSA+
Sbjct:   264 HHEDMGIPWEIAKLGVRQGMWGAVKKIEPGLRAYQRAKAAGAGLSPSAIMAHINTKVSAE 323

Query:   364 YLRTLQNCTNDLSVVEASDSSEKPGGRNIPKLLIVGGAIALACSIDKGLLTKAVIFGVAR 423
                  +      S+ E +   +KP G+NIPK+L+VGGAIALAC++DKGLLTKAVIFGVAR
Sbjct:   324 EFMNERG-----SIAEVT--GDKPTGKNIPKILVVGGAIALACTLDKGLLTKAVIFGVAR 376

Query:   424 RFAKIGRRL 432
             RFA++G+R+
Sbjct:   377 RFARMGKRM 385
GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005773 "vacuole" evidence=IDA
TAIR|locus:2153428 AT5G54170 "AT5G54170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094568 AT3G23080 "AT3G23080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129790 AT4G14500 "AT4G14500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006338 AT3G13062 "AT3G13062" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012080 AT1G55960 "AT1G55960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2139090 Stard7 "START domain containing 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NQZ5 STARD7 "StAR-related lipid transfer protein 7, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKL6 PCTP "Phosphatidylcholine transfer protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C517 PCTP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00000489001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (384 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
cd08870209 cd08870, START_STARD2_7-like, Lipid-binding START 1e-101
cd08911207 cd08911, START_STARD7-like, Lipid-binding START do 9e-13
cd00177193 cd00177, START, Lipid-binding START domain of mamm 2e-10
cd08910207 cd08910, START_STARD2-like, Lipid-binding START do 4e-09
smart00234205 smart00234, START, in StAR and phosphatidylcholine 3e-08
cd08871222 cd08871, START_STARD10-like, Lipid-binding START d 2e-04
>gnl|CDD|176879 cd08870, START_STARD2_7-like, Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information 
 Score =  300 bits (770), Expect = e-101
 Identities = 119/211 (56%), Positives = 152/211 (72%), Gaps = 6/211 (2%)

Query: 129 VTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPE-NGPPQYRSRTVYEDVT 187
           V+E+DL  L + ++E   G  W Q+MD+STP M+YQAWRR P+  G  +Y  R V+ED T
Sbjct: 3   VSEEDLRDLVQELQEGAEGQAWQQVMDKSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCT 62

Query: 188 PEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIW 247
           PE++RDF+WDD+ R KWD+ +I   TLEE   +GT +V+WV+KFPF  SDREY+I RR+W
Sbjct: 63  PELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLW 122

Query: 248 ES-GRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHE 306
           ES  RSY CVTKGVPY SVP R+  KRVD + SS  IRAV+   GDGQ +ACEV  FH+ 
Sbjct: 123 ESDDRSYVCVTKGVPYPSVP-RSGRKRVDDYESSLVIRAVK---GDGQGSACEVTYFHNP 178

Query: 307 DMGIPWEIAKLGVRQGMWGAVKKFDPALRAY 337
           D GIP E+AKL V++GM G +KK + ALR Y
Sbjct: 179 DGGIPRELAKLAVKRGMPGFLKKLENALRKY 209

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of PtdCho to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers. It showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol. Length = 209
>gnl|CDD|176920 cd08911, START_STARD7-like, Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>gnl|CDD|176851 cd00177, START, Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>gnl|CDD|176919 cd08910, START_STARD2-like, Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>gnl|CDD|214575 smart00234, START, in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>gnl|CDD|176880 cd08871, START_STARD10-like, Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
KOG2761219 consensus START domain-containing proteins involve 100.0
cd08870209 START_STARD2_7-like Lipid-binding START domain of 100.0
cd08910207 START_STARD2-like Lipid-binding START domain of ma 100.0
cd08911207 START_STARD7-like Lipid-binding START domain of ma 100.0
cd08871222 START_STARD10-like Lipid-binding START domain of m 100.0
cd08872235 START_STARD11-like Ceramide-binding START domain o 100.0
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 100.0
cd08906209 START_STARD3-like Cholesterol-binding START domain 100.0
cd08904204 START_STARD6-like Lipid-binding START domain of ma 100.0
smart00234206 START in StAR and phosphatidylcholine transfer pro 100.0
cd08905209 START_STARD1-like Cholesterol-binding START domain 100.0
cd08903208 START_STARD5-like Lipid-binding START domain of ma 100.0
cd08867206 START_STARD4_5_6-like Lipid-binding START domain o 99.97
cd08874205 START_STARD9-like C-terminal START domain of mamma 99.97
PF01852206 START: START domain; InterPro: IPR002913 START (St 99.97
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 99.97
cd08914236 START_STARD15-like Lipid-binding START domain of m 99.97
cd08902202 START_STARD4-like Lipid-binding START domain of ma 99.97
cd00177193 START Lipid-binding START domain of mammalian STAR 99.97
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 99.96
cd08913240 START_STARD14-like Lipid-binding START domain of m 99.96
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 99.96
cd08873235 START_STARD14_15-like Lipid-binding START domain o 99.96
cd08907205 START_STARD8-like C-terminal lipid-binding START d 99.94
cd08908204 START_STARD12-like C-terminal lipid-binding START 99.94
cd08909205 START_STARD13-like C-terminal lipid-binding START 99.93
PLN00188 719 enhanced disease resistance protein (EDR2); Provis 99.92
KOG1739611 consensus Serine/threonine protein kinase GPBP [Si 99.77
cd08864208 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand- 99.61
cd08875229 START_ArGLABRA2_like C-terminal lipid-binding STAR 99.28
cd07813138 COQ10p_like Coenzyme Q-binding protein COQ10p and 99.11
cd08866144 SRPBCC_11 Ligand-binding SRPBCC domain of an uncha 98.92
PF11274184 DUF3074: Protein of unknown function (DUF3074) 98.88
cd07819140 SRPBCC_2 Ligand-binding SRPBCC domain of an unchar 98.76
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 98.64
PF03364130 Polyketide_cyc: Polyketide cyclase / dehydrase and 98.21
cd07821140 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), 98.02
PRK10724158 hypothetical protein; Provisional 97.98
cd07817139 SRPBCC_8 Ligand-binding SRPBCC domain of an unchar 97.85
cd08860146 TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom 97.41
cd08861142 OtcD1_ARO-CYC_like N-terminal and C-terminal aroma 97.36
cd07812141 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR 97.02
PF10604139 Polyketide_cyc2: Polyketide cyclase / dehydrase an 97.0
cd07824146 SRPBCC_6 Ligand-binding SRPBCC domain of an unchar 96.74
cd08865140 SRPBCC_10 Ligand-binding SRPBCC domain of an uncha 96.64
cd07822141 SRPBCC_4 Ligand-binding SRPBCC domain of an unchar 96.33
cd08862138 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of 96.25
COG5637217 Predicted integral membrane protein [Function unkn 94.54
cd07818150 SRPBCC_1 Ligand-binding SRPBCC domain of an unchar 94.48
cd07823146 SRPBCC_5 Ligand-binding SRPBCC domain of an unchar 94.09
cd07814139 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand- 92.32
cd07825144 SRPBCC_7 Ligand-binding SRPBCC domain of an unchar 92.0
COG2867146 Oligoketide cyclase/lipid transport protein [Lipid 91.8
KOG3845241 consensus MLN, STAR and related lipid-binding prot 89.46
cd07820137 SRPBCC_3 Ligand-binding SRPBCC domain of an unchar 88.45
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-50  Score=380.72  Aligned_cols=208  Identities=51%  Similarity=0.840  Sum_probs=190.0

Q ss_pred             CCCHHHHHHHHHHHhcC--CCCCCceEEEccCCCCCcEEEEE-eCCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHH
Q 014046          128 FVTEDDLEHLCRLVEEK--DGGPVWIQMMDRSTPTMAYQAWR-RDPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKW  204 (432)
Q Consensus       128 ~vtd~Dl~~~~~~~e~~--~~~~~We~v~dk~~~~~gikVwr-R~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kW  204 (432)
                      .++++|+.+++++++.+  +++.+|+++++    +.++.+|+ |.|.+|+++||+.|+|+|+||+.|+|+++|+|||++|
T Consensus         7 ~vs~~~~~~~~~~~e~~~~~~~~~We~~~~----k~~~~i~~q~~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkW   82 (219)
T KOG2761|consen    7 GVSEEDLPELLDLLEEKACDAGQGWELVMD----KSTPSIWRQRRPKTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRKKW   82 (219)
T ss_pred             cccccchHHHHHhhcccccCcccchhhhcc----cCCceEEEEcccCCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHHHH
Confidence            69999999999999998  66779999999    78899999 6888999999999999999999999999999999999


Q ss_pred             hHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeC-CEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEE
Q 014046          205 DDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESG-RSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYI  283 (432)
Q Consensus       205 D~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d-~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvI  283 (432)
                      |.++.++++||+++.+|++|+||+.|||+|++|||||+.||+|+.+ +.++|++++|+||++|+++++||+..+.|||+|
T Consensus        83 D~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I  162 (219)
T KOG2761|consen   83 DDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLI  162 (219)
T ss_pred             HHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEE
Confidence            9999999999998878999999999999999999999999999877 889999999999999999999999999999999


Q ss_pred             E-EeecCCCCCccccEEEEEEEEecCCCCHHHHHHhHhhhHHHHHHHHHHHHHHHHHhh
Q 014046          284 R-AVESRRGDGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALRAYVKER  341 (432)
Q Consensus       284 r-pl~s~~~~G~~~aCeVt~~~~~DPGIP~~LvN~~v~~g~~~~lkkL~~alrkY~~~r  341 (432)
                      + +..+..++|  ++|+++|+++.+.|||.|++|++++++||++++||++||++|++++
T Consensus       163 ~~~~~~~~~~~--~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~~~  219 (219)
T KOG2761|consen  163 RVESRSGDEQG--CACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQEKR  219 (219)
T ss_pred             EcccccCCCCc--cEEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhhcC
Confidence            9 655544333  3666666665555599999999999999999999999999999764

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms] Back     alignment and domain information
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily Back     alignment and domain information
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins Back     alignment and domain information
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>PF11274 DUF3074: Protein of unknown function (DUF3074) Back     alignment and domain information
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp Back     alignment and domain information
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins Back     alignment and domain information
>PRK10724 hypothetical protein; Provisional Back     alignment and domain information
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains Back     alignment and domain information
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains Back     alignment and domain information
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily Back     alignment and domain information
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis Back     alignment and domain information
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu Back     alignment and domain information
>COG5637 Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins Back     alignment and domain information
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism] Back     alignment and domain information
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
1ln1_A214 Crystal Structure Of Human Phosphatidylcholine Tran 3e-07
1ln2_A214 Crystal Structure Of Human Phosphatidylcholine Tran 1e-06
>pdb|1LN1|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer Protein In Complex With Dilinoleoylphosphatidylcholine Length = 214 Back     alignment and structure 
Iteration: 1

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 23/222 (10%)
Query: 127 SFVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDV 186
           SF  E   E    L +    G  W Q++  ++    Y+    D + G  +Y+   V ED 
Sbjct: 7   SFSEEQFWEACAELQQPALAGADW-QLLVETSGISIYRL--LDKKTGLYEYKVFGVLEDC 63
Query: 187 TPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRR- 245
           +P ++ D + D D R +WD    Y   L E    G  VV W  K+PF  S+R+Y+  R+ 
Sbjct: 64  SPTLLADIYMDSDYRKQWDQ---YVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQR 120
Query: 246 --IWESGRSYYCVTKGVPYTSVPR---RNKPKRVDLFYSSWYIRAVESRRGDGQLTACEV 300
             +   GR  + +      TS+P+   R+   RV  +  S    A+ES   DG+    +V
Sbjct: 121 RDLDMEGRKIHVIL--ARSTSMPQLGERSGVIRVKQYKQS---LAIES---DGK-KGSKV 171
Query: 301 ILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALRAYVKE 340
            +++ ++ G  IP  +     + G+   +K    A + Y+K+
Sbjct: 172 FMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLKK 213
>pdb|1LN2|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer Protein In Complex With Dilinoleoylphosphatidylcholine (Seleno-Met Protein) Length = 214 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 5e-41
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 6e-31
3qsz_A189 STAR-related lipid transfer protein; structural ge 1e-25
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 9e-25
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 3e-23
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 3e-17
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Length = 214 Back     alignment and structure
 Score =  144 bits (364), Expect = 5e-41
 Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 23/227 (10%)

Query: 123 MEQS--SFVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRS 179
           ME +  SF  E   E    L +    G  W  +++ S  ++    +R  D + G  +Y+ 
Sbjct: 1   MELAAGSFSEEQFWEACAELQQPALAGADWQLLVETSGISI----YRLLDKKTGLYEYKV 56

Query: 180 RTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDRE 239
             V ED +P ++ D + D D R +WD  +     L E    G  VV W  K+PF  S+R+
Sbjct: 57  FGVLEDCSPTLLADIYMDSDYRKQWDQYVK---ELYEQECNGETVVYWEVKYPFPMSNRD 113

Query: 240 YIIGRRIW----ESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQL 295
           Y+  R+      E  + +  + +      +  R+   RV  +  S  I +   +      
Sbjct: 114 YVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKG----- 168

Query: 296 TACEVILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALRAYVKE 340
              +V +++ ++ G  IP  +     + G+   +K    A + Y+K+
Sbjct: 169 --SKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLKK 213
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Length = 255 Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Length = 189 Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Length = 221 Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Length = 229 Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Length = 224 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Length = 258 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 100.0
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 100.0
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 100.0
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 100.0
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 100.0
3qsz_A189 STAR-related lipid transfer protein; structural ge 100.0
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 100.0
2pso_A237 STAR-related lipid transfer protein 13; alpha and 99.97
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 99.97
2d4r_A147 Hypothetical protein TTHA0849; start domain, struc 98.24
1t17_A148 Conserved hypothetical protein; beta-alpha-beta-BE 98.07
3tfz_A172 Cyclase; helix-GRIP, BET V1-like superfamily, bios 97.62
3tl1_A159 WHIE ORF VI, polyketide cyclase; helix-GRIP fold, 97.41
3tvq_A169 Multifunctional cyclase-dehydratase-3-O-methyl TR 97.39
2pcs_A162 Conserved protein; structural genomics, unknown fu 97.11
3ggn_A155 Uncharacterized protein DR_A0006; structural genom 97.1
2ns9_A157 Hypothetical protein APE2225; uncharacterized cons 96.63
3f08_A146 Uncharacterized protein Q6HG14; NESG Q6HG14_bachk 96.54
3p9v_A161 Uncharacterized protein; structural genomics, PSI- 95.47
2le1_A151 Uncharacterized protein; structural genomics, nort 95.41
2qpv_A156 Uncharacterized protein ATU1531; structural genomi 94.28
3p51_A160 Uncharacterized protein; structural genomics, PSI- 93.62
1e09_A159 PRU AV 1; allergen, major cherry allergen, pathoge 93.32
1icx_A155 Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, 92.95
1tw0_A157 Pathogenesis-related class 10 protein SPE-16; seve 92.2
2qim_A158 PR10.2B; trans-zeatin, cytokinin, plant hormones, 91.11
3kl1_A190 PYL2, putative uncharacterized protein AT2G26040; 89.62
3ijt_A155 SMU.440, putative uncharacterized protein; hypothe 88.9
3rt2_A183 Abscisic acid receptor PYL10; ABA-independent PP2C 87.22
3jrs_A208 PYL1, putative uncharacterized protein AT5G46790; 83.41
4a8u_A159 Major pollen allergen BET V 1-J; PR-10 protein; 1. 81.43
3pu2_A164 Uncharacterized protein; SRPBCC superfamily, PSI-b 80.76
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
Probab=100.00  E-value=1e-38  Score=296.45  Aligned_cols=199  Identities=24%  Similarity=0.432  Sum_probs=176.8

Q ss_pred             CCCHHHHHHHHHHHhcCC-CCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHh
Q 014046          128 FVTEDDLEHLCRLVEEKD-GGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWD  205 (432)
Q Consensus       128 ~vtd~Dl~~~~~~~e~~~-~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD  205 (432)
                      .|+|+||+++++.++++. ++++|+++++    +++++||+| .+++|+..||++++++|++++++++++.|.++|++||
T Consensus         7 ~~~~~~f~~~~~~l~~~~~~~~~W~~~~~----~~~v~v~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd   82 (214)
T 1ln1_A            7 SFSEEQFWEACAELQQPALAGADWQLLVE----TSGISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWD   82 (214)
T ss_dssp             -CCHHHHHHTTHHHHSCCCTTTTCEEEEE----ETTEEEEEEEETTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHC
T ss_pred             ccCHHHHHHHHHHhccCCCCCCCcEEEEE----CCCeEEEEeccCCCCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHH
Confidence            699999999999998764 4558999999    789999999 7788999999999998799999999999999999999


Q ss_pred             HhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe---eCC-EEEEEEeccCCCCCCCCCCcEEEEEeeeEE
Q 014046          206 DMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE---SGR-SYYCVTKGVPYTSVPRRNKPKRVDLFYSSW  281 (432)
Q Consensus       206 ~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~---~d~-~~~ivskSV~hp~~P~~~g~VRV~~~~Sgw  281 (432)
                      +++.++++|+.   +|+.|+|++.++|||+++||||+.|.+..   +++ .++++++|++||.+|+++|+||++.+.++|
T Consensus        83 ~~~~~~~vle~---~~~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~  159 (214)
T 1ln1_A           83 QYVKELYEQEC---NGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSL  159 (214)
T ss_dssp             TTEEEEEEEEE---TTEEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEE
T ss_pred             HHHhhEEEecc---CCCEEEEEEEEcCCCCCCceEEEEEEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEE
Confidence            99999999985   45789999999999999999999886543   232 467889999999999999999999999999


Q ss_pred             EEEEeecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHHHHHHh
Q 014046          282 YIRAVESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALRAYVKE  340 (432)
Q Consensus       282 vIrpl~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alrkY~~~  340 (432)
                      +|+|.+.    |   .|+++|++|.|| | ||.|++|+++++++++++++|++++++|.++
T Consensus       160 ~i~p~~~----~---~t~v~~~~~~Dp~G~iP~~l~n~~~~~~~~~~l~~l~k~~~~y~~~  213 (214)
T 1ln1_A          160 AIESDGK----K---GSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLKK  213 (214)
T ss_dssp             EEEECSS----S---SEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHHTC---
T ss_pred             EEecCCC----C---ceEEEEEEEECCCCcccHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence            9999752    2   489999999999 5 9999999999999999999999999999864
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Back     alignment and structure
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6 Back     alignment and structure
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Back     alignment and structure
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Back     alignment and structure
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Back     alignment and structure
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10 Back     alignment and structure
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A Back     alignment and structure
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10 Back     alignment and structure
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A Back     alignment and structure
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} Back     alignment and structure
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Back     alignment and structure
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8 Back     alignment and structure
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Back     alignment and structure
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Back     alignment and structure
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Back     alignment and structure
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Back     alignment and structure
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Back     alignment and structure
>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Back     alignment and structure
>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A Back     alignment and structure
>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Back     alignment and structure
>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Back     alignment and structure
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Back     alignment and structure
>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 432
d1ln1a_203 d.129.3.2 (A:) Phosphatidylcholine transfer protei 6e-30
d1em2a_214 d.129.3.2 (A:) Lipid transport domain of Mln64 {Hu 5e-21
d1jssa_199 d.129.3.2 (A:) Cholesterol-regulated Start protein 6e-15
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 6e-30
 Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 22/216 (10%)

Query: 130 TEDDLEHLCRLVEEKDG-GPVWIQMMDRSTPTMAYQAWRRD-PENGPPQYRSRTVYEDVT 187
           +E+     C  +++    G  W  +++ S  ++    +R    + G  +Y+   V ED +
Sbjct: 2   SEEQFWEACAELQQPALAGADWQLLVETSGISI----YRLLDKKTGLYEYKVFGVLEDCS 57

Query: 188 PEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIW 247
           P ++ D + D D R +WD    Y   L E    G  VV W  K+PF  S+R+Y+  R+  
Sbjct: 58  PTLLADIYMDSDYRKQWDQ---YVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRR 114

Query: 248 ----ESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILF 303
               E  + +  + +      +  R+   RV  +  S  I +   +         +V ++
Sbjct: 115 DLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKG-------SKVFMY 167

Query: 304 HHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALRAY 337
           + ++ G  IP  +     + G+   +K    A + Y
Sbjct: 168 YFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNY 203
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Length = 199 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 100.0
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 100.0
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 100.0
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 99.96
d2d4ra1146 Hypothetical protein TTHA0849 {Thermus thermophilu 98.3
d1t17a_148 Hypothetical protein CC1736 {Caulobacter crescentu 97.96
d2rera1155 Multifunctional enzyme TcmN, cyclase/aromatase dom 97.94
d2ns9a1147 Hypothetical protein APE2225 {Aeropyrum pernix [Ta 97.47
d3cnwa1138 Uncharacterized protein XoxI {Bacillus cereus [Tax 97.14
d2b79a1137 Hypothetical protein SMU440 {Streptococcus mutans 96.95
d2pcsa1147 Hypothetical protein GKP20 {Geobacillus kaustophil 96.92
d1xuva_163 Hypothetical protein MM0500 {Methanosarcina mazei 88.12
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-36  Score=275.69  Aligned_cols=195  Identities=23%  Similarity=0.421  Sum_probs=173.5

Q ss_pred             CCHHHHHHHHHHHhcCC-CCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhH
Q 014046          129 VTEDDLEHLCRLVEEKD-GGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDD  206 (432)
Q Consensus       129 vtd~Dl~~~~~~~e~~~-~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~  206 (432)
                      ++++++.++++.+++.. .+++|++..+    ++|++||+| .+++++..||++++|++++++++++++.|.++|++||+
T Consensus         1 ~~~~~~~~~~~~l~~~~~~~~~W~~~~~----~~gv~vy~~~~~~~~~~~~k~~~~i~~~~~~~~~~~l~d~~~~~~Wd~   76 (203)
T d1ln1a_           1 FSEEQFWEACAELQQPALAGADWQLLVE----TSGISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQ   76 (203)
T ss_dssp             CCHHHHHHTTHHHHSCCCTTTTCEEEEE----ETTEEEEEEEETTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCT
T ss_pred             CCHHHHHHHHHHhcCcccCCCCCEEEEe----cCCEEEEEEecCCCCcEEEEEEEEEcCCCHHHHHHHHcCHhHhhhhcc
Confidence            58999999999887764 4558999999    799999999 67789999999999988999999999999999999999


Q ss_pred             hcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe--e--CCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEE
Q 014046          207 MLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE--S--GRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWY  282 (432)
Q Consensus       207 tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~--~--d~~~~ivskSV~hp~~P~~~g~VRV~~~~Sgwv  282 (432)
                      ++.+  +++.. .+++.|+|++.++|||+++||||+.|++..  +  ...+++++.++.||.+|+.+|+||++.+.++|+
T Consensus        77 ~~~~--~~~~~-~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~  153 (203)
T d1ln1a_          77 YVKE--LYEQE-CNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLA  153 (203)
T ss_dssp             TEEE--EEEEE-ETTEEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEE
T ss_pred             cceE--EEEEc-cCCcEEEEEEcccccccCCceEEEEEEEEEccCCCCeEEEEEeecccCCcCcccCCccccceeeEEEE
Confidence            9976  34443 357789999999999999999999887664  2  345778899999999999999999999999999


Q ss_pred             EEEeecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHHHH
Q 014046          283 IRAVESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALRAY  337 (432)
Q Consensus       283 Irpl~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alrkY  337 (432)
                      |+|+.+    +   .|+++|+.|.|| | ||+|++|+++++.+++++++|++++++|
T Consensus       154 l~~~~~----~---~t~v~~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~l~k~~~~y  203 (203)
T d1ln1a_         154 IESDGK----K---GSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNY  203 (203)
T ss_dssp             EEECSS----S---SEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             EEecCC----C---cEEEEEEEEcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999863    1   489999999999 5 9999999999999999999999999987
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Back     information, alignment and structure
>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Back     information, alignment and structure
>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure