Citrus Sinensis ID: 014047
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 431 | 2.2.26 [Sep-21-2011] | |||||||
| P37662 | 402 | Inner membrane protein Yh | N/A | no | 0.371 | 0.398 | 0.252 | 3e-05 |
| >sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12) GN=yhjX PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 14/174 (8%)
Query: 191 EGAVKEKRRPRRG---EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVL---NNLAQIGVA 244
+ A K++ + G +D+ L E+ K +W+L ++ +G+ V+ ++AQ
Sbjct: 187 KDAPKQEVKTSNGVVEKDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAH 246
Query: 245 LGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMI--LTFLLYA 302
L V + + S+ N +GRL G+LS+ R + I T ++ + + LL+A
Sbjct: 247 LDVVSAANAVTVISIANLSGRLVLGILSDKIARIRVI------TIGQVISLVGMAALLFA 300
Query: 303 SALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGAL 356
+ T +AA + +G ++ SE FGL + Y I LG IG++
Sbjct: 301 PLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSI 354
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Escherichia coli (strain K12) (taxid: 83333) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 431 | ||||||
| 24461856 | 564 | nodulin-like protein [Citrus trifoliata] | 1.0 | 0.764 | 0.988 | 0.0 | |
| 224134428 | 564 | predicted protein [Populus trichocarpa] | 0.990 | 0.757 | 0.697 | 1e-177 | |
| 225443039 | 564 | PREDICTED: uncharacterized membrane prot | 1.0 | 0.764 | 0.715 | 1e-177 | |
| 147775997 | 504 | hypothetical protein VITISV_014065 [Viti | 0.983 | 0.841 | 0.708 | 1e-172 | |
| 224054332 | 564 | predicted protein [Populus trichocarpa] | 0.997 | 0.762 | 0.699 | 1e-171 | |
| 359484689 | 573 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.752 | 0.647 | 1e-169 | |
| 296084552 | 512 | unnamed protein product [Vitis vinifera] | 0.983 | 0.828 | 0.643 | 1e-166 | |
| 449468956 | 565 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.759 | 0.653 | 1e-164 | |
| 449516077 | 565 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.995 | 0.759 | 0.653 | 1e-164 | |
| 255581273 | 570 | conserved hypothetical protein [Ricinus | 0.986 | 0.745 | 0.634 | 1e-161 |
| >gi|24461856|gb|AAN62343.1|AF506028_10 nodulin-like protein [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/431 (98%), Positives = 428/431 (99%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
MRNFPLSRGTV+GILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI
Sbjct: 134 MRNFPLSRGTVAGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 193
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML
Sbjct: 194 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 253
Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
SPLAIPVKMTLFPATKKRIRSA SSDSLAQEGGDST TDPLLTPSSSAAYLGSFYETEDF
Sbjct: 254 SPLAIPVKMTLFPATKKRIRSADSSDSLAQEGGDSTPTDPLLTPSSSAAYLGSFYETEDF 313
Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ
Sbjct: 314 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 373
Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLL 300
IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLL
Sbjct: 374 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLL 433
Query: 301 YASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG 360
YASALSGTLYAAT+LLGVC GVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG
Sbjct: 434 YASALSGTLYAATILLGVCCGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG 493
Query: 361 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQMLYAG 420
LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQMLYAG
Sbjct: 494 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQMLYAG 553
Query: 421 GSFRVPQASDR 431
GSFRVPQASDR
Sbjct: 554 GSFRVPQASDR 564
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Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134428|ref|XP_002327403.1| predicted protein [Populus trichocarpa] gi|222835957|gb|EEE74378.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 298/427 (69%), Positives = 363/427 (85%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
MRNFPLSRGTVSGILKG AGI+AA+YTV+Y++VL+ SA+ LLLFL L IP++CL YFI
Sbjct: 134 MRNFPLSRGTVSGILKGCAGISAAVYTVVYSLVLKGSASNLLLFLTLVIPILCLAMMYFI 193
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
R CTPASGEDSSEH HF+FTQAA + LAIY++ +I VSLSDA+SYILVAI+V+F++
Sbjct: 194 RPCTPASGEDSSEHVHFLFTQAAVILLAIYLLITAIIGTVVSLSDAVSYILVAIVVIFLI 253
Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
SPLAIPVKMT+FP+ K+ + SSD L G++T TDPLLTPSSSA LGSFYE +D
Sbjct: 254 SPLAIPVKMTIFPSRPKKNPPSDSSDHLMLGEGETTPTDPLLTPSSSATSLGSFYENDDA 313
Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
SDVEILLA+GEGAVK+KRRP+RGEDFK+ EA +KADFWLLW VYFLGVG+GVT+LNNLAQ
Sbjct: 314 SDVEILLAMGEGAVKKKRRPKRGEDFKIHEALIKADFWLLWVVYFLGVGSGVTILNNLAQ 373
Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLL 300
IG A G+ DTT LL LF CNF GR+GSG +SEH+VRS+AIPRT+ +TC HI+M +TF+
Sbjct: 374 IGAAFGLEDTTILLALFGFCNFVGRIGSGAVSEHFVRSRAIPRTLLMTCAHIIMAITFIP 433
Query: 301 YASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG 360
+A AL G LY AT LLG+ YG++Y++MVPTASELFGL+HFGLIYN +LLGNP+GALLFSG
Sbjct: 434 FALALDGILYTATALLGISYGILYAVMVPTASELFGLRHFGLIYNVLLLGNPVGALLFSG 493
Query: 361 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQMLYAG 420
+LAG +YDAE +QGSSTC+G +CF++TFL LAG CGLGT++SIILT+RIRPVYQMLY+G
Sbjct: 494 ILAGYVYDAETARQGSSTCLGPDCFKITFLALAGFCGLGTVVSIILTVRIRPVYQMLYSG 553
Query: 421 GSFRVPQ 427
GS+ +PQ
Sbjct: 554 GSYHLPQ 560
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443039|ref|XP_002270754.1| PREDICTED: uncharacterized membrane protein YMR155W [Vitis vinifera] gi|297743570|emb|CBI36437.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 309/432 (71%), Positives = 369/432 (85%), Gaps = 1/432 (0%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
MRNFPLSRGTV+GILKGY G++AA+YT +YN VLQ SA+ LLLFL LG+P++C YFI
Sbjct: 132 MRNFPLSRGTVAGILKGYIGLSAAVYTEIYNSVLQESASKLLLFLTLGLPVLCFALMYFI 191
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
RACTPASGEDSSEHGHF+FTQAASV L IY++A ++ D + SDALS IMV+F+L
Sbjct: 192 RACTPASGEDSSEHGHFLFTQAASVCLGIYLLATTVVDDLFNPSDALSNTFTGIMVIFLL 251
Query: 121 SPLAIPVKMTLFPA-TKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETED 179
PLAIP+KMTLFP+ +KK + GSSDSL Q G+S QT+PLLTPSSSA LGSF+E E
Sbjct: 252 CPLAIPLKMTLFPSNSKKNLPPVGSSDSLVQGEGNSNQTEPLLTPSSSATCLGSFHEGEY 311
Query: 180 FSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
SD+++LLA+GEGA+K+KR+P+RGEDFK EAF+KADFWLLW VYFLGVG+GVTVLNNLA
Sbjct: 312 ASDIDMLLAVGEGAIKKKRKPKRGEDFKFREAFIKADFWLLWLVYFLGVGSGVTVLNNLA 371
Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFL 299
QIGVA GV DTT LL LFS CNF GRL GV+SE++VR++ +PRT+W+T + ++M++TFL
Sbjct: 372 QIGVAFGVTDTTILLSLFSFCNFLGRLFGGVVSEYFVRTRTLPRTIWMTFSQVVMVVTFL 431
Query: 300 LYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFS 359
LYASALSGTLYA+T LLG+CYGV +S+MVP ASELFGLKHFG+IYNF+LLGNPIGALLFS
Sbjct: 432 LYASALSGTLYASTALLGICYGVQFSIMVPCASELFGLKHFGVIYNFMLLGNPIGALLFS 491
Query: 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQMLYA 419
GLLAG +YD EA KQ SSTC+G CFRLTFLVLAG CGLGTILSIILTIRI+PVYQMLYA
Sbjct: 492 GLLAGYVYDFEAAKQQSSTCLGGTCFRLTFLVLAGACGLGTILSIILTIRIKPVYQMLYA 551
Query: 420 GGSFRVPQASDR 431
GGSFR+P +S++
Sbjct: 552 GGSFRLPSSSNQ 563
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147775997|emb|CAN69082.1| hypothetical protein VITISV_014065 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 306/432 (70%), Positives = 359/432 (83%), Gaps = 8/432 (1%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
MRNFPLSRGTV+GILKGY G++AA+YT +YN VLQ SA+ LLLFL LG+P++C YFI
Sbjct: 79 MRNFPLSRGTVAGILKGYIGLSAAVYTEIYNSVLQESASKLLLFLTLGLPVLCFALMYFI 138
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
RACTPASGEDSSEHGHF+FTQAASV L IY++A ++ D + SDALS IMV+F+L
Sbjct: 139 RACTPASGEDSSEHGHFLFTQAASVCLGIYLLATTVVDDLFNPSDALSNTFTGIMVIFLL 198
Query: 121 SPLAIPVKMTLFPA-TKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETED 179
PLAIP+KMTLFP +KK + GSSDSL Q G+S QT+PLLTPSSSA LGSF+E E
Sbjct: 199 CPLAIPLKMTLFPTNSKKNLPPVGSSDSLVQGEGNSNQTEPLLTPSSSATCLGSFHEGEY 258
Query: 180 FSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
SD+++LLA+GEGA+K+KR+P+RGEDFK EAF+KADFWLLW VYFLGVG+GVTVLNNLA
Sbjct: 259 ASDIDMLLAVGEGAIKKKRKPKRGEDFKFREAFIKADFWLLWLVYFLGVGSGVTVLNNLA 318
Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFL 299
QIGVA GV DTT LL LFS CNF GRL GV K +PRT+W+T + ++M++TFL
Sbjct: 319 QIGVAFGVTDTTILLSLFSFCNFLGRLFGGV-------DKTLPRTIWMTFSQVVMVVTFL 371
Query: 300 LYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFS 359
LYASALSGTLYA+T LLG+CYGV +S+MVP ASELFGLKHFG+IYNF+LLGNPIGALLFS
Sbjct: 372 LYASALSGTLYASTALLGICYGVQFSIMVPCASELFGLKHFGVIYNFMLLGNPIGALLFS 431
Query: 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQMLYA 419
GLLAG +YD EA KQ SSTC+G CFRLTFLVLAG CGLGTILSIILTIRI+PVYQMLYA
Sbjct: 432 GLLAGYVYDFEAAKQQSSTCLGGTCFRLTFLVLAGACGLGTILSIILTIRIKPVYQMLYA 491
Query: 420 GGSFRVPQASDR 431
GGSFR+P +S +
Sbjct: 492 GGSFRLPSSSSQ 503
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054332|ref|XP_002298207.1| predicted protein [Populus trichocarpa] gi|222845465|gb|EEE83012.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 302/432 (69%), Positives = 359/432 (83%), Gaps = 2/432 (0%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
MRNFPLSRGTVSGILKGYAGIAAA+YTV+Y +VL+ S + LLL L LGIP++CL YFI
Sbjct: 134 MRNFPLSRGTVSGILKGYAGIAAAVYTVIYKLVLKESDSELLLILTLGIPILCLAMMYFI 193
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
R C+PASG DSSEH HF+F+Q ASV LA+Y++ +I S VSLSD +SYILV IMV+ ++
Sbjct: 194 RPCSPASGVDSSEHVHFIFSQVASVLLALYLLITTIISGVVSLSDTVSYILVLIMVIILM 253
Query: 121 SPLAIPVKMTLFPATKKR-IRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETED 179
SPLAIPVKMTLFPA KR + + SSD L + G+ST TD LLTPSSS LGSFYE ED
Sbjct: 254 SPLAIPVKMTLFPAEHKRHVPPSDSSDHLVPKEGESTPTDSLLTPSSSGTNLGSFYENED 313
Query: 180 FSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
D +LLA+GEGAVK KRRPRRGEDFK+ EA +KADFWLLW V FLGVGAGVTVLNNLA
Sbjct: 314 ALDAGMLLAVGEGAVK-KRRPRRGEDFKIREALIKADFWLLWVVSFLGVGAGVTVLNNLA 372
Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFL 299
QIGVA G+ DTT LL LFS CNF GR+GSG +SEH+VR K IPRT+W+T ++M++TF+
Sbjct: 373 QIGVAFGLEDTTLLLTLFSFCNFVGRIGSGAISEHFVRLKMIPRTLWMTFALMVMLMTFI 432
Query: 300 LYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFS 359
L+A AL+G LYAA LLG+ YGV+Y++MVPT SELFGLKHFGLIY+F+ LGNPIGALLFS
Sbjct: 433 LFAFALNGILYAAIPLLGISYGVLYAIMVPTVSELFGLKHFGLIYSFMGLGNPIGALLFS 492
Query: 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQMLYA 419
G+LAG +YDAEA KQ SS+C+G +CF++TFLVLAGVCGLGTILSIILT+RIRPVY++LY+
Sbjct: 493 GMLAGYVYDAEAAKQSSSSCVGPDCFKVTFLVLAGVCGLGTILSIILTVRIRPVYELLYS 552
Query: 420 GGSFRVPQASDR 431
GGSFR+PQ S
Sbjct: 553 GGSFRLPQTSGH 564
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484689|ref|XP_002268798.2| PREDICTED: uncharacterized protein LOC100251745 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 286/442 (64%), Positives = 356/442 (80%), Gaps = 11/442 (2%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
MRNFPLSRGTV+GILKGY G++AA+YT +Y L S++ LL+FLALG+PLIC YFI
Sbjct: 132 MRNFPLSRGTVAGILKGYGGLSAAVYTEIYTTTLHKSSSELLMFLALGVPLICFTMMYFI 191
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
R CTPASGEDS++HGHF+FTQAASV L Y++ +I +D SLS +SY +A MV+ ++
Sbjct: 192 RPCTPASGEDSAQHGHFLFTQAASVVLGSYLLTTTILNDIFSLSAPISYTFLAAMVLLLM 251
Query: 121 SPLAIPVKMTLFPATKKRI----RSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYE 176
+PLAIP+KMTL P + + + GSS+S+ Q ++ +T+PLLTPSSS A LGSF++
Sbjct: 252 APLAIPIKMTLNPTNRSKSGMLNQPVGSSESMLQGEENADKTEPLLTPSSSTASLGSFHK 311
Query: 177 TEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLN 236
+ S++++LLA GEGAVK+KRRPRRGEDFK EA VK DFWLL+ VYF GVG+GVTVLN
Sbjct: 312 NDCVSEIDMLLAEGEGAVKKKRRPRRGEDFKFTEALVKVDFWLLFLVYFAGVGSGVTVLN 371
Query: 237 NLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMIL 296
NLAQIG+A GV++TT LLCLFS CNF GRLG G +SEH++RSK IPRT+W+TCT ++M++
Sbjct: 372 NLAQIGIAQGVHNTTMLLCLFSFCNFLGRLGGGAVSEHFLRSKTIPRTIWMTCTQVIMVI 431
Query: 297 TFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGAL 356
T+LL+ASAL GTLYAAT LLG+CYGV +S+MVPT SELFGLKHFG+ YNF+ LGNP+GA
Sbjct: 432 TYLLFASALDGTLYAATALLGICYGVQFSIMVPTVSELFGLKHFGIFYNFMSLGNPLGAF 491
Query: 357 LFSGLLAGKLYDAEATKQ-------GSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409
LFSGLLAG +YD EA KQ S +C+G CFRLTFLVLAGVCG+G+ILSIILT+R
Sbjct: 492 LFSGLLAGFVYDNEAAKQQGMNLLNSSVSCLGPNCFRLTFLVLAGVCGVGSILSIILTMR 551
Query: 410 IRPVYQMLYAGGSFRVPQASDR 431
IRPVYQMLY+GGSFR+PQ SD
Sbjct: 552 IRPVYQMLYSGGSFRLPQNSDH 573
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084552|emb|CBI25573.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 282/438 (64%), Positives = 350/438 (79%), Gaps = 14/438 (3%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
MRNFPLSRGTV+GILKGY G++AA+YT +Y L S++ LL+FLALG+PLIC YFI
Sbjct: 82 MRNFPLSRGTVAGILKGYGGLSAAVYTEIYTTTLHKSSSELLMFLALGVPLICFTMMYFI 141
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
R CTPASGEDS++HGHF+FTQAASV L Y++ +I +D SLS +SY +A MV+ ++
Sbjct: 142 RPCTPASGEDSAQHGHFLFTQAASVVLGSYLLTTTILNDIFSLSAPISYTFLAAMVLLLM 201
Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
+PLAIP+KMTL P + S + + ++ +T+PLLTPSSS A LGSF++ +
Sbjct: 202 APLAIPIKMTLNPTNR-------SKSGMLNQPENADKTEPLLTPSSSTASLGSFHKNDCV 254
Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
S++++LLA GEGAVK+KRRPRRGEDFK EA VK DFWLL+ VYF GVG+GVTVLNNLAQ
Sbjct: 255 SEIDMLLAEGEGAVKKKRRPRRGEDFKFTEALVKVDFWLLFLVYFAGVGSGVTVLNNLAQ 314
Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLL 300
IG+A GV++TT LLCLFS CNF GRLG G +SEH++RSK IPRT+W+TCT ++M++T+LL
Sbjct: 315 IGIAQGVHNTTMLLCLFSFCNFLGRLGGGAVSEHFLRSKTIPRTIWMTCTQVIMVITYLL 374
Query: 301 YASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG 360
+ASAL GTLYAAT LLG+CYGV +S+MVPT SELFGLKHFG+ YNF+ LGNP+GA LFSG
Sbjct: 375 FASALDGTLYAATALLGICYGVQFSIMVPTVSELFGLKHFGIFYNFMSLGNPLGAFLFSG 434
Query: 361 LLAGKLYDAEATKQ-------GSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPV 413
LLAG +YD EA KQ S +C+G CFRLTFLVLAGVCG+G+ILSIILT+RIRPV
Sbjct: 435 LLAGFVYDNEAAKQQGMNLLNSSVSCLGPNCFRLTFLVLAGVCGVGSILSIILTMRIRPV 494
Query: 414 YQMLYAGGSFRVPQASDR 431
YQMLY+GGSFR+PQ SD
Sbjct: 495 YQMLYSGGSFRLPQNSDH 512
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468956|ref|XP_004152187.1| PREDICTED: uncharacterized protein LOC101211550 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/430 (65%), Positives = 350/430 (81%), Gaps = 1/430 (0%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
MRNFPLSRGTV+GILKGY G++AA+YTV+Y++VL+ SA LLLFLA+GIP++CL YF+
Sbjct: 134 MRNFPLSRGTVAGILKGYVGLSAAVYTVIYSLVLRKSALNLLLFLAIGIPILCLAMMYFV 193
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
R CTPAS ED SE HF+FTQAA V L +++V+ +I + SDA+ Y LVAIMV+ ++
Sbjct: 194 RPCTPASSEDPSERAHFLFTQAACVLLGLFLVSTTILDATTTPSDAVGYTLVAIMVILLM 253
Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
SPLA+P+KMT+ TK SS+ LA DS+Q +PLLTPSSSA LGSFYE +D
Sbjct: 254 SPLAVPIKMTICARTKTLGPRVDSSEPLASGESDSSQIEPLLTPSSSATNLGSFYENDDA 313
Query: 181 SDVEILLAIGEGAV-KEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
SDVE LLA+GEGA+ K+KRRP+RGEDFKL EA +KADFWLLWF+YFLGVG G+TVLNNL+
Sbjct: 314 SDVETLLAVGEGAIHKKKRRPKRGEDFKLREAVIKADFWLLWFLYFLGVGPGITVLNNLS 373
Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFL 299
QIG++LG+ND T LL LFS CNF GRLGSGV+SEH+VRS+ IPR++W+ ++M + FL
Sbjct: 374 QIGISLGINDATLLLALFSFCNFVGRLGSGVISEHFVRSRMIPRSLWMMFALVLMSIAFL 433
Query: 300 LYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFS 359
LYASAL+ TLY AT L G+ YGV+YS+MVP ASE+FGLK+FG+I+NF+ LGNPIGA+LFS
Sbjct: 434 LYASALTITLYIATGLTGISYGVLYSMMVPLASEIFGLKNFGVIFNFMQLGNPIGAVLFS 493
Query: 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQMLYA 419
LL LYD EA KQGS TCIG +CFR TF +L+GV GLG+I+S+ILTIR+RPVYQMLYA
Sbjct: 494 VLLTSTLYDIEAAKQGSITCIGQQCFRTTFFILSGVAGLGSIVSLILTIRLRPVYQMLYA 553
Query: 420 GGSFRVPQAS 429
GGSFR+PQ+S
Sbjct: 554 GGSFRLPQSS 563
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449516077|ref|XP_004165074.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223430 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/430 (65%), Positives = 349/430 (81%), Gaps = 1/430 (0%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
MRNFPLSRGTV+GILKGY G++AA+YTV+Y++VL+ SA LLLFLA+GIP++CL YF+
Sbjct: 134 MRNFPLSRGTVAGILKGYVGLSAAVYTVIYSLVLRKSALNLLLFLAIGIPILCLAMMYFV 193
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
R CTPAS ED SE HF+FTQAA V L ++V+ +I + SDA+ Y LVAIMV+ ++
Sbjct: 194 RPCTPASSEDPSERAHFLFTQAACVLLXSFLVSTTILDATTTPSDAVGYTLVAIMVILLM 253
Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
SPLA+P+KMT+ TK SS+ LA DS+Q +PLLTPSSSA LGSFYE +D
Sbjct: 254 SPLAVPIKMTICARTKTLGPRVDSSEPLASGESDSSQIEPLLTPSSSATNLGSFYENDDA 313
Query: 181 SDVEILLAIGEGAV-KEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
SDVE LLA+GEGA+ K+KRRP+RGEDFKL EA +KADFWLLWF+YFLGVG G+TVLNNL+
Sbjct: 314 SDVETLLAVGEGAIHKKKRRPKRGEDFKLREAVIKADFWLLWFLYFLGVGPGITVLNNLS 373
Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFL 299
QIG++LG+ND T LL LFS CNF GRLGSGV+SEH+VRS+ IPR++W+ ++M + FL
Sbjct: 374 QIGISLGINDATLLLALFSFCNFVGRLGSGVISEHFVRSRMIPRSLWMMFALVLMSIAFL 433
Query: 300 LYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFS 359
LYASAL+ TLY AT L G+ YGV+YS+MVP ASE+FGLK+FG+I+NF+ LGNPIGA+LFS
Sbjct: 434 LYASALTITLYIATGLTGISYGVLYSMMVPLASEIFGLKNFGVIFNFMQLGNPIGAVLFS 493
Query: 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQMLYA 419
LL LYD EA KQGS TCIG +CFR TF +L+GV GLG+I+S+ILTIR+RPVYQMLYA
Sbjct: 494 VLLTSTLYDIEAAKQGSITCIGQQCFRTTFFILSGVAGLGSIVSLILTIRLRPVYQMLYA 553
Query: 420 GGSFRVPQAS 429
GGSFR+PQ+S
Sbjct: 554 GGSFRLPQSS 563
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581273|ref|XP_002531448.1| conserved hypothetical protein [Ricinus communis] gi|223528941|gb|EEF30935.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/441 (63%), Positives = 351/441 (79%), Gaps = 16/441 (3%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
MRNFPLSRGTV+GILKGY GI+AA++T +Y+M+L NS++ LL+FLA+GIP++C + YF+
Sbjct: 132 MRNFPLSRGTVAGILKGYGGISAAVFTAIYSMLLDNSSSKLLMFLAIGIPVLCFMMMYFV 191
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
+ACTPASGEDSSEH HF+F QA V L YV+ +I + LS +SY +A+M++ ++
Sbjct: 192 KACTPASGEDSSEHSHFLFIQATLVILGFYVLITTILDHMLHLSSPISYSFLAMMIILVM 251
Query: 121 SPLAIPVKMTLFP--ATKKRI--RSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYE 176
+PLAIP+KMT+ ATK + +S SSD L Q G+ +T+PLL + GSF E
Sbjct: 252 APLAIPIKMTICRTRATKSELLDQSVESSDCLVQAEGNGEKTEPLLKSQT----FGSFRE 307
Query: 177 TEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLN 236
++ S+V +LLA GEGAVK++RRPRRGEDFK EA VKADFWLL+FVYF+GVG+GVTVLN
Sbjct: 308 NDETSEVAMLLAEGEGAVKKRRRPRRGEDFKFTEALVKADFWLLFFVYFVGVGSGVTVLN 367
Query: 237 NLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMIL 296
NLAQIG+ALGV+DTT LL LFS CNF GRLG G +SEH+VRS+ IPRT+W+TCT I+MI+
Sbjct: 368 NLAQIGIALGVHDTTTLLSLFSFCNFVGRLGGGTVSEHFVRSRTIPRTIWMTCTQIVMII 427
Query: 297 TFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGAL 356
T+LL+ASA+ G LYAAT LLG+CYGV +S+M+PT SELFGLKHFG+ YNFI +GNP+GA
Sbjct: 428 TYLLFASAIDGILYAATALLGICYGVQFSIMIPTVSELFGLKHFGIFYNFISIGNPLGAF 487
Query: 357 LFSGLLAGKLYDAEATKQ-------GSS-TCIGAECFRLTFLVLAGVCGLGTILSIILTI 408
LFSGLLAG +YD EA KQ GSS CIG CFRLTFLVLAGVCG+G+ILS+ILT+
Sbjct: 488 LFSGLLAGYIYDTEAAKQQGMNLLLGSSIACIGPNCFRLTFLVLAGVCGVGSILSLILTM 547
Query: 409 RIRPVYQMLYAGGSFRVPQAS 429
RI PVY+MLYAGGSFR+PQ S
Sbjct: 548 RIWPVYEMLYAGGSFRLPQTS 568
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 431 | ||||||
| TAIR|locus:2198938 | 561 | AT1G80530 "AT1G80530" [Arabido | 0.986 | 0.757 | 0.562 | 4.8e-126 | |
| TAIR|locus:2116855 | 567 | AT4G34950 [Arabidopsis thalian | 0.902 | 0.686 | 0.362 | 1.2e-65 | |
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.969 | 0.715 | 0.338 | 2.3e-62 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.948 | 0.706 | 0.326 | 1.3e-59 | |
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.672 | 0.531 | 0.391 | 1.2e-49 | |
| TAIR|locus:2027284 | 533 | AT1G74780 [Arabidopsis thalian | 0.443 | 0.358 | 0.402 | 2.3e-44 | |
| TAIR|locus:2011241 | 526 | AT1G18940 [Arabidopsis thalian | 0.496 | 0.406 | 0.350 | 2.9e-44 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.454 | 0.339 | 0.344 | 1e-41 | |
| TAIR|locus:2040809 | 525 | AT2G34350 [Arabidopsis thalian | 0.440 | 0.361 | 0.373 | 4e-40 | |
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.454 | 0.326 | 0.358 | 2e-38 |
| TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 242/430 (56%), Positives = 305/430 (70%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
MRNFP+SRG V+G+LKGY GI+ A +TVL++MVL +SA YFI
Sbjct: 134 MRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSAMDLLLFLTVGIPVICLTVMYFI 193
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
R C PA+GED SE +F F S+ A Y+V ++ S+ L L Y+LVAIMV+ +L
Sbjct: 194 RPCIPATGEDPSEPMYFAFLLVTSILFAAYLVVTTVLSEVFILPSILKYVLVAIMVLLLL 253
Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
SPLA+P+KMTLF + K GSSD+LA+E G T +PLLTPS+SA+ LG +E +D
Sbjct: 254 SPLAVPIKMTLFRSNAKS-SPLGSSDNLAKEEG--THEEPLLTPSTSASNLGPIFEGDDE 310
Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
SD+EILLA EGAVK+KR+PRRGEDFK G+ FVKADFWLLWFVYFLG+G+GVTV NNLAQ
Sbjct: 311 SDMEILLAEAEGAVKKKRKPRRGEDFKFGQVFVKADFWLLWFVYFLGMGSGVTVSNNLAQ 370
Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLL 300
IG A G+ DTT LLCLFS NF GRL SG +SEH+VRS+ +PRT+W+ ++M+ TFLL
Sbjct: 371 IGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTLPRTLWMGAAQLVMVFTFLL 430
Query: 301 YASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG 360
+A A+ T+Y AT L+G+C G + L + T SELFGL+HFG+ +NFILLGNP+GA +FS
Sbjct: 431 FAMAIDHTIYVATALIGICMGFQF-LSIATISELFGLRHFGINFNFILLGNPLGATIFSA 489
Query: 361 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCXXXXXXXXXXXXXXXPVYQMLYAG 420
+LAG +YD EA KQG TCIG +CFR+TFLVLAGVC PVYQ LYA
Sbjct: 490 ILAGYIYDKEADKQGKMTCIGPDCFRVTFLVLAGVCGLGTLLSIILTVRIRPVYQALYAS 549
Query: 421 GSFRV-PQAS 429
GSFR+ PQ++
Sbjct: 550 GSFRLQPQST 559
|
|
| TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 144/397 (36%), Positives = 222/397 (55%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
+RNF +RG VSGILKGY G++ AI+T L N + + + +F+
Sbjct: 137 IRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFAVCLTAVFFL 196
Query: 61 RACTPAS--GEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVF 118
R P++ ED+ E +F +V +A+Y+ + I + A S +I+++
Sbjct: 197 REIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIG---IKTGAFSIAFASILLIL 253
Query: 119 MLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETE 178
+ SP+A+P + G D G + + + +++AA +
Sbjct: 254 LASPVAVPFHAFIRSKVHDEQDVEGRIDEPLLRSGSEIEVEETIVGAAAAADNELPPSLK 313
Query: 179 DFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNL 238
S+ E G EK+RP GE+ + EA + DFW+L+ + GVG G+ V+NN+
Sbjct: 314 PLSNEEEENH-GTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNM 372
Query: 239 AQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTF 298
QIG+ALG D + + + S+ F GR+ SG +SEH+++ PR +W I+M + +
Sbjct: 373 GQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIKKAGTPRPLWNAAAQIIMAVGY 432
Query: 299 LLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLF 358
LL A AL G+LY ++++GVCYGV ++ VPTASELFGLK++GLIYN ++L P+G+ LF
Sbjct: 433 LLMALALPGSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILILNMPLGSFLF 492
Query: 359 SGLLAGKLYDAEATKQ--GSSTCIGAECFRLTFLVLA 393
SGLLAG LYDAEAT G +TC+GA CFR+ F+V+A
Sbjct: 493 SGLLAGLLYDAEATPTPGGGNTCVGAHCFRIVFIVMA 529
|
|
| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 150/443 (33%), Positives = 229/443 (51%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
++NFP SRG V GILKG+AG+ AI + +Y M+ + + +FI
Sbjct: 137 VQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAPSVVVVPLMFFI 196
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
R SS+ F A + LA Y++A+ + D++ LS ++ ++ +L
Sbjct: 197 RPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIIIAFTVVLFAILL 256
Query: 121 SPLAIPVKMTLFPATKK---RIRSAGSSDSLAQEGGDSTQTD--PLLTPSS-------SA 168
P+ IP+ + F A+ + D Q+ G ST D P L S
Sbjct: 257 VPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQSTTPDHGPELIFSEVEDEKPKEV 316
Query: 169 AYLGSFYETEDFSDVE--ILLAIGEGAVKEKRR--PRRGEDFKLGEAFVKADFWLLWFVY 224
L + + + ++ ++ A EGAV+ KRR P RGEDF L +A VKADFWL++F
Sbjct: 317 DLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPHRGEDFTLTQALVKADFWLIFFSL 376
Query: 225 FLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRT 284
LG G+G+TV++NL Q+ +LG ++T + + S+ NF GR+G G SE VR A PR
Sbjct: 377 LLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSELIVRDYAYPRP 436
Query: 285 VWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIY 344
V I ++M + + +A G ++ T+L+G+ YG ++++ TASELFGLK FG +Y
Sbjct: 437 VAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYGAHWAIVPATASELFGLKKFGALY 496
Query: 345 NFILLGNPIGALLFSGLLAGKLYDAEATKQGSST---------CIGAECFRLTFLVLAGV 395
NF+ L NP G+L+FSGL+A +YD EA +Q + C G+ C+ LT L+++G
Sbjct: 497 NFLTLANPAGSLVFSGLIASSIYDREAERQAQGSLFNPDDVLRCRGSICYFLTSLIMSGF 556
Query: 396 CXXXXXXXXXXXXXXXPVYQMLY 418
C PVY LY
Sbjct: 557 CLIAAALSMILVQRTKPVYTNLY 579
|
|
| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 146/447 (32%), Positives = 229/447 (51%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
++NFP SRG V GILKG+AG+ AI + +Y M+ ++ + +FI
Sbjct: 137 VQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTPAVVVVCLMFFI 196
Query: 61 RACTPASGEDS---SEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVV 117
R P G ++ F F + LA Y++++ + D V +S + + ++ V
Sbjct: 197 R---PVGGHKQIRPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVITVFTIVLFV 253
Query: 118 FMLSPLAIPVKMTLFPAT-------------KKRIRSAG--SSDSLAQEGGDSTQTDPLL 162
++ P+ +P+ + F T K+ + G + D + E D D L
Sbjct: 254 ILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPGLQTPDLILSEVEDEKPKDVDL 313
Query: 163 TPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRR--PRRGEDFKLGEAFVKADFWLL 220
P+S ++ +++ A EGAV+ RR P RGEDF L +A VKADFWL+
Sbjct: 314 LPASER------HKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLTQALVKADFWLI 367
Query: 221 WFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKA 280
+F LG G+G+TV++NL Q+ +LG ++T L+ + S+ NF GR+G G SE VR A
Sbjct: 368 FFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGGYFSELVVRDYA 427
Query: 281 IPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHF 340
PR V + ++M + + +A G +Y T+L+G+ YG ++++ TASELFGLK F
Sbjct: 428 YPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAHWAIVPATASELFGLKKF 487
Query: 341 GLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSST---------CIGAECFRLTFLV 391
G +YNF+ L NP G+L+FSG++A +YD EA +Q + C G+ CF LT L+
Sbjct: 488 GALYNFLTLANPAGSLVFSGMIASSIYDREAERQAHGSVFDPDDALRCNGSICFFLTSLI 547
Query: 392 LAGVCXXXXXXXXXXXXXXXPVYQMLY 418
++G C VY LY
Sbjct: 548 MSGFCIIACMLSMILVRRTKSVYTHLY 574
|
|
| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 123/314 (39%), Positives = 188/314 (59%)
Query: 86 FLAIYVVAISITSDYVSLSDALSYILVAIMVVF---MLSPLAIPVKMTLFPATKKRIRSA 142
F +VA+ + + Y+ D + V F +L LA P+ + F + K + +
Sbjct: 213 FTIFNIVAV-VVAVYLQSYDIIGIKTGVFSVAFASILLFLLASPIAIP-FHSFIKSL-NY 269
Query: 143 GSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIG-EGAVKEKRRPR 201
G D L EG Q +PLL +AA E E V ++ A+ E K++++P
Sbjct: 270 GEQDDL--EG--RIQ-EPLLRSEIAAA------EKE----VIVVAAVAAEEEEKKRKKPV 314
Query: 202 RGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCN 261
GED + EA + DFW+L+ + GVG G+ V+NN+ QIG+ALG + + + + S+
Sbjct: 315 LGEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTNVSIFVSMTSIWG 374
Query: 262 FAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYG 321
F GR+ SG LSE++++ PR +W + I+M + ++L A A+ +LY ++++GVCYG
Sbjct: 375 FFGRILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYILMALAVPNSLYIGSMVVGVCYG 434
Query: 322 VIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQ--GSSTC 379
V ++ VPTASELFGLK++GLIYN ++L P+G+ LFSGLLAG LYDAEAT G +TC
Sbjct: 435 VRLAITVPTASELFGLKYYGLIYNILVLNLPLGSFLFSGLLAGFLYDAEATPTPGGGNTC 494
Query: 380 IGAECFRLTFLVLA 393
+GA C+RL F+V+A
Sbjct: 495 VGAHCYRLIFIVMA 508
|
|
| TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 78/194 (40%), Positives = 120/194 (61%)
Query: 204 EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCN 261
E+ L +A K FWLL+ G+G+G++ +NN+ QIG +L + + L+ L+S+ N
Sbjct: 311 ENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWN 370
Query: 262 FAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYG 321
F GR G+G S+ + K PR + + T M + L+ AS G LY +V++GVCYG
Sbjct: 371 FLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYG 430
Query: 322 VIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIG 381
+SLM SELFG++H G I+N I + +PIG+ +FS L G +YD A+ +G+ TC G
Sbjct: 431 SQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTASGEGN-TCYG 489
Query: 382 AECFRLTFLVLAGV 395
+ CFRL+F+++A V
Sbjct: 490 SHCFRLSFIIMASV 503
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| TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
Identities = 76/217 (35%), Positives = 119/217 (54%)
Query: 204 EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCN 261
+ L +A DFWLL+ G+G+G++ +NN+ QIG +L + LL L+++ N
Sbjct: 304 KSLNLLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTSVEINSLLALWNIWN 363
Query: 262 FAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYG 321
F GR G G +S+ + K PR + + T M + L+ AS G LY ++++G+CYG
Sbjct: 364 FIGRFGGGYVSDWLLHRKGWPRPLLMATTLGTMTIGHLIIASGFQGNLYPGSIIVGICYG 423
Query: 322 VIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIG 381
+SLM SELFG+KH G IYN I + +P+G+ +FS L G +YD +G+ TC G
Sbjct: 424 SQWSLMPTITSELFGVKHMGTIYNTISIASPMGSYIFSVRLIGYIYDRTIIGEGN-TCYG 482
Query: 382 AECFRLTFLVLAGVCXXXXXXXXXXXXXXXPVYQMLY 418
CFRL ++V+A V +Y+ ++
Sbjct: 483 PHCFRLAYVVIASVAFLGFLVSCVLVFRTKTIYRQIF 519
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| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.0e-41, Sum P(2) = 1.0e-41
Identities = 72/209 (34%), Positives = 123/209 (58%)
Query: 200 PRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGV-NDT-TELLCLF 257
P RGED+ + +A + D +L+ F G+G+ +T ++NL QIG +LG N T + + L
Sbjct: 319 PPRGEDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLV 378
Query: 258 SLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLG 317
S+ N+ GR+ SG +SE+ + +PR + +T ++ LL A + G++Y A++L+G
Sbjct: 379 SIWNYFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMG 438
Query: 318 VCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSS 377
+G L+ SELFGLK++ ++N L +P+G+ + + + G LYD EA KQ ++
Sbjct: 439 FSFGAQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKEALKQLTA 498
Query: 378 -----------TCIGAECFRLTFLVLAGV 395
TC+G++C++L FL+LA V
Sbjct: 499 RGLTRKDVKDLTCLGSQCYKLPFLILAAV 527
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| TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 4.0e-40, Sum P(2) = 4.0e-40
Identities = 72/193 (37%), Positives = 115/193 (59%)
Query: 205 DFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNF 262
D + EA +FWLL+ G+G+G+ +NN+ Q+G +L + L+ L+S+ NF
Sbjct: 305 DMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQLNSLVSLWSIWNF 364
Query: 263 AGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGV 322
GR GSG +S+ Y+ S PR V++ T +M + ++ AS L G+LY ++L+G+ YG
Sbjct: 365 LGRFGSGYISDTYLHSHGWPRPVFMAITLGLMAIGHIVMASGLLGSLYIGSLLVGLAYGS 424
Query: 323 IYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGA 382
+SLM SE+FG+ H G I+ I + +P+G+ FS + G LYD A++ S C G
Sbjct: 425 QWSLMPTITSEIFGVLHMGTIFYTISIASPVGSYFFSVKVIGYLYDKVASEDDHS-CYGN 483
Query: 383 ECFRLTFLVLAGV 395
CFR +FL++A +
Sbjct: 484 HCFRTSFLIMAAM 496
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| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 341 (125.1 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 75/209 (35%), Positives = 119/209 (56%)
Query: 200 PRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGV--NDTTELLCLF 257
P RG+D+ + +A D +L+ GVG +T ++NL QIG +LG + + L
Sbjct: 328 PERGDDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLV 387
Query: 258 SLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLG 317
S+ N+ GR+ SGV+SE ++ PR + +T ++ LL A + G LY A+V++G
Sbjct: 388 SIWNYYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIG 447
Query: 318 VCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQ--- 374
C+G + L+ SE+FGLK++ +YNF + +PIG+ L + +AG LYD EA KQ
Sbjct: 448 FCFGAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKA 507
Query: 375 -GSS-------TCIGAECFRLTFLVLAGV 395
G + CIG CF+L+F+++A V
Sbjct: 508 LGKTRVEGQDLNCIGTSCFKLSFIIIAAV 536
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00440011 | hypothetical protein (564 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 431 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 2e-46 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 2e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-05 | |
| TIGR04259 | 405 | TIGR04259, oxa_formateAnti, oxalate/formate antipo | 2e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.002 | |
| PTZ00207 | 591 | PTZ00207, PTZ00207, hypothetical protein; Provisio | 0.002 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.004 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-46
Identities = 66/127 (51%), Positives = 82/127 (64%)
Query: 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
+RNFP SRG V GILKGYAG++AAIYT LY + N A++LLL AL ++ LV YFI
Sbjct: 122 IRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYFI 181
Query: 61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
R C GE SE F+ SV LA+Y+VA+SI S LS A Y L AIMV+ +L
Sbjct: 182 RPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLLL 241
Query: 121 SPLAIPV 127
PLA+P+
Sbjct: 242 VPLAVPI 248
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This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 8/186 (4%)
Query: 185 ILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA 244
L+ G + + +D+ + E FW+L+ +FL +G+ ++ G +
Sbjct: 175 FLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS 234
Query: 245 LGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYA 302
LG++D + + S+ N GR G LS+ R +T+ I + + +L+
Sbjct: 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGR----QKTMSIVFGISAVGMAAMLFI 290
Query: 303 SALSGTLYAATV-LLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGL 361
L+ L+ ATV L+ +G SL S++FG + Y F+ + +F GL
Sbjct: 291 PMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG-IFGGL 349
Query: 362 LAGKLY 367
+A
Sbjct: 350 IASHAL 355
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 18/190 (9%)
Query: 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYV 276
L +F+ G +T L Q + L + LL LF L G L G+LS+
Sbjct: 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG 239
Query: 277 RSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFG 336
R R + + + + LL + L A +LLG G + ++ ASEL
Sbjct: 240 R----RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAP 295
Query: 337 LKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVC 396
+ G +G L LLAG L D + FL+LA +
Sbjct: 296 PEARGTASGLFNTFGSLGGALGP-LLAGLLLDTGG-------------YGGVFLILAALA 341
Query: 397 GLGTILSIIL 406
L +L ++L
Sbjct: 342 LLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 17/186 (9%)
Query: 185 ILLAIGEGAVKEKRR-PRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV 243
+L A G V ++ + + DF GE FW+++ ++ + G+ L I
Sbjct: 176 LLRAPSPGQVPKQAKVVQTRRDFSPGEMLRTPVFWVMYTMFVMVAAGGLMATAQLGPIAK 235
Query: 244 ALGVNDTTELLCLFS------------LCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTH 291
GV D L + + N R G +S+ R + I
Sbjct: 236 DFGVADVPVTLLGLTMAALTFALSIDRILNGFTRPFFGWISDKIGRENTMFVAFGIEGVG 295
Query: 292 IMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGN 351
I ++ TF + ++ + +A V +G IYSL T ++ FG K+ +
Sbjct: 296 IYLLPTF--GHNPVAFVILSALVFF--AWGEIYSLFPATCADTFGSKYAATNAGLLYTAK 351
Query: 352 PIGALL 357
ALL
Sbjct: 352 GTAALL 357
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This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 21/192 (10%)
Query: 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEH 274
LL+ +FL + L + LG++ + ++ FSL G L +G LS+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 275 YVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASEL 334
+ R R V + + + + LL ++ L LLG+ G +Y +E
Sbjct: 61 FGR-----RRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEW 115
Query: 335 FGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAG 394
F K G G +GALL LL G L ++ +R FL+LA
Sbjct: 116 FPPKERGRALGLFSAGFGLGALL-GPLLGGLLAESLG-------------WRWLFLILAI 161
Query: 395 VCGLGTILSIIL 406
+ L +L + L
Sbjct: 162 LGLLLALLLLFL 173
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 54/209 (25%), Positives = 80/209 (38%), Gaps = 17/209 (8%)
Query: 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTELLCLFSLCNFAG----RLGSG 269
A W L + F VGA ++ N I AL G L L ++ N G RL
Sbjct: 353 ARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMS 412
Query: 270 ---VLSEHYVRSKAIPRTVWI----TCTHIMMILTFLLYASALSGTLYAATVLLGVCYGV 322
+ S+ +P T+ + C M+ L L +AL + A G
Sbjct: 413 YFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLPKAALPLPYFIAAFANG-FMAA 471
Query: 323 IYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGA 382
+L+ T KH YNF LG+ + A+ + LL G+ Y +A K G C
Sbjct: 472 TIALVTRTIFAKDPAKH----YNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTER 527
Query: 383 ECFRLTFLVLAGVCGLGTILSIILTIRIR 411
C + L G+ L I S + ++ R
Sbjct: 528 VCVVMPLAFLLGLSFLAFITSTYVHLQYR 556
|
Length = 591 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 19/157 (12%)
Query: 256 LFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVL 315
FSL + +G LS+ + R R V + + + LL ++ L VL
Sbjct: 40 AFSLGYALAQPLAGRLSDRFGR-----RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL 94
Query: 316 LGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQG 375
G+ G ++ ++ F + G + G +GA L LL G L
Sbjct: 95 QGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAAL-GPLLGGLLASLFG---- 149
Query: 376 SSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRP 412
+R FL+LA + L +L+ +L R P
Sbjct: 150 ---------WRAAFLILAILALLAAVLAALLLPRPPP 177
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 431 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.9 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.87 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.86 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.86 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.85 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.85 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.84 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.84 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.84 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.84 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.83 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.81 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.8 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.8 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.8 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.79 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.79 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.79 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.79 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.78 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.78 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.78 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.78 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.77 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.77 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.76 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.76 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.76 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.76 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.76 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.75 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.75 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.75 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.74 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.74 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.74 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.74 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.74 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.74 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.74 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.73 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.73 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.73 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.73 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.72 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.72 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.72 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.71 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.71 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.71 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.71 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.71 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.7 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.69 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.69 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.69 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.69 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.69 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.68 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.68 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.68 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.67 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.66 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.65 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.65 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.64 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.64 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.64 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.64 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.63 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.63 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.62 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.62 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.62 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.61 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.61 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.6 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.59 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.59 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.59 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.59 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.59 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.58 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.58 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.57 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.57 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.56 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.56 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.56 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.56 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.55 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.54 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.54 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.54 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.54 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.54 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.53 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.53 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.53 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.53 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.53 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.52 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.52 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.52 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.52 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.52 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.52 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.52 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.51 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.51 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.5 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.5 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.5 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.49 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.49 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.49 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.49 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.49 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.49 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.48 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.48 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.48 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.48 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.48 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.48 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.48 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.47 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.47 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.47 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.47 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.46 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.46 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.46 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.46 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.46 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.45 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.45 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.45 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.44 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.44 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.43 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.43 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.43 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.43 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.41 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.4 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.4 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.4 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.4 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.39 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.39 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.39 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.39 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.38 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.38 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.37 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.37 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.36 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.36 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.35 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.34 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.33 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.33 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.32 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.32 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.31 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.31 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.31 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.31 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.3 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.3 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.28 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.27 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.27 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.26 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.25 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.24 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.23 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.23 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.22 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.22 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.21 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.21 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.19 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.19 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.19 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.18 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.17 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.16 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.16 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.14 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.14 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.11 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.11 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.11 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.1 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.1 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.08 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.07 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.05 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.05 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.05 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.9 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.87 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.86 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.86 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.81 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.8 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.77 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.76 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.76 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.75 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.72 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.69 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.63 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.62 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.6 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.57 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.56 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.53 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.52 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.47 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.44 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.39 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.38 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.36 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.35 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.35 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.32 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.28 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.26 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.16 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.06 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.05 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.94 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.88 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.86 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.84 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.81 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.71 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.66 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.63 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.54 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.53 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.45 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.24 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.22 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.19 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.14 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.08 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.0 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.97 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.94 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.85 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.83 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.76 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.68 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.58 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.49 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 96.16 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.93 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.38 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 94.72 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 94.57 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 94.32 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 93.99 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.98 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 93.58 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 93.46 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 93.09 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 92.76 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 92.63 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 90.16 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 89.02 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 87.79 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 86.85 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 86.04 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 84.89 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=316.90 Aligned_cols=379 Identities=21% Similarity=0.310 Sum_probs=297.5
Q ss_pred CCCCCCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCC---C---CCCCcc
Q 014047 2 RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASG---E---DSSEHG 75 (431)
Q Consensus 2 ~~fp~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~---~---~~~~~~ 75 (431)
+|||++||+++|+.+++.|+|++++++++..++.++.+.+++++++...+++++...++|.+|++.. + +++++.
T Consensus 147 ~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~ 226 (591)
T PTZ00207 147 SVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKA 226 (591)
T ss_pred HhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHH
Confidence 6899999999999999999999999999998887666677888888888889999998887765431 1 122332
Q ss_pred -----------------chHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH-HHHHhh-hhhccccccccccc
Q 014047 76 -----------------HFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMV-VFMLSP-LAIPVKMTLFPATK 136 (431)
Q Consensus 76 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~~~~~~~~~~~~~~ 136 (431)
++...+.++++++.|++..++..++++.++..+..+.++++ +++..+ +.+|.+...+ .++
T Consensus 227 ~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~-~~~ 305 (591)
T PTZ00207 227 QRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDG-KRP 305 (591)
T ss_pred HHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc-CCc
Confidence 78899999999999999999999888888888888888776 666677 6888865211 100
Q ss_pred cccccCCCCCcccccCCCCCCCCCCCCCCCcccccCCCCCCCCchhhHHHHHhccccc-ccc-CCCCCCCCCCHHHHhhh
Q 014047 137 KRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAV-KEK-RRPRRGEDFKLGEAFVK 214 (431)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~ 214 (431)
++. .++++ .+++ + .+.+. .+ + +++... +.+ +.|+ .+.++++.+++
T Consensus 306 -----~~~-----~~~~~--~~~~--~----~~~~~--~~--~---------~~~~~~~~~~~~~P~--~~~t~~q~l~~ 352 (591)
T PTZ00207 306 -----HDD-----SDGKA--KEHV--E----AGEEV--SA--A---------EDKVVETDVDYIAPQ--FQETFIEGLKT 352 (591)
T ss_pred -----CCC-----ccccc--cccc--c----ccccc--cc--c---------ccccccccccCCCCC--CcchHHHHHhc
Confidence 000 00000 0000 0 00000 00 0 000000 011 1123 22399999999
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CC-Ccc--hh-HHHHHHHHHhhhhhhhhHHhHhhhccc---CcchHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GV-NDT--TE-LLCLFSLCNFAGRLGSGVLSEHYVRSK---AIPRTVW 286 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~-s~~--~~-~~s~~~i~~~ig~~~~G~lsDr~grr~---~~~r~~~ 286 (431)
.+||++++.++|..+.+..+++|+.++.+++ |+ ++. .. ++++.++++++||+..|+++...-+|+ .+||+.+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~ 432 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIA 432 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHH
Confidence 9999999999999999999999999999999 88 333 23 799999999999999999994433333 2899999
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 287 ITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
+.+..+ +.++.++++...+ ..+++..++.|+++|..++..+.+++|+|+ ++.|+.+.+..++..+|+.+++..+.|.
T Consensus 433 l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~ 510 (591)
T PTZ00207 433 LFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGE 510 (591)
T ss_pred HHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence 999888 7777777766666 789999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 014047 366 LYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQM 416 (431)
Q Consensus 366 i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~ 416 (431)
+||+...++++..|.|.+||+.+|+++++++++++++..+++.|+|+.+++
T Consensus 511 ~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~ 561 (591)
T PTZ00207 511 WYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLK 561 (591)
T ss_pred HHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHH
Confidence 999998877778999999999999999999999999999999999888764
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=195.00 Aligned_cols=283 Identities=12% Similarity=0.031 Sum_probs=197.6
Q ss_pred CC-C-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHH
Q 014047 3 NF-P-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFT 80 (431)
Q Consensus 3 ~f-p-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
.| | ++|+++.|+..+..++|.+++|.+++++.+..+|||+|++++|+.++.+++..+..+.++ .++.++.|..+...
T Consensus 122 ~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~-~~~~~~~d~~g~~~ 200 (495)
T PRK14995 122 TFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA-GRRDQPLNLGHALM 200 (495)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC-CCCCCCCChHhHHH
Confidence 45 4 689999999999999999999999999999999999999999999998887765443222 11222233333333
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCC
Q 014047 81 QAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDP 160 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 160 (431)
....+....+.+.. .....++.+..........+++..+...+.+ .++|
T Consensus 201 ~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~----------------------------~~~p 249 (495)
T PRK14995 201 LIVAILLLVYSAKT---ALKGFLSLWVTSLTLLTGALLLGLFIRTQLA----------------------------ASRP 249 (495)
T ss_pred HHHHHHHHHHHHHh---ccccCCchHHHHHHHHHHHHHHHHHHHHHhc----------------------------CCCC
Confidence 33333332222221 1111123333333333333333333322211 3345
Q ss_pred CCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHH
Q 014047 161 LLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240 (431)
Q Consensus 161 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (431)
++| .+++|++.++...+..++.....+....++|.
T Consensus 250 ~~~---------------------------------------------~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (495)
T PRK14995 250 MID---------------------------------------------MRLFTHRIILSGVVMAMTAMITLVGFELLMAQ 284 (495)
T ss_pred CcC---------------------------------------------HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 67899999988888888777777777788999
Q ss_pred HHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh---h-hhHHHHHH
Q 014047 241 IGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA---L-SGTLYAAT 313 (431)
Q Consensus 241 ~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 313 (431)
++|.. |+++..+ ...+..++..++.++.|++.||+|+|+.+ ..+.++..++...+... + ....+...
T Consensus 285 ~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (495)
T PRK14995 285 ELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVA------TGGMALSALSFYGLAMTDFSTQQWQAWGLM 358 (495)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH------HHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 98875 9988766 77778899999999999999999988655 45555555554433321 1 23345567
Q ss_pred HHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhh
Q 014047 314 VLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDA 369 (431)
Q Consensus 314 ~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~ 369 (431)
++.|+|.|...+.....+.+.+|++++|.+.++.++.+.+|+.+ |+.+.|.+++.
T Consensus 359 ~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~-G~ai~g~i~~~ 413 (495)
T PRK14995 359 ALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGL-GIAIFGLLLSR 413 (495)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 88899999988888888889999999999999999999999999 78899988764
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-21 Score=190.34 Aligned_cols=277 Identities=17% Similarity=0.205 Sum_probs=189.9
Q ss_pred CCCCCCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHHH
Q 014047 2 RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQ 81 (431)
Q Consensus 2 ~~fp~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (431)
++||++|+++.|+..+..+++.+++|.+++.+.+..+||+.|++...+.+++.+..++.++.+......++++..
T Consensus 135 ~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 209 (455)
T TIGR00892 135 KYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKE----- 209 (455)
T ss_pred HHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccc-----
Confidence 467889999999999999999999999999999888999999999888877766655544322110000000000
Q ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCCC
Q 014047 82 AASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPL 161 (431)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 161 (431)
..++
T Consensus 210 ---------------------------------------------------------------------------~~~~- 213 (455)
T TIGR00892 210 ---------------------------------------------------------------------------GLPP- 213 (455)
T ss_pred ---------------------------------------------------------------------------cCCC-
Confidence 0000
Q ss_pred CCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHH
Q 014047 162 LTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241 (431)
Q Consensus 162 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (431)
. ...++.+... . .+...+....+.+|++.+|...+..++.....+....++|.|
T Consensus 214 ---~------~~~~~~~~~~--------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 267 (455)
T TIGR00892 214 ---D------GSTKKLSKKS--------------T---AEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPY 267 (455)
T ss_pred ---C------Cccccccccc--------------h---hhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHH
Confidence 0 0000000000 0 000000111467889999988887777666666677788999
Q ss_pred HHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhh--cccCcchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHH
Q 014047 242 GVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYV--RSKAIPRTVWITCTHIMMILTFLLYASA-LSGTLYAATVLL 316 (431)
Q Consensus 242 ~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~g--rr~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 316 (431)
.++.|++.... ..++..++..++++++|+++||.. +|+.. .+..+.++..++.++.... +.+.+++..++.
T Consensus 268 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~----~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~ 343 (455)
T TIGR00892 268 AKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQY----LFSFALLFNGLTHLLCALAGDYTGLVIYCIFF 343 (455)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHH----HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 88888887654 777888999999999999999742 22211 1122223223333333322 334556677888
Q ss_pred HHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHH
Q 014047 317 GVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVC 396 (431)
Q Consensus 317 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 396 (431)
|++.+...+...+++.|.+|++++|++.|+.+....+|+.+ +|.++|.+.|..++ |+..|++.+++.
T Consensus 344 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i-gp~i~G~l~~~~g~------------~~~~f~~~~~~~ 410 (455)
T TIGR00892 344 GLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLI-GPPLAGRLVDATKN------------YKYIFYASGSIV 410 (455)
T ss_pred HHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHc-cccceeeeehhcCC------------cchHHHHhhHHH
Confidence 99999888888999999999999999999999999999999 89999999998754 899999888777
Q ss_pred HHHHHH
Q 014047 397 GLGTIL 402 (431)
Q Consensus 397 ~i~~i~ 402 (431)
+++.+.
T Consensus 411 li~~~~ 416 (455)
T TIGR00892 411 VSAGLF 416 (455)
T ss_pred HHHHHH
Confidence 766553
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=181.10 Aligned_cols=286 Identities=13% Similarity=0.039 Sum_probs=186.7
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFT 80 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
+.+| ++|+++.|+......+|..++|.++|.+.+..+||+.|+++.+..+++.+...... +....+ +.+.+....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~--~~~~~~--~~r~~~~~~ 200 (471)
T PRK10504 125 KIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM--PNYTMQ--TRRFDLSGF 200 (471)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhC--CCcccc--CCCCChHHH
Confidence 3567 68899999999999999999999999999988999999999999888887776433 222211 222333333
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCC
Q 014047 81 QAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDP 160 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 160 (431)
....+......+... ......+.........+... +...+....++ + ..+|
T Consensus 201 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~------------------------~~~~ 251 (471)
T PRK10504 201 LLLAVGMATLTLALD-GSKGLGLSPLAIAGLVAVGV-VALLLYLLHAR---N------------------------NNRA 251 (471)
T ss_pred HHHHHHHHHHHHHHh-cCCcCCcchHHHHHHHHHHH-HHHHHHHHHHh---c------------------------CCCC
Confidence 333333333333211 11111121111111111111 11111111110 0 1111
Q ss_pred CCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHH
Q 014047 161 LLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240 (431)
Q Consensus 161 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (431)
.++ .+++|++.++......++............|+
T Consensus 252 ~~~---------------------------------------------~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 286 (471)
T PRK10504 252 LFS---------------------------------------------LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPV 286 (471)
T ss_pred ccC---------------------------------------------HHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 46889999988888888777666666678888
Q ss_pred HHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh---hh-hHHHHHH
Q 014047 241 IGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA---LS-GTLYAAT 313 (431)
Q Consensus 241 ~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~ 313 (431)
|.+. +|.++... ...+..++..++.++.|+++||+|+|+.+ ..+.++..+...++... .. ..+.+..
T Consensus 287 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (471)
T PRK10504 287 FLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL------VATTLGLALVSLLFMLVALLGWYYLLPFVL 360 (471)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH------HHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 8885 68887655 66667777888889999999999998776 44444444443333322 11 1233445
Q ss_pred HHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhc
Q 014047 314 VLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEAT 372 (431)
Q Consensus 314 ~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~ 372 (431)
++.|++.+..++..+.++.+.+|++.+|.++++.++...+|..+ ++.+.|.+.+..+.
T Consensus 361 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~~i~g~ll~~~g~ 418 (471)
T PRK10504 361 FLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSI-GVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Confidence 67788888888888899999999999999999999999999999 88899999887653
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=177.08 Aligned_cols=186 Identities=19% Similarity=0.140 Sum_probs=144.3
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhh--hcccCcch
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHY--VRSKAIPR 283 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~--grr~~~~r 283 (431)
...++||..|.+.++.++.+..-+++..|.|.|+.+. |+|...+ ..+.+-++...|.+++||+|||+ |||..+
T Consensus 246 ~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~-- 323 (448)
T COG2271 246 KYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM-- 323 (448)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH--
Confidence 4567999999999999999999999999999999876 8887765 89999999999999999999997 555554
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHh-HHHHHh
Q 014047 284 TVWITCTHIMMILTFLLYASAL---SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPI-GALLFS 359 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~~ 359 (431)
.++.++...++...+-... .....+..+++|+...+..-+......|..|++..|++.|+......+ |... +
T Consensus 324 ---~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~-a 399 (448)
T COG2271 324 ---ALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAAL-A 399 (448)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHh-c
Confidence 2233333333333332222 234455567778877777667777888999999999999999999988 6666 7
Q ss_pred hhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 014047 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPV 413 (431)
Q Consensus 360 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~ 413 (431)
....|++.|.+| |...|++..+.++++.++.+.+.+.+++.
T Consensus 400 ~~~~g~i~d~~g-------------W~g~Fi~~~~~a~l~~lll~~~~~~~~~~ 440 (448)
T COG2271 400 GLPLGYIADTWG-------------WDGGFIVLSIAALLAILLLLPVWNAEERK 440 (448)
T ss_pred CCcceeeEecCC-------------CcchHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 788999988876 99999999888888877766655544443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=175.82 Aligned_cols=172 Identities=22% Similarity=0.346 Sum_probs=133.5
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
++.+|++.+|...+..++..........+.+.+.+++|.+.... ..++..++..+++++.|+++||+|||+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~----- 273 (377)
T TIGR00890 199 WEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTM----- 273 (377)
T ss_pred HHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----
Confidence 56778888888877777666555556666777878888776544 77888899999999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHhhh--hh-HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH
Q 014047 287 ITCTHIMMILTFLLYASAL--SG-TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
.++.++..++.+.+...+ .. .++...++.|++.|...+..+.+++|.+|++++|++.|+.+....+|..+ +|.+.
T Consensus 274 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~~~~ 351 (377)
T TIGR00890 274 -SIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIF-GGLIA 351 (377)
T ss_pred -hHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHH-HHHHH
Confidence 444444545544443322 11 23344567788888888888899999999999999999999999999999 89999
Q ss_pred HHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHH
Q 014047 364 GKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGT 400 (431)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~ 400 (431)
|.+.+..+ |+..|++.+++++++.
T Consensus 352 g~l~~~~g-------------~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 352 SHALTEIG-------------FEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHhhhc-------------hhhHHHHHHHHHHHhc
Confidence 99999877 9999998887777654
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-19 Score=179.66 Aligned_cols=192 Identities=19% Similarity=0.120 Sum_probs=131.4
Q ss_pred HHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
+.+|++.+|...+..++.....+....|+|.|+++ +|++..++ ..+...++..++++++|+++||++||+.+ ..
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~---~~ 329 (467)
T PRK09556 253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRAL---VA 329 (467)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH---HH
Confidence 37899999999999888888877888999999875 59887665 66778889999999999999999998665 11
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHh-HHHHHhhhHHH
Q 014047 287 ITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPI-GALLFSGLLAG 364 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~~p~i~g 364 (431)
...... .....+.+...++ ...++..++.|++..+..........|.+|++.+|++.|+.+....+ |..+ +|.+.|
T Consensus 330 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~-~~~~~G 407 (467)
T PRK09556 330 CIALAL-IIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF-AKVGLG 407 (467)
T ss_pred HHHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH-HhhhHH
Confidence 111111 1111112222222 23445556666544343333446677999999999999999998887 6577 899999
Q ss_pred HHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 365 KLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
++.|...... ...-....+|+..|++..++++++.++.+++.
T Consensus 408 ~i~~~~~~g~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 408 MIADPTKNGT-PIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred HHhccccccc-ccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999211000 00000013499999999888888877766554
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-19 Score=177.07 Aligned_cols=181 Identities=21% Similarity=0.201 Sum_probs=123.8
Q ss_pred HhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHH
Q 014047 211 AFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWI 287 (431)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~ 287 (431)
.+|++.+|.+.+..++.......+..++|.++++ +|++.... ..+.+.++..+|++++|+++||+.+++.-+.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~ 318 (434)
T PRK11663 239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF 318 (434)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence 5678899998888777777767777899999864 58887665 77888899999999999999999433211101111
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHH
Q 014047 288 TCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLY 367 (431)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~ 367 (431)
.++.++..+....+...+.....+..+..|++.............|.+|++++|++.|+.+....+|..+ +|.+.|++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~p~~~g~l~ 397 (434)
T PRK11663 319 AAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAAL-SGYPLAKVL 397 (434)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHH-hcccHHHHH
Confidence 2222222222222221111222222333343333233344566789999999999999999999999999 899999999
Q ss_pred hhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 368 DAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
|..+ |+..|++.+++++++.+..+.
T Consensus 398 ~~~g-------------~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 398 EIWH-------------WTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred Hhcc-------------cHHHHHHHHHHHHHHHHHHHH
Confidence 9877 999999988888777665544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=174.83 Aligned_cols=192 Identities=17% Similarity=0.110 Sum_probs=132.1
Q ss_pred HHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
..+|++.+|...+..++.....+....++|.|+++. |++.... ...++.++..++++++|+++||+++++.. ..
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~---~~ 324 (452)
T PRK11273 248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG---AT 324 (452)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc---hH
Confidence 367889999998888887777778888999999874 8876554 66677888999999999999999543221 01
Q ss_pred HHHHHHHHHHHHHHHHh--h-hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH
Q 014047 287 ITCTHIMMILTFLLYAS--A-LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
......+..++...+.. . +....++..++.|.+...........+.|.+|++.+|++.|+.+....+|+.+++|.+.
T Consensus 325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~ 404 (452)
T PRK11273 325 GVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 404 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhH
Confidence 11112222222222211 1 12223333444454433333334456779999999999999999888888765478999
Q ss_pred HHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 014047 364 GKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQML 417 (431)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~ 417 (431)
|.+.|+.+ |+..|++++++++++++....+.+.++|+.++.
T Consensus 405 g~l~~~~g-------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (452)
T PRK11273 405 GYTVDFFG-------------WDGGFMVMIGGSILAVILLIVVMIGEKRHHEEL 445 (452)
T ss_pred HHHHHHhc-------------chHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 99999987 999999999888888777776655555444443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-19 Score=171.98 Aligned_cols=283 Identities=16% Similarity=0.104 Sum_probs=184.6
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFT 80 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
+++| ++|+++.|+.....++|..+++.+.+.+.+..+||+.|++...+.++..+..++..+.+++++ +..+..
T Consensus 109 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---- 182 (399)
T TIGR00893 109 SWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWLTEE---- 182 (399)
T ss_pred HhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccCCHH----
Confidence 4677 689999999999999999999999999998889999999877776666555543332211110 000000
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCC
Q 014047 81 QAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDP 160 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 160 (431)
+ ++.. .+..
T Consensus 183 ---------------------------------------------------~----~~~~----------------~~~~ 191 (399)
T TIGR00893 183 ---------------------------------------------------E----KYIV----------------VGGL 191 (399)
T ss_pred ---------------------------------------------------H----Hhhc----------------chhh
Confidence 0 0000 0000
Q ss_pred CCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHH
Q 014047 161 LLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240 (431)
Q Consensus 161 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (431)
. . +. ++ .++.+....+.++.+|++++|...+..++.......+..+.|.
T Consensus 192 --~-~--~~-----~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (399)
T TIGR00893 192 --L-A--EQ-----QG---------------------KGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPT 240 (399)
T ss_pred --c-c--cc-----cc---------------------ccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 0 0 00 00 0000111223477889999999998888888888888889999
Q ss_pred HHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcc--hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014047 241 IGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIP--RTVWITCTHIMMILTFLLYASALSGTLYAATVL 315 (431)
Q Consensus 241 ~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 315 (431)
+.++ .|.+.... ..+...++..++++++|+++||++||+... ......+..++..+........+.....+...+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (399)
T TIGR00893 241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVA 320 (399)
T ss_pred HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 8875 48776554 777888999999999999999999996220 000001111111111111111112222333333
Q ss_pred HHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHH
Q 014047 316 LGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGV 395 (431)
Q Consensus 316 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 395 (431)
.+.+..+..+...+++.|.+|+++||++.|+.+....+|..+ +|.+.|.+.|..+. |+..|++.+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-~~~i~g~l~~~~g~------------~~~~~~~~~~~ 387 (399)
T TIGR00893 321 LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIV-GPIVIGAIAATTGS------------FAGALMVVAAL 387 (399)
T ss_pred HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhh-hhHHhhhhccCCCc------------hhHHHHHHHHH
Confidence 333333367888899999999999999999999999999999 89999999998764 88899888888
Q ss_pred HHHHHHHHHH
Q 014047 396 CGLGTILSII 405 (431)
Q Consensus 396 ~~i~~i~~~~ 405 (431)
.+++.+..++
T Consensus 388 ~~~~~~~~~~ 397 (399)
T TIGR00893 388 ALIGALSYLL 397 (399)
T ss_pred HHHHHHHHHH
Confidence 7777665543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-19 Score=178.79 Aligned_cols=285 Identities=15% Similarity=0.110 Sum_probs=192.5
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFT 80 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
+++| ++||++.|+......+|..++|.+++++.+..+||+.|+++.+++++..+...+..+.++ + .++++.|....
T Consensus 117 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~d~~g~ 193 (485)
T TIGR00711 117 NIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDK-P--AASENFDFLGL 193 (485)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcc-c--cccCCCcHHHH
Confidence 4577 789999999999999999999999999999999999999999998888777664433221 1 12223333333
Q ss_pred HHHHHHHHHHHHHHHhhccccccchh-HHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCC
Q 014047 81 QAASVFLAIYVVAISITSDYVSLSDA-LSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTD 159 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (431)
.................. ...|... ..........+.+..+...+.+ .++
T Consensus 194 ~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~ 244 (485)
T TIGR00711 194 LLLSVGLGSLLYGLSEGP-ERGWFDSNEILILSITGLVAIIAFVVWELT----------------------------DDN 244 (485)
T ss_pred HHHHHHHHHHHHHHhhCC-CCCCCCchHHHHHHHHHHHHHHHHHHHHHc----------------------------CCC
Confidence 333333222222222111 1112211 1111222222222222111110 111
Q ss_pred CCCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHH
Q 014047 160 PLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239 (431)
Q Consensus 160 p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (431)
|.++ .+.+|++.++...+..++.....+....++|
T Consensus 245 ~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 279 (485)
T TIGR00711 245 PLVD---------------------------------------------LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLP 279 (485)
T ss_pred CccC---------------------------------------------HHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 5688889998888888877777777888899
Q ss_pred HHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh--hh--h-hHHHH
Q 014047 240 QIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS--AL--S-GTLYA 311 (431)
Q Consensus 240 ~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~--~~--~-~~~~~ 311 (431)
.++++. |+++.+. ...+..++..+++++.|++.||+|||+.+ .++.++.+++..++.. .. + .....
T Consensus 280 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (485)
T TIGR00711 280 LYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLV------TIGLILYAVGFYWRAFTFTPDTPFLAIAL 353 (485)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHH------HHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 999874 8887665 67778899999999999999999998665 5555555555555441 11 1 34455
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 312 ATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 312 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
..++.|++.|..++.......+.+|++++|++.|+.+..+.+|+.+ ++.+.|.+.++.
T Consensus 354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~~i~g~~~~~~ 411 (485)
T TIGR00711 354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSI-GTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5678899999888777777888899999999999999999999999 788999888753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=171.04 Aligned_cols=183 Identities=16% Similarity=0.122 Sum_probs=135.5
Q ss_pred HHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHH
Q 014047 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWI 287 (431)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~ 287 (431)
+.+|++++|.+.+..++.....+....++|.+++++|.+.... ..+++.+++.+|+++.|++.||++||+.+
T Consensus 200 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~------ 273 (393)
T PRK09705 200 RVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLL------ 273 (393)
T ss_pred ccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHH------
Confidence 3456677787777776666666778889999999888887654 88889999999999999999999998665
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhc-CCchhhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 288 TCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFG-LKHFGLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
..+..+..++...+...+.....+..++.|++.+..++.......+.++ ++++|+..|+.+....+++.+ +|.+.|++
T Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~-gp~~~G~l 352 (393)
T PRK09705 274 MLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGL-APWFSGVL 352 (393)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3444444444433322121111222345688888877777767777775 567899999999999999998 89999999
Q ss_pred HhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhch
Q 014047 367 YDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIR 411 (431)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 411 (431)
.|..++ |+..|++.+++++++.++.+.+.++++
T Consensus 353 ~~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 353 RSISGN------------YLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHhCC------------chHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999875 889999988888877766665555443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-18 Score=171.87 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=112.4
Q ss_pred HHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHH---HHHH
Q 014047 225 FLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMM---ILTF 298 (431)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~---~~~~ 298 (431)
++.....+.+..++|.++++ +|++.... ..+...++..++.+++|+++||+|||+.+ ..+.++. ....
T Consensus 260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~------~~~~~~~~~~~~~~ 333 (490)
T PRK10642 260 IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFV------ILGSVALFVLAIPA 333 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHH
Confidence 33445566777899999865 58876544 56667788999999999999999999765 2222211 1111
Q ss_pred HHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCc
Q 014047 299 LLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSS 377 (431)
Q Consensus 299 ~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~ 377 (431)
+.....+ ...+++..++.|++.+...+....+++|.+|++.||++.|+.+....+++.+ +|.+.|++.+..+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~-~p~i~g~l~~~~~~----- 407 (490)
T PRK10642 334 FILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGL-TPTLAAWLVESTQN----- 407 (490)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCC-----
Confidence 1111222 2344556677788777777788888999999999999999865555566666 78899999886643
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 378 TCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 378 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
|+..+++..++++++.+..+++
T Consensus 408 -------~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 408 -------LMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred -------chHHHHHHHHHHHHHHHHHHHh
Confidence 6767666666666666655544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-18 Score=167.76 Aligned_cols=186 Identities=16% Similarity=0.102 Sum_probs=128.2
Q ss_pred HHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
..+|++.+|...+..++.....+....++|.++++. |++.... ..+++.+++.++++++|+++||+++++.. ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~---~~ 322 (438)
T TIGR00712 246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG---AT 322 (438)
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc---HH
Confidence 467889999998887777777777888999999875 8887654 67778889999999999999999765433 11
Q ss_pred HHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH
Q 014047 287 ITCTHIMMILTFLLYASA---LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
.........++...+... +.....+..++.|++..+..........|.+|++.+|++.|+.+....+|+...+|.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~ 402 (438)
T TIGR00712 323 GVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 402 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH
Confidence 111111111222211111 12222333344444332222222345679999999999999999888887543389999
Q ss_pred HHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhch
Q 014047 364 GKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIR 411 (431)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 411 (431)
|.+.|..+ |..+|++..++++++.+..+++.+++|
T Consensus 403 G~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 403 GYTVDFFG-------------WDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHhcc-------------chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999877 999999988888888888777766654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=163.89 Aligned_cols=250 Identities=16% Similarity=0.094 Sum_probs=178.3
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFT 80 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
+++| ++||+++|+..+..++|.+++|.+++.+.+..+||+.|++...+.++..+..+. ..|+++ ++++.
T Consensus 124 ~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~--~~~~~~---~~~~~----- 193 (390)
T PRK03545 124 RVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK--LLPLLP---SEHSG----- 193 (390)
T ss_pred HhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--hCCCCC---CCCcc-----
Confidence 3567 799999999999999999999999999988889999999988877766555442 112110 00000
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCC
Q 014047 81 QAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDP 160 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 160 (431)
+
T Consensus 194 -------------------------------------------------------------------------------~ 194 (390)
T PRK03545 194 -------------------------------------------------------------------------------S 194 (390)
T ss_pred -------------------------------------------------------------------------------h
Confidence 0
Q ss_pred CCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHH
Q 014047 161 LLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240 (431)
Q Consensus 161 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (431)
. .+.++.+|++.+|...+..++.....+....+++.
T Consensus 195 -----------------------------------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (390)
T PRK03545 195 -----------------------------------L---------KSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEP 230 (390)
T ss_pred -----------------------------------H---------HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00245777888877666655555555555566777
Q ss_pred HHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHH-HHhhh-hhHHHHHHHH
Q 014047 241 IGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLL-YASAL-SGTLYAATVL 315 (431)
Q Consensus 241 ~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l 315 (431)
+.++ .|++.... ..+...++..+++++.|+++||+++|... .+..+...+... ....+ ...+++..++
T Consensus 231 ~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 303 (390)
T PRK03545 231 FVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-------IAIALLLVCLLLLLPAANSEWHLSVLSIF 303 (390)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-------HHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 7776 48877654 77778899999999999999999876432 222222222222 22222 3445566677
Q ss_pred HHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHH
Q 014047 316 LGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGV 395 (431)
Q Consensus 316 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 395 (431)
.|++.+.......+.+.+..| +.++++.|+.+....+|..+ ||.++|.++|..+ ++..|++.+++
T Consensus 304 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-G~~~~G~~~~~~g-------------~~~~~~~~~~~ 368 (390)
T PRK03545 304 WGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGA-GALLGNQVSLHLG-------------LSSIGYVGAAL 368 (390)
T ss_pred HHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC-------------hhHHHHHHHHH
Confidence 888877666666777778765 68899999999999999999 8999999999987 99999999988
Q ss_pred HHHHHHHHHHH
Q 014047 396 CGLGTILSIIL 406 (431)
Q Consensus 396 ~~i~~i~~~~~ 406 (431)
.++++++....
T Consensus 369 ~~~~~~~~~~~ 379 (390)
T PRK03545 369 ALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHH
Confidence 88887775543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=173.24 Aligned_cols=308 Identities=21% Similarity=0.250 Sum_probs=218.3
Q ss_pred CCCCCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHHHH
Q 014047 3 NFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQA 82 (431)
Q Consensus 3 ~fp~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (431)
.|+++|+.|.|+..+..|+|..++|.+-..+++..+||+-+++=..+.+-.++.....|+.....++..+.|.+.
T Consensus 163 YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~----- 237 (509)
T KOG2504|consen 163 YFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRN----- 237 (509)
T ss_pred HhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhcc-----
Confidence 688999999999999999999999999999999999999888887777888888887787555443221111110
Q ss_pred HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCCCC
Q 014047 83 ASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLL 162 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l 162 (431)
. . .......+..+.+ .+ +.+.+
T Consensus 238 ----------------~---~------------------------~~~~~~~~~~~~~-----------~~--~~~~~-- 259 (509)
T KOG2504|consen 238 ----------------S---A------------------------ASVESTPKPVELR-----------IS--ERDSG-- 259 (509)
T ss_pred ----------------c---c------------------------ccccccccccccc-----------cc--cCCCC--
Confidence 0 0 0000000000000 00 00000
Q ss_pred CCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCC---HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHH
Q 014047 163 TPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFK---LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239 (431)
Q Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (431)
.. + .. +...+ . . .+.+.+ .. ....+..- ..+++|++.|+.+.+...+...........+|
T Consensus 260 --~~-~--~~-----~~~~~-~-~-~~~~~~--~~--~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~ 322 (509)
T KOG2504|consen 260 --LK-K--LS-----LSNLA-T-L-KRGPDK--WR--NSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLP 322 (509)
T ss_pred --CC-c--cc-----ccchh-h-h-hhCCcc--cc--ccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 00000 0 0 000000 00 00001111 26899999999999999999988888999999
Q ss_pred HHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHH
Q 014047 240 QIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALS-GTLYAATVLL 316 (431)
Q Consensus 240 ~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 316 (431)
.+.++.|++...+ .+++..+.+.+||++.|+++|+...++. +...+++++.+++.+..+..+. ..++...+++
T Consensus 323 ~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~----~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~f 398 (509)
T KOG2504|consen 323 SYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL----VLFLLTLLIAGLARLFLPFATTYVGLIVFSILF 398 (509)
T ss_pred HHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999988776 9999999999999999999999874322 3445666666666655555554 4677778999
Q ss_pred HHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHH
Q 014047 317 GVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVC 396 (431)
Q Consensus 317 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 396 (431)
|++.|...+..+.++.|+++.++...++|+......++..+ +|.+.|.++|.+++ |...|+.++++.
T Consensus 399 G~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~-gpPiag~~~d~tg~------------Y~~~f~~~g~~~ 465 (509)
T KOG2504|consen 399 GFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALV-GPPIAGLLYDITGN------------YDHAFYFCGLCF 465 (509)
T ss_pred HHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHc-CcccceeeeeccCC------------eeeehhhcChHH
Confidence 99999999999999999999999999999999999999999 77799999999986 999999999999
Q ss_pred HHHHHHHHHHH
Q 014047 397 GLGTILSIILT 407 (431)
Q Consensus 397 ~i~~i~~~~~~ 407 (431)
+++.++.++..
T Consensus 466 ~~s~~~~~~~~ 476 (509)
T KOG2504|consen 466 LLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHhH
Confidence 88887766655
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=164.66 Aligned_cols=169 Identities=18% Similarity=0.179 Sum_probs=124.3
Q ss_pred HHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHH
Q 014047 219 LLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMIL 296 (431)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~ 296 (431)
.+++..++.....+.+..++|.+.++.|.+.... ..+...++..+++++.|+++||+|||+.+ .+..+...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~------~~~~~~~~~ 297 (406)
T PRK11551 224 LLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVV------LLIYAGILA 297 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHH
Confidence 3334444444455566778899999888887654 77788899999999999999999998665 333333333
Q ss_pred HHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccC
Q 014047 297 TFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQG 375 (431)
Q Consensus 297 ~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~ 375 (431)
++..+...+ ...+.+..++.|++.++..+...+++.|.+|+++||++.|+.+....+|..+ +|.+.|.+++..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~~~g~l~~~~~~--- 373 (406)
T PRK11551 298 SLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMA-GPLLAGQLLALGRS--- 373 (406)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHH-HhhhHhhhhccCCc---
Confidence 333333222 3344555677788877778888899999999999999999999999999999 89999999987653
Q ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 376 SSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 376 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
|...++....+.+++.++.+.+
T Consensus 374 ---------~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 374 ---------TVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766666655543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-17 Score=163.33 Aligned_cols=329 Identities=15% Similarity=0.083 Sum_probs=229.6
Q ss_pred C-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCC-C-CC---C---Ccc
Q 014047 5 P-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASG-E-DS---S---EHG 75 (431)
Q Consensus 5 p-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~-~-~~---~---~~~ 75 (431)
| |.|+...++....+-....+++.++..+....+|||.|+++.....+++++.++...+|...+ + ++ + .+.
T Consensus 160 p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~l 239 (599)
T PF06609_consen 160 PNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKEL 239 (599)
T ss_pred ccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHh
Confidence 5 678887777776666666677888877777889999999999988888877765554443221 1 11 1 245
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccc-cccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCC
Q 014047 76 HFVFTQAASVFLAIYVVAISITSDY-VSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGD 154 (431)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (431)
|+.+.++....+..+++..+..+.. .+|++......+++..++++.|...+....
T Consensus 240 D~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~------------------------ 295 (599)
T PF06609_consen 240 DWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGA------------------------ 295 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhcc------------------------
Confidence 7888888889999999998888764 689988888888888888888777764310
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhh-HhHHHHHHHHHHhhhhHHH
Q 014047 155 STQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVK-ADFWLLWFVYFLGVGAGVT 233 (431)
Q Consensus 155 ~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 233 (431)
.++|++| .+++|+ +.++...+..++.....+.
T Consensus 296 --~~~Pl~P---------------------------------------------~~Lf~~~r~~~~~lvi~fi~G~~~~s 328 (599)
T PF06609_consen 296 --PKDPLFP---------------------------------------------HRLFKDRRGFAALLVISFISGMNFFS 328 (599)
T ss_pred --CCCCcCC---------------------------------------------HHHhccchHHHHHHHHHHHHHHHHHH
Confidence 2467777 778887 5677767777777666677
Q ss_pred HHhhHHHHHHHh-CCCcc-----hhHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh--
Q 014047 234 VLNNLAQIGVAL-GVNDT-----TELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-- 305 (431)
Q Consensus 234 ~~~~l~~~~~~~-g~s~~-----~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-- 305 (431)
...+.|+..... +-+.. .....+..++..+|.++.|.+.-+++|-|.. ++++.+++.+++-+++..+
T Consensus 329 ~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~-----li~~~~~~ta~~Gama~~~~~ 403 (599)
T PF06609_consen 329 VNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQ-----LIFGSVLMTAFCGAMAAVRPD 403 (599)
T ss_pred HHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHH-----HHHHHHHHHHHHHHHHHccCC
Confidence 777788777654 44432 1266678888999999999999887654332 3444444444433333322
Q ss_pred -hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhc------------
Q 014047 306 -SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEAT------------ 372 (431)
Q Consensus 306 -~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~------------ 372 (431)
....+...++.|++.|....+....++-..|.++.|++.|+....+.+|+.+ +..+...++...-.
T Consensus 404 n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsI-g~aIy~~I~~n~~~~~l~~~v~~a~~ 482 (599)
T PF06609_consen 404 NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSI-GYAIYNAIFTNKLPKELPKYVAPAAL 482 (599)
T ss_pred CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 2344566788899999887777676766778899999999999999999999 56677665532100
Q ss_pred ----c------------c---------CC------------cccccccccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014047 373 ----K------------Q---------GS------------STCIGAECFRLTFLVLAGVCGLGTILSIILTIRI 410 (431)
Q Consensus 373 ----~------------~---------~~------------~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 410 (431)
+ . .+ .+-.-.++||++|+....+.+++++..+++....
T Consensus 483 ~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~ 557 (599)
T PF06609_consen 483 AAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDID 557 (599)
T ss_pred hcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 0 0 00 1112234699999999999999988888865443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-17 Score=160.62 Aligned_cols=155 Identities=19% Similarity=0.154 Sum_probs=119.1
Q ss_pred HHHHhhHHHHHHHhCCCcchhHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHH
Q 014047 232 VTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-SGTLY 310 (431)
Q Consensus 232 ~~~~~~l~~~~~~~g~s~~~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 310 (431)
.....+++.+.++.|.+......+.+.++..+++++.|++.||+++|+.+ ..+..+..++...+...+ ....+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 306 (399)
T PRK05122 233 GTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVA------IVSLLVEILGLLLLWLAPSPWMAL 306 (399)
T ss_pred HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHHhccHHHHH
Confidence 34556677777777765444466778888999999999999999988665 444444444544444333 34455
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHH
Q 014047 311 AATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFL 390 (431)
Q Consensus 311 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~ 390 (431)
+..++.|++.+..++.....+.+.+|++++|+++|+.+....+|..+ +|.+.|.+.+..+ |+..|+
T Consensus 307 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g-------------~~~~~~ 372 (399)
T PRK05122 307 IGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI-TGPLAGLVASWFG-------------YPSIFL 372 (399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-------------HHHHHH
Confidence 66788899998888877788889999999999999999999999988 6779999999876 999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 014047 391 VLAGVCGLGTILSIIL 406 (431)
Q Consensus 391 ~~~~~~~i~~i~~~~~ 406 (431)
+.+++++++.++.+++
T Consensus 373 ~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 373 AAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9888888877666554
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-17 Score=159.43 Aligned_cols=177 Identities=16% Similarity=0.221 Sum_probs=130.2
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTH 291 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~ 291 (431)
+.+|...+..++.....+.+..++|.|+++ +|++..+. ..+.+.++..+|+++.|+++||+++|+.+ ....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l------~~~~ 278 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRIL------TVLA 278 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHH------HHHH
Confidence 456666666666666666778899999965 58887655 77888899999999999999999998765 3333
Q ss_pred HHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 292 IMMILTFLLYASA-LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 292 ~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
.+..+...++... +...+.+..++.|++.+..++...+...+..+ +++++..|.......+|+.+ +|.+.|.+.|..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i-~p~~~G~l~~~~ 356 (394)
T PRK03699 279 GLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTML-TFVVTSPIVAHF 356 (394)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHH-HHHHHHHHHHHh
Confidence 3333333333322 23344555677888888888877777777665 55678888888888999999 899999999987
Q ss_pred hcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 014047 371 ATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRP 412 (431)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 412 (431)
+ ++..|++.+++++++.++...+.+-.||
T Consensus 357 g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (394)
T PRK03699 357 G-------------LQAALLTANGLYAVVFVMCILLGFVSKH 385 (394)
T ss_pred C-------------chhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7 8899998888888877665555444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=167.92 Aligned_cols=188 Identities=18% Similarity=0.163 Sum_probs=131.0
Q ss_pred CHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
++++.++++.+|...+..++.....+.+..++|.|+++ +|++.... ..++..++..++.+++|+++||+++|+...|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~ 332 (465)
T TIGR00894 253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL 332 (465)
T ss_pred CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 46889999999999999998888888888999999876 48887654 6778889999999999999999988766544
Q ss_pred HHH----HHHHHHHHHHHHHHHHh-hhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 284 TVW----ITCTHIMMILTFLLYAS-ALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 284 ~~~----~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
... ..++..+..+..+.... ... ...++...+.+.+.+...+.......|..| +.+|.+.|+.+....+|+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i 411 (465)
T TIGR00894 333 TAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLI 411 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHH
Confidence 322 11111111111111121 111 222333444455555454555555566665 58999999999999999999
Q ss_pred HhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 358 FSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 358 ~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
+|.+.|.+.+.... +.|+..|++.+++.+++.++..+.
T Consensus 412 -~p~l~g~~~~~~~~----------~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 412 -ASTLAGNILSQDSK----------NVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred -HHHhhheeeCCCCc----------hHHHHHHHHHHHHHHHHHHHeeee
Confidence 88899988775421 128999999988888877665543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-17 Score=155.13 Aligned_cols=253 Identities=16% Similarity=0.174 Sum_probs=190.3
Q ss_pred CC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHHHH
Q 014047 4 FP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQA 82 (431)
Q Consensus 4 fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (431)
-| ++|++++|+..+...++.++|.++|.++=+..+||+.|++-...++++++..+... |+ .+..+ +
T Consensus 130 vpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~l--P~-~~~~~--~-------- 196 (394)
T COG2814 130 VPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLL--PP-SEISG--S-------- 196 (394)
T ss_pred cCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhC--CC-ccCCC--C--------
Confidence 45 79999999999999999999999999999999999999999999999999988433 31 10000 0
Q ss_pred HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCCCC
Q 014047 83 ASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLL 162 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l 162 (431)
...+
T Consensus 197 --------------------------------------------------------------------------~~~~-- 200 (394)
T COG2814 197 --------------------------------------------------------------------------LPGP-- 200 (394)
T ss_pred --------------------------------------------------------------------------CCcc--
Confidence 0000
Q ss_pred CCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHH
Q 014047 163 TPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG 242 (431)
Q Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (431)
..+..+.+|+|..|...+..++.....+...+++.+++
T Consensus 201 ------------------------------------------~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L 238 (394)
T COG2814 201 ------------------------------------------LRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFL 238 (394)
T ss_pred ------------------------------------------hhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHH
Confidence 00127889999999999999999888888888888888
Q ss_pred HHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh-h-hhHHHHHHHHHH
Q 014047 243 VAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA-L-SGTLYAATVLLG 317 (431)
Q Consensus 243 ~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~G 317 (431)
++. |++.... ....+.++..+|..++|+++|| +.|+.+ .....++.+..+.+... + .....+..++.|
T Consensus 239 ~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l------~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg 311 (394)
T COG2814 239 ESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRAL------IAALLLLALALLALTFTGASPALALALLFLWG 311 (394)
T ss_pred HHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHH------HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 876 8887654 8889999999999999999999 766555 44444444444443332 2 233344445555
Q ss_pred HHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHH
Q 014047 318 VCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCG 397 (431)
Q Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 397 (431)
+..+........-.++ .-++....+.++.....++|..+ |..++|.++|+.+ |....++.+++.+
T Consensus 312 ~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~-GA~lGG~v~~~~g-------------~~~~~~~~a~l~~ 376 (394)
T COG2814 312 FAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIAL-GAALGGLVLDALG-------------YAATGWVGAALLL 376 (394)
T ss_pred HHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc-------------hHHHHHHHHHHHH
Confidence 5555544444455555 34688999999999999999999 7789999999977 9999999999999
Q ss_pred HHHHHHHHHHhh
Q 014047 398 LGTILSIILTIR 409 (431)
Q Consensus 398 i~~i~~~~~~~~ 409 (431)
++.++.+...+.
T Consensus 377 ~a~~~~~~~~~~ 388 (394)
T COG2814 377 LALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHhc
Confidence 888877664433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=164.42 Aligned_cols=182 Identities=13% Similarity=-0.034 Sum_probs=128.0
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
+..++++.++...+..++... ...+..++|.+.++ +|.+.... ..+...++..++.++.|++.||.++++.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l---- 292 (417)
T PRK10489 218 RFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLM---- 292 (417)
T ss_pred HHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHH----
Confidence 345667776655554443322 23556678889887 68886654 67788899999999999999986655444
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHH
Q 014047 286 WITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAG 364 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g 364 (431)
..+.++.+++.+.+...+. ....+..++.|++.+...+...+++.+.+|++.||++.|+.+....+|..+ +|.+.|
T Consensus 293 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~l~G 369 (417)
T PRK10489 293 --LLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAI-GAALLG 369 (417)
T ss_pred --HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhH-HHHHHH
Confidence 4444444455444443333 344556677788877777777889999999899999999999999999999 899999
Q ss_pred HHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhch
Q 014047 365 KLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIR 411 (431)
Q Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 411 (431)
.+.|..+ ++..++..+++.++..++.....++.|
T Consensus 370 ~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 370 GLGAMMT-------------PVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHhc-------------hhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999887 777777766665555444444334433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.7e-17 Score=157.11 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=123.0
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh-HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE-LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~-~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
+++++|++.+|.+.+..++.....+.+.+|+|+++++.|++.... ..++..+ .|.+..++++||..||+.- ...
T Consensus 185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~---~g~~g~~~~~d~~~r~~~r--~~~ 259 (368)
T TIGR00903 185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAIL---AGLIGVAVIPDRVARAGLR--SIY 259 (368)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHH---HHHHHHHHhhHHhhhhhhH--HHH
Confidence 367889999999999999999999999999999998888775432 3333334 3444568999998765321 111
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 287 ITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
.....++.++....+.... ....++...+.+++....++..+++.+|.+|++.||++.|+.+...++|+.+ +|.+.+.
T Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~-~~~~~~~ 338 (368)
T TIGR00903 260 IRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVA-LALAAML 338 (368)
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHH-HHHHHHH
Confidence 1212222233333333222 2333444455667777777778899999999999999999999999999988 7778877
Q ss_pred HHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHH
Q 014047 366 LYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSI 404 (431)
Q Consensus 366 i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 404 (431)
+.. + .+..|.+.++..+++.+..+
T Consensus 339 ~~~--~-------------~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 339 FIS--S-------------AEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred Hhc--C-------------HHHHHHHHHHHHHHHHHHHH
Confidence 763 3 66778877777777766653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-17 Score=158.77 Aligned_cols=180 Identities=12% Similarity=0.089 Sum_probs=131.8
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
++++|+|.+|...+..++.....+...++.|.+.+++|++..+. ..+...+++.++++..|+++||++||+... ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~--~~ 293 (402)
T TIGR00897 216 TILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR--WF 293 (402)
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH--HH
Confidence 56788999998888877777777778889999998889887664 667788999999999999999999886540 01
Q ss_pred HHHHHHHHHHHHHHHHh--h-hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH
Q 014047 287 ITCTHIMMILTFLLYAS--A-LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
..+...+..+.+..... . +....++..++.|++.+...+ ....+.+. +++++|++.|+.+....+|+.+ +|.+.
T Consensus 294 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~-gp~i~ 370 (402)
T TIGR00897 294 GGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAFL-APAIA 370 (402)
T ss_pred HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHHH-HHHHH
Confidence 11111111112111111 1 123445566777887776544 34556665 4578999999999999999999 89999
Q ss_pred HHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 364 GKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
|.++|..+ |...|++.+++.+++.++..++
T Consensus 371 g~l~~~~g-------------~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 371 VLFIGFFG-------------AIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHhhcc-------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999887 8899999988888877776654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-16 Score=154.67 Aligned_cols=155 Identities=18% Similarity=0.090 Sum_probs=120.6
Q ss_pred HHHHhhHHHHHHHhCCCcchhHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHH
Q 014047 232 VTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-SGTLY 310 (431)
Q Consensus 232 ~~~~~~l~~~~~~~g~s~~~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 310 (431)
.....+.|.++++.|.+......+...++..+++++.|++.||+|+|+.+ ..+..+..++...+...+ ....+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 306 (392)
T PRK12382 233 AVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA------IVSLLVETVGLLLLWLAPTAWVAL 306 (392)
T ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh------HHHHHHHHHHHHHHHHcccHHHHH
Confidence 34556677788877776544466667788899999999999999998877 444444444444443333 33445
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHH
Q 014047 311 AATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFL 390 (431)
Q Consensus 311 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~ 390 (431)
+..++.|++.+...+...+.+.+.+|++++|++.|+.+....+|..+ +|.+.|.+.|+.+ |+..|+
T Consensus 307 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-g~~~~g~l~~~~g-------------~~~~~~ 372 (392)
T PRK12382 307 AGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV-SGPLAGMLATSFG-------------YPSVFL 372 (392)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC-------------chHHHH
Confidence 56678888888888888888899999999999999999999999999 8999999999887 999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 014047 391 VLAGVCGLGTILSIIL 406 (431)
Q Consensus 391 ~~~~~~~i~~i~~~~~ 406 (431)
+.+++.+++.++.+..
T Consensus 373 ~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 373 AGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9998888877766543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-17 Score=160.47 Aligned_cols=183 Identities=15% Similarity=0.116 Sum_probs=130.5
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh----CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcc
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL----GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIP 282 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~ 282 (431)
.+.+|+|.+|.+.+..++.......+..+.|.+..+. +.+.... ..++..++..++.+++|+++||+|+|+.+
T Consensus 217 ~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~- 295 (420)
T PRK09528 217 LALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL- 295 (420)
T ss_pred HHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh-
Confidence 5577888877766554444444444445567666543 3333332 66777788889999999999999999876
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHH-HHHHHHhHHHHHhh
Q 014047 283 RTVWITCTHIMMILTFLLYASA-LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNF-ILLGNPIGALLFSG 360 (431)
Q Consensus 283 r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~i~~p 360 (431)
..+.++..++..++... +.+.+++..++.|++.+........++.+.+|++.+++.++. .++...+|..+ +|
T Consensus 296 -----~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~i-g~ 369 (420)
T PRK09528 296 -----LLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVF-LS 369 (420)
T ss_pred -----HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHH-HH
Confidence 45455555554444433 344556667778888877777777888999999999988766 56778899999 78
Q ss_pred hHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhch
Q 014047 361 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIR 411 (431)
Q Consensus 361 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 411 (431)
.+.|++.|..| |+.+|.+.+++.++..++.+...++.+
T Consensus 370 ~~~G~l~~~~G-------------~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 370 TLAGNLYDSIG-------------FQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHhhC-------------chHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 89999999887 999999988887777666555444433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=166.99 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=105.2
Q ss_pred HHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 014047 254 LCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTAS 332 (431)
Q Consensus 254 ~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~ 332 (431)
..+..++..+|.+++|+++||+|||+.+ .+++++.+++++++.... ...+++..++.|++.++.++...++++
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l------~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~a 674 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRLRML------AGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTV 674 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455688899999999999999999776 556666666555554433 334555566778888888888999999
Q ss_pred HhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhch
Q 014047 333 ELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIR 411 (431)
Q Consensus 333 ~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 411 (431)
|++|++.||+++|+.+....+|+++ +|+++|.+.+.. ...+|++.+++.+++.++.+++ ++++
T Consensus 675 El~Pt~~Rgta~Gi~~~~~rlGaii-gp~i~g~L~~~~--------------~~~pf~i~a~~lll~~ll~~~L-PET~ 737 (742)
T TIGR01299 675 ELYPSDKRATAFGFLNALCKAAAVL-GILIFGSFVGIT--------------KAAPILFASAALACGGLLALKL-PDTR 737 (742)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHhC-CCCc
Confidence 9999999999999999999999999 898999887653 5677888877777776666554 4443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=166.85 Aligned_cols=177 Identities=14% Similarity=0.134 Sum_probs=120.8
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHI 292 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~ 292 (431)
+.++...+..+..........++.|.+.++.|++.... ...+..++..++++++|+++||+|||+.+ ..+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~------~~~~~ 357 (481)
T TIGR00879 284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL------LIGAA 357 (481)
T ss_pred HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------HHHHH
Confidence 33444444444333333445667788888888887544 66777888999999999999999998765 33344
Q ss_pred HHHHHHHHHH---h--hh------hhHHHHHHHHHHHHhhhh-hhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhh
Q 014047 293 MMILTFLLYA---S--AL------SGTLYAATVLLGVCYGVI-YSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG 360 (431)
Q Consensus 293 ~~~~~~~~~~---~--~~------~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p 360 (431)
+..++++.+. . .+ ....+....+.+.+.+.. .+....++.|.+|++.|+++.|+.+....+|+.+ +|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i-~~ 436 (481)
T TIGR00879 358 GMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI-VG 436 (481)
T ss_pred HHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4444433332 1 11 112222333333334333 3556677799999999999999999999999999 78
Q ss_pred hHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhch
Q 014047 361 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIR 411 (431)
Q Consensus 361 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 411 (431)
.+.+.+.++.+ |++.|++.+++++++.++.+++.++++
T Consensus 437 ~~~~~~~~~~~-------------~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 437 FLFPTMLESIG-------------VGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHhcC-------------ccceehhHHHHHHHHHHHHheecccCC
Confidence 89999998876 888999888888888777665544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=158.35 Aligned_cols=157 Identities=17% Similarity=0.133 Sum_probs=107.7
Q ss_pred HHHHhhhHhHHHHHHHHH---HhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcc
Q 014047 208 LGEAFVKADFWLLWFVYF---LGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIP 282 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~ 282 (431)
+++.+|++.++....... +.....+.+..++|.++++.|++.... ..+...++..++++++|+++||++||+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~- 299 (426)
T PRK12307 221 MKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF- 299 (426)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-
Confidence 467788887765543332 223333345678899998888876554 67778899999999999999999998665
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHh--hhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHh
Q 014047 283 RTVWITCTHIMMILTFLLYAS-ALSGTLYAATVLLGVCY--GVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFS 359 (431)
Q Consensus 283 r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~--g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~ 359 (431)
..+.++..+..+.+.. .......+..++.|++. .+..+..+.++.|.+|++++|++.|+.+....+|+.+ +
T Consensus 300 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~-g 373 (426)
T PRK12307 300 -----SIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTF-N 373 (426)
T ss_pred -----HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHH-H
Confidence 3333333333332222 12222223333444332 2334667788899999999999999999999999998 8
Q ss_pred hhHHHHHHhhhh
Q 014047 360 GLLAGKLYDAEA 371 (431)
Q Consensus 360 p~i~g~i~~~~~ 371 (431)
|.+.|++.+..+
T Consensus 374 p~~~g~l~~~~g 385 (426)
T PRK12307 374 SMAATWLGITMG 385 (426)
T ss_pred HHHHHHHHHccc
Confidence 999999998876
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=156.34 Aligned_cols=173 Identities=12% Similarity=0.003 Sum_probs=140.0
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
.++.+|+|++|...+..++.......+..+.|.+.++.|.+.... ..+...++..++.+++|++.||+|+|+.+
T Consensus 198 ~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l---- 273 (382)
T TIGR00902 198 FIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLL---- 273 (382)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHH----
Confidence 467899999999999888888887788889999999999887665 66677888888999999999999988766
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHH-HHHHhHHHHHhhhHH
Q 014047 286 WITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFIL-LGNPIGALLFSGLLA 363 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~i~~p~i~ 363 (431)
.++.++..+....+...++ +.+++..++.|+.+|...+....++.+. |++++++..++.+ +...+|..+ +|.++
T Consensus 274 --~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~-g~~~~ 349 (382)
T TIGR00902 274 --LISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAI-FTAFA 349 (382)
T ss_pred --HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 6666666666666654443 4566677999999999999888999987 8888999999986 567789999 89999
Q ss_pred HHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHH
Q 014047 364 GKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
|+++|+.+ + ..|.+++++.+++.++
T Consensus 350 G~l~~~~g-------------~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 350 GFIYPTLG-------------A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHhcc-------------H-HHHHHHHHHHHHHHHH
Confidence 99999986 5 5677777777666444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.2e-17 Score=159.25 Aligned_cols=175 Identities=18% Similarity=0.148 Sum_probs=123.1
Q ss_pred HhhhHhHHHHHHH-HHHhhhhHHHHHhhHHHHHHHhCCCcch------hHHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 211 AFVKADFWLLWFV-YFLGVGAGVTVLNNLAQIGVALGVNDTT------ELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 211 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
.+++++++...+. .++.......+..+++.+.++.+.+... .+.++..++..++++..|+++||++||+.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~-- 291 (408)
T PRK09874 214 SLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKIL-- 291 (408)
T ss_pred hCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH--
Confidence 3444544433222 2222333334556677777765322221 145566788889999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhH
Q 014047 284 TVWITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLL 362 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i 362 (431)
..+.++..++.+.....+ ...+++..++.|++.+...+...+.+.+..+++++|+.+++.+....+|..+ +|.+
T Consensus 292 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-gp~~ 366 (408)
T PRK09874 292 ----ITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVT-GPLM 366 (408)
T ss_pred ----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHh-hHHH
Confidence 444444444444333323 3445566678899999888888888888889899999999999999999999 8999
Q ss_pred HHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 363 AGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 363 ~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
+|.+.+..+ |+..|++.+++.+++.++.+.
T Consensus 367 ~G~l~~~~g-------------~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 367 GAAISANYG-------------FRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHhhcc-------------hhHHHHHHHHHHHHHHHHHHH
Confidence 999998877 999999999888887776544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=164.47 Aligned_cols=184 Identities=17% Similarity=0.169 Sum_probs=124.9
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcc-h
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIP-R 283 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~-r 283 (431)
+++.++++++|.+.+.+++.....+.+.+++|.++.+ +|++...+ ..+++.+++.++++++|+++||++||+... |
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r 324 (476)
T PLN00028 245 LRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGR 324 (476)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchh
Confidence 3567888999988887776666666677788888765 48887655 777888999999999999999999875432 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhH
Q 014047 284 TVWITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLL 362 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i 362 (431)
.++..+..++..+.++++...+ .....+..++.+++.+...+...+++++.. ++++|+++|+.+.+..+|+.+ +|.+
T Consensus 325 ~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i-~~~l 402 (476)
T PLN00028 325 LWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVL-TQLL 402 (476)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHH-HHHH
Confidence 3333444443333333333222 223344455666666655555566666654 578999999998877777776 5544
Q ss_pred HHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 363 AGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 363 ~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
. +..+. .+|+..|++.+++.+++.++.++.+
T Consensus 403 ~----~~~~~----------~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 403 F----FTGSS----------YSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred H----HhcCC----------ccHhhHHHHHHHHHHHHHHHHHhee
Confidence 3 32211 2299999999988888887776654
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-16 Score=154.87 Aligned_cols=179 Identities=11% Similarity=0.082 Sum_probs=121.7
Q ss_pred HHhhhHhHHHHHHH-HHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 210 EAFVKADFWLLWFV-YFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 210 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
.++|+++.|...+. .++.....+....+.|.+.++ +|++.... ......+...++.+++|+++||+|||+.+
T Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~---- 319 (438)
T PRK09952 244 ALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY---- 319 (438)
T ss_pred HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH----
Confidence 35567777666543 334444556677788888764 58776543 44455677788999999999999999765
Q ss_pred HHHHHHHHHHHHHHHH--Hh-h-hhh-HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHH-HHHhHHHHHh
Q 014047 286 WITCTHIMMILTFLLY--AS-A-LSG-TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILL-GNPIGALLFS 359 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~--~~-~-~~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~lg~~i~~ 359 (431)
..+.++..++.+.+ .. . +.. .+++..++.+++.+...+..+++++|.+|++.|+++.|+.+. +..+|+.+ +
T Consensus 320 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~-~ 396 (438)
T PRK09952 320 --ITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGF-T 396 (438)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHH-H
Confidence 22222222222111 11 1 122 223344566788888888889999999999999999999664 45588888 8
Q ss_pred hhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 360 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
|.+.|++.+..+ ++|+..+.+.+++.+++.+..+..
T Consensus 397 p~i~g~l~~~~~-----------~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 397 PFIAAALVTYFG-----------GSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHhcC-----------CCchHHHHHHHHHHHHHHHHHHHc
Confidence 999999998653 128888888888888877766543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=155.03 Aligned_cols=160 Identities=21% Similarity=0.193 Sum_probs=115.3
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchH
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRT 284 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~ 284 (431)
.++.+|++.+|.+.+..++.......+..+.|.+.++ +|.+.... ..+...++..+++++.|+++||..+|+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~--- 285 (379)
T TIGR00881 209 LQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG--- 285 (379)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch---
Confidence 3667889999999888888777777788889998875 48887654 77788899999999999999997554433
Q ss_pred HHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhh
Q 014047 285 VWITCTHIMMILTFLLYAS---ALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGL 361 (431)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~ 361 (431)
............+...+.. .+.....+..++.|+..++.......+..|.+|++.||++.|+.+....+|+.+ +|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~ 364 (379)
T TIGR00881 286 PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGIL-AGL 364 (379)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhh-hhh
Confidence 1111111222222222211 112233444556666555555666778899999999999999999999999998 899
Q ss_pred HHHHHHhhhh
Q 014047 362 LAGKLYDAEA 371 (431)
Q Consensus 362 i~g~i~~~~~ 371 (431)
+.|.+.|..+
T Consensus 365 ~~g~l~~~~g 374 (379)
T TIGR00881 365 PLGYLADGFG 374 (379)
T ss_pred hHHHHHHhhc
Confidence 9999999877
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-16 Score=156.94 Aligned_cols=262 Identities=14% Similarity=0.153 Sum_probs=174.9
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQ-NSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVF 79 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~-~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (431)
++|| +|||++.|+....+.+|.++++.+++++.+ ..+||..|++.....++.++..+++ +++.+..++++.
T Consensus 134 ~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~---~e~~~~~~~~~~---- 206 (491)
T PRK11010 134 DVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA---PEPTDTIPVPKT---- 206 (491)
T ss_pred HhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc---CCCccccccccc----
Confidence 4577 899999999999999999999999999988 5699999999877777666655532 211100000000
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCC
Q 014047 80 TQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTD 159 (431)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (431)
.++
T Consensus 207 -----------------------------------------------------------------------------~~~ 209 (491)
T PRK11010 207 -----------------------------------------------------------------------------LEQ 209 (491)
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 000
Q ss_pred CCCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHH
Q 014047 160 PLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239 (431)
Q Consensus 160 p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (431)
+ ...++++.++++..|...+..++..........+.+
T Consensus 210 ~-------------------------------------------~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~ 246 (491)
T PRK11010 210 A-------------------------------------------VVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTT 246 (491)
T ss_pred h-------------------------------------------HHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000135566677777666555554444444555666
Q ss_pred HHHH-HhCCCcchh--HH-HHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-h-hHHHHHH
Q 014047 240 QIGV-ALGVNDTTE--LL-CLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-S-GTLYAAT 313 (431)
Q Consensus 240 ~~~~-~~g~s~~~~--~~-s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 313 (431)
+++. +.|++.... .. ....++..+|.+++|+++||+|+|+.+ ....+...+....+..+.... + ..+....
T Consensus 247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l---~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~ 323 (491)
T PRK11010 247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRAL---MIFGILQGVSNAGYWLLSITDKNLYSMGAAV 323 (491)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 6654 569888766 33 344578999999999999999988654 211111122222222222221 2 2233344
Q ss_pred HHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHH
Q 014047 314 VLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLA 393 (431)
Q Consensus 314 ~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~ 393 (431)
++..++.|...+...++.++..+++..++.+|+.+....+|..+ ++.+.|.++|..| |+..|.+.+
T Consensus 324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~-~~~~~G~l~~~~G-------------~~~~f~~~~ 389 (491)
T PRK11010 324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVY-VGPVAGWFVEAHG-------------WPTFYLFSV 389 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC-------------hHHHHHHHH
Confidence 55555556666667788889999999999999999999999988 4558999999887 999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014047 394 GVCGLGTILSIILT 407 (431)
Q Consensus 394 ~~~~i~~i~~~~~~ 407 (431)
++++++.++....+
T Consensus 390 ~~~l~~l~~~~~~~ 403 (491)
T PRK11010 390 AAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877766553
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-16 Score=151.22 Aligned_cols=174 Identities=13% Similarity=0.154 Sum_probs=122.1
Q ss_pred HhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHH
Q 014047 211 AFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWI 287 (431)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~ 287 (431)
.+++++++.+.+..++.......+..++|.+.+ ++|.+.... ..+...+...+++++.|+++||+|||+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------ 268 (375)
T TIGR00899 195 LLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM------ 268 (375)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH------
Confidence 345555665555555544444455567777775 458877654 45555566778889999999999998765
Q ss_pred HHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 288 TCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
..+.++..+.+..+...+ .+..++..++.|++.|...+....++.|.+| ++++++.++.+....+|..+ +|.+.|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-g~~~~g~~ 346 (375)
T TIGR00899 269 LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWII-AGSVGGIL 346 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333333333333322222 3344555677788888887878888889886 46779999999999999999 89999999
Q ss_pred HhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 367 YDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
.+..+ |+..|++.+++++++.++.++
T Consensus 347 ~~~~g-------------~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 347 AERWS-------------YHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHhcc-------------chhHHHHHHHHHHHHHHHHhe
Confidence 99876 999999988888877766543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-17 Score=160.67 Aligned_cols=167 Identities=16% Similarity=0.157 Sum_probs=115.7
Q ss_pred hhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh--CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHH
Q 014047 212 FVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL--GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWI 287 (431)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~ 287 (431)
++++.+|...+.+++.....+.+.+++|.+++++ |.+.... ..++..++..+|++++|+++||+++|+.. .
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~---~-- 313 (412)
T TIGR02332 239 IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH---T-- 313 (412)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH---H--
Confidence 3467889888888888888888889999999885 5554443 77888899999999999999999977542 1
Q ss_pred HHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 288 TCTHIMMILTFLLYASA-LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 288 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
....++..+++.+.... +....+....+.++|.....+.......|.+|++++|++.|+.+....+|+.+ +|.+.|.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~-~p~~~g~i 392 (412)
T TIGR02332 314 ALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSAL-SPFLIGIL 392 (412)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhh-hhhhcccc
Confidence 12222222222222111 12222222223333333333444455567889999999999999999999999 89999999
Q ss_pred HhhhhcccCCcccccccccHHHHHHHHHHH
Q 014047 367 YDAEATKQGSSTCIGAECFRLTFLVLAGVC 396 (431)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 396 (431)
.|..++ |++.|++.+++.
T Consensus 393 ~~~~g~------------~~~~~~~~~~~~ 410 (412)
T TIGR02332 393 KDATGS------------FNSGLWFVAALL 410 (412)
T ss_pred cccCCC------------CchhHHHHHHHH
Confidence 998764 999988776644
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=156.53 Aligned_cols=185 Identities=13% Similarity=0.108 Sum_probs=128.4
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
++.+|+|+.|.+.+.+++.++...++..++|++.++ .++.... ...+..+...+++|++|+|+||+|+|+++ ++
T Consensus 246 ~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl---~~ 321 (462)
T PRK15034 246 LPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVT---LI 321 (462)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHH---HH
Confidence 678999999999999999999988899899999877 3433332 34556788899999999999999999776 32
Q ss_pred HHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC---------------------Cchh
Q 014047 287 ITCTHIMMILTFLLYASAL---S-GTLYAATVLLGVCYGVIYSLMVPTASELFGL---------------------KHFG 341 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~---------------------~~~g 341 (431)
..+.+.+............ + ....+..+...++.|...+...-++++.||. ++.|
T Consensus 322 ~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g 401 (462)
T PRK15034 322 NFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETA 401 (462)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHH
Confidence 2222222221111111111 1 1122222222233344444444555555653 2578
Q ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014047 342 LIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRI 410 (431)
Q Consensus 342 ~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 410 (431)
.+.|+......+|+++ -|.+.|..++.+++ |...|+...++.+++.++.+....|+
T Consensus 402 ~v~G~v~a~G~~Ggf~-~p~~~g~~~~~~g~------------~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 402 AALGFISAIGAVGGFF-IPQAFGMSLNMTGS------------PVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHHHHHHcccch-hhHHHHHHHHHcCC------------cHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8999999999999999 78899999998876 99999999999999988888765443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=155.48 Aligned_cols=239 Identities=13% Similarity=0.052 Sum_probs=172.2
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFT 80 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
+.+| ++|+++.|+......+|..++|.+++.+.+..+||+.|++.....+++.+..+.++.+++ .++ ++++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~----- 191 (365)
T TIGR00900 119 DLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPEL-AAS-EIQAL----- 191 (365)
T ss_pred hcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccC-CCc-ccccc-----
Confidence 3567 689999999999999999999999999998889999999887776666655543332111 000 00000
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCC
Q 014047 81 QAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDP 160 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 160 (431)
T Consensus 192 -------------------------------------------------------------------------------- 191 (365)
T TIGR00900 192 -------------------------------------------------------------------------------- 191 (365)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHH-hhHH
Q 014047 161 LLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVL-NNLA 239 (431)
Q Consensus 161 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 239 (431)
+++..++ ....+++.+|++.++...+..++......... .+.|
T Consensus 192 ------------------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (365)
T TIGR00900 192 ------------------SNAVLRD------------------TREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFP 235 (365)
T ss_pred ------------------chhHHHH------------------HHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 0000000 00013557788888877777766665555555 7788
Q ss_pred HHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHH
Q 014047 240 QIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL--SGTLYAATV 314 (431)
Q Consensus 240 ~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 314 (431)
.+.++ +|.+.... ......++..++.++.|+++||++||+.+ ..+..+..++...+...+ ....++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (365)
T TIGR00900 236 YVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM------TGAIFVIGLAILVVGLTPPNFPLFLVLWF 309 (365)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH------HHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 88886 58877654 77778889999999999999999988655 333444444444433332 334566678
Q ss_pred HHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 315 LLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 315 l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
+.|++.+...+...+++.|.+|+++||++.|+.+....++..+ +|.+.|.+.|..
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~~g~l~~~~ 364 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPL-GLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 8899999988889999999999999999999999999999999 888999998865
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-16 Score=158.09 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=103.6
Q ss_pred HHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh-hh-h
Q 014047 232 VTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS-AL-S 306 (431)
Q Consensus 232 ~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~-~~-~ 306 (431)
+....++|.+++ ++|++.... ..+...++..++++++|+++||+|||+.+ .++..+..+..+.+.. .+ .
T Consensus 292 ~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~ 365 (496)
T PRK03893 292 WPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAY------VCSLLISQLLIIPVFAIGGAN 365 (496)
T ss_pred chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------HHHHHHHHHHHHHHhhccccH
Confidence 345678899996 668887665 88888999999999999999999998765 3333333333222221 11 1
Q ss_pred h-HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccccccccc
Q 014047 307 G-TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECF 385 (431)
Q Consensus 307 ~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~ 385 (431)
. ......++.++...+..+..+.+++|.+|++.+|+++|+.+....+|+.+ +|.+.|.+.|+.+ |
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l-gp~l~g~l~~~~g-------------~ 431 (496)
T PRK03893 366 VWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGAL-APILGALIAQRLD-------------L 431 (496)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHH-HHHHHHHHhccCC-------------h
Confidence 1 22222333333333345677788999999999999999999999999999 8999999999877 8
Q ss_pred HHHHHHHHHHHHH
Q 014047 386 RLTFLVLAGVCGL 398 (431)
Q Consensus 386 ~~~f~~~~~~~~i 398 (431)
+..+...++++.+
T Consensus 432 ~~~~~~~~~~~~~ 444 (496)
T PRK03893 432 GTALASLSFSLTF 444 (496)
T ss_pred HHHHHHHHHHHHH
Confidence 8777655544433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-16 Score=149.29 Aligned_cols=182 Identities=23% Similarity=0.241 Sum_probs=135.5
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
+..+++++.|.+.+.++...+....+..++|.|+++. |.+...+ ......+...+.|+++|+|+||+|.+++. +
T Consensus 212 ~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~---~ 288 (417)
T COG2223 212 KAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVT---L 288 (417)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHH---H
Confidence 5677899999999999999999999999999999865 8887775 88888899999999999999999998877 3
Q ss_pred HHHHHHHHHHHHHHHHHhhh-------h-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 286 WITCTHIMMILTFLLYASAL-------S-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
+... .++++........ + ...+...+..+++.|.-.+.....++.+|+ ++.|.+.|+....+.+|+..
T Consensus 289 ~~f~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~ 364 (417)
T COG2223 289 AVFV---GMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFF 364 (417)
T ss_pred HHHH---HHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccc
Confidence 3333 3333333222211 1 112222233333344433444455566664 57899999999999999988
Q ss_pred HhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014047 358 FSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRI 410 (431)
Q Consensus 358 ~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 410 (431)
-|...|..++.+++ ++.+|++...+.+++.+..+....++
T Consensus 365 -lp~~~g~~~~~tg~------------~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 365 -LPLAFGVSLDLTGS------------YTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred -hhHHHHHHHHhccc------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 79999999999986 99999999999998888777655443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=151.91 Aligned_cols=179 Identities=11% Similarity=0.021 Sum_probs=114.1
Q ss_pred HHHHhhhHhHHHHHHHHHHh-hhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 208 LGEAFVKADFWLLWFVYFLG-VGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
+++++|++++|...+..++. ....+.+..|+|.++++ +|.+..+. ..++..+...++.++.|+++||++||+.+
T Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~-- 312 (432)
T PRK10406 235 LKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSM-- 312 (432)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH--
Confidence 46788888888776665543 55566778899998865 58886554 56666777788899999999999998655
Q ss_pred HHHHHHHHHHHHHH---HHHHHh-hhhhHH-HHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHh-HHHH
Q 014047 284 TVWITCTHIMMILT---FLLYAS-ALSGTL-YAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPI-GALL 357 (431)
Q Consensus 284 ~~~~~~~~~~~~~~---~~~~~~-~~~~~~-~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i 357 (431)
.+..++..+. .+.... .+.... +....+.+++.+...+..+.+.+|.||++.|+++.|+.+....+ .+..
T Consensus 313 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~ 388 (432)
T PRK10406 313 ----LCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGS 388 (432)
T ss_pred ----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhH
Confidence 2222211111 111111 111122 22222223334444456778899999999999999999866554 3444
Q ss_pred HhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 358 FSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 358 ~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
.|.+.+. .+..+. |...++..+++.+++.+..+++
T Consensus 389 -~p~~~~~-l~~~g~------------~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 389 -AEYVALS-LKSIGM------------ETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred -HHHHHHH-HHHhCC------------CcHHHHHHHHHHHHHHHHHHHh
Confidence 6777774 455553 6667777777777766665543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-16 Score=151.18 Aligned_cols=171 Identities=19% Similarity=0.100 Sum_probs=120.1
Q ss_pred HHHhhhHh--HHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 209 GEAFVKAD--FWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 209 ~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
++.+++++ ++...+..++..........++|.+.++ +|.+.... ..+...++..+++++.|+++||+|||+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-- 288 (394)
T TIGR00883 211 RETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL-- 288 (394)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH--
Confidence 55566554 6666666666666666777888988854 58776654 67778889999999999999999998765
Q ss_pred HHHHHHHHHHHHHHH-HHHHh--hh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHH-HHHHHhHHHHH
Q 014047 284 TVWITCTHIMMILTF-LLYAS--AL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFI-LLGNPIGALLF 358 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~-~~~~~--~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~lg~~i~ 358 (431)
. ....+....+. ..... .+ ....++..++.|++.+...+...+.+.|.+|+++|+++.++. +.+..+|+.+
T Consensus 289 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~- 364 (394)
T TIGR00883 289 -I--IFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGF- 364 (394)
T ss_pred -H--HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhH-
Confidence 1 11111111121 11111 12 234445567778888888889999999999999999999985 4566778878
Q ss_pred hhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHH
Q 014047 359 SGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCG 397 (431)
Q Consensus 359 ~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 397 (431)
+|.+.|.+.|+.+. |+..++...++.+
T Consensus 365 ~p~~~g~l~~~~g~------------~~~~~~~~~~~~l 391 (394)
T TIGR00883 365 APYIAAALVAMTGD------------WYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHcCc------------chhHHHHHHHHHH
Confidence 89999999998764 7777666555444
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=148.99 Aligned_cols=127 Identities=44% Similarity=0.791 Sum_probs=117.0
Q ss_pred CCCCCCCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCC--CCCCCCCccchH
Q 014047 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPA--SGEDSSEHGHFV 78 (431)
Q Consensus 1 ~~~fp~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~ 78 (431)
+||||++||+++|++|+++|||++++++++..+++++..+|++|+++.+.+++++..+++|+.|+. .+++++|+..+.
T Consensus 122 ~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~ 201 (250)
T PF06813_consen 122 VRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFL 201 (250)
T ss_pred HHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999988763 344567788899
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhcc
Q 014047 79 FTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPV 127 (431)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 127 (431)
..+.++++++.|++..++.+++.++++..+....+++++++++|+.+|.
T Consensus 202 ~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~llL~~Pl~i~~ 250 (250)
T PF06813_consen 202 FFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLLLLLLPLAIPV 250 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999999999999999998873
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-15 Score=150.15 Aligned_cols=154 Identities=13% Similarity=0.088 Sum_probs=101.6
Q ss_pred HhhhHhHHHHHHH-HHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 211 AFVKADFWLLWFV-YFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 211 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
..+++..+..... .++.....+....+.|.|+++ +|++..+. ...+..+++.++++++|+++||+|||+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~----- 307 (434)
T PRK15075 233 LAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVL----- 307 (434)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-----
Confidence 3455555544332 233344455677889999986 58886654 56677888999999999999999998765
Q ss_pred HHHHHHHHH-HHHHH--HHhhhh-h-HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHH-HHHhHHHHHhh
Q 014047 287 ITCTHIMMI-LTFLL--YASALS-G-TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILL-GNPIGALLFSG 360 (431)
Q Consensus 287 ~~~~~~~~~-~~~~~--~~~~~~-~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~lg~~i~~p 360 (431)
..+.++.. ..... .....+ . ......++.+++.+...+..+.+++|.+|++.||++.|+.+. +..+++.+ +|
T Consensus 308 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~-~p 385 (434)
T PRK15075 308 -IAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGF-TP 385 (434)
T ss_pred -HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhh-HH
Confidence 22221111 11111 111112 1 223334556677777777777889999999999999999654 44455777 79
Q ss_pred hHHHHHHhhhh
Q 014047 361 LLAGKLYDAEA 371 (431)
Q Consensus 361 ~i~g~i~~~~~ 371 (431)
.+.|.+.|..+
T Consensus 386 ~~~g~i~~~~g 396 (434)
T PRK15075 386 AISTWLIHVTG 396 (434)
T ss_pred HHHHHHHHhcC
Confidence 99999999876
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-15 Score=148.05 Aligned_cols=245 Identities=10% Similarity=0.080 Sum_probs=167.7
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFT 80 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
+.|| ++|+++.|+..+..++|..++|.+++.+.+..+||+.|+++....++.++... +..|++.++ +
T Consensus 135 ~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~--~~~p~~~~~----~------ 202 (394)
T PRK10213 135 RLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWII--KSLPSLPGE----P------ 202 (394)
T ss_pred HHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH--HHCCCCCcc----c------
Confidence 3577 78999999999999999999999999999989999999998766555443332 222221000 0
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCC
Q 014047 81 QAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDP 160 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 160 (431)
++
T Consensus 203 ------------------------------------------------------------------------------~~ 204 (394)
T PRK10213 203 ------------------------------------------------------------------------------SH 204 (394)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred CCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhH-H
Q 014047 161 LLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNL-A 239 (431)
Q Consensus 161 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 239 (431)
...+.++.+|+|.+|...+..++.....+....+. |
T Consensus 205 -------------------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p 241 (394)
T PRK10213 205 -------------------------------------------QKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRP 241 (394)
T ss_pred -------------------------------------------chhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00012567788888887766655555544544554 6
Q ss_pred HHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHH
Q 014047 240 QIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA-LSGTLYAATVLL 316 (431)
Q Consensus 240 ~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 316 (431)
.+.+++|++.... ......++..+++++.|++.||.+++... ....+.....+++.... +...+.+..++.
T Consensus 242 ~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 315 (394)
T PRK10213 242 VYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALA------GAPLVLAVSALVLTLWGSDKIVATGVAIIW 315 (394)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6666778887654 67778889999999999999985433211 22222222222222222 234556667888
Q ss_pred HHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHH
Q 014047 317 GVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVC 396 (431)
Q Consensus 317 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 396 (431)
|++++...+..++.+.+..| ++.+...++......+|..+ ||.++|.++|..+ ++..++..+++.
T Consensus 316 G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~-G~~l~G~l~~~~g-------------~~~~~~~~~~~~ 380 (394)
T PRK10213 316 GLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTC-GAAIGGYALDNIG-------------LTSPLMLSGTLM 380 (394)
T ss_pred HHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC-------------hhhHHHHHHHHH
Confidence 99998888888888888876 56777778777888899999 8999999999877 777777766555
Q ss_pred HHHH
Q 014047 397 GLGT 400 (431)
Q Consensus 397 ~i~~ 400 (431)
++..
T Consensus 381 ~~~~ 384 (394)
T PRK10213 381 LLTA 384 (394)
T ss_pred HHHH
Confidence 4443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-15 Score=142.77 Aligned_cols=165 Identities=17% Similarity=0.163 Sum_probs=124.5
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH---hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA---LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
++.+|++.++...+..++..+....+..|.+.|+.+ +|++.... ..+.+..+.++||++.++++||+++|+.+
T Consensus 134 ~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l-- 211 (310)
T TIGR01272 134 TSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL-- 211 (310)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH--
Confidence 346788899988888888888888999999999975 37776655 88889999999999999999999988765
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH
Q 014047 284 TVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
.++.++.+++.++....+........++.|++.+..++...+...+.+|+ +.+++.++. ....+|+.+ .|.+.
T Consensus 212 ----~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i-~P~l~ 284 (310)
T TIGR01272 212 ----AFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAI-VPLLQ 284 (310)
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchH-HHHHH
Confidence 33344444443333333333334456688999999999988888888864 466777775 566788888 89999
Q ss_pred HHHHhhhhcccCCcccccccccHHHHHHHHHH
Q 014047 364 GKLYDAEATKQGSSTCIGAECFRLTFLVLAGV 395 (431)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 395 (431)
|.+.|..+ .+.+|++..++
T Consensus 285 G~lad~~g-------------~~~a~~v~~~~ 303 (310)
T TIGR01272 285 GSLADCLG-------------IQLAFALPVPC 303 (310)
T ss_pred HHHHHhcc-------------chHHHHHHHHH
Confidence 99999877 78888754443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.2e-16 Score=157.10 Aligned_cols=344 Identities=14% Similarity=0.057 Sum_probs=191.3
Q ss_pred CCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCC--------------------
Q 014047 7 SRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPA-------------------- 66 (431)
Q Consensus 7 ~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~-------------------- 66 (431)
++....|+..+.+.++.++++.+.|.+.+..+.|..++++.....++.++..+......-
T Consensus 124 ~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 203 (505)
T TIGR00898 124 EDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVV 203 (505)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHH
Confidence 446668999999999999999999999988888888888877766666554432111000
Q ss_pred --CCCCCCCccchHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHH--HHHhhhhhccccccccccccccccC
Q 014047 67 --SGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVV--FMLSPLAIPVKMTLFPATKKRIRSA 142 (431)
Q Consensus 67 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (431)
.+..+++++.............+..+.+.+..-. ..|+........+. ..+..+.+|++++|...+++.++..
T Consensus 204 ~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~ 280 (505)
T TIGR00898 204 LNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI---PDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEAL 280 (505)
T ss_pred HhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHH
Confidence 0111222222222222222223333333222211 12443333332222 2223345666665543332221111
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHH
Q 014047 143 GSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWF 222 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (431)
+..++....+. .+ .+.+......++ + . .....+.++++++|++.++...+
T Consensus 281 ~~l~~~~~~~~-----~~------------------~~~~~~~~~~~~--~--~---~~~~~~~~~~~l~~~~~~~~~~~ 330 (505)
T TIGR00898 281 KILQRIAKING-----KK------------------LPAEVLSLSLEK--D--L---SSSKKQYSFLDLFRTPNLRKTTL 330 (505)
T ss_pred HHHHHHHHHcC-----CC------------------CCHHHHhhhhhh--h--h---hhccCCCcHHHHhCChHHHHHHH
Confidence 10000000000 00 000000000000 0 0 00011345788999998888776
Q ss_pred HHHHhhhhHHHHHhhHHHHHHHhCCCcchhHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 014047 223 VYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYA 302 (431)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~ 302 (431)
...+.+.......+.++.+..+++.+.. ....+..+...++.++.++++||+|||+.+ .+..++.+++++.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~dr~grr~~~------~~~~~~~~~~~l~~~ 403 (505)
T TIGR00898 331 CLMMLWFTTAFSYYGLVLDLGNLGGNIY-LDLFISGLVELPAKLITLLLIDRLGRRYTM------AASLLLAGVALLLLL 403 (505)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCChH-HHHHHHHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHHHHH
Confidence 6655444433333334444444454422 234455677788999999999999999766 555555555544443
Q ss_pred hhh-h--hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccc
Q 014047 303 SAL-S--GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTC 379 (431)
Q Consensus 303 ~~~-~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~ 379 (431)
... . ....+..++.+++.+..++..+.+.+|.+|++.|+++.|+.++...+|+.+ +|.+.+ + +..+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i-~p~i~~-~-~~~~-------- 472 (505)
T TIGR00898 404 FVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII-SPFLVY-L-GEKW-------- 472 (505)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHH-HhHHHH-H-HHHH--------
Confidence 322 2 233444556667777778888899999999999999999999999999999 898888 3 3333
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 380 IGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 380 ~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
+..++++.+++.+++.++.+++
T Consensus 473 -----~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 473 -----LFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred -----HhhHHHHHHHHHHHHHHHHHcC
Confidence 5667777777777776665543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-15 Score=148.15 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=111.9
Q ss_pred hhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh
Q 014047 227 GVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS 303 (431)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~ 303 (431)
.......+..++|.+.++ +|+++... ..+...++..++.+++|+++||+|||+.+ ..+.....+.+.....
T Consensus 228 ~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~------~~~~~~~~~~~~~~~~ 301 (393)
T PRK15011 228 MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLM------RVAAVAGVCFYAGMLM 301 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHHHHHHHHHH
Confidence 334444566778888865 58887654 55556677788999999999999998654 2222222222222222
Q ss_pred h-hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccc
Q 014047 304 A-LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGA 382 (431)
Q Consensus 304 ~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~ 382 (431)
. +....++..++.+++.|...+..+.+..|.+| +++|++.++.+....+|..+ +|.++|.+.|..+
T Consensus 302 ~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~-g~~l~G~i~~~~g----------- 368 (393)
T PRK15011 302 AHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWII-AGSLAGIVAEIWN----------- 368 (393)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHhh-----------
Confidence 2 23344455566677777777777788889887 56999999999888999999 8999999999876
Q ss_pred cccHHHHHHHHHHHHHHHHHHHH
Q 014047 383 ECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 383 ~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
|+..|++.+++.+++.++.+.
T Consensus 369 --~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 369 --YHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred --hHHHHHHHHHHHHHHHHHHHh
Confidence 999999888887777666554
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=149.36 Aligned_cols=250 Identities=12% Similarity=0.077 Sum_probs=161.7
Q ss_pred CCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHHH
Q 014047 3 NFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQ 81 (431)
Q Consensus 3 ~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (431)
.+| ++|+++.|+..+...+|..++|.+++.+.+..+||+.|++...+.++.++..+ +..|+.++ + .+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~--~~lp~~~~--~-~~~------ 187 (382)
T PRK10091 119 IIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY--FWVPDIRD--E-AKG------ 187 (382)
T ss_pred hCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH--HhCCCCCc--c-ccc------
Confidence 466 57999999999999999999999999998888999999998877666655443 22222110 0 000
Q ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCCC
Q 014047 82 AASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPL 161 (431)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 161 (431)
+.
T Consensus 188 -----------------------------------------------------------------------------~~- 189 (382)
T PRK10091 188 -----------------------------------------------------------------------------GL- 189 (382)
T ss_pred -----------------------------------------------------------------------------CH-
Confidence 00
Q ss_pred CCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHH
Q 014047 162 LTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241 (431)
Q Consensus 162 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (431)
.+ ..+.+|++.+|...+..++.....+.+..+++.+
T Consensus 190 ----------------------------------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (382)
T PRK10091 190 ----------------------------------RE----------QFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPY 225 (382)
T ss_pred ----------------------------------HH----------HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0334566667776665555444444444555656
Q ss_pred HHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh-hh-hhHHHHHHHHH
Q 014047 242 GVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS-AL-SGTLYAATVLL 316 (431)
Q Consensus 242 ~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~ 316 (431)
.++ .|++.... ..++..++..+++++.|+++||+++|+.. ..+..+..++.+.+.. .+ ....++..++.
T Consensus 226 ~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
T PRK10091 226 MMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIA------AVTDFIIVLALLMLFFFGGMKTASLIFAFIC 299 (382)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 654 58887655 77888999999999999999999998766 4444444444433322 22 23333444455
Q ss_pred HHHhhhhhhhHH-HHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHH
Q 014047 317 GVCYGVIYSLMV-PTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGV 395 (431)
Q Consensus 317 G~~~g~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 395 (431)
+++.++..+... ....+..+.+.++.+ ..+....+|..+ ||.+.|.++|..++ |+..+.+.+++
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~-Gp~~~G~l~~~~~~------------~~~~~~~~~~~ 364 (382)
T PRK10091 300 CAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAI-GAYCGGMMLTLGLA------------YNYVALPAALL 364 (382)
T ss_pred HHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHH-HHHHhHHHHHcccC------------cchHHHHHHHH
Confidence 555544443333 334444444555544 345677899999 89999999997543 99999988777
Q ss_pred HHHHHHHHHHH
Q 014047 396 CGLGTILSIIL 406 (431)
Q Consensus 396 ~~i~~i~~~~~ 406 (431)
++++......+
T Consensus 365 ~~~~~~~~~~~ 375 (382)
T PRK10091 365 SFAAMSSLLLY 375 (382)
T ss_pred HHHHHHHHHHH
Confidence 77665554443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-16 Score=157.76 Aligned_cols=173 Identities=13% Similarity=0.001 Sum_probs=106.0
Q ss_pred hhHHHHHhhHHHHHHHhCCCcchh--------------HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHH
Q 014047 229 GAGVTVLNNLAQIGVALGVNDTTE--------------LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMM 294 (431)
Q Consensus 229 ~~~~~~~~~l~~~~~~~g~s~~~~--------------~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~ 294 (431)
...++...+.|.++++.|++.... ...+..++..++.+++++++||+|||+.+ .++..++
T Consensus 302 ~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l------~~~~~~~ 375 (502)
T TIGR00887 302 IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ------LMGFFIL 375 (502)
T ss_pred HHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH------HHHHHHH
Confidence 344456667899998888764311 23344456677889999999999999766 3333333
Q ss_pred HHHHHHHHhh----hhh-HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhh
Q 014047 295 ILTFLLYASA----LSG-TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDA 369 (431)
Q Consensus 295 ~~~~~~~~~~----~~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~ 369 (431)
.+++.++... +.. .+.+..+...++..+..+..+.+.+|.+|++.|+++.|+.+....+++++ +|.+.+.+.+.
T Consensus 376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~-~~~~~~~l~~~ 454 (502)
T TIGR00887 376 TVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAII-GQFGFLYLAQH 454 (502)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHH-HHHHhhhhhcc
Confidence 3333322211 111 11111111112222334566778899999999999999999999999999 89899999885
Q ss_pred hhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 014047 370 EATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRP 412 (431)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 412 (431)
.+...+. ....++...|++.+++++++.+..+ +.++++.
T Consensus 455 ~~~~~~~---~~~~~~~~~~~i~~~~~~~~~i~~~-~lpEt~~ 493 (502)
T TIGR00887 455 GDPTKGY---PTGIWMGHVLEIFALFMFLGILFTL-LIPETKG 493 (502)
T ss_pred ccccccc---cccccchHHHHHHHHHHHHHHHHhe-EeccCCC
Confidence 4210000 0001256678888877777766543 3455544
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-15 Score=147.99 Aligned_cols=188 Identities=13% Similarity=0.085 Sum_probs=140.8
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCc--------c--hhHHHHHHHHHhhhhhhhhHHhHhhhcc
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--------T--TELLCLFSLCNFAGRLGSGVLSEHYVRS 278 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~--------~--~~~~s~~~i~~~ig~~~~G~lsDr~grr 278 (431)
.+.+|++.+|.+.+..++..........+.+.+.++.|.++ . ....++..+...++.+..|+++||+|+|
T Consensus 202 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r 281 (418)
T TIGR00889 202 FILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK 281 (418)
T ss_pred HHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 56788999888888777766555555566777887777553 1 2277778888999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHhhh--h---hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHH-HHHH
Q 014047 279 KAIPRTVWITCTHIMMILTFLLYASAL--S---GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFIL-LGNP 352 (431)
Q Consensus 279 ~~~~r~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~ 352 (431)
+.+ .++.++..+++..+.... . ..+++..++.|++.+...+....++.|.+|++.||++.|+.+ ....
T Consensus 282 ~~l------~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~ 355 (418)
T TIGR00889 282 KVM------LLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNG 355 (418)
T ss_pred HHH------HHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 776 555555555544443321 1 234556678888888888888899999999999999999997 5778
Q ss_pred hHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014047 353 IGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRI 410 (431)
Q Consensus 353 lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 410 (431)
+|..+ +|.++|.++|+.+... ..+|+.+|++.+++.+++.++.+++.++.
T Consensus 356 lg~~i-Gp~l~G~l~~~~g~~~-------~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 356 FGSLL-GYILSGVMVEKMFAYG-------TFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred hHHHH-HHHHHHHHHHHhcccc-------CCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999 8999999999865210 01399999999888888877777666544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-15 Score=145.06 Aligned_cols=173 Identities=15% Similarity=0.030 Sum_probs=127.2
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
+++.+|+|.+|...+..++.......+....|.+.++.|.+.... ..+...++..++.++.|++.||+++|+.+
T Consensus 198 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l---- 273 (382)
T PRK11128 198 WKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLL---- 273 (382)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH----
Confidence 478899999998888777766666566677788888888886654 66667788888899999999999998776
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHH-HHHHhHHHHHhhhHH
Q 014047 286 WITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFIL-LGNPIGALLFSGLLA 363 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~i~~p~i~ 363 (431)
..+.++..+..+.+...+ .+.+++..++.|++.+...+....++.+. +++++++..++.+ ....+|..+ +|.++
T Consensus 274 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i-g~~i~ 349 (382)
T PRK11128 274 --LLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAI-MTVLS 349 (382)
T ss_pred --HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 455555555544444333 34566677888999888877777777776 5566788888876 555677777 89999
Q ss_pred HHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHH
Q 014047 364 GKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
|.++|..+ + ..|+..+++.++++++
T Consensus 350 G~l~~~~g-------------~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 350 GFLYQHLG-------------A-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHhcc-------------H-HHHHHHHHHHHHHHHH
Confidence 99999886 4 4666666666555443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=142.22 Aligned_cols=172 Identities=15% Similarity=0.141 Sum_probs=124.0
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
.+.+|++.++......+........+..++|.+.++.|.+.... ..+...++..++++..|+++||+++|+.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l----- 268 (381)
T PRK03633 194 WPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVL----- 268 (381)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHH-----
Confidence 56778888776554444333333345567898988888886654 77788889999999999999999998665
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 287 ITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
..+..+..++...+. .........++.|++.+...+...+.+.|..|+++++...+..+....+|+.+ +|.+.|.+
T Consensus 269 -~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~i-gp~~~G~l 344 (381)
T PRK03633 269 -RVQVFVVILGSIAML--SQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLL-GPSFTAML 344 (381)
T ss_pred -HHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 344444444333322 12223344566677666667777788888888888888888888889999999 89999999
Q ss_pred HhhhhcccCCcccccccccHHHHHHHHHHHHHHHHH
Q 014047 367 YDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
.|+.+ +++.|++.+++.++..+.
T Consensus 345 ~~~~g-------------~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 345 MQNYS-------------DNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHhC-------------ccHHHHHHHHHHHHHHHH
Confidence 99887 889999887777655443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=145.85 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=115.3
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
++.+|++.+|...+..++.....+....++|.++++.|.+.... ..+...++..+++++.|+++||+++|+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~----- 265 (355)
T TIGR00896 191 VRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGI----- 265 (355)
T ss_pred chhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH-----
Confidence 45678888888777666666666777789999999888887654 88888999999999999999999554332
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhc-CCchhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 287 ITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFG-LKHFGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
...+.++..++...+............++.|++.|..++...+.+.+..+ +++++...++.+....++..+ +|.+.|.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-gp~~~G~ 344 (355)
T TIGR00896 266 VAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAAL-GPLFVGV 344 (355)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 13334444444433333222222234567899999888877777665554 456788899988888888888 8999999
Q ss_pred HHhhhhc
Q 014047 366 LYDAEAT 372 (431)
Q Consensus 366 i~~~~~~ 372 (431)
+.|+.++
T Consensus 345 l~~~~g~ 351 (355)
T TIGR00896 345 LHDISGN 351 (355)
T ss_pred HHHHhcc
Confidence 9998874
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=152.09 Aligned_cols=282 Identities=15% Similarity=0.189 Sum_probs=195.6
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQN-SATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVF 79 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~-~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (431)
++.| +||++..+++.+..-+|.++.-++.|.+.+. .+|+++|++.-.++++-.++-+.+-..++.+ + +....
T Consensus 155 ~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-h-~~is~---- 228 (466)
T KOG2532|consen 155 KWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-H-PNISE---- 228 (466)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-C-CCCCH----
Confidence 6788 7999999999999999999999999999988 8999999999888887777665433221111 1 10000
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCC
Q 014047 80 TQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTD 159 (431)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (431)
+ ++++- + .+.
T Consensus 229 ------------------------~--------------------------El~~I-~-------------------~~k 238 (466)
T KOG2532|consen 229 ------------------------K--------------------------ELKYI-E-------------------KGK 238 (466)
T ss_pred ------------------------H--------------------------HHHHH-H-------------------hcc
Confidence 0 00000 0 000
Q ss_pred CCCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHH
Q 014047 160 PLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239 (431)
Q Consensus 160 p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (431)
. + .+ ..+..+.+++++++++.+|.+++..++.....+.+..++|
T Consensus 239 ~-------------------------------~---~~--~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~P 282 (466)
T KOG2532|consen 239 S-------------------------------E---AH--VKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLP 282 (466)
T ss_pred c-------------------------------c---cc--cCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0 00 0111456789999999999999999999999999999999
Q ss_pred HHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCc----chHHHHHHHHHHHHHHHHHHHhhhh--hHHH
Q 014047 240 QIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAI----PRTVWITCTHIMMILTFLLYASALS--GTLY 310 (431)
Q Consensus 240 ~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~----~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 310 (431)
.|+++. |++.... +.+++.+...+..+++|.++||+-+| .+ .|+.+-.++....++.++.+.+.+. ....
T Consensus 283 tY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a 361 (466)
T KOG2532|consen 283 TYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLA 361 (466)
T ss_pred HHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHH
Confidence 999976 8886654 88899999999999999999999886 33 3455556666666666666655442 2222
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHH
Q 014047 311 AATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFL 390 (431)
Q Consensus 311 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~ 390 (431)
+.....+.+..+..............+++.+...|+.+....+.+++ +|.+.|.+..... .+.|+..|+
T Consensus 362 ~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~-~P~~vg~~~~~~t----------~~eW~~VF~ 430 (466)
T KOG2532|consen 362 VILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFI-APLLVGIIVTDNT----------REEWRIVFL 430 (466)
T ss_pred HHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHH-HHHheeeEeCCCC----------HHHHHHHHH
Confidence 22222333333332222222222225688999999999999999999 8999998884211 123999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014047 391 VLAGVCGLGTILSIILT 407 (431)
Q Consensus 391 ~~~~~~~i~~i~~~~~~ 407 (431)
+.+++.+++.++..++.
T Consensus 431 i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 431 IAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHhchheeEee
Confidence 99999988876655543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.5e-15 Score=163.80 Aligned_cols=258 Identities=15% Similarity=0.075 Sum_probs=180.5
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFT 80 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
+++| ++|+++.|+..+..++|.++||.++|++....+|++.|++.+.+++++++..+++...++ ++++.+.+
T Consensus 135 ~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---- 207 (1140)
T PRK06814 135 DHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGN---AAPDLKID---- 207 (1140)
T ss_pred hhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCeec----
Confidence 3566 789999999999999999999999999999999999997777777776666553321111 00000000
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCC
Q 014047 81 QAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDP 160 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 160 (431)
.++
T Consensus 208 -----------------------------------------------------------------------------~~~ 210 (1140)
T PRK06814 208 -----------------------------------------------------------------------------RNI 210 (1140)
T ss_pred -----------------------------------------------------------------------------cch
Confidence 000
Q ss_pred CCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHH
Q 014047 161 LLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240 (431)
Q Consensus 161 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (431)
..+ ....++.+.+++.+|...+..++.+.....+..++|.
T Consensus 211 -------------------~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 250 (1140)
T PRK06814 211 -------------------IRS---------------------TITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPL 250 (1140)
T ss_pred -------------------HHH---------------------HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 000 0001356778888999888888777777778788999
Q ss_pred HHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh--------------
Q 014047 241 IGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS-------------- 303 (431)
Q Consensus 241 ~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~-------------- 303 (431)
|+++. |.+.... +.+.+.++..+|.++.|+++|+.++++.+ ..+.++.+++.+.+..
T Consensus 251 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 324 (1140)
T PRK06814 251 LAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV------PIGALLMGLFGLDLAFASSSVPAEPAQLKS 324 (1140)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee------hHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99864 8877654 78888999999999999999988776655 2222222111111111
Q ss_pred -------hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCC
Q 014047 304 -------ALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGS 376 (431)
Q Consensus 304 -------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~ 376 (431)
.+.+.+++..++.|++.+......++++.+.+|++.+|+++|+.++...+|..+ +++++|.+.+...+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~i-g~~~~g~l~~~~~~---- 399 (1140)
T PRK06814 325 ILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVA-GTIILALLQALGFS---- 399 (1140)
T ss_pred hhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHH-HHHHHHHHHHhccC----
Confidence 223445666788899999888889999999999999999999999999999998 78888888764432
Q ss_pred cccccccccHHHHHHHHHHHHHHHHH
Q 014047 377 STCIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 377 ~~~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
+...|++.+++.++..++
T Consensus 400 --------~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 400 --------IPWIILFIALANLIVAIL 417 (1140)
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 666666555544444333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-15 Score=148.13 Aligned_cols=136 Identities=16% Similarity=0.174 Sum_probs=100.2
Q ss_pred hHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHH-HHHHhhh
Q 014047 230 AGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTF-LLYASAL 305 (431)
Q Consensus 230 ~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~-~~~~~~~ 305 (431)
.......++|.+.++ .|.+.... ..+...++..+++++.|+++||+|||+.+ .++.++..+.. ..+....
T Consensus 253 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~ 326 (405)
T TIGR00891 253 YSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY------VCSLLAGQLLIIPVFAIGA 326 (405)
T ss_pred HHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh------HHHHHHHHHHHHHHHHhCC
Confidence 334455677877764 58887654 77788899999999999999999999776 33333221221 1222222
Q ss_pred h-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhc
Q 014047 306 S-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEAT 372 (431)
Q Consensus 306 ~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~ 372 (431)
+ ..+.+..++.+++.++..+..++.++|.+|++++|++.|+.+....+|..+ +|.+.|.+.|+.++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-g~~~~g~l~~~~g~ 393 (405)
T TIGR00891 327 NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGAL-APIIGALLAQRLDE 393 (405)
T ss_pred chHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHH-HHHHHHHHHHhccc
Confidence 2 233444466677777777888899999999999999999999999999999 89999999998875
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-15 Score=149.76 Aligned_cols=160 Identities=9% Similarity=0.053 Sum_probs=110.2
Q ss_pred HHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh---hh-
Q 014047 233 TVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA---LS- 306 (431)
Q Consensus 233 ~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~---~~- 306 (431)
...++.|.+.++.|.+.... ......+.+.++.+++|+++||+|||+.+ ..+.++++++.+.+... +.
T Consensus 289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~------i~~~~~~~v~~~~l~~~~~~~~~ 362 (479)
T PRK10077 289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAFYTQAP 362 (479)
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH------HHhHHHHHHHHHHHHHHHhcCcc
Confidence 34566788888888876543 55567788899999999999999999776 55555555554443321 11
Q ss_pred -hHHHHHHHHHHHHhhhhh-hhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHH------hhhhcccCCcc
Q 014047 307 -GTLYAATVLLGVCYGVIY-SLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLY------DAEATKQGSST 378 (431)
Q Consensus 307 -~~~~~~~~l~G~~~g~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~------~~~~~~~~~~~ 378 (431)
.......++.+++.+..+ +..+.+++|.+|+++|+++.|+.+....+|..+ ++.+.+.+. +..+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~-~~~~~p~~~~~~~~~~~~~------- 434 (479)
T PRK10077 363 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYF-VSWTFPMMDKNSWLVAHFH------- 434 (479)
T ss_pred cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhccchhhhcc-------
Confidence 122333444555554433 567899999999999999999999999888888 555555443 3333
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 014047 379 CIGAECFRLTFLVLAGVCGLGTILSIILTIRIRP 412 (431)
Q Consensus 379 ~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 412 (431)
++..|++.+++++++.++.+++.+++++
T Consensus 435 ------~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 435 ------NGFSYWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred ------CccHHHHHHHHHHHHHHHHHhccccCCC
Confidence 7778888887777777766666665554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=148.56 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=106.8
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHI 292 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~ 292 (431)
+..+..++..++..........++|.+.++.|.+.... ..+...++..++++++|+++||+++|+.. ....+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~ 323 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA------LLLLL 323 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH------HHHHH
Confidence 44455555555555555667778887777888886654 77888899999999999999999988322 22222
Q ss_pred HHHHHHHHHH-hhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 293 MMILTFLLYA-SALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
.......+.. ..+....++..++.|++.+...+...+++.|.+|++.||++.|+.+....+|..+ +|.+.|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-g~~~~G~l 397 (398)
T TIGR00895 324 GAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAII-GPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHhHHhc
Confidence 2222222222 2233455666788899999999999999999999999999999999999999999 89888875
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.8e-15 Score=144.26 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=112.8
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHh-hhcccCcchHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEH-YVRSKAIPRTV 285 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr-~grr~~~~r~~ 285 (431)
++.++++.++...+..+...........++|.+.++.+.++... ..+...++...+....+++.|| ++.++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---- 277 (400)
T PRK11646 202 TRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRL---- 277 (400)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH----
Confidence 55677777776555544433333344567888888875454433 4455555554444444555554 4444322
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHH
Q 014047 286 WITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAG 364 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g 364 (431)
..+.++.+++.+.+...+. ..+.+..++.+++.+...+...+++.+.+|++++|+..|+.+....+|..+ +|.++|
T Consensus 278 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-g~~l~G 354 (400)
T PRK11646 278 --MAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAI-GYIGGG 354 (400)
T ss_pred --HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHh-cccchH
Confidence 3444444455444443332 334444567788888777888899999999999999999999999999999 899999
Q ss_pred HHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHH
Q 014047 365 KLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
.++|..++. ......|+..+++++++.+.
T Consensus 355 ~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 355 WLFDLGKAL---------NQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHhhc---------CCcchHHHHHHHHHHHHHHH
Confidence 999986421 01345666555555555444
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=144.47 Aligned_cols=155 Identities=14% Similarity=-0.082 Sum_probs=110.6
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
++.++++.+|...+..++.......+....|.++++ +|.++... ......++..+|+++.|+++||+++|+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~---- 284 (406)
T PRK15402 209 KLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLI---- 284 (406)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH----
Confidence 567788888888777666655555566667877654 58887654 44556678889999999999999988765
Q ss_pred HHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHh
Q 014047 286 WITCTHIMMILTFLLYASA------LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFS 359 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~ 359 (431)
.++.++..++..++... +...+++..++.|++.+...+......... +++++|+..++.++...++..+ +
T Consensus 285 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~-g 360 (406)
T PRK15402 285 --RMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTV-G 360 (406)
T ss_pred --HHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHH-H
Confidence 44444444443333221 123455666788888888776665555443 4588999999999999999998 7
Q ss_pred hhHHHHHHhhhh
Q 014047 360 GLLAGKLYDAEA 371 (431)
Q Consensus 360 p~i~g~i~~~~~ 371 (431)
+.+.+.+++..+
T Consensus 361 ~~~~~~l~~~~~ 372 (406)
T PRK15402 361 IELSKHAYLGGG 372 (406)
T ss_pred HHHHHhcccCCc
Confidence 889999988776
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.6e-15 Score=140.94 Aligned_cols=230 Identities=26% Similarity=0.332 Sum_probs=182.5
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFT 80 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
+++| ++|+++.|+.....++|..++|.+++.+.+..+|++.|++...+.+++.+...+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 174 (352)
T cd06174 114 EWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL------------------- 174 (352)
T ss_pred HhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 4677 59999999999999999999999999999888899999888877776666554222
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCC
Q 014047 81 QAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDP 160 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 160 (431)
T Consensus 175 -------------------------------------------------------------------------------- 174 (352)
T cd06174 175 -------------------------------------------------------------------------------- 174 (352)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHH
Q 014047 161 LLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240 (431)
Q Consensus 161 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (431)
|.++...+..++.......+..+.|.
T Consensus 175 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (352)
T cd06174 175 ------------------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPL 200 (352)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11233333444444555566677888
Q ss_pred HHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhccc-CcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHH
Q 014047 241 IGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSK-AIPRTVWITCTHIMMILTFLLYASAL-SGTLYAATVL 315 (431)
Q Consensus 241 ~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~-~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 315 (431)
+.++. |.+.... ..+...++..+++++.|+++||++||+ .+ ..+..+..++...+...+ ....++..++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 274 (352)
T cd06174 201 YLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLL------LIGLLLAALGLLLLALAPSLALLLVALLL 274 (352)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 88776 7776654 788888999999999999999999997 55 555555555655555443 3456777788
Q ss_pred HHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHH
Q 014047 316 LGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGV 395 (431)
Q Consensus 316 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 395 (431)
.|++.+...+....++.|.+|+++|++..|+.+....+|..+ +|.+.|.+.+..+ |+..|++.+++
T Consensus 275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~i~g~l~~~~~-------------~~~~~~~~~~~ 340 (352)
T cd06174 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGAL-GPLLAGLLLDTGG-------------YGGVFLILAAL 340 (352)
T ss_pred HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccC-------------cchHHHHHHHH
Confidence 999999999999999999999999999999999999999999 8889999998766 99999999988
Q ss_pred HHHHHHHHH
Q 014047 396 CGLGTILSI 404 (431)
Q Consensus 396 ~~i~~i~~~ 404 (431)
.+++.++..
T Consensus 341 ~~i~~i~~~ 349 (352)
T cd06174 341 ALLAALLLL 349 (352)
T ss_pred HHHHHHHhe
Confidence 888776543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-14 Score=138.43 Aligned_cols=175 Identities=14% Similarity=0.142 Sum_probs=105.1
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhh-HHHHHHHhCCCcchh--HHHHH-HHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVALGVNDTTE--LLCLF-SLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~s~~~~--~~s~~-~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
+++++|+|.+|...+..++..........+ .+.+.++.|++.... ..... .++..+|.+++|++.||+++|+..
T Consensus 202 ~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l-- 279 (402)
T PRK11902 202 LRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL-- 279 (402)
T ss_pred HHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Confidence 367888998887777665544433322233 344445578887665 33333 346789999999999999988655
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hh-hHHHHHHHH----HHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 284 TVWITCTHIMMILTFLLYASA-LS-GTLYAATVL----LGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l----~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
....+...+..+.+..+... ++ ..+++..++ .|++.+...+....++.+.+| ++..++.+....++..+
T Consensus 280 -~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~ 354 (402)
T PRK11902 280 -MLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS----ATQYALLSALASVGRVY 354 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHHHHH
Confidence 22222222222222222222 22 333333333 344444445555555555554 44556666666777776
Q ss_pred HhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHH
Q 014047 358 FSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILS 403 (431)
Q Consensus 358 ~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 403 (431)
.++ ++|.++|+.| |+..|.+.+++++++.++.
T Consensus 355 ~~~-~~G~l~~~~G-------------~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 355 VGP-TSGYLVEAYG-------------WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHH-HHHHHHHHhC-------------hHHHHHHHHHHHHHHHHHH
Confidence 454 8999999988 9999999888887776554
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=146.70 Aligned_cols=235 Identities=18% Similarity=0.269 Sum_probs=162.9
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFT 80 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
+.+| ++|+++.|+..+..++|..++|.+++.+.+..+||+.|++.....+++.++.......++++++.++++.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--- 188 (352)
T PF07690_consen 112 DWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE--- 188 (352)
T ss_dssp HCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---
T ss_pred ccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc---
Confidence 4678 499999999999999999999999999998889999999999999888775433332222111100000000
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCC
Q 014047 81 QAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDP 160 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 160 (431)
+ +.+++
T Consensus 189 ---------------------------------------------------~-----------------------~~~~~ 194 (352)
T PF07690_consen 189 ---------------------------------------------------S-----------------------KKPKP 194 (352)
T ss_dssp ----------------------------------------------------------------------------HHHC
T ss_pred ---------------------------------------------------c-----------------------ccccc
Confidence 0 00000
Q ss_pred CCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHH
Q 014047 161 LLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240 (431)
Q Consensus 161 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (431)
. . ..++..++++.+|...+..++..........++|.
T Consensus 195 -----------------------------------~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T PF07690_consen 195 -----------------------------------L-----K---PGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPL 231 (352)
T ss_dssp -----------------------------------C-----C---H-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------c-----c---cccccccccchhhhhhhhhhHHHHHHHHhhcccch
Confidence 0 0 01356777887885666666665566678888998
Q ss_pred H-HHHhCCC-cchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHH
Q 014047 241 I-GVALGVN-DTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA-LSGTLYAATVL 315 (431)
Q Consensus 241 ~-~~~~g~s-~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 315 (431)
+ .+.+|.+ .... ..++..+...+++++.|+++||+++|+.. ........+..+.+...... +....++..++
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (352)
T PF07690_consen 232 YLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRL---LIAILLLILGALGLLLLPFSSSPVWLIIALFL 308 (352)
T ss_dssp HCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHH
T ss_pred hhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8 4566888 4444 68888899999999999999999987554 22222222222222222222 23455667788
Q ss_pred HHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhh
Q 014047 316 LGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG 360 (431)
Q Consensus 316 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p 360 (431)
.|++.+...+....++.+.+|++++|++.|+.+....+|..+ +|
T Consensus 309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i-gP 352 (352)
T PF07690_consen 309 IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII-GP 352 (352)
T ss_dssp HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-CC
Confidence 999999999999999999999999999999999999999988 66
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=151.66 Aligned_cols=185 Identities=16% Similarity=0.116 Sum_probs=131.2
Q ss_pred hHhHHHHHHHHHHhhhhH----HHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHH
Q 014047 214 KADFWLLWFVYFLGVGAG----VTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWI 287 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~ 287 (431)
.+..|.+.+...+..... ..+...+|.+.+++|.+.... +.+...++.++|.+++|+++||+|||+.+
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l------ 235 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL------ 235 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------
Confidence 455555554444333222 234556777778888887654 78888999999999999999999999776
Q ss_pred HHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 288 TCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
.+++++..++.++..+.+ ...+++.+++.|++.|+..+..++++.|.+|++.||...++..++..+|..+ ++.++..+
T Consensus 236 ii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il-a~~la~~i 314 (742)
T TIGR01299 236 LICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY-AAAMAWAI 314 (742)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 455555555554444433 4567788899999999999999999999999999999999999999999998 77677666
Q ss_pred HhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 367 YDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
....+............+||+.|++.++.+++++++.++
T Consensus 315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 654432110001122345999998877766665554433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-14 Score=138.96 Aligned_cols=178 Identities=15% Similarity=0.142 Sum_probs=128.7
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh----CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCc
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL----GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAI 281 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~ 281 (431)
.++.+|++.+|...+..++..........+.+.+.++. +.+.... ..++..+...++.+..|++.||+|+|+.+
T Consensus 208 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l 287 (396)
T TIGR00882 208 ALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNAL 287 (396)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 46788999888776666555544445556677777764 2232222 66667788888999999999999999876
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHH-HHHHHHhHHHHHh
Q 014047 282 PRTVWITCTHIMMILTFLLYASA-LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNF-ILLGNPIGALLFS 359 (431)
Q Consensus 282 ~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~i~~ 359 (431)
.++.++.++....+... +.+.+++..++.|++..........+..+.++++.+++..+. .+....+|+.+ +
T Consensus 288 ------~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~-~ 360 (396)
T TIGR00882 288 ------LIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIF-L 360 (396)
T ss_pred ------HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHH-H
Confidence 55555555544443333 344556667778887766666666677888888888887776 56788999999 8
Q ss_pred hhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 360 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
+.+.|++.|..| |+.+|++.+++.++..++..+
T Consensus 361 ~~l~G~l~~~~G-------------~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 361 STLAGNMYDSIG-------------FQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHhHHHHHHhcc-------------cHHHHHHHHHHHHHHHHHHHH
Confidence 889999999887 999999998888877766543
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-13 Score=134.43 Aligned_cols=353 Identities=10% Similarity=0.004 Sum_probs=205.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCC------------------------
Q 014047 11 VSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPA------------------------ 66 (431)
Q Consensus 11 ~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~------------------------ 66 (431)
.-+...+.+-+|+++|+.+.+++.+..+++.-++++....+++.++..+-+..+-.
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmy 140 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMY 140 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34677889999999999999999999999999998888888777766654543322
Q ss_pred CCCCCCCccchHHHH-HHHHHHHHHHHHHHhh-cccc-ccchhHHHHHHHHHHHHH--Hhhhhhccccccccc-cccccc
Q 014047 67 SGEDSSEHGHFVFTQ-AASVFLAIYVVAISIT-SDYV-SLSDALSYILVAIMVVFM--LSPLAIPVKMTLFPA-TKKRIR 140 (431)
Q Consensus 67 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~-~~~~~~ 140 (431)
-.|-.+.+.++..+. .......+.+++.... .... +.+.|.+.......+.++ +.....|++|+|.-. ++++++
T Consensus 141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~ 220 (485)
T KOG0569|consen 141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEE 220 (485)
T ss_pred HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHH
Confidence 011122233333332 3333334444443322 2222 234566655555554444 344489999988654 333322
Q ss_pred cCCCCCcccccCCCCCCCCCCCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHH-
Q 014047 141 SAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWL- 219 (431)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 219 (431)
.+++-......+ +++++.+...++.+. .+.++.++.+++++++++..-.
T Consensus 221 A~~sl~~y~G~~-------------------------~~~~~~e~~~~e~~~-----~~~~~~~~~sl~~~~~~~~lR~~ 270 (485)
T KOG0569|consen 221 ARKALKFYRGKE-------------------------DVEAEIEEMLREIEE-----EELEKKKQISLRQLLKNPTLRRP 270 (485)
T ss_pred HHHHHHHHhCCC-------------------------cchhHHHHHHHHHHH-----hccccccCCcHHHHhcCcchhHH
Confidence 221100000000 001111110000000 0011234567788887654322
Q ss_pred ---HHHHHHHhhh-hHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHH
Q 014047 220 ---LWFVYFLGVG-AGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 220 ---~~~~~~~~~~-~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~ 293 (431)
.....++... .......+...++++.|++...+ .....++.+.+..+++.++.||+|||+.+ ..+..+
T Consensus 271 ~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLl------l~~~~~ 344 (485)
T KOG0569|consen 271 LLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLL------LISLSL 344 (485)
T ss_pred HHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH------HHHHHH
Confidence 2222222222 22234455566777789887765 77778899999999999999999999877 444433
Q ss_pred HHHHHHHHHh---hh----hh---HHHHHHHHHHHHhhhh-hhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhH
Q 014047 294 MILTFLLYAS---AL----SG---TLYAATVLLGVCYGVI-YSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLL 362 (431)
Q Consensus 294 ~~~~~~~~~~---~~----~~---~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i 362 (431)
+.+..+++.. .. .+ ..+.+.++..+.++.. .++.+-+.+|+||++.|..+.++......+..++ -...
T Consensus 345 ~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fi-v~~~ 423 (485)
T KOG0569|consen 345 MAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFI-VGFA 423 (485)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHH-HHHH
Confidence 3333332221 11 11 1233334444444433 3666788999999999999999999988888887 4556
Q ss_pred HHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 014047 363 AGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVY 414 (431)
Q Consensus 363 ~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~ 414 (431)
+-.+.+..|. +.|+...+.+++..+..+...+|+|.+.
T Consensus 424 fp~l~~~~g~--------------~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 424 FPPLQNVIGP--------------YVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred HHHHHHHhcc--------------hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 6677777662 4677777777777778888888887543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.1e-14 Score=137.68 Aligned_cols=174 Identities=16% Similarity=0.070 Sum_probs=123.0
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHH-HHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFS-LCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~-i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
++.+|+|.+|......++..........+.+.++++.|++.... ...... +...++.+++|++.||+|+|+..
T Consensus 202 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l---- 277 (390)
T TIGR02718 202 FRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF---- 277 (390)
T ss_pred HHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH----
Confidence 67788888887777777666656666667888888899998765 444443 46677899999999999998765
Q ss_pred HHHHHHHHHHH-HHHHHHhh-----h-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC-CchhhHHHHHHHHHHhHHHH
Q 014047 286 WITCTHIMMIL-TFLLYASA-----L-SGTLYAATVLLGVCYGVIYSLMVPTASELFGL-KHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 286 ~~~~~~~~~~~-~~~~~~~~-----~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~i 357 (431)
.++.++..+ ....+... . ....+...++.+++.|..++...+.+.+..++ +.+|+.+++.+....+|..+
T Consensus 278 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~ 355 (390)
T TIGR02718 278 --ILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELI 355 (390)
T ss_pred --HHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHH
Confidence 222222211 11111111 1 11223333445666777777777777777776 78999999999999999999
Q ss_pred HhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHH
Q 014047 358 FSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 358 ~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
+|.++|.++|..| |+..|++.+++.+++.++
T Consensus 356 -g~~~~G~l~~~~G-------------~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 356 -ASSIAGYLTDRFG-------------YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred -HHHHHHHHHHHHc-------------cHHHHHHHHHHHHHHHHH
Confidence 8999999999887 899999888777766544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-13 Score=136.69 Aligned_cols=174 Identities=15% Similarity=0.020 Sum_probs=114.8
Q ss_pred HHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
++++++.+........+...........+|.+.++ +|.++... ..+...++..+|.+..+++.||.++|+.+
T Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~----- 274 (393)
T PRK11195 200 VLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVL----- 274 (393)
T ss_pred HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH-----
Confidence 45555655544444444444444555566777765 48887665 77888899999999999999988877655
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCc-hhhHHHHHHHHHHhHHHHHhhhHHH
Q 014047 287 ITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKH-FGLIYNFILLGNPIGALLFSGLLAG 364 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~lg~~i~~p~i~g 364 (431)
..+.. ..+..+.+...++ +...+..++.|++.+...++..+.+.+..|++. +|++.++.++.++++..+ +..+.+
T Consensus 275 -~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~-~~~~~~ 351 (393)
T PRK11195 275 -PAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLL-MLGLYS 351 (393)
T ss_pred -HHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHH-HHHHHH
Confidence 33332 2222223333333 334455667888888888778888888755444 699999999999999999 676777
Q ss_pred HHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 365 KLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
.+ +..+ -+..+++.+...+++..+...
T Consensus 352 ~~-~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 352 LL-VKLG-------------VPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred HH-HHcC-------------CCHHHHHHHHHHHHHHHHHHH
Confidence 54 5665 667777666655555555443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-14 Score=139.56 Aligned_cols=229 Identities=13% Similarity=0.112 Sum_probs=153.8
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFT 80 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
+++| ++||++.|+..+...++..++|.+++.+.+..+||+.|++.....++..+..+... ++.+++.++ +
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~------ 190 (385)
T TIGR00710 120 DIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFIL--PETLPYEAR-I------ 190 (385)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCccc-C------
Confidence 4577 68999999999999999999999999998888999999887766666555544221 211100000 0
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCC
Q 014047 81 QAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDP 160 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 160 (431)
T Consensus 191 -------------------------------------------------------------------------------- 190 (385)
T TIGR00710 191 -------------------------------------------------------------------------------- 190 (385)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHH
Q 014047 161 LLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240 (431)
Q Consensus 161 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (431)
+..++ ..++++.+|++.+|...+...+.....+.+..+.|.
T Consensus 191 -----------------~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (385)
T TIGR00710 191 -----------------QISTY----------------------FETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPF 231 (385)
T ss_pred -----------------CHHHH----------------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChH
Confidence 00000 001245677888887777666666566666677788
Q ss_pred HHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh-----hh-hHHHH
Q 014047 241 IGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA-----LS-GTLYA 311 (431)
Q Consensus 241 ~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~ 311 (431)
+.+ ++|.++... ..+...++..+++++.|+++||+++|+.. ..+..+..++..++... .. ...+.
T Consensus 232 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (385)
T TIGR00710 232 VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL------RMGLILFAVSAVLLEITAILGLGSWAMIIG 305 (385)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH------HHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 776 558887654 67778889999999999999999998765 33333333332222211 11 23344
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 312 ATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 312 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
..++.|++.+...+.......|.+| +.+|++.++.+.....++.+.++ +.+.+
T Consensus 306 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~-~~~~~ 358 (385)
T TIGR00710 306 PMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGY-LVSLI 358 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 4567788888888888888888876 67899999988877765555466 55543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-14 Score=140.80 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=113.4
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh-HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE-LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~-~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
+++++++|.++...+..++............+.+.+.. +.+.... ..++..++..++.+++|+++||+|+|+.+
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~---- 290 (437)
T TIGR00792 215 FKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF---- 290 (437)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH----
Confidence 36678899999888877776666555555555555433 4222222 66667899999999999999999998766
Q ss_pred HHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhc-------CCchhhHHHHHHHHHHhHHH
Q 014047 286 WITCTHIMMILTFLLYASA--LSGTLYAATVLLGVCYGVIYSLMVPTASELFG-------LKHFGLIYNFILLGNPIGAL 356 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~ 356 (431)
..+.++.+++.+.+... +....++..++.|++.+...+..+++++|..+ ++.+|...|+.+....+|..
T Consensus 291 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~ 368 (437)
T TIGR00792 291 --AGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQA 368 (437)
T ss_pred --HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHH
Confidence 44444444444443332 22344555677888898888888899888764 56689999999999999999
Q ss_pred HHhhhHHHHHHhhhh
Q 014047 357 LFSGLLAGKLYDAEA 371 (431)
Q Consensus 357 i~~p~i~g~i~~~~~ 371 (431)
+ ++.+.|.+.+..|
T Consensus 369 l-g~~i~g~ll~~~G 382 (437)
T TIGR00792 369 L-AGFLVGLILGIIG 382 (437)
T ss_pred H-HHHHHHHHHHHcC
Confidence 9 8889999998765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=145.24 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=136.2
Q ss_pred hhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHH
Q 014047 213 VKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCT 290 (431)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~ 290 (431)
+...++...+..++.+.....+...+|.+.+++|.+..+. +.+.+.++..+++++.|+++||+|||+.+ .++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~------~~~ 94 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM------GIG 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH------HHH
Confidence 3344455555555555555567788999999999987765 88889999999999999999999999877 666
Q ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhh
Q 014047 291 HIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDA 369 (431)
Q Consensus 291 ~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~ 369 (431)
.++..++.++....++ ..+++..++.|++.|..++...+++.+.+++++||++.|+.+.+..+|..+ +|.+.+.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~ 173 (434)
T PRK11663 95 LIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGAL-IPLVVGAIALH 173 (434)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence 6666666665554443 455666778899888888888899999999999999999999999999999 78899999887
Q ss_pred hhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 370 EATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
.+ ||+.|++.++++++..++..+
T Consensus 174 ~g-------------w~~~f~~~~i~~~~~~~~~~~ 196 (434)
T PRK11663 174 YG-------------WRYGMMIAGIIAIVVGLFLCW 196 (434)
T ss_pred cc-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 76 999999888766655444333
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=142.26 Aligned_cols=174 Identities=9% Similarity=-0.028 Sum_probs=120.1
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh---CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL---GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
++.+|++++|...+..++.......+..+.+.+.... +.+.... ......+.....++..|++.||.++|+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-- 277 (395)
T PRK10054 200 SVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLM-- 277 (395)
T ss_pred hhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHH--
Confidence 4567888888887777766655555555666666443 3333322 55555566667778889999999988665
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhh
Q 014047 284 TVWITCTHIMMILTFLLYASA-LS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGL 361 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~ 361 (431)
..++.+..++...+... ++ ..+.+..++.|+|.+...+.....+.+..|++.+|+.++..+ ...+|..+ ||.
T Consensus 278 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~-Gp~ 351 (395)
T PRK10054 278 ----TAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAI-NPL 351 (395)
T ss_pred ----HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHH-HHH
Confidence 45555555555444332 22 334556678888888777777888999999999999988765 55688888 899
Q ss_pred HHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHH
Q 014047 362 LAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILS 403 (431)
Q Consensus 362 i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 403 (431)
++|.++|+.+ +...|++.+.+..++.++.
T Consensus 352 ~~G~l~~~~g-------------~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 352 VSGVILTTLP-------------PWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HHHHHHHHcC-------------hhhHHHHHHHHHHHHHHHH
Confidence 9999999987 7777777666555554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-14 Score=136.29 Aligned_cols=174 Identities=23% Similarity=0.232 Sum_probs=155.4
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHI 292 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~ 292 (431)
...+.+.++.|+.....+.....+|++.+++|.|...+ .++.+.++..++.|+...++||+.||+++ ...+.
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lL------l~~l~ 86 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLL------LGLLA 86 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH------HHHHH
Confidence 35567788888888889999999999999999998876 99999999999999999999999999887 77777
Q ss_pred HHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhh
Q 014047 293 MMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 293 ~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~ 371 (431)
++.++.++.+..++ ..+.+++++.|+..|.+++...++.+++.|+++|+++.++++++..++..+ |..++.++-|..|
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~-GvPLGt~ig~~~G 165 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVL-GVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHH-hccHHHHHHHHhh
Confidence 77788877776655 577888999999999999999999999999999999999999999999999 5669999999998
Q ss_pred cccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 014047 372 TKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTI 408 (431)
Q Consensus 372 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 408 (431)
||.+|+..+++.+++.+..+...+
T Consensus 166 -------------WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 166 -------------WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999888877766655
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-13 Score=126.47 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=138.2
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
..++|+|.-|.+.+.+.+.+...|..+.|+|.++.|.|+|+..+ .++...+......+....+.+|...++.+
T Consensus 202 ~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~----- 276 (395)
T COG2807 202 RKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPL----- 276 (395)
T ss_pred cccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchH-----
Confidence 45889999999999999999999999999999999999998876 89999999999999999999986444433
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhc-CCchhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 287 ITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFG-LKHFGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
.....+++.++...+.+.+....+...++.|+|.|+.++..-..+.+... ++..+...|+.+..+.+-..+ ||.+.|+
T Consensus 277 ~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~-GP~l~G~ 355 (395)
T COG2807 277 VVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAF-GPWLFGF 355 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhh-hhhhHhH
Confidence 24444444455444444333334444689999999999999999888764 344566777777666666666 8999999
Q ss_pred HHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 366 LYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 366 i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
+.|..++ |+.+++..+.+.++..+..+.
T Consensus 356 lhDa~gs------------w~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 356 LHDATGS------------WSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHHhcCC------------hHHHHHHHHHHHHHHHHHHhh
Confidence 9999987 999988877766665555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-14 Score=138.19 Aligned_cols=138 Identities=16% Similarity=0.038 Sum_probs=97.8
Q ss_pred HHHhhhHh---HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHH-HHHhhhhhhhhHHhHhhhcccCcc
Q 014047 209 GEAFVKAD---FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFS-LCNFAGRLGSGVLSEHYVRSKAIP 282 (431)
Q Consensus 209 ~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~-i~~~ig~~~~G~lsDr~grr~~~~ 282 (431)
+++++++. ++.+.+..++.....+....++|.+++++|++.... ..+... ++..++.+++|+++||+|+|+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l- 278 (356)
T TIGR00901 200 REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL- 278 (356)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH-
Confidence 45556654 666666666666666677788999988888887765 444444 57789999999999999998775
Q ss_pred hHHHHHHHHHHHHHHHHHHHh---h--------h-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHH
Q 014047 283 RTVWITCTHIMMILTFLLYAS---A--------L-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLG 350 (431)
Q Consensus 283 r~~~~~~~~~~~~~~~~~~~~---~--------~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 350 (431)
..+.++..+...++.. . + ...+....++.+++.+...+...++++|.+|++++|+.+|+.+..
T Consensus 279 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 353 (356)
T TIGR00901 279 -----LLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSL 353 (356)
T ss_pred -----HHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 3333333333332221 1 1 133445556778999999999999999999999999999998876
Q ss_pred HH
Q 014047 351 NP 352 (431)
Q Consensus 351 ~~ 352 (431)
.+
T Consensus 354 ~~ 355 (356)
T TIGR00901 354 SA 355 (356)
T ss_pred Hh
Confidence 54
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-13 Score=134.40 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=105.8
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
++.+|++++|...+...+.....+.+..+.|.+.++.|++.... ......++..+|+++.+++.||+++|+.. ..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~---~~ 273 (401)
T PRK11043 197 KQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL---PW 273 (401)
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH---HH
Confidence 56677777776666555555555566778888888888887654 45566778889999999999999988654 12
Q ss_pred HHHHHHHHHHHHHHHHh--hh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH
Q 014047 287 ITCTHIMMILTFLLYAS--AL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
..+...+..+....... .+ ....++...+.|++.+..++...+...+.+| +++|++.|+.+.....++.. ++.+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~-~~~~~ 351 (401)
T PRK11043 274 LLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFL-ASLLV 351 (401)
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHH-HHHHH
Confidence 22222222222222222 11 2233444566788888888877777777765 67999999999887777777 66688
Q ss_pred HHHHhhh
Q 014047 364 GKLYDAE 370 (431)
Q Consensus 364 g~i~~~~ 370 (431)
|.+.+..
T Consensus 352 g~l~~~~ 358 (401)
T PRK11043 352 SALISTP 358 (401)
T ss_pred HHccCCC
Confidence 8777643
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-13 Score=133.58 Aligned_cols=150 Identities=11% Similarity=0.071 Sum_probs=86.8
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
++.+|++.++...+...+.......+..+.|.+.+ ++|++.... ..+...++..+++++.|++.||+|||+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~---- 272 (392)
T PRK10473 197 SESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLM---- 272 (392)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH----
Confidence 45667777766555554444444445556676665 458887654 67778889999999999999999998765
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCch-hhHHHHHHHHHHhHHHHHhhhHH
Q 014047 286 WITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHF-GLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
.++.++..++...+.... ....++...+.+.|.+..++. ....+..|.+++ |.+.++ ..++..+ ++.++
T Consensus 273 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~----~~~~~~~-g~~~~ 343 (392)
T PRK10473 273 --LTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSLRAGVASST----LGIAQVC-GSSLW 343 (392)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccccHHHHH----HHHHHHH-HHHHH
Confidence 444444444444333322 223333334444444443332 233444454433 334433 4455555 55566
Q ss_pred HHHHhhhh
Q 014047 364 GKLYDAEA 371 (431)
Q Consensus 364 g~i~~~~~ 371 (431)
+++.++.+
T Consensus 344 ~~l~~~~g 351 (392)
T PRK10473 344 IWLAAVLG 351 (392)
T ss_pred HHHHHHhc
Confidence 77777666
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-13 Score=131.60 Aligned_cols=230 Identities=11% Similarity=0.057 Sum_probs=140.6
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHH
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFT 80 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
+++| ++|+++.|+.....++|..++|.+++.+.+..+||+.|++...+.++..+...+.. ++..+++++++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----- 178 (377)
T PRK11102 106 DMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFI--PETLPKERRQPF----- 178 (377)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC--CccCcccccCCC-----
Confidence 3577 67999999999999999999999999998888999999988777766655544221 111100000000
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCC
Q 014047 81 QAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDP 160 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 160 (431)
T Consensus 179 -------------------------------------------------------------------------------- 178 (377)
T PRK11102 179 -------------------------------------------------------------------------------- 178 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHH
Q 014047 161 LLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240 (431)
Q Consensus 161 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (431)
+.++ ...+.++.++++.++...+..++.......+..+.|.
T Consensus 179 ------------------~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (377)
T PRK11102 179 ------------------HLRT---------------------TIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPF 219 (377)
T ss_pred ------------------ChHH---------------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 0000 0001245677777777666666655555566666676
Q ss_pred HHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-h-hHHHHHHHH
Q 014047 241 IGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-S-GTLYAATVL 315 (431)
Q Consensus 241 ~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l 315 (431)
+..+ .|.++... ..+...++..+++++.|++.||+|+|+.+ ........+..+........+ . ....+...+
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNML---RFGLWIQFIMGIWLVVSALLDLGFWALVVGVAA 296 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6654 58887654 77788889999999999999999998765 111111122222222221111 1 222333334
Q ss_pred HHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHH-HhHHHHHhhhH
Q 014047 316 LGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGN-PIGALLFSGLL 362 (431)
Q Consensus 316 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~lg~~i~~p~i 362 (431)
.+.+.+.........+.|..| +.+|++.++.+... .+|+.+ ++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~-g~~~ 342 (377)
T PRK11102 297 FVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIV-GALL 342 (377)
T ss_pred HHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHH-HHHH
Confidence 444444444445556677665 78899998877543 355555 5533
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-14 Score=141.98 Aligned_cols=173 Identities=20% Similarity=0.265 Sum_probs=141.1
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHI 292 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~ 292 (431)
+.+|.+.+..++.......+..++|.+.+++|.+.... ..+.+.++..++.+++|+++||+|||+.+ ..+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~ 83 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF------FTAIV 83 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH------HHHHH
Confidence 45788888888877777788889999999999997764 67888889999999999999999999776 44444
Q ss_pred HHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhh
Q 014047 293 MMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 293 ~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~ 371 (431)
+..++.+.+...+ ...+++..++.|++.+...+...+++.|.+|++++++++|+......+|..+ +|.++|.+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~g~l~~~~g 162 (471)
T PRK10504 84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLL-GPALGGLLVEYAS 162 (471)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhhcc
Confidence 4444444443333 3566778899999999999999999999999999999999999999999998 8989999998776
Q ss_pred cccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 372 TKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 372 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
||+.|++...++.++.++.....
T Consensus 163 -------------w~~~f~~~~~~~~l~~~~~~~~~ 185 (471)
T PRK10504 163 -------------WHWIFLINIPVGIIGAIATLMLM 185 (471)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999998887777766655443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-12 Score=129.73 Aligned_cols=175 Identities=12% Similarity=0.011 Sum_probs=107.0
Q ss_pred hhHHHHHhhHHHHHHH-hCC-----Ccc-hhHHHHHHHHHhhhhhhhhHHhHhhhcccCcc-hHHHHHHHHHHHHHHHHH
Q 014047 229 GAGVTVLNNLAQIGVA-LGV-----NDT-TELLCLFSLCNFAGRLGSGVLSEHYVRSKAIP-RTVWITCTHIMMILTFLL 300 (431)
Q Consensus 229 ~~~~~~~~~l~~~~~~-~g~-----s~~-~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~-r~~~~~~~~~~~~~~~~~ 300 (431)
.......+.++.+.++ .+. ... ..+.++..+...+..|+.|++.||+++|+.-+ ...-+.+++++.+++++.
T Consensus 283 ~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~ 362 (489)
T PRK10207 283 ILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLT 362 (489)
T ss_pred HHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3333444566767664 222 211 22555566777788899999999999986311 111124444444444432
Q ss_pred H-------Hhh----hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhh
Q 014047 301 Y-------ASA----LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDA 369 (431)
Q Consensus 301 ~-------~~~----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~ 369 (431)
+ ... +.++++...++.|+|.+...++..+.+.+..|++.+|.+.|+.++..++|+.+ +..+.+.....
T Consensus 363 ~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~l-g~~l~~~~~~~ 441 (489)
T PRK10207 363 AAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLL-GGYVATFTAVP 441 (489)
T ss_pred HHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccc
Confidence 1 111 12355667789999999999999999999999999999999999999999998 55455543211
Q ss_pred hhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 370 EATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
....+. -.....|.+.|...++.++++.++.+++.
T Consensus 442 ~~~~~~---~~~~~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 442 DNITDP---LETLPVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred cccccc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100000 00001266777777776666665555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.8e-14 Score=137.38 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHH
Q 014047 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~ 293 (431)
.+|.+.+..++.....+.....+|.+.+++|.+..+. ..+.+.++..++.+.+|+++||+|||+.+ ..+.++
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~ 83 (390)
T PRK03545 10 RVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLL------IGLFVL 83 (390)
T ss_pred HHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH------HHHHHH
Confidence 3445444444433333344456788889999988775 78888889999999999999999999877 666666
Q ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhc
Q 014047 294 MILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEAT 372 (431)
Q Consensus 294 ~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~ 372 (431)
.+++.+.....+ .+.+++.+++.|++.+...+...+++.|.+|+++|+++.|+...+..+|..+ +|.+.+.+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~i-g~~l~~~l~~~~g- 161 (390)
T PRK03545 84 FIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVL-GLPLGRVIGQYLG- 161 (390)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHH-HhhHHHHHHHHhc-
Confidence 666666655544 3567777889999988888888899999999999999999999999999999 8889998888776
Q ss_pred ccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 373 KQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 373 ~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
||++|++.++++++..+..+.
T Consensus 162 ------------w~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 162 ------------WRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887776555444
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.4e-14 Score=137.04 Aligned_cols=172 Identities=12% Similarity=0.053 Sum_probs=133.0
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTH 291 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~ 291 (431)
++++.+.+..++.........+++|.+++ ++|++..+. ..+...++..++++..|+++||+|||+.+ .++.
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~------~~~~ 80 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM------LLAI 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH------HHHH
Confidence 45777888888887777788888888876 569998765 77778889999999999999999999876 4555
Q ss_pred HHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 292 IMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 292 ~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
++..++.+.+.+.++ +..++...+.|.+.+...+...+...|.+++++|+++.|+.+...++|..+ +|.+++.+.+ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~i-gp~l~~~l~~-~ 158 (395)
T PRK10054 81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTV-GPPLGTLLVM-Q 158 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-h
Confidence 555555555544443 344445566677777777778889999999999999999999999999999 8989988874 4
Q ss_pred hcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 371 ATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
+ |+.+|++.+++.+++.++..+..
T Consensus 159 g-------------~~~~f~~~~~~~~i~~i~~~~~~ 182 (395)
T PRK10054 159 S-------------INLPFWLAAICSAFPLVFIQIWV 182 (395)
T ss_pred c-------------cCcHHHHHHHHHHHHHHHHHHHH
Confidence 4 99999988888777765554433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-13 Score=132.79 Aligned_cols=174 Identities=13% Similarity=0.027 Sum_probs=120.4
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhC--CCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALG--VNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRT 284 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~ 284 (431)
++.+|+|.++...+..++..+.......+++.|.++.+ .+.... ..+....+..+||+++|++.||+++|+.+
T Consensus 226 ~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l--- 302 (410)
T TIGR00885 226 SRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVL--- 302 (410)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH---
Confidence 56788899888888877777776677788888887653 333222 56666788899999999999999988765
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHH
Q 014047 285 VWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAG 364 (431)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g 364 (431)
.+..++..+.+++....+........++.|++.+..++...+...+..+++....+.++... .+|+.+ .|.+.|
T Consensus 303 ---~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~-~p~l~G 376 (410)
T TIGR00885 303 ---MAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGI-VPPLQG 376 (410)
T ss_pred ---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--Hhccch-HHHHHH
Confidence 44444444444444443333446667788899999999999999999986654334444333 388888 788999
Q ss_pred HHHhhhhcccCCcccccccccHHHHHHHHHHHHH
Q 014047 365 KLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGL 398 (431)
Q Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i 398 (431)
.+.|..+.... .+++.+|++...+.+.
T Consensus 377 ~~~d~~~~~~~-------~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 377 FIIDMKEIAAA-------PAVNTSFILPLLCFAV 403 (410)
T ss_pred HHHHHhccccc-------CccchHHHHHHHHHHH
Confidence 99996521000 0277888875555443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=136.49 Aligned_cols=156 Identities=14% Similarity=0.114 Sum_probs=127.6
Q ss_pred hhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh
Q 014047 227 GVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA 304 (431)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~ 304 (431)
.....+.....+|.+.+++|.+..+. ..+...++..+++++.|+++||+|||+.+ ..+.++.+++.+.....
T Consensus 32 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~ 105 (394)
T PRK10213 32 LIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVV------ILFAVLLTLSCLLVSFA 105 (394)
T ss_pred HHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH------HHHHHHHHHHHHHHHHH
Confidence 33344455557888889999988765 77888999999999999999999999877 66666666665555544
Q ss_pred h-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccccccc
Q 014047 305 L-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAE 383 (431)
Q Consensus 305 ~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~ 383 (431)
+ .+.+++.+++.|++.|...+...+++.|.+|+++|+++.++...+..+|..+ +|.+++.+.+..+
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~~~l~~~~g------------ 172 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVI-AAPLGSFLGELIG------------ 172 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcC------------
Confidence 3 4577888899999999999999999999999999999999999999999999 8989999988776
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 014047 384 CFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 384 ~~~~~f~~~~~~~~i~~i~ 402 (431)
||+.|++.+++++++.+.
T Consensus 173 -w~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 173 -WRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 999999887766654433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-14 Score=137.25 Aligned_cols=164 Identities=23% Similarity=0.279 Sum_probs=131.5
Q ss_pred HHHHHhhhhHHHHHhhHH-HHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHH
Q 014047 222 FVYFLGVGAGVTVLNNLA-QIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTF 298 (431)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~ 298 (431)
+..++.......+...+| .+.+++|.+..+. ..+...++..++.++.|+++||+|||+.+ .++.++.+++.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~ 76 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVL------IIGLLLFALGS 76 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE------eehhhhhhhHH
Confidence 444555555556777778 6667778887765 88889999999999999999999999866 56666666663
Q ss_pred HHHHh-hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCc
Q 014047 299 LLYAS-ALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSS 377 (431)
Q Consensus 299 ~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~ 377 (431)
+...+ .+.+.+++..++.|++.+...+...+++.|.+|+++|+++.++......+|..+ +|.+++.+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~~------ 149 (352)
T PF07690_consen 77 LLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSIL-GPLLGGFLISYFG------ 149 (352)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHCH------
T ss_pred HHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhc-ccchhhhhhhccc------
Confidence 33333 344567888899999999999999999999999999999999999999999999 8989999887776
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 378 TCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 378 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
|++.|++.+++++++.++...
T Consensus 150 -------~~~~~~~~~~~~~~~~il~~~ 170 (352)
T PF07690_consen 150 -------WRWAFLISAILSLIAAILFIL 170 (352)
T ss_dssp -------HCCHHHHHHHHHHHHHHHHHC
T ss_pred -------cccccccccchhhhhhhhHhh
Confidence 999999999988888765333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=137.08 Aligned_cols=180 Identities=12% Similarity=0.114 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHH
Q 014047 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~ 293 (431)
.++.+++.+++.+..........|.+.+++|.+..+. ..+.+.++..++.+..|+++||+|||+.+ .+++++
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~------~~~~~~ 82 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI------AGIMVL 82 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH------HHHHHH
Confidence 4455555555555556666667787778889887775 88899999999999999999999999876 666666
Q ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhc
Q 014047 294 MILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEAT 372 (431)
Q Consensus 294 ~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~ 372 (431)
..++.+..+..+ ...+++.+++.|++.+...+....++.|.+|+++||++.|+.+.+..+|..+ ++.+.+++.+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL-GLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCC
Confidence 666666655543 4567888899999999998888889999999999999999999999999999 78888888753110
Q ss_pred ccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 373 KQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 373 ~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
.+..+||++|++.++..++..++.+++.++
T Consensus 162 -------~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~ 191 (412)
T TIGR02332 162 -------MALKGWQWLFLLEGFPSVILGVMTWFWLDD 191 (412)
T ss_pred -------CCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence 001239999999887776655555444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-14 Score=135.52 Aligned_cols=169 Identities=11% Similarity=0.055 Sum_probs=132.4
Q ss_pred HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHH
Q 014047 218 WLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMI 295 (431)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~ 295 (431)
|.+....++...........+|.+..+.+.+.... ..+...++..++.+++|+++||+|||+.+ ..+.++..
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~------~~~~~~~~ 75 (365)
T TIGR00900 2 RLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM------IGADLIRA 75 (365)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH------HHHHHHHH
Confidence 34555666666666667778888888888876654 88888999999999999999999999877 44444433
Q ss_pred HHHHHHHhh------hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhh
Q 014047 296 LTFLLYASA------LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDA 369 (431)
Q Consensus 296 ~~~~~~~~~------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~ 369 (431)
++..+.... +.+.+++..++.|++.+...+...++++|.+|+++|+++.++.+.+..+|..+ +|.+++.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~ 154 (365)
T TIGR00900 76 VLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIV-GPGIGGLMYAT 154 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 333333222 33566777889999999999999999999999999999999999999999999 89899999888
Q ss_pred hhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 370 EATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
.+ |++.|++.++..+++.++.+..
T Consensus 155 ~g-------------~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 155 LG-------------IKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred hh-------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 77 9999998877766665554443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=138.86 Aligned_cols=172 Identities=16% Similarity=0.127 Sum_probs=138.7
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHH
Q 014047 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMM 294 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~ 294 (431)
+..+.+..++.......+...+|.+.+++|.+..+. ..+.+.++..++.+.+|+++||+|||+.+ ..+.++.
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l------~~~~~~~ 81 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL------MLGGTLF 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHH
Confidence 445555566666666677788999999998876553 88889999999999999999999999887 6677777
Q ss_pred HHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhh-cCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhc
Q 014047 295 ILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELF-GLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEAT 372 (431)
Q Consensus 295 ~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~ 372 (431)
.++.+.+...+ .+.+++.+++.|+|.+...+.....+.+.+ ++++|+++.|+......+|..+ +|.++|.+.++.+
T Consensus 82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~-gp~lgg~l~~~~g- 159 (495)
T PRK14995 82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF-GPLVGGILLEHFY- 159 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCC-
Confidence 77766666544 456788889999999988887777777776 6688999999999999999999 8999999998876
Q ss_pred ccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 014047 373 KQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTI 408 (431)
Q Consensus 373 ~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 408 (431)
||+.|++...+++++.++.++..+
T Consensus 160 ------------wr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 160 ------------WGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999988877777666555443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=134.27 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=140.1
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHI 292 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~ 292 (431)
+.++.+.+..++.......+...+|.+.+++|.+.... ..+...++..++++++|+++||+|||+.+ .++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~ 76 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHIL------LFLVA 76 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHH------HHHHH
Confidence 45667777777777777788889999999999987664 88999999999999999999999999887 66666
Q ss_pred HHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhh
Q 014047 293 MMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 293 ~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~ 371 (431)
+.+++.++....+ .+.+++.+++.|++.+...+....++.+.+++++++++.++...+..+|..+ +|.+++.+.+..+
T Consensus 77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~g 155 (382)
T PRK10091 77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLL-GIPLGTYLSQEFS 155 (382)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHH-hccHHHHHhhhcc
Confidence 6666666655544 4567778899999999888888888999999889999999999999999999 7888898888766
Q ss_pred cccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 372 TKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 372 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
||++|++.+++.++..+..+.
T Consensus 156 -------------wr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 156 -------------WRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877666554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-13 Score=132.14 Aligned_cols=168 Identities=15% Similarity=0.199 Sum_probs=131.8
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHI 292 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~ 292 (431)
+.+...++..++............|.+.+++|.+..+. ..+...++..++.++.|+++||+|||+.+ .++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~ 85 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPM------VTSIV 85 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHH
Confidence 33455566666666666667777888888889987765 88889999999999999999999999876 55555
Q ss_pred HHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhh
Q 014047 293 MMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 293 ~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~ 371 (431)
+..++.+.....+ ...+++..++.|++.+...+...+++.|.+++++|+++.++.+.+..+|..+ ++.+.+.+.+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~l~~~l~~~~~ 164 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV-AAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Confidence 5555555554443 3466777899999999999999999999999999999999999999999999 7888888877654
Q ss_pred cccCCcccccccccHHHHHHHHHHHHHHH
Q 014047 372 TKQGSSTCIGAECFRLTFLVLAGVCGLGT 400 (431)
Q Consensus 372 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~ 400 (431)
.+|++.|++.++..++..
T Consensus 165 -----------~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 165 -----------DGWRALFFISILPIIFAL 182 (405)
T ss_pred -----------ccHHHHHHHHHHHHHHHH
Confidence 239999987665555443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-12 Score=144.07 Aligned_cols=177 Identities=18% Similarity=0.112 Sum_probs=127.1
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcc-hh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDT-TE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~-~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
+..+++++.+|...+..++.......+..++|.++++ +|.+.. .. +.+...++.+++.+++|+++||+++++.+
T Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~-- 302 (1146)
T PRK08633 225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLV-- 302 (1146)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccch--
Confidence 3567788888888777777766666777788888765 588876 44 77778899999999999999999988766
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhH
Q 014047 284 TVWITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLL 362 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i 362 (431)
.++.++++++.+++.... ...+++..++.|++.+...+...+++.+.+|++.+|+++|+.++...+|..+ ++.+
T Consensus 303 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~-~~~~ 377 (1146)
T PRK08633 303 ----PLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL-FLAL 377 (1146)
T ss_pred ----hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHH-HHHH
Confidence 444444444444443332 3455666788899999888888899999999999999999999999998877 6655
Q ss_pred HHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHH
Q 014047 363 AGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILS 403 (431)
Q Consensus 363 ~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 403 (431)
++.+.. .+ ..+...|++.+.+.++..+..
T Consensus 378 ~~~l~~-~~-----------~~~~~~~~~~~~~~~~~~~~~ 406 (1146)
T PRK08633 378 TTLFSG-LG-----------LSPAGLFYLIALVTLIGTLYT 406 (1146)
T ss_pred HHHHHH-hc-----------cCHHHHHHHHHHHHHHHHHHH
Confidence 554433 32 115556666555554444333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-13 Score=133.00 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=131.3
Q ss_pred HhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh
Q 014047 226 LGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS 303 (431)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~ 303 (431)
........+...+|.+.+++|.+..+. ..+.+.++..++.+++|+++||+|||+.+ ..+.++..++.+....
T Consensus 16 ~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~ 89 (385)
T TIGR00710 16 LGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL------LLGLFIFALSSLGLAL 89 (385)
T ss_pred HHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHHHHHHHHHHHHHH
Confidence 334444566677888889999987765 88888999999999999999999999776 5555555566555554
Q ss_pred hh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccc
Q 014047 304 AL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGA 382 (431)
Q Consensus 304 ~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~ 382 (431)
.+ ...+++.+++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+ +|.+.+.+.+..+
T Consensus 90 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~----------- 157 (385)
T TIGR00710 90 SNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAV-APLLGGYILVWLS----------- 157 (385)
T ss_pred HccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-----------
Confidence 44 3466777889999999999999999999999999999999999999999998 8889999888776
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHh
Q 014047 383 ECFRLTFLVLAGVCGLGTILSIILTI 408 (431)
Q Consensus 383 ~~~~~~f~~~~~~~~i~~i~~~~~~~ 408 (431)
|+.+|++.+++.++..++.++..+
T Consensus 158 --~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 158 --WHAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999888877776666554433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-13 Score=132.71 Aligned_cols=171 Identities=20% Similarity=0.153 Sum_probs=129.0
Q ss_pred HHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHH
Q 014047 219 LLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMIL 296 (431)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~ 296 (431)
..+...++............|.+.+++|.+..+. ..+...++..++.++.|+++||+|||+.+ ..+.++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~ 92 (406)
T PRK11551 19 LCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL------IVSVALFGL 92 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence 3333444444444455666788888999987765 88888999999999999999999999887 445444444
Q ss_pred HHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccC
Q 014047 297 TFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQG 375 (431)
Q Consensus 297 ~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~ 375 (431)
+.+.....+ ...+++..++.|++.+...+...+++.|.+++++|+++.++.+.+..+|..+ ++.+.+.+.+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---- 167 (406)
T PRK11551 93 FSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL-ASVIGVLAAGDAA---- 167 (406)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccccC----
Confidence 444444333 3566777899999999999999999999999999999999999999999998 7877777766555
Q ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 376 SSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 376 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
|+..|++.+++.++..++.....++
T Consensus 168 ---------~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (406)
T PRK11551 168 ---------WRHIFYVGGVGPLLLVPLLMRWLPE 192 (406)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999998777666655544443343
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=130.76 Aligned_cols=181 Identities=17% Similarity=0.111 Sum_probs=151.0
Q ss_pred HHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHH
Q 014047 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWI 287 (431)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~ 287 (431)
+..|.+.|..+++.+...+..--.+....|.+.++.|+|.++. +.+.+.+...++..+.|.++||.++|+.+
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm------ 97 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM------ 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee------
Confidence 3445555666666666666666667778899999988998876 89999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH--H
Q 014047 288 TCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA--G 364 (431)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~--g 364 (431)
.+++++.++..+++.+.+. ..+.+..++.|..-|.-+++....+...|+++.||+.+++-+++.++|+.+ .|.+. +
T Consensus 98 ~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal-~~~~~~la 176 (448)
T COG2271 98 AFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL-APLVALLA 176 (448)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch-HHHHHHHH
Confidence 8888888888888877654 455666688899999999999999999999999999999999999999999 67688 8
Q ss_pred HHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014047 365 KLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRI 410 (431)
Q Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 410 (431)
++.++.+ ||..|++-++++++..++.++..+.+
T Consensus 177 ~~~~~~~-------------w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 177 FFAFHGG-------------WRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHhccc-------------hhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8877765 99999999998888777766665544
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-11 Score=121.38 Aligned_cols=182 Identities=19% Similarity=0.241 Sum_probs=144.0
Q ss_pred CHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcc--cCc
Q 014047 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRS--KAI 281 (431)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr--~~~ 281 (431)
+++++.|.|+....+++.++..-+...+......|.+ .+|++..+. +..+..+.+++|.+++|++.||+|.| +.+
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l 352 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTL 352 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 3456667788888888888777666677777777777 569998876 77777899999999999999999998 443
Q ss_pred chHHHHHHHHHHHHHHHHHHH--------hhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 014047 282 PRTVWITCTHIMMILTFLLYA--------SALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPI 353 (431)
Q Consensus 282 ~r~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l 353 (431)
.........+..+.+. ..+.+.+++..++.|+..|..++..-++.+++.|+++.+.-+|+..+....
T Consensus 353 -----~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ 427 (477)
T PF11700_consen 353 -----LISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA 427 (477)
T ss_pred -----HHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 1111111122222222 334567788888999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 354 GALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 354 g~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
.+.+ ||++.|.+.+.+++ .|+.+....++.++++++.+.+
T Consensus 428 ss~l-GPll~g~i~~~tg~------------~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 428 SSWL-GPLLFGLITDATGS------------QRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHH-HHHHHHHHHHHhCC------------chhHHHHHHHHHHHHHHHHhhc
Confidence 9999 99999999999986 8999999999888888776543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.7e-12 Score=125.97 Aligned_cols=170 Identities=17% Similarity=0.151 Sum_probs=121.9
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHH-HH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRT 284 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~ 284 (431)
++++|+|.++...+..++..+.......+++.++ ++ .|+++... ...++.++..+|++++|++.||+|+|+.+
T Consensus 252 ~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l--- 328 (438)
T PRK10133 252 SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL--- 328 (438)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH---
Confidence 6788999998877777766666666666777774 54 48888765 88889999999999999999999998766
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHH
Q 014047 285 VWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAG 364 (431)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g 364 (431)
..+.++..+++++.........+...++.|++.+..++...+...+.+|. +.+++.++..+ ..+|+.+ +|.+.|
T Consensus 329 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~-~~~i~G 402 (438)
T PRK10133 329 ---AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGI-VTPVMG 402 (438)
T ss_pred ---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchH-HHHHHH
Confidence 33333333333333222222334566788999999999999999998864 56778888764 4467777 677999
Q ss_pred HHHhhhhcccCCcccccccccHHHHHHHHHHHHHH
Q 014047 365 KLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLG 399 (431)
Q Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~ 399 (431)
.+.|..+. .+..|++..++.+..
T Consensus 403 ~l~~~~g~------------~~~~~~v~~~~~~~~ 425 (438)
T PRK10133 403 FVSDAAGN------------IPTAELIPALCFAVI 425 (438)
T ss_pred HHHHhccc------------hHHHHHHHHHHHHHH
Confidence 99887652 567777655544443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-13 Score=132.49 Aligned_cols=161 Identities=15% Similarity=0.109 Sum_probs=123.0
Q ss_pred hhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh-h
Q 014047 228 VGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS-A 304 (431)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~-~ 304 (431)
......+...+|.+.+++|.+..+. ..+.+.++..++++..|+++||+|||+.+ ...+.....+...... .
T Consensus 4 ~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~ 77 (368)
T TIGR00903 4 QAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFL------FGSLATFAAAAGRLLDPF 77 (368)
T ss_pred hHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH------HHHHHHHHHHHHHHHHhc
Confidence 4455667788999999999998775 88888999999999999999999988654 2223222222222222 2
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccc
Q 014047 305 LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAEC 384 (431)
Q Consensus 305 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~ 384 (431)
+...+++.+++.|++.+.. ......++|.+|+++|+++.++...+..+|..+ ++.+.+.+.+..+
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l-~~~~~~~l~~~~g------------- 142 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIF-ALAAGLKIYTAGG------------- 142 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc-------------
Confidence 3457788899999999864 445556689999999999999999999999999 7888888887666
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 385 FRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 385 ~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
||+.|++.+++.++..++.++..++
T Consensus 143 Wr~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 143 LQLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999888877766665554443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-13 Score=132.29 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=128.0
Q ss_pred hhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh
Q 014047 228 VGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL 305 (431)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~ 305 (431)
......+...+|.+.+++|.+.... .++.+.++.+++.+++|+++||+|||+.+ ..+.++..++.+.....+
T Consensus 29 ~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l------~~~~~~~~~~~~~~~~a~ 102 (413)
T PRK15403 29 YLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVL------ITGALIFTLACAATLFTT 102 (413)
T ss_pred HHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHH------HHHHHHHHHHHHHHHHcC
Confidence 3344456667888888888887655 88889999999999999999999999877 555555556655555444
Q ss_pred -hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccc
Q 014047 306 -SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAEC 384 (431)
Q Consensus 306 -~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~ 384 (431)
...+++.+++.|++.+...+...+++.|.+++++++++.++.+.+..+|..+ +|.+++.+.+..+
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~lg~~l~~~~g------------- 168 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPII-GPLSGAALMHFVH------------- 168 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC-------------
Confidence 3567888899999888766667788999999999999999999999999999 8988888887665
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 385 FRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 385 ~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
||+.|++.+++.+++.+..++..++
T Consensus 169 w~~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 169 WKVLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999888877776654443333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.7e-14 Score=135.79 Aligned_cols=160 Identities=15% Similarity=0.161 Sum_probs=129.7
Q ss_pred hhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-
Q 014047 229 GAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL- 305 (431)
Q Consensus 229 ~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~- 305 (431)
.....+....|.+.+++|.+.... ..+...++..++.+++|+++||+|||+.+ ..+.++..++..+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~~~ 81 (399)
T TIGR00893 8 LDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTL------AVFIVIWGVFTGLQAFAGA 81 (399)
T ss_pred HHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceee------HHHHHHHHHHHHHHHHHcC
Confidence 334456667788888889887765 88889999999999999999999999888 555555555555554433
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccccccccc
Q 014047 306 SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECF 385 (431)
Q Consensus 306 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~ 385 (431)
...+++.+++.|++.+...+....++.|.+|+++|+++.++......+|..+ +|.+.+.+.+..+ |
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~-------------~ 147 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII-GGPLVGWILIHFS-------------W 147 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHhCC-------------c
Confidence 4567788899999999999999999999999999999999999999999999 7889998888776 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 014047 386 RLTFLVLAGVCGLGTILSIILTI 408 (431)
Q Consensus 386 ~~~f~~~~~~~~i~~i~~~~~~~ 408 (431)
++.|++.+++.++..++.++..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~ 170 (399)
T TIGR00893 148 QWAFIIEGVLGIIWGVLWLKFIP 170 (399)
T ss_pred hHHHHHHHHHHHHHHHHhhheec
Confidence 99999888877776665554433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-13 Score=131.89 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHH
Q 014047 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~ 293 (431)
.+...++..+......+...+.+|.+.+++|.+..+. ..+...++..++.++.|+++||+|||+.+ .++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l------~~~~~~ 92 (426)
T PRK12307 19 ALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLM------MWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHH
Confidence 3445555555555555566677788888889987665 78888999999999999999999999877 666666
Q ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhc
Q 014047 294 MILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEAT 372 (431)
Q Consensus 294 ~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~ 372 (431)
.+++.......+ ...+++.+++.|++.|..++....++.|.+|+++|+++.++...+..+|..+ ++.+.+.+.+..+
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~-~~~l~~~l~~~~~- 170 (426)
T PRK12307 93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII-AAYFMPSFAEAYG- 170 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH-HHHHHHHHcccCC-
Confidence 666665555444 3567888899999999999999999999999999999999999999999998 7778888877665
Q ss_pred ccCCcccccccccHHHHHHHHH
Q 014047 373 KQGSSTCIGAECFRLTFLVLAG 394 (431)
Q Consensus 373 ~~~~~~~~~~~~~~~~f~~~~~ 394 (431)
||+.|++...
T Consensus 171 ------------w~~~f~i~~~ 180 (426)
T PRK12307 171 ------------WRAAFFVGLL 180 (426)
T ss_pred ------------HHHHHHHHHH
Confidence 9999987543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=138.01 Aligned_cols=169 Identities=15% Similarity=0.189 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhHHHHHHH---hCCCcchh--HHHHHHHHHhhhhhhhhHHhHh-hhcccCcchHHHHHH
Q 014047 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVA---LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEH-YVRSKAIPRTVWITC 289 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr-~grr~~~~r~~~~~~ 289 (431)
.+|.+++..++.....++...++|.|+++ +|++..++ ..+.+.++..++++++|+++|| +|||+.+ .+
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l------~~ 84 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM------VL 84 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH------HH
Confidence 45677777777777778888999999875 68887665 8888899999999999999999 8999877 66
Q ss_pred HHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCc---hhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 290 THIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKH---FGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 290 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
+.++.+++.+++...+ ...+++..++.|+|.|...+...+++++.+++++ |++++++.+.+.++|..+ +|.+.|+
T Consensus 85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i-g~~l~g~ 163 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI-SPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHH-HHHHHHH
Confidence 6666777766666543 3456667788899999988999999999998764 888999999999999999 8999999
Q ss_pred HHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHH
Q 014047 366 LYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSI 404 (431)
Q Consensus 366 i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 404 (431)
+.++.+ |++.|++.++..+++.+..+
T Consensus 164 l~~~~g-------------~~~~f~~~~~~~~~~~l~~~ 189 (475)
T TIGR00924 164 IAENYG-------------YHVGFNLAAVGMVIGLLTFF 189 (475)
T ss_pred HHHhcC-------------hHHHHHHHHHHHHHHHHHHH
Confidence 998776 99999998876666544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-13 Score=133.08 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=63.1
Q ss_pred CHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhh
Q 014047 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYV 276 (431)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~g 276 (431)
.+++.+++|..|...+..++.....+++.+|+|.++++ .|++..++ +.+++.++.+++.+++|+++||+.
T Consensus 265 ~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~ 337 (495)
T KOG2533|consen 265 GFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK 337 (495)
T ss_pred HHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999998 46887666 888889999999999999999953
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=137.98 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=137.1
Q ss_pred HHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHH
Q 014047 219 LLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMIL 296 (431)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~ 296 (431)
.+.+..++...........+|.+.+++|.+.... ..+.+.++..++.++.|+++||+|||+.+ .++.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~ 79 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLF------LISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHH------HHHHHHHHH
Confidence 3444445555555567778899999999886654 88889999999999999999999999876 666666666
Q ss_pred HHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccC
Q 014047 297 TFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQG 375 (431)
Q Consensus 297 ~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~ 375 (431)
+.+.....+ ...+++.+++.|++.+...+...+++.|.+|+++|+++.++......+|..+ +|.++|++.++.+
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~---- 154 (485)
T TIGR00711 80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPAL-GPTLGGWIIENYH---- 154 (485)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhh-hhccHhHhccCcC----
Confidence 666655444 3567788899999999999999999999999999999999999999999999 8989999988766
Q ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 014047 376 SSTCIGAECFRLTFLVLAGVCGLGTILSIILTI 408 (431)
Q Consensus 376 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 408 (431)
|++.|++.+.+.+++.++.++..+
T Consensus 155 ---------w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 155 ---------WRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred ---------ceehhhhhhHHHHHHHHHHHHHcC
Confidence 999999988777776666555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5e-13 Score=131.76 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=128.5
Q ss_pred hHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHH
Q 014047 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTH 291 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~ 291 (431)
++.|+.+++..++.......+....+.+.++++.++... ..+.+.+...+..+++|+++||+|||+++ ..+.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl------~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVM------FIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhh------HHHH
Confidence 456788888888777665566666777778888776554 78888899999999999999999999988 5554
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhh
Q 014047 292 IMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~ 371 (431)
++..++.+.+..... .++.+++.|++.+...+...++++|.+|+++|+++.|+......+|..+ ||.++|.+.+..
T Consensus 76 ~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~-Gp~lgG~l~~~~- 151 (393)
T PRK11195 76 GIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILL-GTVLGGALADPH- 151 (393)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-
Confidence 444444433333222 2566788999999999999999999999999999999999999999999 899999998853
Q ss_pred cccCCcccccccccHHHHHHHHHHHHHHHHH
Q 014047 372 TKQGSSTCIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 372 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
|+..+.+.+.+.+++.+.
T Consensus 152 -------------~~~~~~i~~~~~~~~~~~ 169 (393)
T PRK11195 152 -------------AEAALAVCALIYLLAALF 169 (393)
T ss_pred -------------HHHHHHHHHHHHHHHHHH
Confidence 777777666555555443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-13 Score=134.53 Aligned_cols=176 Identities=13% Similarity=0.046 Sum_probs=126.7
Q ss_pred hhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHH
Q 014047 213 VKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCT 290 (431)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~ 290 (431)
+++.++...+...+.+.....+....|.+. +.|.++.+. ..+.+.++..++.++.|+++||+|||+.+ ..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~------~~~ 97 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL------PAG 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh------HHH
Confidence 344444444444444444444555666555 468887765 88889999999999999999999999877 445
Q ss_pred HHHHHHHHHHHHhh----h-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 291 HIMMILTFLLYASA----L-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 291 ~~~~~~~~~~~~~~----~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
.++.+++.+.+... + ...+++..++.|++.|..++.....+.|.+|+++||++.|+.+.+..+|+.+ ++.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~l~~~ 176 (438)
T TIGR00712 98 LILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI-PPLLVLL 176 (438)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH-HHHHHHH
Confidence 55555554443321 1 2345566788899988888888889999999999999999999999999998 5656665
Q ss_pred HHhh-hhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 366 LYDA-EATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 366 i~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
..+. .+ ||.+|++.++++++..++.+++.++
T Consensus 177 ~~~~~~~-------------w~~~f~~~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 177 GMAWFND-------------WHAALYFPAICAIIVALFAFAMMRD 208 (438)
T ss_pred HHHHhhh-------------hHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5443 33 9999999888887776665555444
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-13 Score=131.62 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=132.2
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHI 292 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~ 292 (431)
+.+|...+..++...........+|.+.+++|++..+. ..+...++..++.+++|+++||+|||+.+ ..+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~------~~~~~ 80 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL------IFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHH
Confidence 45566666666666666677778899999999987765 77888999999999999999999999876 55555
Q ss_pred HHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhh
Q 014047 293 MMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 293 ~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~ 371 (431)
+..++.++....+ ...+++.+++.|++.|...+....++.|.+|+++|+.+.+..+....+|+.+ +|.+.+.+.+...
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~ 159 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI-FPIIAAYLLARSI 159 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc
Confidence 5555555555443 3456777889999999888888899999999889999999988888888888 7878888765432
Q ss_pred cccCCcccccccccHHHHHHHHHHHHHHHHHH
Q 014047 372 TKQGSSTCIGAECFRLTFLVLAGVCGLGTILS 403 (431)
Q Consensus 372 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 403 (431)
. ||+.|.+.+++.++..++.
T Consensus 160 g------------w~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 160 E------------WYWVYACIGLVYVAIFILT 179 (394)
T ss_pred c------------HHHHHHHHHHHHHHHHHHH
Confidence 2 9999998877766654443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=129.33 Aligned_cols=175 Identities=21% Similarity=0.179 Sum_probs=133.9
Q ss_pred hHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcch-------hHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTT-------ELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~-------~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
++.+..+++..++.......+...+|.+.+++|.+..+ ...++..+...++.+++|+++||+|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----- 87 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML----- 87 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH-----
Confidence 34566677777777767677788899999998887542 267778889999999999999999999776
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 287 ITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
..+.++..++.+++...+ .+.+++..++.|++.+ ..+....++.+.+++++|+++.++.+....+|..+ +|.+.+.
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 164 (408)
T PRK09874 88 -LRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALL-GPLAGGL 164 (408)
T ss_pred -HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 445555555555444433 3456677788888754 45667778889999999999999999999999988 8889999
Q ss_pred HHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 366 LYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 366 i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
+.+..+ |+++|++.+++.+++.+..++..++
T Consensus 165 l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (408)
T PRK09874 165 LADSYG-------------LRPVFFITASVLFLCFLVTLFCIRE 195 (408)
T ss_pred HHHHhC-------------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 988776 9999999888877776665554443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=133.42 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=134.0
Q ss_pred HHHhhhH-hHHHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHh-hhcccCcch
Q 014047 209 GEAFVKA-DFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEH-YVRSKAIPR 283 (431)
Q Consensus 209 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr-~grr~~~~r 283 (431)
.+.+|+| .+|..++..++.....+.+..+++.|++ ++|++...+ ..+.+........+++|+++|| +|||+.+
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~-- 91 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI-- 91 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH--
Confidence 4566776 4888888888888888888889998885 569987764 4444444445556789999999 5999776
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCc--hhhHHHHHHHHHHhHHHHHh
Q 014047 284 TVWITCTHIMMILTFLLYASAL--SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKH--FGLIYNFILLGNPIGALLFS 359 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~i~~ 359 (431)
..+.++..++..++.... ...+++..++.|+|.|...+...+++.|.||+++ ++.+.++.+++.++|+.+ +
T Consensus 92 ----~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~-g 166 (500)
T PRK09584 92 ----MLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF-S 166 (500)
T ss_pred ----HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH-H
Confidence 666666666666555432 2345566788899999888888899999998654 456788889999999999 8
Q ss_pred hhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 360 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
|.+.|++.+..+ |++.|++.++..+++.+..++
T Consensus 167 p~i~g~l~~~~g-------------~~~~F~i~~i~~~i~~i~~~~ 199 (500)
T PRK09584 167 MLATPWLAAKYG-------------WSVAFALSVVGMLITVVNFAF 199 (500)
T ss_pred HHHHHHHHHhhC-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877 999999887766665544333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=134.86 Aligned_cols=166 Identities=15% Similarity=0.133 Sum_probs=129.1
Q ss_pred HHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 014047 224 YFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLY 301 (431)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~ 301 (431)
+++.+.....+....|.+.+++|.+..+. +.+...++..++.++.|+++||+|||+.+ .++.++..++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~ 77 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL------PIGLILCAIVNLFF 77 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh------HHHHHHHHHHHHHH
Confidence 34444555566777888888889987765 88889999999999999999999999887 56666666665555
Q ss_pred Hhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhh-hHHHHHHhhhhcccCCccc
Q 014047 302 ASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG-LLAGKLYDAEATKQGSSTC 379 (431)
Q Consensus 302 ~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p-~i~g~i~~~~~~~~~~~~~ 379 (431)
...+ ...+++.+++.|++.+...+...+++.|.+|+++|+++.++.+.+..+|..+ +| .+.+.+.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-------- 148 (379)
T TIGR00881 78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGL-LPPLVLFGIAELYS-------- 148 (379)
T ss_pred HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHH-HHHHHHHHHHhcCC--------
Confidence 5443 3566777889999999999999999999999999999999999999999999 66 45555555544
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 380 IGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 380 ~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
|++.|++.+++.++..++.++..++
T Consensus 149 -----~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T TIGR00881 149 -----WHWVFIVPGIIAIIVSLICFLLLRD 173 (379)
T ss_pred -----chhHHHHHHHHHHHHHHHHheeeCC
Confidence 9999998887776665555544433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=131.20 Aligned_cols=169 Identities=12% Similarity=0.147 Sum_probs=130.1
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhh-hcccCcchHHHHHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHY-VRSKAIPRTVWITCT 290 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~-grr~~~~r~~~~~~~ 290 (431)
+.+|.+....++.....+++..++|.|+++ +|++...+ +.+.+.....++.+++|+++||+ |||+.+ .++
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i------liG 82 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV------MLG 82 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH------HHH
Confidence 456666666666677777888899999875 59987765 77788888899999999999999 999876 666
Q ss_pred HHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCC--chhhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 291 HIMMILTFLLYASAL--SGTLYAATVLLGVCYGVIYSLMVPTASELFGLK--HFGLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 291 ~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
.++..++.+++.... ...+++...+.++|.|...+..+++++|.||++ .|.++.++.+...++|+.+ +|.+.|++
T Consensus 83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~i-ap~l~g~L 161 (493)
T PRK15462 83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSII-APIACGYA 161 (493)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHH-HHHHHHHH
Confidence 666666665554322 123444455566777777777889999999876 5899999999999999999 89999999
Q ss_pred HhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHH
Q 014047 367 YDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILS 403 (431)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 403 (431)
.+..+ |++.|.+.++..+++++..
T Consensus 162 ~~~~G-------------w~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 162 QEEYS-------------WAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred HhhhC-------------hHHHHHHHHHHHHHHHHHH
Confidence 88776 9999998776555554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-13 Score=129.83 Aligned_cols=161 Identities=22% Similarity=0.262 Sum_probs=125.1
Q ss_pred HhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh
Q 014047 226 LGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS 303 (431)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~ 303 (431)
+..+..+.+....|.+.+++|.+..+. ..+.+.++..++++++|+++||+|||+.+ ..+.++.+++.+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~------~~~~~~~~~~~~~~~~ 87 (377)
T TIGR00890 14 FTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA------MLGGILYGLGFTFYAI 87 (377)
T ss_pred HHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh------HHhHHHHHHHHHHHHH
Confidence 333445556677888888999987765 88999999999999999999999999887 5666666666666555
Q ss_pred hhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccc
Q 014047 304 ALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGA 382 (431)
Q Consensus 304 ~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~ 382 (431)
.++ ..+++.+++.|++.+..++.....+.+.++ ++|+++.++...+..+|..+.+| +.+.+.+..+
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~----------- 154 (377)
T TIGR00890 88 ADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSP-LITSVINLEG----------- 154 (377)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHH-HHHHHHhccc-----------
Confidence 443 456677788999998887777777888886 67999999999999999887444 6666666555
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 383 ECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 383 ~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
||+.|++.++++++..+..+++.
T Consensus 155 --~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 155 --VPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhe
Confidence 99999998888777766655443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7e-13 Score=131.77 Aligned_cols=177 Identities=15% Similarity=0.103 Sum_probs=136.0
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
+.+.|++.++.+++..++...........+|.+.++.+.+.... ..+...++..++.++.|+++||+|||+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l----- 85 (417)
T PRK10489 11 SLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI----- 85 (417)
T ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE-----
Confidence 33446888888888877777776777788899988887776554 88888999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHH-----hhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhh
Q 014047 287 ITCTHIMMILTFLLYA-----SAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG 360 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p 360 (431)
..+..+.+++.+.+. ..+ ...+++..++.|++.+...+...+.+++.+++++++++.++.+....+|..+ +|
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~ 163 (417)
T PRK10489 86 -LLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVI-SP 163 (417)
T ss_pred -EehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHh-HH
Confidence 333333333322221 122 2355666788898888877888889999999999999999999999999999 89
Q ss_pred hHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 361 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 361 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
.++|.+.+..+ |++.|++.++..+++.++.+.
T Consensus 164 ~l~g~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T PRK10489 164 ALGGLLIAAGG-------------VAWNYGLAAAGTFITLLPLLR 195 (417)
T ss_pred HHHHHHHHHHh-------------hHHHHHHHHHHHHHHHHHHHh
Confidence 89999988776 999998877776666554433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=128.64 Aligned_cols=170 Identities=20% Similarity=0.196 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHH
Q 014047 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMM 294 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~ 294 (431)
.+......++.......+...+|.+.+++|.+..+. ..+...++..++.+++|+++||+|||+.+ ..+..+.
T Consensus 10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~------~~~~~~~ 83 (394)
T PRK11652 10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI------LVGMSIF 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHHHHH
Confidence 344444444555555667777899999999988765 78889999999999999999999999876 4455555
Q ss_pred HHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcc
Q 014047 295 ILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATK 373 (431)
Q Consensus 295 ~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~ 373 (431)
.++.+.....+ ...+++.+++.|++.+...+....+..|.++.++++.+.++.+.+..++..+ +|.+.+.+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g-- 160 (394)
T PRK11652 84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLL-APLIGGLLTTLFG-- 160 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC--
Confidence 55544444433 3456777889999888877777788889998889999999999999999988 8989998887766
Q ss_pred cCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 374 QGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 374 ~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
|++.|++.+++.++..++..+.
T Consensus 161 -----------~~~~f~~~~~~~~~~~~~~~~~ 182 (394)
T PRK11652 161 -----------WRACYLFLLLLGAGVTFSMARW 182 (394)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998877666554444333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=131.55 Aligned_cols=156 Identities=12% Similarity=0.040 Sum_probs=113.9
Q ss_pred HHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh-----hh
Q 014047 234 VLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA-----LS 306 (431)
Q Consensus 234 ~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~ 306 (431)
+...+|.+.++ |.+..+. ..+...++.+++.+++|+++||+|||+.+ .++.++.+++.+.+... +.
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l------~~~~~~~~i~~~~~~~~~~~~~~~ 120 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLILAAAVMLFMGFVPWATSSI 120 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhH------HHHHHHHHHHHHHHHhhhcccccH
Confidence 34566766666 8887765 88889999999999999999999999876 55555555555544432 12
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccH
Q 014047 307 GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFR 386 (431)
Q Consensus 307 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~ 386 (431)
..+++.+++.|++.|..++.....+.+.+++++|+++.|+.+.+..+|..+.+|++...+....+ ||
T Consensus 121 ~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g-------------w~ 187 (452)
T PRK11273 121 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND-------------WH 187 (452)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc-------------HH
Confidence 34566678889988888777778889999999999999999999999876546644333322223 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 014047 387 LTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 387 ~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
+.|++.++++++..++.+++.++
T Consensus 188 ~~f~i~~~~~~~~~~l~~~~~~~ 210 (452)
T PRK11273 188 AALYMPAFAAILVALFAFAMMRD 210 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC
Confidence 99999887777765555554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=128.13 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=129.2
Q ss_pred HHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 014047 225 FLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYA 302 (431)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~ 302 (431)
+........+...+|.+.+++|.+.... ..+.+.++..++.++.|+++||+|||+.+ ..+.++..++...+.
T Consensus 13 ~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l------~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 13 LLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVA------IPGAALFIIASLLCS 86 (392)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHH------HHHHHHHHHHHHHHH
Confidence 3334444556678899999999887665 77888899999999999999999999776 555555555555554
Q ss_pred hhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccccc
Q 014047 303 SALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIG 381 (431)
Q Consensus 303 ~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~ 381 (431)
..++ ..+++..++.|++.+...+...+++.|.+++++|+++.++.+....++..+ +|.+++.+.+..+
T Consensus 87 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~-~~~i~~~l~~~~g---------- 155 (392)
T PRK10473 87 LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVL-APVLGHLIMLKFP---------- 155 (392)
T ss_pred HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcC----------
Confidence 4433 456677788999999888888999999999999999999999998999888 7888888777665
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 382 AECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 382 ~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
|++.|++.++++++..++.++..++
T Consensus 156 ---~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (392)
T PRK10473 156 ---WQSLFYTMAAMGILVLLLSLFILKE 180 (392)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999888777776665544433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=128.25 Aligned_cols=167 Identities=18% Similarity=0.165 Sum_probs=131.5
Q ss_pred HHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHH
Q 014047 218 WLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMM 294 (431)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~ 294 (431)
+.+.+..++.....+...+.++.+++ ++|.+.... ..+...+...+.++++|+++||+|||+.+ ..+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l------~~~~~~~ 86 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMI------VTGMLMR 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHH------HHHHHHH
Confidence 55556666666676777777777664 569887765 77777888888899999999999999776 6666666
Q ss_pred HHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcc
Q 014047 295 ILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATK 373 (431)
Q Consensus 295 ~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~ 373 (431)
.++++.+...+ .+.+++..++.|++.+...+...+++.+.+|+++++++.|+......+|..+ +|.++|.+. ..+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~g~l~-~~g-- 162 (400)
T PRK11646 87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVI-GALLGSWLL-QYD-- 162 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-Hhh--
Confidence 66666555443 3456777788899888888888899999999999999999999999999999 898999988 445
Q ss_pred cCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 374 QGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 374 ~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
|++.|++.+++++++.++..+
T Consensus 163 -----------~~~~f~~~~~~~~~~~i~~~~ 183 (400)
T PRK11646 163 -----------FRLVCATGAVLFVLAAAFNAW 183 (400)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999888777666555443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-13 Score=128.95 Aligned_cols=140 Identities=15% Similarity=0.151 Sum_probs=98.3
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchH
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRT 284 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~ 284 (431)
.++.++++++|...+..++.....+.+..+.|.+.++. |+++... ..++..+...++++++|+++||+|+|+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~--- 294 (366)
T TIGR00886 218 QLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL--- 294 (366)
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH---
Confidence 36788899999888888777777777788899998764 8887655 67778888999999999999999998665
Q ss_pred HHHHHHHHHHHHHHHH--HHhh---hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhH
Q 014047 285 VWITCTHIMMILTFLL--YASA---LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIG 354 (431)
Q Consensus 285 ~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg 354 (431)
.....+...+..+ +... +....+....+.+++.|...+...+++++.+| +++|+++|+.+...++|
T Consensus 295 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 295 ---LMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred ---HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 2222222222222 2222 12223333444555666666667778888886 78999999998887765
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-12 Score=128.16 Aligned_cols=174 Identities=15% Similarity=0.047 Sum_probs=130.2
Q ss_pred HhHHHHHHHHHHhhh----hHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHH
Q 014047 215 ADFWLLWFVYFLGVG----AGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWIT 288 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~ 288 (431)
+++|.+.+...+... ....+...+|.+.+++|.+.... ..+.+.++..++.++.|+++||+|||+.+ .
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~ 82 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM------L 82 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------H
Confidence 444444444443332 34456667788888999887664 78888999999999999999999999876 5
Q ss_pred HHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHH
Q 014047 289 CTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLY 367 (431)
Q Consensus 289 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~ 367 (431)
.+..+..++.+.....+ ...+++.+++.|++.+...+...+.+.|.++++++++..++......++..+ +|.+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~ 161 (406)
T PRK15402 83 AGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLL-GPLVGAALI 161 (406)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 55555555555444433 3456777888999988888888899999999999999999888888888888 888888888
Q ss_pred hhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 014047 368 DAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTI 408 (431)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 408 (431)
+..+ |+++|++.+++++++.+..+...+
T Consensus 162 ~~~~-------------w~~~~~~~~~~~~~~~~~~~~~~~ 189 (406)
T PRK15402 162 HVLP-------------WRGMFVLFAALAALSFFGLWRAMP 189 (406)
T ss_pred HccC-------------ccHHHHHHHHHHHHHHHHHHHhCC
Confidence 8665 999999888887777665444333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=127.31 Aligned_cols=179 Identities=17% Similarity=0.237 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhHHH-HHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHH
Q 014047 216 DFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHI 292 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~ 292 (431)
.+|..++.+++.....+.+...+|+ +.+++|.+.... ..+...++..++.+++|+++||+|||+.+ .++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~ 75 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT------TLSLL 75 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHH
Confidence 4677788888878888888889996 667789998765 88888999999999999999999999876 56666
Q ss_pred HHHHHHHHHHhhh-h-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 293 MMILTFLLYASAL-S-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 293 ~~~~~~~~~~~~~-~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
+..++.+++...+ + ..+++.+++.|++.+ .+.....++.|.+++++|+++.++......+|..+ ++.+.+.+....
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~l~~~~ 153 (366)
T TIGR00886 76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGV-AQFVMPPIIGSL 153 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHH-HHHHHHHHHHHH
Confidence 6666666655444 3 456677788898855 44567788999999999999999988777777777 565666555432
Q ss_pred hcccCCcccccccccHHHHHH-HHHHHHHHHHHHHH
Q 014047 371 ATKQGSSTCIGAECFRLTFLV-LAGVCGLGTILSII 405 (431)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~f~~-~~~~~~i~~i~~~~ 405 (431)
.... ......+|++.|++ .+++..+..++.+.
T Consensus 154 ~~~~---~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 186 (366)
T TIGR00886 154 IFGA---GLPAHLAWGWAFVIVPAGILLLPALLIFF 186 (366)
T ss_pred Hhcc---cccccccccchhHHHHHHHHHHHHHHHHH
Confidence 1100 00011249999943 34444444333333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.2e-13 Score=133.54 Aligned_cols=178 Identities=21% Similarity=0.195 Sum_probs=127.9
Q ss_pred hhhHhHHHHHHHHHHhhhhHH----HHHhhHHHHHHHhCCCcchh-HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 212 FVKADFWLLWFVYFLGVGAGV----TVLNNLAQIGVALGVNDTTE-LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~s~~~~-~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
+++++++..+....+.....+ .....++++.+++|-++... +.+...++..++.++.|+|||.+|||..+
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~----- 111 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFF----- 111 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHH-----
Confidence 356666666554444333222 22345678888997766554 77888999999999999999999999666
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 287 ITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
.++.++..++.+..+..++ ..++.+..+.|+|.|.... ....++|+.|.|.|+...++......+...+ +|.+...
T Consensus 112 -i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~-~~~ia~~ 188 (599)
T PF06609_consen 112 -IIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWI-SPLIAQL 188 (599)
T ss_pred -HHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcc-cHHHHHH
Confidence 8888999999988877654 4677788999999877754 4566899999999988777666544444434 5655544
Q ss_pred HHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014047 366 LYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRI 410 (431)
Q Consensus 366 i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 410 (431)
+..+.+ |||.|++..++..+++++.+++.++.
T Consensus 189 ~~~~~~-------------WRw~~~~~~i~~~i~~vl~~~fY~PP 220 (599)
T PF06609_consen 189 FAAHSG-------------WRWIFYIFIIWSGIALVLIFFFYFPP 220 (599)
T ss_pred hccCCC-------------cchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 443322 99999999998888877665554443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-11 Score=120.92 Aligned_cols=236 Identities=11% Similarity=-0.035 Sum_probs=147.7
Q ss_pred CCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHHH
Q 014047 3 NFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQ 81 (431)
Q Consensus 3 ~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (431)
.|| ++|++++++..+...++..++|.+++.+.+..+||+.|++...+.+++++..++ ..|++.++ ++.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~--~lp~~~~~-~~~~~------ 202 (413)
T PRK15403 132 AFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL--AMPETVKR-GAVPF------ 202 (413)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH--hCCCCccc-cCCCC------
Confidence 567 578999999999999999999999999988889999999998887777765442 12221100 00000
Q ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCCC
Q 014047 82 AASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPL 161 (431)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 161 (431)
T Consensus 203 -------------------------------------------------------------------------------- 202 (413)
T PRK15403 203 -------------------------------------------------------------------------------- 202 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHH
Q 014047 162 LTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241 (431)
Q Consensus 162 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (431)
+. .+ ....+++.+|++.+|...+..++.....+.+....|.+
T Consensus 203 ----------------~~-~~---------------------~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~ 244 (413)
T PRK15403 203 ----------------SA-KS---------------------VLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVI 244 (413)
T ss_pred ----------------Ch-HH---------------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 00 00 00013678899999998888777777767777788988
Q ss_pred HHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchH-HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHH
Q 014047 242 GVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRT-VWITCTHIMMILTFLLYASALSG-TLYAATVLL 316 (431)
Q Consensus 242 ~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 316 (431)
+++. |++.... .......+..++..+.+.+.++..+++...+. .+..++.++..++.. ...+.. ..++..++.
T Consensus 245 l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~--~~~~~~~~~~~~~~l~ 322 (413)
T PRK15403 245 LIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNL--LWPHVWLWSVLGTSLY 322 (413)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH--HccccHHHHHHHHHHH
Confidence 8876 8887765 44455666677667776655433332222000 011112221111111 112222 235566777
Q ss_pred HHHhhhhhhhHHHHHHHhhc-CCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 317 GVCYGVIYSLMVPTASELFG-LKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 317 G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
++|.+...+......- .+ ...+|++.++.+.....+..+ ++...|++.+..
T Consensus 323 ~~G~~~~~p~~~~~al--~~~~~~~G~a~a~~~~~~~~~~~~-~~~~~g~~~~~~ 374 (413)
T PRK15403 323 AFGIGLIFPTLFRFTL--FSNNLPKGTVSASLNMVILMVMAV-SVEIGRWLWFNG 374 (413)
T ss_pred HHHHHHHhHHHHHHHh--ccCCCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHcC
Confidence 8888887766654332 22 234799999998888887777 677888887763
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-11 Score=123.40 Aligned_cols=178 Identities=18% Similarity=0.114 Sum_probs=130.5
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
+...++|......+..++.......+...+|.+.++ +|.++... +.+..++|..+|.++.+++.+|+++++.+
T Consensus 212 ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv---- 287 (524)
T PF05977_consen 212 RYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLV---- 287 (524)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhh----
Confidence 334445655544444444444444455668888875 47776654 88888999999999999998888877665
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHH
Q 014047 286 WITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAG 364 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g 364 (431)
..+.++.+++++.++..++ +...+..++.|++.........+.+++..|++.+|++.++..+....+..+ |..+.|
T Consensus 288 --~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~l-Gsll~G 364 (524)
T PF05977_consen 288 --LLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPL-GSLLWG 364 (524)
T ss_pred --HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5555556666666665443 455666788899888888888899999999999999999999888888888 788999
Q ss_pred HHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 365 KLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
.+.+..+ .+.++.+.+++.+++.++.+..
T Consensus 365 ~la~~~g-------------~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 365 FLADHFG-------------VRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHhC-------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987 6778877776666666555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-13 Score=129.82 Aligned_cols=160 Identities=21% Similarity=0.233 Sum_probs=129.3
Q ss_pred hHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-h
Q 014047 230 AGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-S 306 (431)
Q Consensus 230 ~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~ 306 (431)
...++...+|.+.+++|.+..+. ..+...++..++++++|+++||+|||+.+ ..+.++..++...+...+ .
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~i~~~~~~~~~~~ 79 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVI------LGGTLVFALAAVACALAQTI 79 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHH------HHHHHHHHHHHHHHHHHccH
Confidence 34456788999999999987765 78888999999999999999999998776 555555555555554443 3
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccH
Q 014047 307 GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFR 386 (431)
Q Consensus 307 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~ 386 (431)
..+++..++.|++.+...+...+++.|.+++++|+++.++.+....+|..+ +|.+.+.+.+..+ |+
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~-------------~~ 145 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLL-APIIGGWLLVWFS-------------WH 145 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-------------hH
Confidence 456777888999999888888999999999999999999999999999999 8889999988776 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 014047 387 LTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 387 ~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
+.|++.++++++..++..+..++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~ 168 (377)
T PRK11102 146 AIFWVLALAAILAAALVFFFIPE 168 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc
Confidence 99998888777766555444333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-12 Score=129.87 Aligned_cols=178 Identities=14% Similarity=0.111 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHH
Q 014047 218 WLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMI 295 (431)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~ 295 (431)
...++..++.....+.+...+|.+.+++|.+..+. ..+...++..++.++.|+++||+|||+.+ ..+.++.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~------~~~~~~~~ 112 (476)
T PLN00028 39 HLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGS------AFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------HHHHHHHH
Confidence 33344444444444556667788888899987765 66777888999999999999999999766 45555555
Q ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhccc
Q 014047 296 LTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQ 374 (431)
Q Consensus 296 ~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~ 374 (431)
++.++....+ ...+++.+++.|++.+... ....++.|.+|+++||.+.|+.+....+|..+ ++.+.+.+.+.....
T Consensus 113 ~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~-~~~~~~~i~~~~~~~- 189 (476)
T PLN00028 113 PAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGV-TQLLMPLVFPLIKDA- 189 (476)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc-
Confidence 5555544443 3455667788898887653 34567889999999999999998777777777 555555443321100
Q ss_pred CCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 375 GSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 375 ~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
.+....+||++|++.+++.++..++.+++.
T Consensus 190 ---~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 190 ---GAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred ---CCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 000112499999998888877666655543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-14 Score=134.55 Aligned_cols=177 Identities=12% Similarity=0.150 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHH
Q 014047 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMM 294 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~ 294 (431)
...+.+.....+.--+.+...++...+.++.++... +.+.+.+..++.+|+.|+|.||+.||+++ .++..+-
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~------~vG~~iW 108 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI------AVGIFIW 108 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE------eeHHHHH
Confidence 344444555555555555555666666668777654 88888999999999999999999999988 6776666
Q ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcc
Q 014047 295 ILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATK 373 (431)
Q Consensus 295 ~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~ 373 (431)
.++.+...+.+. +.+.+.+.+.|+|-+.+.++.+++++|.|+..+|++..++.+.+..+|+.+ |-++++.+.+..+.
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl-G~vvgs~va~~~~~- 186 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL-GYVVGSVVASLTFW- 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce-eEEeeeeeccCccc-
Confidence 666666555544 567788899999999999999999999999999999999999999999999 66577777777664
Q ss_pred cCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 014047 374 QGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRP 412 (431)
Q Consensus 374 ~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 412 (431)
||++|...+++.++..++.+++.++..|
T Consensus 187 -----------Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 187 -----------WRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred -----------eEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 9999999999999988888777666554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.1e-13 Score=133.78 Aligned_cols=157 Identities=12% Similarity=0.027 Sum_probs=117.6
Q ss_pred HHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHH-----hh-
Q 014047 233 TVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYA-----SA- 304 (431)
Q Consensus 233 ~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~-----~~- 304 (431)
.+....|.+.+++|.+..+. +.+.+.++..++.+++|+++||+|||+.+ .++.++.+++.+.+. ..
T Consensus 47 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~ 120 (467)
T PRK09556 47 NFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFL------PFLLILSAICMLGFGASLGSGSV 120 (467)
T ss_pred ChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchH------HHHHHHHHHHHHHHHHHHhcccc
Confidence 34456788889999987765 88889999999999999999999999887 333333333322222 12
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccc
Q 014047 305 LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAEC 384 (431)
Q Consensus 305 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~ 384 (431)
+...+++.+++.|++.+...+....++.+.+|+++||++.|+...+..+|..+ ++.+..++.+.... .+
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l-~~~i~~~~~~~~~~----------~~ 189 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAG-AGGVALWGANYFFD----------GH 189 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhH-HHHHHHHHHHhhcc----------Cc
Confidence 23467777899999999888888999999999999999999999999999999 66676666554310 12
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 014047 385 FRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 385 ~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
|+..|.+.+++.++..++.+++
T Consensus 190 ~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 190 VIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred chhHHHHHHHHHHHHHHHHHHh
Confidence 8888888777666655554444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=130.53 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHH
Q 014047 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~ 293 (431)
.+..+++..++...........+|.+.+++|.+..+. ..+...++..++.++.|+++||+|||+.+ .++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~ 94 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAM------VISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHH
Confidence 4455566666655566666677888888899987665 88888999999999999999999999776 555555
Q ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhc
Q 014047 294 MILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEAT 372 (431)
Q Consensus 294 ~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~ 372 (431)
.+++.+.....+ ...+++..++.|++.+..++....++.|.+++++|+.+.++...+..+|..+ +|.+.+.+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~- 172 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV-AAQVYSLVVPVWG- 172 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCC-
Confidence 555655555443 3466777899999999999999999999999999999999999999999999 8889998888766
Q ss_pred ccCCcccccccccHHHHHHHHHH
Q 014047 373 KQGSSTCIGAECFRLTFLVLAGV 395 (431)
Q Consensus 373 ~~~~~~~~~~~~~~~~f~~~~~~ 395 (431)
|++.|++..+.
T Consensus 173 ------------w~~~f~~~~~~ 183 (496)
T PRK03893 173 ------------WRALFFIGILP 183 (496)
T ss_pred ------------HHHHHHHHHHH
Confidence 99998865443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-12 Score=123.11 Aligned_cols=167 Identities=28% Similarity=0.357 Sum_probs=135.8
Q ss_pred HHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHH
Q 014047 219 LLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMIL 296 (431)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~ 296 (431)
.+.+..++............|.+.++.|.+.... ..+...++..++.++.|+++||+|||+.+ ..+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~------~~~~~~~~~ 76 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVL------LLGLLLFAL 76 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhh------HHHHHHHHH
Confidence 4445555556666677778888998888887665 88888999999999999999999999876 666666666
Q ss_pred HHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccC
Q 014047 297 TFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQG 375 (431)
Q Consensus 297 ~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~ 375 (431)
+.+.....+ ...+++..++.|++.+...+...+++.|.+|+++|++..++.+....+|..+ +|.+.+.+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---- 151 (352)
T cd06174 77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALL-GPLLGGLLAESLG---- 151 (352)
T ss_pred HHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhh----
Confidence 665554433 3566777889999999999999999999999999999999999999999999 8989999988876
Q ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 376 SSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 376 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
|++.|++.+++.+++.+...+
T Consensus 152 ---------~~~~~~~~~~~~~~~~~~~~~ 172 (352)
T cd06174 152 ---------WRWLFLILAILGLLLALLLLF 172 (352)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999888877776665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-12 Score=130.46 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=131.4
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHh-hhcccCcchHHHHHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEH-YVRSKAIPRTVWITCT 290 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr-~grr~~~~r~~~~~~~ 290 (431)
+.+|.+....++.....+.....++.|++ ++|.+...+ ..+.+.....+..+++|+++|| +|||+.+ .++
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~------~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI------VLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH------HHH
Confidence 45677777777777777778888888876 468887665 6677777777888899999999 9999888 777
Q ss_pred HHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCc--hhhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 291 HIMMILTFLLYASALS--GTLYAATVLLGVCYGVIYSLMVPTASELFGLKH--FGLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 291 ~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
.++..++.+.+..... ..+++.+++.|+|.|...+...+++.|.||+++ |+.++++.+++.++|+.+ +|.++|++
T Consensus 88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~-g~~l~g~l 166 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI-SLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH-HHHHHHHH
Confidence 7777777666554432 234567888899999999999999999998774 577899999999999999 89899999
Q ss_pred HhhhhcccCCcccccccccHHHHHHHHHHHHHHHH
Q 014047 367 YDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTI 401 (431)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i 401 (431)
.++.+ |++.|++.++..+++.+
T Consensus 167 ~~~~g-------------w~~~F~i~~i~~~~~~~ 188 (489)
T PRK10207 167 ADKFG-------------YSVTYNLCGAGLIIALL 188 (489)
T ss_pred HHhhC-------------hHHHHHHHHHHHHHHHH
Confidence 88876 99999987654444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=128.96 Aligned_cols=159 Identities=21% Similarity=0.180 Sum_probs=124.3
Q ss_pred hhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-
Q 014047 229 GAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL- 305 (431)
Q Consensus 229 ~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~- 305 (431)
..........|.+.+++|.+.... ..+...++..++.++.|+++||+|||+.+ ..+.++..++.++....+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~ 104 (398)
T TIGR00895 31 YDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVL------LWSILLFSVFTLLCALATN 104 (398)
T ss_pred HHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHccc
Confidence 334455667888888889887655 77788899999999999999999999776 455555555555444433
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccccccccc
Q 014047 306 SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECF 385 (431)
Q Consensus 306 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~ 385 (431)
...+++..++.|++.+...+...+++.|.+|+++|+++.++...+..+|..+ ++.+.+.+.+..+ |
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g-------------~ 170 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAV-GGFLAGWLIPVFG-------------W 170 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHH-HHHHHHHHhhccc-------------c
Confidence 3456777889999999999999999999999999999999999999999999 8889999888766 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014047 386 RLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 386 ~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
+..|++.++++++..++.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~ 192 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFL 192 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhC
Confidence 9999888666655555444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-12 Score=126.40 Aligned_cols=161 Identities=18% Similarity=0.135 Sum_probs=125.4
Q ss_pred HhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh
Q 014047 226 LGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS 303 (431)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~ 303 (431)
+.......+...+|.+.+++|.+..+. ..+.+.++..++.+++|+++||+|||+.+ ..+..+..++.+....
T Consensus 17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~ 90 (401)
T PRK11043 17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL------LAGLSLFALGSLGMLW 90 (401)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH------HHHHHHHHHHHHHHHH
Confidence 344444455566677778889887765 88889999999999999999999999876 5555555555554444
Q ss_pred hh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccc
Q 014047 304 AL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGA 382 (431)
Q Consensus 304 ~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~ 382 (431)
.+ ...+++.+++.|++.+.......+++.|.+++++++...+..+....++..+ +|.+++.+.+..+
T Consensus 91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g----------- 158 (401)
T PRK11043 91 VESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPAL-APLLGAWLLNHFG----------- 158 (401)
T ss_pred hcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-----------
Confidence 33 3456677788899888877777888999999888888999988888899988 8989999988776
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Q 014047 383 ECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 383 ~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
|++.|++.+++.++..++.+.+
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 159 --WQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998888777766655444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-10 Score=114.32 Aligned_cols=184 Identities=18% Similarity=0.157 Sum_probs=132.8
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhC-CCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALG-VNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
.+++|+|++....+..++.......+.++.+.|+++.| ++.... ..++..++-.+.-...+++..|+|.|+.+
T Consensus 201 ~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll---- 276 (400)
T PF03825_consen 201 LKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLL---- 276 (400)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH----
Confidence 67999999998888888888777778888899999997 554443 55566677777778888888888888665
Q ss_pred HHHHHHHHHHHHHHHHHhh-hh-hHHHH----HHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHH-HHHhHHHHH
Q 014047 286 WITCTHIMMILTFLLYASA-LS-GTLYA----ATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILL-GNPIGALLF 358 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~----~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~lg~~i~ 358 (431)
.++.+..++=..+++.. ++ +..+. ...+.|+.+|..+.....++.+.+|++.++++.++.+. ...+|..+
T Consensus 277 --~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i- 353 (400)
T PF03825_consen 277 --LLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAI- 353 (400)
T ss_pred --HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH-
Confidence 55555555544444443 23 22222 23468999999999999999999999999999999885 56799999
Q ss_pred hhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 359 SGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 359 ~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
|..++|+++|+.+.+.. ..|...+.+.+++.++..++.+++
T Consensus 354 G~~igG~l~~~~g~~~~-------~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 354 GSLIGGWLYDAFGARGM-------FDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHhcchhh-------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999873210 113344555555555555544443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-10 Score=117.49 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=99.0
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHhhh
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL----------SGTLYAATVLLGVCYGV 322 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~G~~~g~ 322 (431)
+.++..+...+..++.+++-+|.++|...+ ..+.+++++.+++++.+.... ..++++..++.|+|.+.
T Consensus 321 ~~s~n~i~iil~~p~~~~~~~~l~~r~~~~--~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 321 YQALNPFWIMIGSPILAAIYNKMGDRLPMP--HKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhCcCCCcH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 666667777777777777777777664332 334666777777766654322 23667778899999999
Q ss_pred hhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccccc-ccccHHHHHHHHHHHHHHHH
Q 014047 323 IYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIG-AECFRLTFLVLAGVCGLGTI 401 (431)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~i~~i 401 (431)
..+...+++.+..|++.||...|+..+...+|+.+ +..+.+........ ..... ..++...|...++.+++..+
T Consensus 399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~-~g~~~~~~~~~~~~----~~~~~~~~~~~~~f~~~~~~~~~~a~ 473 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALI-AGYVANLMAVPDNV----TDPLMSLEVYGRVFLQIGIATAVIAV 473 (500)
T ss_pred HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccc----ccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888887777777 33344322110000 00000 01277888887777665555
Q ss_pred HHHHHHhhchH
Q 014047 402 LSIILTIRIRP 412 (431)
Q Consensus 402 ~~~~~~~~~~~ 412 (431)
+.+.+.+..+|
T Consensus 474 ~~~~~~~~~~k 484 (500)
T PRK09584 474 LMLLTAPKLNR 484 (500)
T ss_pred HHHHHHHHHHH
Confidence 55544444333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=128.68 Aligned_cols=153 Identities=14% Similarity=0.202 Sum_probs=117.7
Q ss_pred HHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhh-hHH
Q 014047 233 TVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALS-GTL 309 (431)
Q Consensus 233 ~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~ 309 (431)
.+..++|.+.+++|.+.... ..+.+.++..++.+++|+++||+|||+.+ ..+.++..++.+.++..+. ..+
T Consensus 37 ~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~l 110 (455)
T TIGR00892 37 AVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVV------IAGGLLASLGMILASFSSNVIEL 110 (455)
T ss_pred chhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHH------HhhHHHHHHHHHHHHHhhhHHHH
Confidence 34556788888889886655 77777788889999999999999999876 5555555555555544433 333
Q ss_pred HH-HHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHH
Q 014047 310 YA-ATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLT 388 (431)
Q Consensus 310 ~~-~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 388 (431)
++ ..++.|++.+....+..+++.+.++ ++|+++.|+.+.+..+|..+ +|.+.+.+.+..+ ||++
T Consensus 111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~-~~~l~~~l~~~~g-------------wr~~ 175 (455)
T TIGR00892 111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLST-LAPLNQYLFESFG-------------WRGS 175 (455)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHH-HHHHHHHHHHHhC-------------hHHH
Confidence 33 3477798888766667778889885 78999999999999999998 7779999998876 9999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014047 389 FLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 389 f~~~~~~~~i~~i~~~~~ 406 (431)
|++.+++.+++.+..+++
T Consensus 176 f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 176 FLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999988877766554444
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.9e-12 Score=126.92 Aligned_cols=172 Identities=14% Similarity=0.051 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHHHhC--CCcch-h-----HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHH
Q 014047 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALG--VNDTT-E-----LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWIT 288 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~s~~~-~-----~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~ 288 (431)
++...++.++-+.-...+.+..|.+.++++ .++.. . ..+...++..+|.+++|+++||+|||+.+ .
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l------~ 91 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKIL------A 91 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH------H
Confidence 344445555555555556666777777764 33321 1 24666788999999999999999999887 7
Q ss_pred HHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHh
Q 014047 289 CTHIMMILTFLLYASALSG---------TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFS 359 (431)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~ 359 (431)
+++++++++.++.++.++. .+++.+++.|++.|+.++...+++.|.+|+++||...++...+..+|..+ +
T Consensus 92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~l-g 170 (490)
T PRK10642 92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVL-G 170 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH-H
Confidence 7777777777666654432 26778899999999999999999999999999999999988887787777 5
Q ss_pred hhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHH
Q 014047 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGT 400 (431)
Q Consensus 360 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~ 400 (431)
+.+...+....+. ......+||+.|++.+++.+++.
T Consensus 171 ~~~~~~~~~~~~~-----~~~~~~gWR~~f~i~~~~~l~~~ 206 (490)
T PRK10642 171 AGVVVLISTIVGE-----ANFLDWGWRIPFFIALPLGIIGL 206 (490)
T ss_pred HHHHHHHHHhcCH-----HHhcCccHHHHHHHHHHHHHHHH
Confidence 5444433321110 00001249999998766555433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=127.54 Aligned_cols=191 Identities=10% Similarity=0.064 Sum_probs=131.9
Q ss_pred hhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHH
Q 014047 212 FVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWIT 288 (431)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~ 288 (431)
..++.++..++.++......+.+....+.+.+ ++|++..+. ..+++.+...++++..|++.||+|.|+++ .
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~------~ 104 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWT------V 104 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------H
Confidence 34567888888888887777777777777766 789998776 88888999999999999999999999876 5
Q ss_pred HHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHH---h
Q 014047 289 CTHIMMILTFLLYASA------LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLF---S 359 (431)
Q Consensus 289 ~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~---~ 359 (431)
++.++..+..+..... +...+++..++.|++ |..++.....+++.||++++|++.|+.....++|..+. .
T Consensus 105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555555555432 334677888999997 77888888999999999999999999965555555441 3
Q ss_pred hhHHH-HHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 360 GLLAG-KLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 360 p~i~g-~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
|.+.+ .+.+..+.......-.+..+|+.++++..++.+++.++.+++.++
T Consensus 184 p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 184 PLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33332 233433311000000113348888877777777766666655333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=127.32 Aligned_cols=150 Identities=11% Similarity=0.034 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHH
Q 014047 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~ 293 (431)
.++..+++.++..........+++.+.+++|.+..+. ..+.+.++..++.+++|+++||+|||+.+ ..+..+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l------~~~~~~ 87 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTM------MIGLLL 87 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH------HHHHHH
Confidence 4455555655555555555667788888899887765 88899999999999999999999999877 444444
Q ss_pred HHHHHHHH---Hhh--hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHh
Q 014047 294 MILTFLLY---ASA--LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYD 368 (431)
Q Consensus 294 ~~~~~~~~---~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~ 368 (431)
..++.+.+ ... +...+++.+++.|++.+.......+.+.+.+++++|+++.|+.+.+..+|..+.+|.+.+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~ 167 (402)
T TIGR00897 88 WCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP 167 (402)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44443322 221 2334566778889888877777777888999999999999999999999874338888888887
Q ss_pred hhh
Q 014047 369 AEA 371 (431)
Q Consensus 369 ~~~ 371 (431)
..+
T Consensus 168 ~~g 170 (402)
T TIGR00897 168 AFG 170 (402)
T ss_pred ccc
Confidence 765
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-12 Score=125.12 Aligned_cols=163 Identities=17% Similarity=0.074 Sum_probs=123.1
Q ss_pred hhHhHHHHHHHHHHhhhhHHHHHhhHHHHH-HHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHH
Q 014047 213 VKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITC 289 (431)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~ 289 (431)
.++.++.+.+..++...........+|.+. +++|.|.... ..+.+.++..++++++|+++||+|||+.+ .+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l------~~ 86 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSA------LQ 86 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHH------HH
Confidence 455666777776666666666777888765 5679987765 88999999999999999999999999877 33
Q ss_pred HHHHHHHHHH---HHHh------hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhh
Q 014047 290 THIMMILTFL---LYAS------ALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG 360 (431)
Q Consensus 290 ~~~~~~~~~~---~~~~------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p 360 (431)
+.+...++.+ +... .+...+++.+++.|++.+...+...+++.|.+|+++|+++.++...+..+|..+ +|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~-g~ 165 (392)
T PRK12382 87 GMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAA-GA 165 (392)
T ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHH-HH
Confidence 3333322221 1111 122456777899999999888888888999999999999999999988888888 88
Q ss_pred hHHHHHHhhhhcccCCcccccccccHHHHHHHHHH
Q 014047 361 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGV 395 (431)
Q Consensus 361 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 395 (431)
.+++.+.+..+ |+..+.+..++
T Consensus 166 ~~~~~l~~~~g-------------~~~~~~~~~~~ 187 (392)
T PRK12382 166 PLGLLLHSHFG-------------FAALALTTMVL 187 (392)
T ss_pred HHHHHHHhccC-------------hHHHHHHHHHH
Confidence 88888888766 88876655443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-11 Score=120.45 Aligned_cols=157 Identities=11% Similarity=0.058 Sum_probs=115.7
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh-H-HHHHHHHHhhhhhhhhHHhHhhhcccCcchH
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE-L-LCLFSLCNFAGRLGSGVLSEHYVRSKAIPRT 284 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~-~-~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~ 284 (431)
+++++|++.++...+..++............|++.++. |.+.... + .....++..++.+++++++||+|+|+.+
T Consensus 221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~--- 297 (448)
T PRK09848 221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTF--- 297 (448)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH---
Confidence 46788999999988888877776666666777777754 6655443 3 3333567788999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC-------CchhhHHHHHHHHHHhH
Q 014047 285 VWITCTHIMMILTFLLYASAL---SGTLYAATVLLGVCYGVIYSLMVPTASELFGL-------KHFGLIYNFILLGNPIG 354 (431)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~lg 354 (431)
.++.++..++.+.+.... .+.+++..++.|+|.+...+...++.+|..+. +..|...|+.+....+|
T Consensus 298 ---~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg 374 (448)
T PRK09848 298 ---LIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG 374 (448)
T ss_pred ---HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence 555555555554443322 23345556778999999988888888887754 34699999999999999
Q ss_pred HHHHhhhHHHHHHhhhh
Q 014047 355 ALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 355 ~~i~~p~i~g~i~~~~~ 371 (431)
+.+ ++.+.|.+.+..|
T Consensus 375 ~ai-g~~i~g~~l~~~G 390 (448)
T PRK09848 375 QAI-GGSIPAFILGLSG 390 (448)
T ss_pred HHH-HHHHHHHHHHHcC
Confidence 999 7889999887765
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-12 Score=124.28 Aligned_cols=166 Identities=17% Similarity=0.069 Sum_probs=125.1
Q ss_pred hHhHHHHHHHHHHhhhhHHHHHhhHHHHH-HHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHH
Q 014047 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCT 290 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~ 290 (431)
++++..+.+..+.......+....+|.+. +++|.+.... ..+...++..+++++.|+++||+|||+.+ ..+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l------~~~ 87 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV------VFG 87 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH------HHH
Confidence 34555566666666666667777888765 4678887765 88899999999999999999999999988 444
Q ss_pred HHHHHHHHHHHH---hhh------hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhh
Q 014047 291 HIMMILTFLLYA---SAL------SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGL 361 (431)
Q Consensus 291 ~~~~~~~~~~~~---~~~------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~ 361 (431)
.++.+++...+. ..+ ...+++.+++.|++.+...+....++.|.+++++|+++.++...+..+|..+ ++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~ 166 (399)
T PRK05122 88 LCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI-GAP 166 (399)
T ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH-HHH
Confidence 444333322211 111 1246777899999999988888888999999999999999988888888888 788
Q ss_pred HHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHH
Q 014047 362 LAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLG 399 (431)
Q Consensus 362 i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~ 399 (431)
+++.+.+..+ |+..+++..++.++.
T Consensus 167 l~~~l~~~~g-------------~~~~~~~~~~~~~~~ 191 (399)
T PRK05122 167 LGVLLYHWGG-------------LAGLGLLIMLLALLG 191 (399)
T ss_pred HHHHHHHccc-------------HHHHHHHHHHHHHHH
Confidence 8899888776 998887766554443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-11 Score=119.08 Aligned_cols=154 Identities=17% Similarity=0.080 Sum_probs=99.1
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
++.+|++.+|...+..+........+....+.+.++ +|++.... ......++..++.++.+++.||++++...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~---- 276 (394)
T PRK11652 201 RTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ---- 276 (394)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 456677777766555544444444444556667776 58886654 55556677778888888888888732111
Q ss_pred HHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhH
Q 014047 286 WITCTHIMMILTFLLYAS---ALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLL 362 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i 362 (431)
......+..+....... .+...++...++.|++.+...+...+...|.+| +++|++.++.+....+|..+ ++.+
T Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~-~~~~ 353 (394)
T PRK11652 277 -SVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGL-AALL 353 (394)
T ss_pred -HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHH-HHHH
Confidence 11222222222111111 112345556678888888888888888889886 67899999999999999998 7777
Q ss_pred HHHHHhh
Q 014047 363 AGKLYDA 369 (431)
Q Consensus 363 ~g~i~~~ 369 (431)
.|.+.+.
T Consensus 354 ~~~~~~~ 360 (394)
T PRK11652 354 SAMLPQT 360 (394)
T ss_pred HHHccCC
Confidence 7776543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-11 Score=114.17 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=121.8
Q ss_pred CHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
...+++|+|.++...+..++..+.....-.+++.|+.+ .|.+..++ .++.+..+.++||+++-++..|+...+.+
T Consensus 228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~L-- 305 (422)
T COG0738 228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYL-- 305 (422)
T ss_pred hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH--
Confidence 45889999999999999999999999999999999998 58887765 99999999999999999999999877665
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH
Q 014047 284 TVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
....+...+.++.....+......+.++.|+.++..+|...+...+..| ++...+.++ -.+..+|+.+ -|.+.
T Consensus 306 ----af~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~-l~maivGGAi-iP~l~ 378 (422)
T COG0738 306 ----AFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGL-LVMAIVGGAI-IPPLQ 378 (422)
T ss_pred ----HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cccccccee-eeeheecchH-HHHHH
Confidence 2322222233333333444556667788999999999999999999998 554444444 4455677777 69999
Q ss_pred HHHHhhhh
Q 014047 364 GKLYDAEA 371 (431)
Q Consensus 364 g~i~~~~~ 371 (431)
|++.|+.+
T Consensus 379 G~i~d~~g 386 (422)
T COG0738 379 GVIADMFG 386 (422)
T ss_pred HHHHHhhh
Confidence 99999987
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-12 Score=122.97 Aligned_cols=148 Identities=18% Similarity=0.142 Sum_probs=122.1
Q ss_pred HHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-hhH
Q 014047 232 VTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-SGT 308 (431)
Q Consensus 232 ~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~ 308 (431)
......+|.+.+++|.|..+. ..+.+.++..++.+..|+++||+|||+.+ ..++++.+++.+..+..+ ...
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l------~~~~~l~~~~~~~~~~a~~~~~ 99 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSV------AISLLLIAVGALMRELYPQSAL 99 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHH------HHHHHHHHHHHHHHHHCcchHH
Confidence 345567888989999987765 88889999999999999999999999888 788888888888777655 356
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHH
Q 014047 309 LYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLT 388 (431)
Q Consensus 309 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 388 (431)
+++.+++.|++.+...+..+.++.+.++ ++|+.+.|+...+..+|..+ ++.+.+.+.++... ||..
T Consensus 100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-g~~~~~~l~~~~~~------------w~~~ 165 (393)
T PRK09705 100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGL-GAAITPWLVQHSET------------WYQT 165 (393)
T ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC------------HHHH
Confidence 7888899999999998888899999986 78999999999988899988 77788888776522 9988
Q ss_pred HHHHHHHHHHH
Q 014047 389 FLVLAGVCGLG 399 (431)
Q Consensus 389 f~~~~~~~~i~ 399 (431)
+.+.++..++.
T Consensus 166 ~~~~~~~~~~~ 176 (393)
T PRK09705 166 LAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHHH
Confidence 87665554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.4e-12 Score=125.03 Aligned_cols=177 Identities=14% Similarity=0.162 Sum_probs=117.4
Q ss_pred HHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
+.+|++.+|.+++.+++.......+...+|.++++ +|++..+. ..+...++..++++++|+++||+|||+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~----- 79 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL----- 79 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-----
Confidence 46678899999998888887777788888888886 69998765 89999999999999999999999999876
Q ss_pred HHHHHHHHHHHHH---HHHhhhhh--HHHHHHHHHHHHhhhh----hhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 287 ITCTHIMMILTFL---LYASALSG--TLYAATVLLGVCYGVI----YSLMVPTASELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 287 ~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~l~G~~~g~~----~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
.++..+..++.. ........ .......+.++..+.. .+....+..+ + .+++|..+|.......+|..+
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i 156 (420)
T PRK09528 80 -LWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWAL 156 (420)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHH
Confidence 222222111111 11111100 1111122223333322 2233333322 2 245677888888888999999
Q ss_pred HhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 358 FSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 358 ~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
+|.+.|.+.+. + |+..|++.+++++++.++.+...++
T Consensus 157 -~~~~~g~l~~~-~-------------~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 157 -CAFIAGILFNI-N-------------PQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred -HHHHHHHHHhc-C-------------chHhHHHHHHHHHHHHHHHhccccc
Confidence 78899988764 3 8899998887777766555444333
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6e-12 Score=127.31 Aligned_cols=148 Identities=13% Similarity=0.086 Sum_probs=107.3
Q ss_pred CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh----------h---hhHHH
Q 014047 246 GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA----------L---SGTLY 310 (431)
Q Consensus 246 g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~ 310 (431)
+.+.... ..+.+.++..++.+++|+++||+|||+.+ .++..+..++.+..+.. + ...++
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~------~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFV 124 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Confidence 5554443 88999999999999999999999999887 45444444444433321 1 12457
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHH
Q 014047 311 AATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFL 390 (431)
Q Consensus 311 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~ 390 (431)
+.+++.|++.|...+..+++++|.+|+++||++.++...+..+|..+ ++.+.+.+...... .-....+||+.|+
T Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~-----~~~~~~gWr~~f~ 198 (479)
T PRK10077 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV-VYFVNYFIARSGDA-----SWLNTDGWRYMFA 198 (479)
T ss_pred HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhccCcc-----cccccCChHHHHH
Confidence 78899999999999999999999999999999999999999999888 66554444321110 0001235999999
Q ss_pred HHHHHHHHHHHHHHH
Q 014047 391 VLAGVCGLGTILSII 405 (431)
Q Consensus 391 ~~~~~~~i~~i~~~~ 405 (431)
+.++..++..+..++
T Consensus 199 ~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 199 SEAIPALLFLMLLYF 213 (479)
T ss_pred HHHHHHHHHHHHHHc
Confidence 887777766554443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-11 Score=121.23 Aligned_cols=166 Identities=16% Similarity=0.027 Sum_probs=112.1
Q ss_pred HHHHHhhhhHHHHHhhHHHHHHHhC---CCcchh-----HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHH
Q 014047 222 FVYFLGVGAGVTVLNNLAQIGVALG---VNDTTE-----LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~g---~s~~~~-----~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~ 293 (431)
+..++.+.....+....|.+.++++ .+..+. ..+...++..+|.+++|+++||+|||+.+ ..+.++
T Consensus 29 ~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l------~~~~~~ 102 (432)
T PRK10406 29 SGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM------LISVCM 102 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHH
Confidence 3344444444555566677777764 333321 44555666779999999999999999887 666666
Q ss_pred HHHHHHHHHhhhh---------hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHH
Q 014047 294 MILTFLLYASALS---------GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAG 364 (431)
Q Consensus 294 ~~~~~~~~~~~~~---------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g 364 (431)
..++.+..++.+. ..+++.+++.|++.|+.++...+++.|.+|+++||...++...+...|..+ ++.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~-~~~~~~ 181 (432)
T PRK10406 103 MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL-ALLVVV 181 (432)
T ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH-HHHHHH
Confidence 6666555544322 247788899999999999999999999999999999999888777777776 554443
Q ss_pred HHHhhhhcccCCcccccccccHHHHHHHHHHHHHH
Q 014047 365 KLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLG 399 (431)
Q Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~ 399 (431)
.+....... -....+||++|++.++..++.
T Consensus 182 ~~~~~~~~~-----~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 182 VLQQTLEDA-----ELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHhCCHH-----HHhccchHHHHHHHHHHHHHH
Confidence 333211000 000124999999877665544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-10 Score=110.35 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=136.9
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcc----hh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcc
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT----TE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIP 282 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~----~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~ 282 (431)
.+++|+|++|.+.+...........+....+.|.+.+--+.. .. ..++..+..++.-.+..++.+|+|.|+.+
T Consensus 214 ~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~L- 292 (412)
T PF01306_consen 214 LSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLL- 292 (412)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHH-
Confidence 678899999998887776666666666667777776533322 11 67777788888999999999999999776
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHH-HHHHHhHHHHHhh
Q 014047 283 RTVWITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFI-LLGNPIGALLFSG 360 (431)
Q Consensus 283 r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~lg~~i~~p 360 (431)
.++..++++=....+..+ ++.+.+.-.+.|+-++.......-++.+.++++..++.+.+. +.+.++|..++ +
T Consensus 293 -----llag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~-s 366 (412)
T PF01306_consen 293 -----LLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL-S 366 (412)
T ss_dssp -----HHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH-H
T ss_pred -----HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH-h
Confidence 555555555555555444 456667778999999888888889999999999999999986 58889999995 5
Q ss_pred hHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 361 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 361 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
.+.|.++|+.| ++.+|++++.+.++..++..+..++
T Consensus 367 ~~~G~lyd~~G-------------~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 367 PLAGYLYDRIG-------------FQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hhHHhhHhhcC-------------cHHHHHHHHHHHHHHHHHheeeecC
Confidence 59999999998 9999999998888777777665443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-09 Score=109.68 Aligned_cols=180 Identities=13% Similarity=0.055 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCc------chhHHHHHHHHHhhhhhhhhHHhHhhhcccCcch-HHHH
Q 014047 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND------TTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR-TVWI 287 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~------~~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r-~~~~ 287 (431)
.+..+++...+.+.......+.++.+.++ .+.+. ...+.++..+...+..++..++-.++.||..-++ ..-+
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 34444444444454444455556666654 23221 1226666666666776666655556665421111 1123
Q ss_pred HHHHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 288 TCTHIMMILTFLLYAS----------ALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 288 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
.+++++.++++..+.. .+.+++++..++.++|.....+...+.+.+..|++.||+..|+......+|..+
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l 432 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL 432 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666555442 233567888899999999999999999999999999999999999999999998
Q ss_pred HhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 358 FSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 358 ~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
++.+.....+..+ |...|...++++++..++.+++.+.
T Consensus 433 -~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 433 -GGYLATFGAVPQG-------------VTGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred -HHHHHHHHhcccc-------------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667766655544 7777777777766666665554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.5e-12 Score=116.61 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=98.1
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTA 331 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~ 331 (431)
=+...++...-|.++.+++.||+|||+.+ ...++++++..+++.... .....+..+..-++..+.+...+++.
T Consensus 386 dllitslaefPGlLIt~~iverlGRKkTM------al~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYt 459 (528)
T KOG0253|consen 386 DLLITSLAEFPGLLITGVIVERLGRKKTM------ALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYT 459 (528)
T ss_pred HHHHHHHhhCCchhHHHHHHHHhcchhHH------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEec
Confidence 34455677788999999999999999998 666666666655544432 22333333334445556667778999
Q ss_pred HHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhch
Q 014047 332 SELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIR 411 (431)
Q Consensus 332 ~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 411 (431)
+|++|++.|+++.|....+..+|+++ .|++. ...+.. -..+..+.+++++++.+...++..++|
T Consensus 460 PEVyPTavRatgvGtcSsmaRIggI~-~p~iA-~~~e~s--------------~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 460 PEVYPTAVRATGVGTCSSMARIGGIF-SPVIA-MRAELS--------------TSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred CcccchhhhhcchhhhhhHHhhhhhh-hhHHH-HHhccc--------------eeehHHHHHHHHHHHHHHheeeeeccC
Confidence 99999999999999999999999999 89666 333322 223445556677777787777777765
Q ss_pred H
Q 014047 412 P 412 (431)
Q Consensus 412 ~ 412 (431)
.
T Consensus 524 G 524 (528)
T KOG0253|consen 524 G 524 (528)
T ss_pred C
Confidence 4
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-12 Score=128.36 Aligned_cols=152 Identities=20% Similarity=0.238 Sum_probs=112.6
Q ss_pred HHHhhHHHHHHHhCCC--------cchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 014047 233 TVLNNLAQIGVALGVN--------DTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYA 302 (431)
Q Consensus 233 ~~~~~l~~~~~~~g~s--------~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~ 302 (431)
.+...++.+..+++.+ .... ..+.+.++..++.+++|+++||+|||+.+ .++.++..++.++..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~------~~~~~~~~~~~~~~~ 119 (481)
T TIGR00879 46 VIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL------LIIALLFVIGAILMG 119 (481)
T ss_pred hhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH------HHHHHHHHHHHHHHH
Confidence 4445566666665554 3333 88889999999999999999999999876 555555555554443
Q ss_pred hh-hh---hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH---HHHHhhhhcccC
Q 014047 303 SA-LS---GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA---GKLYDAEATKQG 375 (431)
Q Consensus 303 ~~-~~---~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~---g~i~~~~~~~~~ 375 (431)
.. .. ..+++.+++.|++.+...+...+++.|.+++++|+++.++.+.+..+|..+ ++.+. +...+..
T Consensus 120 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~----- 193 (481)
T TIGR00879 120 LAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV-AYGFGSGKVSLNNTL----- 193 (481)
T ss_pred HhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH-HHHHHHHhhcCCCCc-----
Confidence 22 21 267778899999999999999999999999999999999999999999999 77666 3322333
Q ss_pred CcccccccccHHHHHHHHHHHHHHHHHHH
Q 014047 376 SSTCIGAECFRLTFLVLAGVCGLGTILSI 404 (431)
Q Consensus 376 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 404 (431)
+||+.|++.++..++..+..+
T Consensus 194 --------~w~~~f~~~~~~~~~~~~~~~ 214 (481)
T TIGR00879 194 --------GWRIPLGLQLIPAGLLFLGLF 214 (481)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHh
Confidence 399999986666555544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-11 Score=119.64 Aligned_cols=171 Identities=15% Similarity=0.002 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhHHHHH-HHh--CCCcchh-H-----HHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 216 DFWLLWFVYFLGVGAGVTVLNNLAQIG-VAL--GVNDTTE-L-----LCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~--g~s~~~~-~-----~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
.++...+..++-+.....+....|.+. +++ +.++... . .+...++..+|.++.|+++||+|||+.+
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l----- 97 (438)
T PRK09952 23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML----- 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH-----
Confidence 344444444444444444444445443 343 5554432 1 2344566788899999999999999877
Q ss_pred HHHHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 287 ITCTHIMMILTFLLYASALSG---------TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
.++..+..++.++.++.++. .+++.+++.|++.|+.++....++.|.+|+++||...+....+..+|..+
T Consensus 98 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 98 -MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred -HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 66666666666666554432 36777899999999999888999999999999999999999888888888
Q ss_pred HhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHH
Q 014047 358 FSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGL 398 (431)
Q Consensus 358 ~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i 398 (431)
++.+.+.+....+.. -....+||..|++.++..++
T Consensus 177 -~~~~~~~l~~~~~~~-----~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 177 -STGLVSLISMMTTDE-----QFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred -HHHHHHHHHHhCCHH-----HhhccChHHHHHHHHHHHHH
Confidence 555665554322100 00013499999987665443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=120.33 Aligned_cols=149 Identities=11% Similarity=0.028 Sum_probs=122.3
Q ss_pred hHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHH
Q 014047 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTH 291 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~ 291 (431)
++.+|.+.+..++...........+|.+.+++|.|..+. ..+.+.++..+++++.|+++||+|||+.+ ..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~------~~~~ 78 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSY------YLAS 78 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHH
Confidence 456788888888877777778889999999999987665 88899999999999999999999999877 5555
Q ss_pred HHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhh
Q 014047 292 IMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDA 369 (431)
Q Consensus 292 ~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~ 369 (431)
++..++.......+ .+.+++.+++.|++.+...+.....+.+..++++|+++.+.......+|..+ +|.+.+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~ 156 (381)
T PRK03633 79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVL-GQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccc
Confidence 55555555554433 3566778899999999888877777788888899999999999999999999 88888887665
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.1e-11 Score=118.45 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=106.1
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh-HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE-LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~-~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
+++.+|++.++.+.+..++............+++.+.. +...... ......+...++.+++++++||+|+|+.+
T Consensus 222 ~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~---- 297 (444)
T PRK09669 222 LKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF---- 297 (444)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH----
Confidence 36778999998887776655444433333333333332 3222222 44555677888999999999999998776
Q ss_pred HHHHHHHHHHH-HHHHHHh-h-hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhc-------CCchhhHHHHHHHHHHhHH
Q 014047 286 WITCTHIMMIL-TFLLYAS-A-LSGTLYAATVLLGVCYGVIYSLMVPTASELFG-------LKHFGLIYNFILLGNPIGA 355 (431)
Q Consensus 286 ~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~ 355 (431)
..+.++..+ +...+.. . +...+++..++.|++.+...+..+++++|..+ .+..|..+|+.+....+|.
T Consensus 298 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~ 375 (444)
T PRK09669 298 --KWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGL 375 (444)
T ss_pred --HHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHH
Confidence 333332222 2212222 1 22345666678899999999999999998873 4446778899999999999
Q ss_pred HHHhhhHHHHHHhhhhc
Q 014047 356 LLFSGLLAGKLYDAEAT 372 (431)
Q Consensus 356 ~i~~p~i~g~i~~~~~~ 372 (431)
.+ ++.+.|.+++..|-
T Consensus 376 al-g~~i~g~ll~~~Gy 391 (444)
T PRK09669 376 AI-GGAVVGWILAWVDY 391 (444)
T ss_pred HH-HHHHHHHHHHHcCC
Confidence 99 89999999988764
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=119.59 Aligned_cols=173 Identities=15% Similarity=0.226 Sum_probs=121.1
Q ss_pred hHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHH
Q 014047 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCT 290 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~ 290 (431)
||.+|.+....++.+.....+..++|.++++ +|++..+. ..+...+...+++++.|+++||+|||+.+ ....+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~---~~~~~~ 77 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHL---LWIISG 77 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH---HHHHHH
Confidence 5788999988888888888888899998875 59988765 89999999999999999999999999877 221122
Q ss_pred HHHHHHHHHHHHhhh-----h-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHH
Q 014047 291 HIMMILTFLLYASAL-----S-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAG 364 (431)
Q Consensus 291 ~~~~~~~~~~~~~~~-----~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g 364 (431)
..+....+..+.... . ...++..++.|++.+...+....+..+.- ++++..+|.......+|..+ +|.++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~-g~~~~g 154 (396)
T TIGR00882 78 LLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWAL-CASIAG 154 (396)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHH-HHHHHh
Confidence 221111111111111 1 12334456667777777777666666643 33456677777888899998 888888
Q ss_pred HHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 365 KLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
.+.+. + |+..|++.+++.++..++.+..
T Consensus 155 ~l~~~-~-------------~~~~f~~~~~~~~~~~~~~~~~ 182 (396)
T TIGR00882 155 ILFSI-D-------------PQIVFWLGSGFALILMLLLMFA 182 (396)
T ss_pred hhhcc-C-------------chHHHHHHHHHHHHHHHHHHHh
Confidence 77653 4 9999998888777766555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=119.12 Aligned_cols=168 Identities=17% Similarity=0.048 Sum_probs=118.0
Q ss_pred HHHHhhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHH
Q 014047 223 VYFLGVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFL 299 (431)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~ 299 (431)
.+++...........+|.+++ ++|.+.... ..+.+.+...+..++.|+++||+|||+.+ ...+.++..++..
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~-----~~~~~~~~~~~~~ 79 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGL-----ILFCCLLAALACL 79 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH-----HHHHHHHHHHHHH
Confidence 344455555566677887765 579887765 77788888999999999999999998765 1233333334434
Q ss_pred HHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhH--HHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCC
Q 014047 300 LYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLI--YNFILLGNPIGALLFSGLLAGKLYDAEATKQGS 376 (431)
Q Consensus 300 ~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~ 376 (431)
+....++ ..+++..++.|.+.+...+...++..|..+++.|+.+ .+.......+|..+ +|.+.+.+.+..+
T Consensus 80 ~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i-g~~~~~~l~~~~~----- 153 (375)
T TIGR00899 80 LFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVI-GPPLAFWLALGFG----- 153 (375)
T ss_pred HHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHH-hhhHHHHHHHhcc-----
Confidence 4444333 3445556667766666667777788888776666644 57777788899998 8889999988776
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 377 STCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 377 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
||+.|++.+++.++..++.++..++
T Consensus 154 --------~~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 154 --------FTVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999888777776665554433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=119.56 Aligned_cols=179 Identities=13% Similarity=0.089 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHH
Q 014047 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMM 294 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~ 294 (431)
++.+.+.++............+|.+.+++|.+..+. ..+...++..++.+..|++.||+|||+.+ .++.++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~------~~g~~l~ 78 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGI------LLGLFLY 78 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHH
Confidence 455555555444444445577888888889987765 88899999999999999999999999877 6777776
Q ss_pred HHHHHHHHhh----hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 295 ILTFLLYASA----LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 295 ~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
+++.+++... +...+++.+++.|+|.|...+..+.++.+..+++++++..++.+....+|..+ +|.+.+.+....
T Consensus 79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-g~~i~~~l~~~~ 157 (410)
T TIGR00885 79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII-GMVVAQQLILSN 157 (410)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC
Confidence 6666554321 22456777889999999999999999999998889999999999999999999 888888775332
Q ss_pred hcccCCcc-------------cccccccHHHHHHHHHHHHHHHHH
Q 014047 371 ATKQGSST-------------CIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 371 ~~~~~~~~-------------~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
........ -....+||++|.+.+++.++..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10000000 001134999999888766655443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=110.49 Aligned_cols=152 Identities=17% Similarity=0.218 Sum_probs=121.8
Q ss_pred hHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHH
Q 014047 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCT 290 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~ 290 (431)
.|.||.+.+++++.+.+.+-+...-|.+.++ +|.|+..+ +.+.....+++.+++.|.++||+|++-.. ...+
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~w-----v~~a 337 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWW-----VASA 337 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehh-----HHHH
Confidence 5789999999999888877777777877775 49998776 88888888889999999999999987433 3444
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 291 HIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
.+....+...+.+. ...-+....+.|..+.......+..++.++|.++.|+++|..+...++|-.+ .|++.|.+.|+.
T Consensus 338 ~~~tl~~H~~l~Ft-~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~-i~Iiag~i~d~~ 415 (459)
T KOG4686|consen 338 CILTLLGHSGLFFT-FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF-IPIIAGFIADGD 415 (459)
T ss_pred HHHHHHHhhhHHhh-hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH-HhhhhheeecCC
Confidence 44444555444432 2234666778888888888888889999999999999999999999999999 899999999987
Q ss_pred hc
Q 014047 371 AT 372 (431)
Q Consensus 371 ~~ 372 (431)
++
T Consensus 416 g~ 417 (459)
T KOG4686|consen 416 GS 417 (459)
T ss_pred Cc
Confidence 64
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.9e-11 Score=116.83 Aligned_cols=158 Identities=19% Similarity=0.239 Sum_probs=124.1
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh-HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE-LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~-~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
+++++|+|.++.+....++............+++.+.. |.+.... ......++..++.+++++++||+|+|+.+
T Consensus 218 ~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~---- 293 (428)
T PF13347_consen 218 LRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY---- 293 (428)
T ss_pred hhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh----
Confidence 47788999999888888887777766777777787765 6554333 67778899999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhc-------CCchhhHHHHHHHHHHhHH
Q 014047 286 WITCTHIMMILTFLLYASA---LSGTLYAATVLLGVCYGVIYSLMVPTASELFG-------LKHFGLIYNFILLGNPIGA 355 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~ 355 (431)
..+.++.+++.+++... +.+.+++..++.|++.+..+...+++++|..+ .+..|..+|+.+....++.
T Consensus 294 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~ 371 (428)
T PF13347_consen 294 --IIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQ 371 (428)
T ss_pred --hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHH
Confidence 55555555555544333 34567777889999999999999999988775 3456899999999999999
Q ss_pred HHHhhhHHHHHHhhhhc
Q 014047 356 LLFSGLLAGKLYDAEAT 372 (431)
Q Consensus 356 ~i~~p~i~g~i~~~~~~ 372 (431)
.+ ++.+.|.+.+..|-
T Consensus 372 ~l-a~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 372 GL-AGAIVGLLLALVGY 387 (428)
T ss_pred HH-HHHHHHHHHHHhCc
Confidence 99 77889988877653
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.6e-12 Score=117.19 Aligned_cols=182 Identities=13% Similarity=0.075 Sum_probs=122.8
Q ss_pred CHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
++++++++|..+.........+.........++.+..+ +..+.-.. .....++...+|..+.|.++||+++.+..
T Consensus 262 ~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl-- 339 (464)
T KOG3764|consen 262 PMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWL-- 339 (464)
T ss_pred cHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHH--
Confidence 35889999998888877776666666777778876654 45332122 66677889999999999999999854332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC---C---chhhHHHHHHHHHHhHHH
Q 014047 284 TVWITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGL---K---HFGLIYNFILLGNPIGAL 356 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~---~---~~g~~~g~~~~~~~lg~~ 356 (431)
..+.++++..+........+. ..+++..+..+++.+...+............ + .+|..+++...+..+|..
T Consensus 340 --~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a 417 (464)
T KOG3764|consen 340 --LSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYA 417 (464)
T ss_pred --HHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhh
Confidence 123333333333333333333 2445555555666555554444333333322 2 478999999999999999
Q ss_pred HHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 357 LFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 357 i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
+ ||.++|.+++..| |+|...+.++..++-.-+..++
T Consensus 418 ~-GP~~gg~iv~~iG-------------F~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 418 I-GPTFGGSLVEAIG-------------FEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred c-cccccchheeehh-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999988 9998888888777765554444
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-12 Score=127.30 Aligned_cols=144 Identities=13% Similarity=0.113 Sum_probs=114.0
Q ss_pred HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh--hh-hhHHHHHHHHHHH
Q 014047 244 ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS--AL-SGTLYAATVLLGV 318 (431)
Q Consensus 244 ~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~G~ 318 (431)
+++++.... +.+.+.++..++.+++|+++||+|+|+.+ ..+.++..++.++... .. ...+++.+++.|+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSI------GIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhh------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 345555543 88899999999999999999999999877 4555444444443322 12 2456777899999
Q ss_pred HhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh-hcccCCcccccccccHHHHHHHHHHHH
Q 014047 319 CYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE-ATKQGSSTCIGAECFRLTFLVLAGVCG 397 (431)
Q Consensus 319 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~ 397 (431)
+.+..++....+++|.+|+++|+++.|+...+..+|..+ +|.+.+.+.+.. + |+..|++.+++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~l~~~l~~~~~g-------------w~~~f~i~~~~~~ 209 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFI-FLPISGWLCESWGG-------------WPMIFYVFGIVGC 209 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC-------------CCeehhhhhHHHH
Confidence 999999999999999999999999999999999999999 788999988774 5 9999999888776
Q ss_pred HHHHHHHHHH
Q 014047 398 LGTILSIILT 407 (431)
Q Consensus 398 i~~i~~~~~~ 407 (431)
+..++.+.+.
T Consensus 210 ~~~~~~~~~~ 219 (465)
T TIGR00894 210 AWSLLWFVFP 219 (465)
T ss_pred HHHHHHHHHh
Confidence 6655554443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-10 Score=109.22 Aligned_cols=181 Identities=15% Similarity=0.179 Sum_probs=141.0
Q ss_pred CHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
++++..+.+......++.++..-...........+.. ++|++..+. +....++..++|.+++|+|.||+|.|+++
T Consensus 244 t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl-- 321 (438)
T COG2270 244 TFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL-- 321 (438)
T ss_pred HHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee--
Confidence 3456666677777777776655555556666666766 679998876 66677889999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhH
Q 014047 284 TVWITCTHIMMILTFLLY-ASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLL 362 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i 362 (431)
.+++++..+.++.. ....+..+++...+.|+..|+..+..=++..+++|+++-++..|++++....++.+ +|.+
T Consensus 322 ----~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~-gp~l 396 (438)
T COG2270 322 ----MIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFL-GPFL 396 (438)
T ss_pred ----hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHH-HHHH
Confidence 45544444333333 33334566777789999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 363 AGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 363 ~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
.+.+.+.+++ -|..+....++.++++++.+.+
T Consensus 397 v~v~t~iTg~------------~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 397 VAVITQITGS------------SRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred HHHHHHHhcc------------hhhHHHHHHHHHHhhHhhEEee
Confidence 9999999886 7888888888888777665443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=7e-11 Score=120.38 Aligned_cols=144 Identities=20% Similarity=0.155 Sum_probs=104.2
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHhhhhhh
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-------SGTLYAATVLLGVCYGVIYS 325 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~G~~~g~~~~ 325 (431)
+.+...++..++.+++|+++||+|||+.+ .++.++..++.++..... ...+++.+++.|++.|+.++
T Consensus 61 ~~~~~~ig~~ig~~~~g~l~d~~Grr~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 134 (502)
T TIGR00887 61 VNGSASIGTLAGQLFFGWLADKLGRKRVY------GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP 134 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence 88888999999999999999999999876 444444444444433322 23577888999999999999
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhc----ccCCccc------ccccccHHHHHHHHHH
Q 014047 326 LMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEAT----KQGSSTC------IGAECFRLTFLVLAGV 395 (431)
Q Consensus 326 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~----~~~~~~~------~~~~~~~~~f~~~~~~ 395 (431)
..+.+++|.+|++.||++.++.+....+|..+ ++.+...+...... ..+...| ....+||+.|.+.++.
T Consensus 135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip 213 (502)
T TIGR00887 135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILA-GAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP 213 (502)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999988 67666655432211 0000000 1113599999877766
Q ss_pred HHHHHHHH
Q 014047 396 CGLGTILS 403 (431)
Q Consensus 396 ~~i~~i~~ 403 (431)
+++..+..
T Consensus 214 ~~i~~~~~ 221 (502)
T TIGR00887 214 ALLALYFR 221 (502)
T ss_pred HHHHHHHH
Confidence 66554443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=116.73 Aligned_cols=166 Identities=16% Similarity=0.065 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh---HHHHH-----HHHHhhhhhhhhHHhHhhhcccCcchHHHHH
Q 014047 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE---LLCLF-----SLCNFAGRLGSGVLSEHYVRSKAIPRTVWIT 288 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~---~~s~~-----~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~ 288 (431)
....+++.++.+.....+....|.+.++++.++.+. ..+.. .++..+|.++.|+++||+|||+.+ .
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l------~ 90 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL------I 90 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH------H
Confidence 445555666666666677788898889988766542 22222 233357889999999999999877 5
Q ss_pred HHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHh
Q 014047 289 CTHIMMILTFLLYASALSG---------TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFS 359 (431)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~ 359 (431)
.+..+..++..+....++. .+++.+++.|++.|..++....+++|.+|+++||++.++......+|..+ +
T Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~-g 169 (434)
T PRK15075 91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF-A 169 (434)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH-H
Confidence 6666666666665554332 35677899999999988888899999999999999999998888888777 6
Q ss_pred hhHHHHHHhhhhcccCCcccccccccHHHHHHHHH
Q 014047 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAG 394 (431)
Q Consensus 360 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 394 (431)
+.+++.+........ ....+||++|++...
T Consensus 170 ~~~g~~l~~~~~~~~-----~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 170 ALLGYLLNQWLSPAQ-----MAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHhCCHHH-----HhccchHHHHHHHHH
Confidence 656655532111000 001239999987543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=6e-11 Score=120.10 Aligned_cols=175 Identities=15% Similarity=0.101 Sum_probs=136.7
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
+.-+|++.|..+|++.++...+..+....++.+..+..-|+... +.....+...+..+++|.+.||+.||+.+
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrril----- 78 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRIL----- 78 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH-----
Confidence 45689999999999999998888888888887777765444433 56666788889999999999999999887
Q ss_pred HHHHHHHHHHHH---HHHHh---hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhh
Q 014047 287 ITCTHIMMILTF---LLYAS---ALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG 360 (431)
Q Consensus 287 ~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p 360 (431)
....++..+.. .++.. .+.+.+++..++.|++.....+...+++++++|+++...+.++..+..++...+ ||
T Consensus 79 -i~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~i-GP 156 (524)
T PF05977_consen 79 -ILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARII-GP 156 (524)
T ss_pred -HHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhc-cc
Confidence 33333332222 11211 123566777789999999999999999999999999999999999999999999 89
Q ss_pred hHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHH
Q 014047 361 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILS 403 (431)
Q Consensus 361 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 403 (431)
.++|.++...| ..++|.+.++..++..++.
T Consensus 157 algG~Lva~~G-------------~~~~f~inalsfl~~i~~l 186 (524)
T PF05977_consen 157 ALGGILVAFFG-------------AAAAFLINALSFLISILAL 186 (524)
T ss_pred hHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 99999999887 6778888877766654443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=100.50 Aligned_cols=132 Identities=20% Similarity=0.260 Sum_probs=104.4
Q ss_pred HHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 014047 255 CLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASE 333 (431)
Q Consensus 255 s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~ 333 (431)
+...++..++.++.|++.||+|||+.+ ..+..+..++.+...... ...+.+..++.|++.+...+....++.|
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVL------LVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345678889999999999999999776 444444444444443333 3456667788999999988999999999
Q ss_pred hhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 334 LFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 334 ~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
.+|+++|++..++.+....+|..+ +|.+.+.+.+..+ |++.|++.+.+.+++.+....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLL-GPPLGGVLAQFLG-------------WRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHH-hHHhHHHHhcccc-------------hHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999 8889999887765 9999998887777776665543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=117.23 Aligned_cols=157 Identities=10% Similarity=0.016 Sum_probs=106.7
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcch-h-HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTT-E-LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~-~-~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
+.+++|+.++.+.+..++............+++.+....+... . ..+...++..++.+++++++||+|+|+.+
T Consensus 225 ~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~----- 299 (473)
T PRK10429 225 ALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW----- 299 (473)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH-----
Confidence 4466888888877777766655555555555555443223222 2 55555688889999999999999999776
Q ss_pred HHHHHHHHHHHHHHHH-----hhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhc-------CCchhhHHHHHHHHHHh
Q 014047 287 ITCTHIMMILTFLLYA-----SAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFG-------LKHFGLIYNFILLGNPI 353 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~l 353 (431)
.++.++..++.+.+. ... ...+++..++.|++.+..++..+++++|..+ .+..|..+|.......+
T Consensus 300 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~ 378 (473)
T PRK10429 300 -AGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG 378 (473)
T ss_pred -HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH
Confidence 333333222222211 112 2344555677889999998888999999844 45567789999999999
Q ss_pred HHHHHhhhHHHHHHhhhhc
Q 014047 354 GALLFSGLLAGKLYDAEAT 372 (431)
Q Consensus 354 g~~i~~p~i~g~i~~~~~~ 372 (431)
|..+ ++.+.|.+.+..|-
T Consensus 379 ~~al-~~~i~g~~l~~~Gy 396 (473)
T PRK10429 379 GSAF-AAFFIGVVLGLIGY 396 (473)
T ss_pred HHHH-HHHHHHHHHHHcCC
Confidence 9999 88899999987653
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=117.12 Aligned_cols=177 Identities=15% Similarity=0.117 Sum_probs=129.9
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh-HHHHHHHHHhhhhhhhhHHhHhh-----hcccCcc
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE-LLCLFSLCNFAGRLGSGVLSEHY-----VRSKAIP 282 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~-~~s~~~i~~~ig~~~~G~lsDr~-----grr~~~~ 282 (431)
.+..++++.+.++...+............+|.++++.|.+..+. ..+...... ++++++|+++||+ |||+..
T Consensus 6 l~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~- 83 (491)
T PRK11010 6 LRIFQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGW- 83 (491)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHcccccCCCCchHH-
Confidence 34555666666666666666666677778999999989887665 444444443 6899999999999 887653
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHH
Q 014047 283 RTVWITCTHIMMILTFLLYASAL----SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLF 358 (431)
Q Consensus 283 r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~ 358 (431)
+.++.++.+++...+++.. ...+.+..++.+++.+.......++..|.+|+++|+++.++...+..+|..+
T Consensus 84 ----ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ll- 158 (491)
T PRK11010 84 ----LLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLV- 158 (491)
T ss_pred ----HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH-
Confidence 2444554444444443322 2345556778888888888888999999999999999999999999999999
Q ss_pred hhhHHHHHHhh-hhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 359 SGLLAGKLYDA-EATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 359 ~p~i~g~i~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
++.+.+.+.+. .+ ||.+|++.+++.++..+..++
T Consensus 159 g~~l~~~l~~~~~G-------------Wr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 159 SGGLALWLADRYLG-------------WQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred HHHHHHHHHhcccC-------------HHHHHHHHHHHHHHHHHHHHh
Confidence 77788888873 34 999999988887776555444
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=112.88 Aligned_cols=160 Identities=10% Similarity=0.053 Sum_probs=125.8
Q ss_pred HHhhHHHHHHHhCCCcch-h--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-hhHH
Q 014047 234 VLNNLAQIGVALGVNDTT-E--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-SGTL 309 (431)
Q Consensus 234 ~~~~l~~~~~~~g~s~~~-~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~ 309 (431)
.....|.+.+++|++..+ . +.+.+..+.++..+.+|+++||+|.|+++ .++.+.-.+..++..+.+ ...+
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL------~l~~l~Wsl~t~L~~fa~Sl~~L 118 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVL------VLQALSFVCVWLLLLLGTSVWHM 118 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567777788999887 4 99999999999999999999999999877 555555555555555443 4578
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHH
Q 014047 310 YAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTF 389 (431)
Q Consensus 310 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f 389 (431)
.+..++.|++.|..+ ....++...||+++|+++.|+.+.+..+|.++ ++++++. ....+. ..|+...
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~I-a~~L~ql-l~s~gW----------r~y~~Ln 185 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFL-SSVLGQL-LVTLGW----------ISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHhcCc----------hhHHHHH
Confidence 888999999999999 88999999999999999999999999999999 6768877 444442 1255566
Q ss_pred HHHHHHHHHHHHHHHHHHhhchH
Q 014047 390 LVLAGVCGLGTILSIILTIRIRP 412 (431)
Q Consensus 390 ~~~~~~~~i~~i~~~~~~~~~~~ 412 (431)
++..+...+++++.+++....|.
T Consensus 186 ~Isl~s~~~a~~~a~~LP~~~~s 208 (511)
T TIGR00806 186 IISLVFMTFSVFLALFLKRPKRS 208 (511)
T ss_pred HHHHHHHHHHHHHHHhCCCCchh
Confidence 67777777777887777644443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-15 Score=153.42 Aligned_cols=353 Identities=14% Similarity=0.107 Sum_probs=193.1
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheeccc-CCC----------------------
Q 014047 10 TVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRAC-TPA---------------------- 66 (431)
Q Consensus 10 ~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~-~~~---------------------- 66 (431)
...+...+..-+|..+|..++|.+.+..++|..+.++....+++.++..+.... ...
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~ 125 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI 125 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 357889999999999999999999999999999999999888888777755511 111
Q ss_pred -CCCC-CCCccchHHHHHHHHHHHHHHHHHHhhcccccc---chhHHHHHHHHHHHHH--Hhhhhhcccccccccccccc
Q 014047 67 -SGED-SSEHGHFVFTQAASVFLAIYVVAISITSDYVSL---SDALSYILVAIMVVFM--LSPLAIPVKMTLFPATKKRI 139 (431)
Q Consensus 67 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~ 139 (431)
..|. +++++.............+.+++..+....... ..|+........+.++ +....+|++|+|.-.++|++
T Consensus 126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~ 205 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDE 205 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccc
Confidence 0011 111222111111122222222222221111111 2255444444444322 33348899999987777665
Q ss_pred ccCCCCCcccccCCCCCCCCCCCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHh---
Q 014047 140 RSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKAD--- 216 (431)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 216 (431)
+.++..++..+.+..+++.+. ..++ .+ .....+.++.++++++.
T Consensus 206 ~A~~~l~~~~~~~~~~~~~~~------------~~~~-------------------~~--~~~~~~~~~~~l~~~~~~~~ 252 (451)
T PF00083_consen 206 EAEKVLRKLRGKEIEDEEIEE------------IKAE-------------------KK--ESQESKASWRDLFRNKKYRK 252 (451)
T ss_pred ccccccccccccccccccccc------------cccc-------------------cc--cccccceeeeeccccccccc
Confidence 554433321111000000000 0000 00 00000133455555432
Q ss_pred -HHHHHHHHHHh-hhhHHHHHhhHHHHHHHhCCCcchhHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHH
Q 014047 217 -FWLLWFVYFLG-VGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMM 294 (431)
Q Consensus 217 -~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~s~~~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~ 294 (431)
+........+. ........++.+.+.++.|.+..........+...++.+++.++.||+|||+.+ ..+..++
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~------i~~~~~~ 326 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLL------IIGLLLM 326 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------ccccccc
Confidence 11111122222 122223445566777777776663344455566777888888999999999877 4444443
Q ss_pred HHHHHHHH-----hhhh-----hHHHHHHHHHHHHhh-hhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH
Q 014047 295 ILTFLLYA-----SALS-----GTLYAATVLLGVCYG-VIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 295 ~~~~~~~~-----~~~~-----~~~~~~~~l~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
+++.+.+. ..+. ...++...+..++++ +..+..+.+.+|.||++.|+++.|+......+++.+ ++.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i-~~~~~ 405 (451)
T PF00083_consen 327 AICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFI-IPFLF 405 (451)
T ss_pred cccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 33333332 1111 122222222323333 333555688899999999999999999988898888 77777
Q ss_pred HHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 014047 364 GKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQ 415 (431)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~ 415 (431)
..+.+..+ ....|.+.+++++++.++.+++.+|++.+..
T Consensus 406 ~~~~~~~~-------------~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l 444 (451)
T PF00083_consen 406 PYLFNNLG-------------GWGVFLIFAGVCLIAIIFVYFFLPETKGKTL 444 (451)
T ss_pred cccccccc-------------ccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence 77766654 2345666667777777777777788876554
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-10 Score=117.12 Aligned_cols=156 Identities=12% Similarity=0.036 Sum_probs=113.7
Q ss_pred hhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh--
Q 014047 229 GAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA-- 304 (431)
Q Consensus 229 ~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~-- 304 (431)
+..+.+....|.+.+++|++..+. +.++ .....++.+..|+++||+|+|+++ .++.++..++.++.+..
T Consensus 41 g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vl------lig~ll~~iG~ll~ala~~ 113 (591)
T PTZ00207 41 SFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIF------VLSMTVFCLGTLLFALTFQ 113 (591)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHH------HHHHHHHHHHHHHHHHHhc
Confidence 344556666788888889998765 3333 333345666789999999999877 77777777777666653
Q ss_pred -----hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccc
Q 014047 305 -----LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTC 379 (431)
Q Consensus 305 -----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~ 379 (431)
+.+.+++..++.|+|.+..++.....+.+.|| ++||.+.|+...+..+|+.+++++..+.+.+ +
T Consensus 114 ~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~-------- 182 (591)
T PTZ00207 114 EVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--N-------- 182 (591)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h--------
Confidence 23456777889999988888778888899996 7899999999999999998767755554432 2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 380 IGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 380 ~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
|+..|++.+++.++..++.+.+.
T Consensus 183 -----~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 183 -----TSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhhe
Confidence 77778877777766655555543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-10 Score=114.01 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHH
Q 014047 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~ 293 (431)
.++.+.+.++............+|.+.+++|.+..+. ..+.+.++..++.+..|+++||+|||+.+ .++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l------~~g~~~ 100 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------HHHHHH
Confidence 4556666666656666667778899877889988765 88889999999999999999999999887 666666
Q ss_pred HHHHHHHH---Hhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHH
Q 014047 294 MILTFLLY---ASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLY 367 (431)
Q Consensus 294 ~~~~~~~~---~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~ 367 (431)
..++.+++ ...+ ...+++.+++.|+|.|......+.++.+..+.+.++...++......+|..+ +|.+++.+.
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~-g~~~g~~l~ 177 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 66666543 2222 3466778899999999999998999888765555556788888888899988 786766544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-11 Score=126.40 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=125.8
Q ss_pred HHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-----
Q 014047 233 TVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL----- 305 (431)
Q Consensus 233 ~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~----- 305 (431)
.....++++.++++++..+. +.+.+.++..++.++.|++.||++||+.+ .++.++++++.++++..+
T Consensus 51 ~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i------~~g~ll~~lg~ll~alphf~~~~ 124 (633)
T TIGR00805 51 LVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI------GIGCAIMGLGSFLLSLPHFLSGR 124 (633)
T ss_pred HHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE------EecHHHHHHHHHHHhChHHhcCC
Confidence 34445677778888887765 88899999999999999999999999988 666666666666554321
Q ss_pred ----------------------------------------------h-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCC
Q 014047 306 ----------------------------------------------S-GTLYAATVLLGVCYGVIYSLMVPTASELFGLK 338 (431)
Q Consensus 306 ----------------------------------------------~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 338 (431)
. ..+++++++.|+|.+..++...+++.|.+|++
T Consensus 125 y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~ 204 (633)
T TIGR00805 125 YSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK 204 (633)
T ss_pred ccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcc
Confidence 1 13567889999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhccc---CC------cccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 339 HFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQ---GS------STCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 339 ~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~---~~------~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
+++...|+.+.+..+|..+ |++++|.+.+.+..-. .. ..-....+|+..|++.+++.++..++.+++.
T Consensus 205 ~~~~~~~i~~~~~~iG~~l-G~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 205 NSPLYIGILESIAVFGPAF-GYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred ccHHHHHHHHHHHHhhhHH-HHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999 8989998876542100 00 0001112377788888877777665544433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=113.49 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=114.5
Q ss_pred HHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014047 233 TVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLY 310 (431)
Q Consensus 233 ~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (431)
.+...+|.+.+++|++.... ..+.+.++..++.++.|+++||+|||+.+ .++.++..++.......+...++
T Consensus 18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~l~ 91 (355)
T TIGR00896 18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSV------AAGLLLIAAGILIRSAPGTALLF 91 (355)
T ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHH------HHHHHHHHHHHHHHHhccHHHHH
Confidence 45567899999999998765 88899999999999999999999999876 44444444444443223345667
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHH
Q 014047 311 AATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFL 390 (431)
Q Consensus 311 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~ 390 (431)
+.+++.|++.+...+..+.++.|.++ ++++++.++.+.+..+|..+ ++.+.+.+.+..+ ..||..|.
T Consensus 92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i-~~~~~~~l~~~~~-----------~~w~~~f~ 158 (355)
T TIGR00896 92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAAL-AAAATVPLAQHSG-----------GHWQQALA 158 (355)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh-----------hhHHHHHH
Confidence 77889999998888778888888885 68999999999999999999 7878888876643 12898888
Q ss_pred HHHHHHHHH
Q 014047 391 VLAGVCGLG 399 (431)
Q Consensus 391 ~~~~~~~i~ 399 (431)
+.+++.+++
T Consensus 159 ~~~~~~~~~ 167 (355)
T TIGR00896 159 WWALPALLA 167 (355)
T ss_pred HHHHHHHHH
Confidence 766554443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=128.54 Aligned_cols=181 Identities=18% Similarity=0.176 Sum_probs=123.8
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHH-HHh----CCCcch--h-HHHHHHHHHhhhhhhhhHHhHhhhcccC
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VAL----GVNDTT--E-LLCLFSLCNFAGRLGSGVLSEHYVRSKA 280 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~----g~s~~~--~-~~s~~~i~~~ig~~~~G~lsDr~grr~~ 280 (431)
..++|+++|+.+++..++...........++.+. ..+ +.+... . ..+++.+...+..+++|+++||+|||++
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 4567888888777777766554433333222221 122 222222 2 5667788999999999999999999986
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhh
Q 014047 281 IPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG 360 (431)
Q Consensus 281 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p 360 (431)
+... ..+..+....+.+.+...+.+.+++.+++.|++.+...+...+++.+++++++++.+.|+.+++..+|..+ ||
T Consensus 85 ~~~~--~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~i-gp 161 (1140)
T PRK06814 85 AKIL--KFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILL-GT 161 (1140)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHH-HH
Confidence 5111 11111212222222222345677888899999999999999999999999999999999999999999999 89
Q ss_pred hHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 361 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 361 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
.++|++.+..+ |++.|...+++.+++.++.+.
T Consensus 162 ~l~g~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 193 (1140)
T PRK06814 162 IIGGLATISGN-------------FVILVALLMGIAVLGWLASLF 193 (1140)
T ss_pred HHHHHHHhccc-------------cHHHHHHHHHHHHHHHHHHhh
Confidence 99999998766 998885555555544444333
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=113.76 Aligned_cols=184 Identities=13% Similarity=0.055 Sum_probs=122.0
Q ss_pred HHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhH----hhhcccCcchHHHHHHHHHHH
Q 014047 221 WFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSE----HYVRSKAIPRTVWITCTHIMM 294 (431)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsD----r~grr~~~~r~~~~~~~~~~~ 294 (431)
....+...........+++.|++++|.+.... +.....+...+..|+.|+++| |+|||+.+ +..+.+..
T Consensus 10 ~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~-----il~g~~~~ 84 (477)
T TIGR01301 10 ASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPF-----IAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHH-----HHHHHHHH
Confidence 33333344444556667888899999987665 777888999999999999999 59999877 22233334
Q ss_pred HHHHHHHHhhhh------------------hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCch--hhHHHHHHHHHHhH
Q 014047 295 ILTFLLYASALS------------------GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHF--GLIYNFILLGNPIG 354 (431)
Q Consensus 295 ~~~~~~~~~~~~------------------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~lg 354 (431)
.+++.++....+ ...++...+..++.....++..++++|.+|++++ +.+.++.+...++|
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG 164 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIG 164 (477)
T ss_pred HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHH
Confidence 444444433211 1122233344557777788889999999998865 67899999999999
Q ss_pred HHHHhhhHHHHH--HhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014047 355 ALLFSGLLAGKL--YDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRI 410 (431)
Q Consensus 355 ~~i~~p~i~g~i--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 410 (431)
+.+ ++.+++.. .+..+-......+.-..+++..|++.+++.+++.++.++..+|.
T Consensus 165 ~il-g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 165 NVL-GYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred HHH-HHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 999 77666653 22211110111122334589999999988888888777765554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.3e-10 Score=109.73 Aligned_cols=176 Identities=15% Similarity=0.067 Sum_probs=113.3
Q ss_pred hHhHHHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHH-HHhhhhhhhhHHhHhhhcccCcchHHHHHH
Q 014047 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSL-CNFAGRLGSGVLSEHYVRSKAIPRTVWITC 289 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i-~~~ig~~~~G~lsDr~grr~~~~r~~~~~~ 289 (431)
+.+.|..++..++...........+|.+.+ ++|.+.++. ..+...+ +..++.+.+|+ +||+|||+.+ +..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~-----~~~ 87 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSL-----IVF 87 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHH-----HHH
Confidence 556677777777777776677788888765 569888776 4344444 55566666666 9999998764 122
Q ss_pred HHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCch--hhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 290 THIMMILTFLLYASALSG-TLYAATVLLGVCYGVIYSLMVPTASELFGLKHF--GLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
+.++..++..++...+.. .+++...+.+...+...+....+..+..+++.| +...++.+.+..+|..+ +|.+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~-g~~i~~~l 166 (393)
T PRK15011 88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVI-GPPLAYAL 166 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 233333344334443332 333333334433344556666777776655544 33447788888999999 89899999
Q ss_pred HhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 367 YDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
.++.+ ||..|++.++.+++..+..++..++
T Consensus 167 ~~~~g-------------w~~~f~~~~~~~~~~~~~~~~~~~~ 196 (393)
T PRK15011 167 AMGFS-------------FTVMYLSAAVAFIVCGVMVWLFLPS 196 (393)
T ss_pred HHhcC-------------hHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 98877 9999999888777766655544443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-10 Score=112.18 Aligned_cols=158 Identities=17% Similarity=0.102 Sum_probs=114.2
Q ss_pred HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHH
Q 014047 218 WLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMI 295 (431)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~ 295 (431)
+.+.+.+++.+.....+...+|.+++++|.+..+. ..+...+...++.+++|+++||+||+... +... .++..+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~-~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIA-LRLL-ALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHH-HHHHHHHH
Confidence 44555666666666677888999999999988776 78888999999999999999999875332 1111 11111111
Q ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhccc
Q 014047 296 LTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQ 374 (431)
Q Consensus 296 ~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~ 374 (431)
+ ......+ .+.+++..++.|.+.+...+...++..+. .+++++++|.......+|..+ +|.++|.+.+..+
T Consensus 85 ~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~-g~~l~g~l~~~~g--- 156 (382)
T TIGR00902 85 A--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFII-GSALFGGLIGMFD--- 156 (382)
T ss_pred H--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHH-HHHHHHHHHHHcC---
Confidence 1 1122223 34556667778887777777777776553 477899999999999999999 8889999999887
Q ss_pred CCcccccccccHHHHHHHHHH
Q 014047 375 GSSTCIGAECFRLTFLVLAGV 395 (431)
Q Consensus 375 ~~~~~~~~~~~~~~f~~~~~~ 395 (431)
||..|++..++
T Consensus 157 ----------~~~~f~~~~~~ 167 (382)
T TIGR00902 157 ----------EQNILAILTAG 167 (382)
T ss_pred ----------hhHHHHHHHHH
Confidence 99999887655
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.7e-11 Score=111.73 Aligned_cols=139 Identities=22% Similarity=0.208 Sum_probs=124.9
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTA 331 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~ 331 (431)
++....+.+.+..++.|.+.||+|+|..+ ++++.++....+++++.+. ..+++++.+.|+|.+.......+++
T Consensus 111 LFaskA~~qllvnp~~G~l~~~iGy~ipm------~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglaml 184 (464)
T KOG3764|consen 111 LFASKALVQLLVNPFFGNLIDRIGYKIPM------VAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAML 184 (464)
T ss_pred HHHHHHHHHHHhcccchhhHHHhccccHH------HHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence 78888899999999999999999999877 8899988888888887664 5788899999999999999999999
Q ss_pred HHhhcCCc-hhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014047 332 SELFGLKH-FGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRI 410 (431)
Q Consensus 332 ~~~~~~~~-~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 410 (431)
+|.||.++ ||++.|+...+..+|-.+ +|.++|.+||..| ++.+|.++++++++...+-+++.+++
T Consensus 185 Ad~f~~d~er~~vmGialgfislG~lv-gPpfGGilYe~~G-------------k~aPFlVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 185 ADVFPEDNERGSVMGIALGFISLGVLV-GPPFGGILYEFAG-------------KSAPFLVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred HHHcccchhhhHHHHHHHHHHhcccee-cCCcccchHhhcC-------------CcCcHHHHHHHHHHHHHHHHheeCcc
Confidence 99999876 799999999999999999 8999999999988 89999999999999888877766554
Q ss_pred h
Q 014047 411 R 411 (431)
Q Consensus 411 ~ 411 (431)
+
T Consensus 251 ~ 251 (464)
T KOG3764|consen 251 E 251 (464)
T ss_pred c
Confidence 3
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-09 Score=103.72 Aligned_cols=198 Identities=16% Similarity=0.143 Sum_probs=130.5
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
...+||+.+..+.+..++.............+|.+.. |.++... .......+..++.+++.+|++|+|+|+.+
T Consensus 230 ~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~---- 305 (467)
T COG2211 230 LLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF---- 305 (467)
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH----
Confidence 4577899988888877777666655555566665532 5554443 55555566666699999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhhhhhhhHHHHHHHhh-------cCCchhhHHHHHHHHHHhHH
Q 014047 286 WITCTHIMMILTFLLYASAL---SGTLYAATVLLGVCYGVIYSLMVPTASELF-------GLKHFGLIYNFILLGNPIGA 355 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-------~~~~~g~~~g~~~~~~~lg~ 355 (431)
.++.++.+++...+.+.. ....++..++.++|.+...+..+++++|.. +.+.-|..++......-+|.
T Consensus 306 --~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ 383 (467)
T COG2211 306 --LIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGL 383 (467)
T ss_pred --HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 555665555555544332 234555568889999999999999998754 34446888999999999999
Q ss_pred HHHhhhHHHHHHhhhhcccCC--cccccccccHHHHHHH-HHHHHHHHHHHHHHHhhchHHH
Q 014047 356 LLFSGLLAGKLYDAEATKQGS--STCIGAECFRLTFLVL-AGVCGLGTILSIILTIRIRPVY 414 (431)
Q Consensus 356 ~i~~p~i~g~i~~~~~~~~~~--~~~~~~~~~~~~f~~~-~~~~~i~~i~~~~~~~~~~~~~ 414 (431)
.+ +..+.|++.+..|-..+. +.-..-.+-+..+.+. +++.++++++.. ..+-+++..
T Consensus 384 al-a~~~~g~~L~~~Gyv~~~~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~-~y~L~~~~~ 443 (467)
T COG2211 384 AL-AGFIPGWILGAIGYVPNVSAQSASALFGIRFLFIILPALLLLLAAIIIF-FYKLNEKMH 443 (467)
T ss_pred HH-HHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHHH
Confidence 99 667999998877632221 2222333456666655 334444444444 344443333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.3e-11 Score=110.01 Aligned_cols=108 Identities=24% Similarity=0.280 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhhhhhhHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSG-TLYAATVLLGVCYGVIYSLMVPTA 331 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~~~g~~~~~~~~~~ 331 (431)
+-+.++++..+.++.+|.+|||+|||.++ .++.+..++...+.+...+. .+.+.+++.|+.-|-. ++.-+++
T Consensus 73 lGSsF~ilQ~~sS~~~G~~SD~yGRkpvl------l~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAii 145 (451)
T KOG2615|consen 73 LGSSFSILQFISSPLWGCLSDRYGRKPVL------LACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAII 145 (451)
T ss_pred HhhHHHHHHHHhhhhhhhhhhhhCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHHH
Confidence 88899999999999999999999999887 66666666666666655554 3444488888877765 6778999
Q ss_pred HHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHh
Q 014047 332 SELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYD 368 (431)
Q Consensus 332 ~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~ 368 (431)
+|++++++|+.+.+.+.++..+|-++ ||.++|++..
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfil-GPmIGgyla~ 181 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFIL-GPMIGGYLAQ 181 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhh-cchhhhHHHh
Confidence 99999999999999999999999999 9999999887
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-10 Score=126.05 Aligned_cols=153 Identities=15% Similarity=0.128 Sum_probs=112.2
Q ss_pred HHhhhHhHHHHHHHHHHhhhhHHHHHhhH-HHHHHHhCCCcch----hHHHHHHHHHhhhhhhhhHHhHhhhcccCcchH
Q 014047 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNL-AQIGVALGVNDTT----ELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRT 284 (431)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~s~~~----~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~ 284 (431)
..++++.|+.+++..++.......+...+ +.+..+++.+... ...+++.++..++.+++|+++||+|||+.+
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l--- 80 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI--- 80 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH---
Confidence 46778888888877777655444443333 3344455554332 267788899999999999999999999876
Q ss_pred HHHHHHHHHHHH---HHHHHHh-hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhh
Q 014047 285 VWITCTHIMMIL---TFLLYAS-ALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSG 360 (431)
Q Consensus 285 ~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p 360 (431)
..+.++.++ ...+... .+.+.+++.+++.|++.+...+...++++|.+++++|+++.|+..++..+|..+ ++
T Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~l-g~ 156 (1146)
T PRK08633 81 ---RIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILA-GT 156 (1146)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHH-HH
Confidence 333322222 2122212 233567778899999999999999999999999999999999999999999999 88
Q ss_pred hHHHHHHhh
Q 014047 361 LLAGKLYDA 369 (431)
Q Consensus 361 ~i~g~i~~~ 369 (431)
.+++++.+.
T Consensus 157 ~l~~~l~~~ 165 (1146)
T PRK08633 157 ALFSFLFES 165 (1146)
T ss_pred HHHHHHHHh
Confidence 899988876
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-10 Score=110.11 Aligned_cols=152 Identities=18% Similarity=0.093 Sum_probs=109.5
Q ss_pred hhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-
Q 014047 229 GAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL- 305 (431)
Q Consensus 229 ~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~- 305 (431)
.....+...+|.+++++|.|..+. ..+...++..++.+++|+++||+|||....|.. .+...+. ........+
T Consensus 18 ~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~--~~~~~~~--~~~~~~~~~~ 93 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLL--ALLTLLF--AVAFWFGAHS 93 (382)
T ss_pred HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHH--HHHHHHH--HHHHHHhccc
Confidence 344567788899999999988775 888899999999999999999999953321211 1111111 111122222
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccccccccc
Q 014047 306 SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECF 385 (431)
Q Consensus 306 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~ 385 (431)
.+.+++..++.|++.+...+...+++.+. .++++.+.+.......+|..+ +|.++|.+.++.+ |
T Consensus 94 ~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~i-gp~lgg~l~~~~g-------------~ 157 (382)
T PRK11128 94 FWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVI-GSALTGKLVSWFG-------------E 157 (382)
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHH-HHHHHHHHHHHcC-------------h
Confidence 34556667778888887777777777665 456888889989888999999 8999999999887 9
Q ss_pred HHHHHHHHHHHHHHH
Q 014047 386 RLTFLVLAGVCGLGT 400 (431)
Q Consensus 386 ~~~f~~~~~~~~i~~ 400 (431)
|..|++.++..++..
T Consensus 158 ~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 158 QAILWILTAGVASML 172 (382)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999987776555443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-10 Score=108.75 Aligned_cols=133 Identities=23% Similarity=0.191 Sum_probs=96.4
Q ss_pred HHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHhhhhhhhH
Q 014047 257 FSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSG---------TLYAATVLLGVCYGVIYSLM 327 (431)
Q Consensus 257 ~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~G~~~g~~~~~~ 327 (431)
..++..++.++.|+++||+|||+.+ .++.++..++.++....+.. .+++.+++.|++.+...+..
T Consensus 44 ~~~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 117 (394)
T TIGR00883 44 GFLARPLGAIVFGHFGDRIGRKKTL------VITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGA 117 (394)
T ss_pred HHHHhhhHHHHhhhhhhhhhhHHHH------HHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhcccccccc
Confidence 3345567899999999999999877 56666666666555543321 35677789999999988889
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHH
Q 014047 328 VPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTI 401 (431)
Q Consensus 328 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i 401 (431)
..++.|.+++++|+...++...+..+|..+ ++.+.+.+....+... ....+||+.|++.+++.+++..
T Consensus 118 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~~~~~~~~~~~~~~-----~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 118 ALYLAEYAPPGKRGFYGSFQQVGAPVGLLL-AALTVLLLSYLLGDDA-----LLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHhhhcCCcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHH-----hhccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 7766665543211000 0012499999887766655543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-09 Score=106.01 Aligned_cols=157 Identities=11% Similarity=0.193 Sum_probs=97.1
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh-HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE-LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~-~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
+..++++.++.+....++.............++.+.. |...... +.....++..++.+++++++||+++|+.+ +.
T Consensus 222 ~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~---~~ 298 (460)
T PRK11462 222 RDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIF---WW 298 (460)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH---HH
Confidence 5677888887776655555444444444444444433 4333222 66677888899999999999999988665 11
Q ss_pred HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhc-------CCchhhHHHHHHHHHHhHHHH
Q 014047 287 ITCTHIMMILTFLLYASAL--SGTLYAATVLLGVCYGVIYSLMVPTASELFG-------LKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i 357 (431)
..... ...+...+.... ...+++..++.|++.+...+..+++++|... .+.-|..++.......+|..+
T Consensus 299 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~al 376 (460)
T PRK11462 299 TNALL--AVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAF 376 (460)
T ss_pred HHHHH--HHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 11111 111222211212 2233444566787777777777778877654 444566677777888899999
Q ss_pred HhhhHHHHHHhhhh
Q 014047 358 FSGLLAGKLYDAEA 371 (431)
Q Consensus 358 ~~p~i~g~i~~~~~ 371 (431)
++.+.|.+.+..|
T Consensus 377 -g~~i~g~iL~~~G 389 (460)
T PRK11462 377 -GGALIGWMLAYGG 389 (460)
T ss_pred -HHHHHHHHHHHcC
Confidence 7889998887654
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-11 Score=121.78 Aligned_cols=146 Identities=18% Similarity=0.139 Sum_probs=113.9
Q ss_pred hHHHHHHHhCCC---cchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHH
Q 014047 237 NLAQIGVALGVN---DTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-SGTLY 310 (431)
Q Consensus 237 ~l~~~~~~~g~s---~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 310 (431)
..|.+.++++.+ .... ..+.+.++..++.+++|+++||+|||+.+ .++.++..++.++....+ ...++
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~------~~~~~~~~i~~~~~~~~~~~~~~~ 184 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVL------LLSTLVTAVSGVLTAFSPNYTVFL 184 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHH------HHHHHHHHHHHHHHHHcccHHHHH
Confidence 456666677776 4333 88899999999999999999999999776 555555555555554444 35677
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHH
Q 014047 311 AATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFL 390 (431)
Q Consensus 311 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~ 390 (431)
+.+++.|++.+...+...+++.|.+|+++|+.+.++...+..+|..+ +|.+.+.+. + ||+.|+
T Consensus 185 ~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~---~-------------wr~~~~ 247 (505)
T TIGR00898 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL-LPLVAYFIP---D-------------WRWLQL 247 (505)
T ss_pred HHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHH-HHHHHHHhh---H-------------HHHHHH
Confidence 78899999999999999999999999999999999998888888887 775554432 2 999999
Q ss_pred HHHHHHHHHHHHHHH
Q 014047 391 VLAGVCGLGTILSII 405 (431)
Q Consensus 391 ~~~~~~~i~~i~~~~ 405 (431)
+.++..++..+..++
T Consensus 248 ~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 248 AVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888877776665543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-09 Score=106.72 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=110.8
Q ss_pred hhHHHHHhhHHHHHHHhCCCcchh-HHHHHHHHHhhhhhhhhHHhHhh-----hcccCcchHHHHHHHHHHHHHHHHHHH
Q 014047 229 GAGVTVLNNLAQIGVALGVNDTTE-LLCLFSLCNFAGRLGSGVLSEHY-----VRSKAIPRTVWITCTHIMMILTFLLYA 302 (431)
Q Consensus 229 ~~~~~~~~~l~~~~~~~g~s~~~~-~~s~~~i~~~ig~~~~G~lsDr~-----grr~~~~r~~~~~~~~~~~~~~~~~~~ 302 (431)
.........+|.|+++.|++.++. .+...... .+..+++|+++||+ |||+.. +.++.++.+++...+.
T Consensus 13 ~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~-----l~~~~~~~~l~~~~l~ 86 (402)
T PRK11902 13 LPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGW-----LLLTQVGLAASIAAMA 86 (402)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhH-----HHHHHHHHHHHHHHHH
Confidence 334455667899999999998876 33433333 58889999999999 776543 2444444444444433
Q ss_pred hhh----hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh-hcccCCc
Q 014047 303 SAL----SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE-ATKQGSS 377 (431)
Q Consensus 303 ~~~----~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~-~~~~~~~ 377 (431)
... .+.+++..++.+++.+...+...+++.|.+++++|+++.++...+..+|..+ ++.+.+.+.+.. +
T Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~-g~~l~~~l~~~~~g------ 159 (402)
T PRK11902 87 FCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV-SGGLALWLADRVLG------ 159 (402)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH-HhHHHHHHHhcccC------
Confidence 321 1234444456677777777888999999999999999999999999999998 666888887753 4
Q ss_pred ccccccccHHHHHHHHHHHHHHHHH
Q 014047 378 TCIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 378 ~~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
||..|++.+++.+++.+.
T Consensus 160 -------w~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 160 -------WGNTYLLMAGLMLAGALT 177 (402)
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 999999988877665554
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-10 Score=109.83 Aligned_cols=173 Identities=18% Similarity=0.239 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhHHHHHH-HhC----CCcchh--HHHHHHHHHhhhhhhhhHHhHhh-hcccCcchHHHH
Q 014047 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALG----VNDTTE--LLCLFSLCNFAGRLGSGVLSEHY-VRSKAIPRTVWI 287 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g----~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~-grr~~~~r~~~~ 287 (431)
.+|.+...=++=-...|++-..+-.|+. +.+ ++++.+ +++.+....-+..+++||++||+ |+|+.+
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI------ 95 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI------ 95 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH------
Confidence 3555555555555555666665555554 334 887766 77777777777889999999995 888887
Q ss_pred HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCc--hhhHHHHHHHHHHhHHHHHhhhH
Q 014047 288 TCTHIMMILTFLLYASAL---SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKH--FGLIYNFILLGNPIGALLFSGLL 362 (431)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~i~~p~i 362 (431)
+++.+++.++.+.++..+ ...++++++++++|.|..=+....++.|.+|+++ |-...++.+++.++|+.+ +|++
T Consensus 96 ~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~-~p~i 174 (498)
T COG3104 96 VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLI-APII 174 (498)
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHH-HHHH
Confidence 888999999999887663 4578889999999999998999999999998765 566788888999999999 9999
Q ss_pred HHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 014047 363 AGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTI 408 (431)
Q Consensus 363 ~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 408 (431)
.+++.+.++ |+..|...++-..++++..++.++
T Consensus 175 ~~~~~~~~g-------------~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 175 TGLLAINYG-------------WHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHhhC-------------HHHHHHHHHHHHHHHHHHHHHccc
Confidence 999999987 999999999888888777666543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-07 Score=93.97 Aligned_cols=149 Identities=9% Similarity=0.029 Sum_probs=91.5
Q ss_pred hHHHHHHHHHhhhhhhhhHHhHhhhcc---cCcchHHHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHH
Q 014047 252 ELLCLFSLCNFAGRLGSGVLSEHYVRS---KAIPRTVWITCTHIMMILTFLLYASA----------LSGTLYAATVLLGV 318 (431)
Q Consensus 252 ~~~s~~~i~~~ig~~~~G~lsDr~grr---~~~~r~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~G~ 318 (431)
...++..+.-.+..|+.+++=.|..|| +..|++ ..+++++++++++.+... +..++++..++.++
T Consensus 312 ~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~K--fa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~ 389 (493)
T PRK15462 312 MFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGK--FALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF 389 (493)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 367788887788888888887777443 233333 356666666666554321 12456777788888
Q ss_pred HhhhhhhhHHHHHHHhhcCCchhhHHHHHHHH-HHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHH
Q 014047 319 CYGVIYSLMVPTASELFGLKHFGLIYNFILLG-NPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCG 397 (431)
Q Consensus 319 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 397 (431)
|--...++..+.++++.|++.+|...|+..+. ..+|+.+ +..+.+...+....+. ...-.....|...|...+...+
T Consensus 390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~-~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~ 467 (493)
T PRK15462 390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYL-AGVIADQTSQASFDAS-GAINYSINAYIEVFDQITWGAL 467 (493)
T ss_pred HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccCCcc-ccccchhhhHHHHHHHHHHHHH
Confidence 88888899999999999999999999998764 3566666 4434443321100000 0000011237777877776666
Q ss_pred HH-HHHHH
Q 014047 398 LG-TILSI 404 (431)
Q Consensus 398 i~-~i~~~ 404 (431)
++ .++.+
T Consensus 468 ~~~~~~~~ 475 (493)
T PRK15462 468 ACVGVVLM 475 (493)
T ss_pred HHHHHHHH
Confidence 55 44333
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-09 Score=108.28 Aligned_cols=356 Identities=16% Similarity=0.090 Sum_probs=183.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccC---------------------CCCCC
Q 014047 11 VSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACT---------------------PASGE 69 (431)
Q Consensus 11 ~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~---------------------~~~~~ 69 (431)
-.+.+.+.+.++++++..+.|.+.+..+++..++++..+-+++.+...+-.... ....+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 348999999999999999999999999999888888887777777666433111 00111
Q ss_pred CCCCccchHHHH-HHHHHHHHHHHHHHhhcccccc--chhHHHHHHHHHHHHH--HhhhhhccccccccccccccccCCC
Q 014047 70 DSSEHGHFVFTQ-AASVFLAIYVVAISITSDYVSL--SDALSYILVAIMVVFM--LSPLAIPVKMTLFPATKKRIRSAGS 144 (431)
Q Consensus 70 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (431)
..+.+.|+.... ......++.++...+... .+. ..|+..........++ +....+|++++|.-++++..+.++.
T Consensus 170 iap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~-~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~ 248 (513)
T KOG0254|consen 170 IAPAHIRGTLVSLYQLFITIGILLGYCINYG-TSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRS 248 (513)
T ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHHhhh-hccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHH
Confidence 112223332222 112222333333222221 111 1455444443333332 3344777888876554443222221
Q ss_pred CCcccccCCCCCCCCCCCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHh----hhHhHHHH
Q 014047 145 SDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAF----VKADFWLL 220 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~ 220 (431)
-.......+ + +.+.+.+....+. ..+. .....+..+.+++ +++.++..
T Consensus 249 l~~l~g~~~----------------------~-~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~l~~~~~~~~~~i~~ 300 (513)
T KOG0254|consen 249 LKRLRGLSP----------------------E-DVEVELELLKIKL--LVEA---EVAEGKASWGELFSPKVRKRLIIGL 300 (513)
T ss_pred HHHHhCCCC----------------------c-chHHHHHHHHHHH--HHhh---hcccccccHHHhcCcchHHHHHHHH
Confidence 100000000 0 1111111111000 0000 0000111122222 33334444
Q ss_pred HHHHHHhhhhHHHHHhhHHHHHHHhCCCcc-hhHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHH
Q 014047 221 WFVYFLGVGAGVTVLNNLAQIGVALGVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFL 299 (431)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~-~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~ 299 (431)
.+..+-.........++.+++++..|.+.. .....+..+.+.++..++.++.||+|||+.+ ..+...+.++++
T Consensus 301 ~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ll------l~s~~~m~~~~~ 374 (513)
T KOG0254|consen 301 LLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLL------LFGAAGMSICLV 374 (513)
T ss_pred HHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHhHHHHHHHHH
Confidence 444444444445666788888888887754 4466666777778888889999999999877 444444444444
Q ss_pred HHHhh-----h----h----hHHHHHHHHHHHHhh-hhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 300 LYASA-----L----S----GTLYAATVLLGVCYG-VIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 300 ~~~~~-----~----~----~~~~~~~~l~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
+++.. . . ...+....+.-..+. +..++.+.+.+|.||.+.|+++.++......+.+.+. ....-.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v-~~~~~~ 453 (513)
T KOG0254|consen 375 ILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI-SFFFPF 453 (513)
T ss_pred HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH-HHHHHH
Confidence 43321 0 0 111122222212222 2335556788999999999999999888777766652 222222
Q ss_pred HHhhhhcccCCcccccccccHHHHHHHHHHHHHHHH-HHHHHHhhchHHHH
Q 014047 366 LYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTI-LSIILTIRIRPVYQ 415 (431)
Q Consensus 366 i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i-~~~~~~~~~~~~~~ 415 (431)
+.+..+ ....|...++++.+..+ ..+++.+++|.+..
T Consensus 454 ~~~~~~-------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl 491 (513)
T KOG0254|consen 454 ITEALG-------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTL 491 (513)
T ss_pred HHHhcc-------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence 222211 23456655566666655 56666777765543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=105.26 Aligned_cols=164 Identities=18% Similarity=0.132 Sum_probs=113.0
Q ss_pred HHHhhHHHHHHHhCCCcchh-HHHHHHHHHhhhhhhhhHHhHhh-----hcccCcchHHHHHHHHHHHHHHHHHHHhhhh
Q 014047 233 TVLNNLAQIGVALGVNDTTE-LLCLFSLCNFAGRLGSGVLSEHY-----VRSKAIPRTVWITCTHIMMILTFLLYASALS 306 (431)
Q Consensus 233 ~~~~~l~~~~~~~g~s~~~~-~~s~~~i~~~ig~~~~G~lsDr~-----grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 306 (431)
.+...+|.+.++.|++.++. ..+...+...+ .+++|+++||+ |||+.+ +..+.++.++....+++..+
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~-----l~~~~~~~~~~~~~l~~~~~ 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSW-----LVLTQVLLLSLLLILSFLVP 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHH-----HHHHHHHHHHHHHHHHcCCc
Confidence 45567889999999998876 44433444444 89999999998 666553 23444444444333333321
Q ss_pred ----hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccc
Q 014047 307 ----GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGA 382 (431)
Q Consensus 307 ----~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~ 382 (431)
..+....++.+++.+...+...+++.|.+|+++|+.+.++...+..+|..+ ++.+.+.+.+..+..+ ...
T Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~l~~~~g~~~-----~~~ 153 (356)
T TIGR00901 80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLL-SGSLALVLASPEFANT-----GLI 153 (356)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHH-HHHHHHHHhhhccccc-----ccc
Confidence 223444456667777777888899999999999999999999999999999 7878888877654210 123
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHh
Q 014047 383 ECFRLTFLVLAGVCGLGTILSIILTI 408 (431)
Q Consensus 383 ~~~~~~f~~~~~~~~i~~i~~~~~~~ 408 (431)
.+||..|++.+++.+++.+..++..+
T Consensus 154 ~~wr~~f~i~ai~~l~~~~~~~~~~~ 179 (356)
T TIGR00901 154 TLWGYIFFWTALLILPGLLVTLFLAK 179 (356)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45999999988877776655444333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.8e-10 Score=104.71 Aligned_cols=177 Identities=18% Similarity=0.199 Sum_probs=129.6
Q ss_pred hHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHH
Q 014047 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTH 291 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~ 291 (431)
.+.+|.-++.+..+....+.+....+.+-+++|+|+.+. ++.+..+...+.|+..|++.||+|.|+.. .+.+
T Consensus 13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~------~~s~ 86 (417)
T COG2223 13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWT------ILSM 86 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHH------HHHH
Confidence 455666677766666666666667777778889998876 88888999999999999999999999877 6666
Q ss_pred HHHHHHHHHHHhhh--h--hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHH
Q 014047 292 IMMILTFLLYASAL--S--GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLY 367 (431)
Q Consensus 292 ~~~~~~~~~~~~~~--~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~ 367 (431)
++..+-++..+... + +.+++..++.|++. +.++.....++..||++++|.+.|+.. .+++|..+ ...+.-.+.
T Consensus 87 ~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av-~q~~~P~v~ 163 (417)
T COG2223 87 LLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAV-AQLVAPLVA 163 (417)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHH-HHHHHHHHH
Confidence 66665555554432 2 25666667778754 455777889999999999999999999 88888777 555555555
Q ss_pred hhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 368 DAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
...+. ..|+.+..+..+..++..+..++..+.
T Consensus 164 ~~~g~----------~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 164 VAFGF----------LAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHhh----------HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55441 017888777777777777776665443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=110.28 Aligned_cols=156 Identities=11% Similarity=0.038 Sum_probs=104.2
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHH-HHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLA-QIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV 285 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~ 285 (431)
++.+++|..|...+..++.+.........+- ...+.+|+++... ...+..++..+|..+.+++.+|++.|+.+
T Consensus 246 ~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l---- 321 (468)
T TIGR00788 246 RGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLF---- 321 (468)
T ss_pred HHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHH----
Confidence 5567778877654444431111101110000 1113458887765 66667788888888888888888777555
Q ss_pred HHHHHHHHHHHHHHHHHh-----------hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhH
Q 014047 286 WITCTHIMMILTFLLYAS-----------ALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIG 354 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg 354 (431)
.++.++.+++.+.... ......+...++.+++.+..+.+...++++..|++..|+.+++.+...++|
T Consensus 322 --~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg 399 (468)
T TIGR00788 322 --GVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLG 399 (468)
T ss_pred --HHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHH
Confidence 5555555444422210 111233444578888999888888999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHhhhh
Q 014047 355 ALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 355 ~~i~~p~i~g~i~~~~~ 371 (431)
..+ ++.++|.+.+..|
T Consensus 400 ~~v-~~~~gg~l~~~~g 415 (468)
T TIGR00788 400 SSV-SGFLGVLLMETIG 415 (468)
T ss_pred HHH-HHHHHHHHHHHcC
Confidence 999 7889999998877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-08 Score=97.85 Aligned_cols=180 Identities=18% Similarity=0.106 Sum_probs=124.1
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHH-Hh-CCCcc-------h-----hHHHHHHHHHhhhhhhhhHHhHhhhcccC
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGV-AL-GVNDT-------T-----ELLCLFSLCNFAGRLGSGVLSEHYVRSKA 280 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-g~s~~-------~-----~~~s~~~i~~~ig~~~~G~lsDr~grr~~ 280 (431)
+.+|.+.+..++.+.+.+.+..+...+.. +. +.++. . .....+++.+.+.+++--++.+|+|+|+.
T Consensus 258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~ 337 (477)
T TIGR01301 258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR 337 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 57899999999999888877777766654 33 32221 0 14444455555666677777888875433
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhh----------------------hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC-
Q 014047 281 IPRTVWITCTHIMMILTFLLYASAL----------------------SGTLYAATVLLGVCYGVIYSLMVPTASELFGL- 337 (431)
Q Consensus 281 ~~r~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~- 337 (431)
. + .++.++.++++....+.+ ....++...+.|+.++..+++-.+++++..+.
T Consensus 338 ~---~--~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~ 412 (477)
T TIGR01301 338 L---W--GIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL 412 (477)
T ss_pred H---H--HHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence 2 2 344444444433332111 13456667888999999999999999999884
Q ss_pred -CchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhch
Q 014047 338 -KHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIR 411 (431)
Q Consensus 338 -~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 411 (431)
+..|...|+.|.+..+.+.+ ..+..|.+.+..++ .-.+++.+.++..+++.+..+++.++.+
T Consensus 413 ~~~~G~~mgilN~~I~lpQii-~sl~~g~~~~~~g~-----------~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 413 GAGQGLSMGVLNLAIVIPQII-VSLGSGPWDQLFGG-----------GNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred CCCCcchhhHHHHHHHHHHHH-HHHHHHHHHHHcCC-----------CCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45699999999999999999 66677776666653 1566888889999999888887766554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=110.79 Aligned_cols=132 Identities=19% Similarity=0.147 Sum_probs=109.5
Q ss_pred hHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHH
Q 014047 252 ELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPT 330 (431)
Q Consensus 252 ~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~ 330 (431)
.+.+...++..+|.+++|+++|++|||+.+ .++.++..++.++.+...+ ..+++++++.|+|.|+...+.+.+
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l------~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTL------LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhh
Confidence 489999999999999999999999999877 7777777777777766544 578899999999999999999999
Q ss_pred HHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHH
Q 014047 331 ASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 331 ~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
++|+.|++.||...+.......+|..+ + .+.+....+.. .+||..+.+..+.+++-.+.
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~-~-~~~~~~~~~~~-----------~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILL-G-YCINYGTSKVY-----------AGWRIPLGLALIPAVILALG 225 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHH-H-HHHhhhhccCC-----------ccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888877 5 46665554430 12998888887777776666
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-09 Score=101.68 Aligned_cols=180 Identities=14% Similarity=0.028 Sum_probs=118.7
Q ss_pred HHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh----------HHHHHHH-HHhhhhhhhhHHhHhhhcccCcchHHHHH
Q 014047 220 LWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE----------LLCLFSL-CNFAGRLGSGVLSEHYVRSKAIPRTVWIT 288 (431)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~----------~~s~~~i-~~~ig~~~~G~lsDr~grr~~~~r~~~~~ 288 (431)
.....|+...+.+....+...++++.|+.+... ...+..+ +...|..+..+++|++|||+.. .
T Consensus 309 t~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq------~ 382 (538)
T KOG0252|consen 309 TAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQ------L 382 (538)
T ss_pred HHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHH------H
Confidence 334444455555666667788888887764421 2233333 3344888889999999999665 7
Q ss_pred HHHHHHHHHHHHHHhhhh-----hHHHHHHHHHH-HHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhH
Q 014047 289 CTHIMMILTFLLYASALS-----GTLYAATVLLG-VCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLL 362 (431)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G-~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i 362 (431)
.++.++.+.++.++..-+ ....+...+.. ++.-+..+....+.+|.||.+.||+.+|+....+-+|+++ +...
T Consensus 383 ~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAiv-g~~~ 461 (538)
T KOG0252|consen 383 MGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIV-GAFG 461 (538)
T ss_pred hhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHH-HHHH
Confidence 777777777666654322 12222222222 2233334455567799999999999999999999999999 7777
Q ss_pred HHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 014047 363 AGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQ 415 (431)
Q Consensus 363 ~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~ 415 (431)
++++.++.-. ...+.+.+|++.+++++++.++.+++. +++++..
T Consensus 462 F~~~t~~~yp--------~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~l 505 (538)
T KOG0252|consen 462 FLYLTDHNYP--------PNIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSL 505 (538)
T ss_pred hhHhhhccCC--------ccccchHHHHHHHHHHHHhHheeEEee-cccccCH
Confidence 7777763200 012389999999999999988887766 6655443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.1e-09 Score=109.79 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=59.7
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHH-HHhhhhhhhhHHhHhhhcc
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSL-CNFAGRLGSGVLSEHYVRS 278 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i-~~~ig~~~~G~lsDr~grr 278 (431)
+++++|+|.+|...+..++.....+.+..++|.|+++ +|+++..+ +..+..+ +.++|.+++|+++||++.+
T Consensus 323 ~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 323 IKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 4678999999999999999998989999999999986 59887766 4444554 5689999999999999854
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.2e-10 Score=113.52 Aligned_cols=127 Identities=21% Similarity=0.164 Sum_probs=108.3
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTA 331 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~ 331 (431)
..+++.+|..+|.+++|+++||+|||+++ .+++++..++.+..++..+ ..+++.+++.|++.++.......++
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~------~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~ 196 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVL------LVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV 196 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHHHH------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence 88889999999999999999999999887 7777777777666666554 5678888999999999999999999
Q ss_pred HHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHH
Q 014047 332 SELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 332 ~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
+|++++++|+.+..+ ......++.+ ++.+.+++.. + ||+.+++..+..++.+++
T Consensus 197 ~E~~~~~~R~~~~~~-~~~~~~~~~~-~~~~~a~~~~--~-------------Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 197 AEIVSPKQRGLALTL-GGFFFVGGLM-LPAGAAYITR--D-------------WRWLFWIISIPSGLFLLL 250 (521)
T ss_pred eeecCcchhhHHHHH-HHHHHHHHHH-HHHHHHHHHh--h-------------HHHHHHHHHHHHHHHHHH
Confidence 999999999999999 7777777777 6778887776 3 999999988888877666
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-08 Score=101.15 Aligned_cols=322 Identities=12% Similarity=0.053 Sum_probs=172.0
Q ss_pred CCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCC--------------------
Q 014047 7 SRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPA-------------------- 66 (431)
Q Consensus 7 ~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~-------------------- 66 (431)
.......+..+++-+|..+||.++|.+-+..++|.+++++....++.-++..+.......
T Consensus 115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHh
Confidence 355667788899999999999999999988999999999999888887666544332211
Q ss_pred --CCCCCCCccchHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHH--HHhhhhhccccccccccccccccC
Q 014047 67 --SGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVF--MLSPLAIPVKMTLFPATKKRIRSA 142 (431)
Q Consensus 67 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~ 142 (431)
.+-..++++.....+........+.......... .+|++.......+.+ ++..+..+++++|+..+++.++..
T Consensus 195 ~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~---~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~ 271 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYIT---RDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAI 271 (521)
T ss_pred hheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHH
Confidence 0001112222222222222222222222222111 134443333333322 223345558888876665543322
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHH
Q 014047 143 GSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWF 222 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (431)
+...+..+.+. .+. +.+++.+... ... .+.....++...+.++++.+++....+
T Consensus 272 ~~l~~~a~~n~----~~~-----------------~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~l~~~~~l~~~~~ 325 (521)
T KOG0255|consen 272 KILKKIAKLNG----RKL-----------------SVKELLRLEL-LLR----PLKLLFTEPKISFLDLFRTPRLRYRTL 325 (521)
T ss_pred HHHHHHHhhcC----CCC-----------------CcHHHHHHHH-Hhh----HhhhhccCCCCchhhhhcCHHHHHHHH
Confidence 21110000000 000 0000000000 000 000011112234678888875444444
Q ss_pred HHHHhhhhHHHHHhhHHHHHHHhCCCcchhHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 014047 223 VYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYA 302 (431)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~ 302 (431)
...+.+.......+-++.....+|.+.... ..+.......+....+.+.|++|||... .....+..++++...
T Consensus 326 ~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~-~~~~~~~~~p~~~~~~~~~~~~gR~~~~------~~~~~~~~~~~~~~~ 398 (521)
T KOG0255|consen 326 YLLFIWFVFSLVYYGLSLNVSGLGGNIYLN-FTLSGLVELPAYFRNGLLLPEFGRRPPL------FLSLFLAGIGLLLFG 398 (521)
T ss_pred HHHHHHHHHhHHHHhhhhhhhhcCchHHHH-HHHHHHHHhhHHHHHHHHHHHhCcHHHH------HHHHHHHHHHHHHHH
Confidence 433333222223333444444445443322 2222224455556668999999998665 666766666666655
Q ss_pred hhhh--h--HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 303 SALS--G--TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 303 ~~~~--~--~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
.... . ...+...+..++.+..+.....+..|.+|+..|+.+.+.......+|+++ +|.+.-.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~-ap~~~~~ 464 (521)
T KOG0255|consen 399 WLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSIL-APLFPLL 464 (521)
T ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4332 2 23444455556666667777899999999999999999999999999999 7855543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-10 Score=112.12 Aligned_cols=136 Identities=16% Similarity=0.214 Sum_probs=116.2
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhhhhhhhHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL---SGTLYAATVLLGVCYGVIYSLMVP 329 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~~~g~~~~~~~~ 329 (431)
+.+.+..|..++.+.+|++.||+|.|+++ ..+.++.+++.++..... .+.+++.+++.|++.|..++....
T Consensus 78 i~ss~~~G~i~~~iP~g~l~~k~G~r~v~------~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~ 151 (466)
T KOG2532|consen 78 IFSSFFWGYILGQIPGGYLADKFGARRVF------FISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGS 151 (466)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHcCchHHH------HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhc
Confidence 89999999999999999999999999887 666666666666554332 245688899999999999999999
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhh-hhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 014047 330 TASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDA-EATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTI 408 (431)
Q Consensus 330 ~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 408 (431)
+.....|+++|++..++...+.++|.++..| +.|++-+. .| |+.+||+.+++.++-.++.+++..
T Consensus 152 i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp-~sg~lc~s~~G-------------W~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 152 ILAKWAPPNERSTFIAILTAGSQLGTIITMP-VSGLLCESSLG-------------WPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred eeeeECCHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHhccCCC-------------CchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999544 99999888 55 999999999998888777666554
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.5e-08 Score=91.84 Aligned_cols=187 Identities=18% Similarity=0.154 Sum_probs=126.9
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHh-hhcccCcch
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEH-YVRSKAIPR 283 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr-~grr~~~~r 283 (431)
+++...+|+....+...++.....++-...+-+|..+ +|++..+. +......+..+|-.+.|++..| .++++..
T Consensus 201 ~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a-- 278 (403)
T PF03209_consen 201 WRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTA-- 278 (403)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH--
Confidence 3555666666555555555555555555566666655 49987665 8888899999999999998874 3333222
Q ss_pred HHHHHHHHHHHHHHHHHHH---h-hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHh
Q 014047 284 TVWITCTHIMMILTFLLYA---S-ALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFS 359 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~ 359 (431)
..+.....+++.++. . .+.+.+....+++|++.|.+....-+.+.++..+++.|...|....++.++..+ +
T Consensus 279 ----~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Gl-g 353 (403)
T PF03209_consen 279 ----ALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGL-G 353 (403)
T ss_pred ----HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHH-H
Confidence 223333333332222 1 224567777899999999998888899999999999999999999999999888 7
Q ss_pred hhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHH
Q 014047 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSI 404 (431)
Q Consensus 360 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 404 (431)
..++|.+.|-...-.+. .-..+|..+|.+-+++.++++++..
T Consensus 354 ~~~GG~~~D~~~~~~~~---~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 354 TFLGGALRDLVRALFGN---SPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHhccC---CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 77889888864321100 0123588888887777777665543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-08 Score=100.92 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=100.8
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh---h-hhhHHHHHHHHHHHHhhhhhhhHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS---A-LSGTLYAATVLLGVCYGVIYSLMV 328 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~G~~~g~~~~~~~ 328 (431)
.++.+.+|.++|.++.|+++||+|||..+ .+..++..++.++... . ....+++++++.|+..|...+..+
T Consensus 65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l------~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~p 138 (485)
T KOG0569|consen 65 IVSIFFIGGMIGSFSSGLLADRFGRKNAL------LLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVP 138 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 89999999999999999999999999665 3333333333322222 2 235788999999999999999999
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 329 PTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 329 ~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
.++.|..|.+.||....+..++..+|..++.....-.+.... +.|.+.+.+..+.+++.+++..++
T Consensus 139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~------------~~W~~l~~~~~i~~~~~l~~l~~~ 204 (485)
T KOG0569|consen 139 MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTE------------DLWPYLLAFPLIPALLQLALLPFL 204 (485)
T ss_pred HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCC------------cchHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999888888888888873222222333322 238888888777777776665553
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-08 Score=96.72 Aligned_cols=170 Identities=15% Similarity=0.011 Sum_probs=107.6
Q ss_pred HHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh-H---HHHHHHHHhhhhhhh-hHHhHhhhcccCcchHHHHHHHHHH
Q 014047 219 LLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE-L---LCLFSLCNFAGRLGS-GVLSEHYVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~-~---~s~~~i~~~ig~~~~-G~lsDr~grr~~~~r~~~~~~~~~~ 293 (431)
.+...++............+|.++++.|.+.++. . ..+..+...+..|++ ++.+||+|||+.. ++.. .++
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~----i~~~-~~~ 79 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSW----VLPM-QCL 79 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhH----HHHH-HHH
Confidence 3344444444454566788999999999998876 3 355577777777777 4478888887764 1111 111
Q ss_pred HHHHHHHHH---hh-h-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHh
Q 014047 294 MILTFLLYA---SA-L-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYD 368 (431)
Q Consensus 294 ~~~~~~~~~---~~-~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~ 368 (431)
.......+. .. . ...++....+.+++.........++..|..+.+.++...+....+..+|..+ ++...+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~-g~~~~~~l~~ 158 (390)
T TIGR02718 80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFG-GGAGTLVLFG 158 (390)
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 111111111 11 1 1122332333344444555566667777777777777777777777888888 6778888888
Q ss_pred hhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 369 AEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
..+ ||..|++.+++.++..+..++..
T Consensus 159 ~~g-------------w~~~f~~~a~l~~~~~~~~~~~~ 184 (390)
T TIGR02718 159 KFG-------------QRPAFLLVACVPLASLVCVLWLK 184 (390)
T ss_pred HhC-------------HHHHHHHHHHHHHHHHHHHHHcC
Confidence 887 99999999988877666654443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=101.14 Aligned_cols=166 Identities=15% Similarity=0.111 Sum_probs=107.6
Q ss_pred hHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhh----hcccCcchHHHHHHHHHHHHHHHHHHH
Q 014047 230 AGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHY----VRSKAIPRTVWITCTHIMMILTFLLYA 302 (431)
Q Consensus 230 ~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~----grr~~~~r~~~~~~~~~~~~~~~~~~~ 302 (431)
....+..+++.+++ ++|.++... +.++..+..++..|+.|+++||. |||+.+ +..+....+++.+++.
T Consensus 14 ~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~-----i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 14 IFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPW-----LLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchh-----HHHhHHHHHHHHHHHH
Confidence 33445555666665 569988776 88888999999999999999985 554443 2344444444444433
Q ss_pred hhhh-------hHHHHHHHHHHHHhhhhhhhHHHHHHHhh-cCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhccc
Q 014047 303 SALS-------GTLYAATVLLGVCYGVIYSLMVPTASELF-GLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQ 374 (431)
Q Consensus 303 ~~~~-------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~ 374 (431)
..+. ..+++..++.+++++....+..++.+|+. ++++|++..+....+..+|..+ ++.+.+.+....+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l-~~~~~~~l~~~~~~~- 166 (437)
T TIGR00792 89 TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLL-VAVIVLPLVSYFGGG- 166 (437)
T ss_pred hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCC-
Confidence 3221 12344446667777777677778888887 4578999999988888888877 555666555433210
Q ss_pred CCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 375 GSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 375 ~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
....+|++.+.+.+++.++..++.++..
T Consensus 167 -----~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 194 (437)
T TIGR00792 167 -----DDKFGWFMFALVLALIGVVSLIICFFGT 194 (437)
T ss_pred -----cccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0113499999888887777665544433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-08 Score=95.10 Aligned_cols=99 Identities=24% Similarity=0.212 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh----h----hHHHHHHHHHHHHhhhhh
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL----S----GTLYAATVLLGVCYGVIY 324 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~l~G~~~g~~~ 324 (431)
+.....+++.+|+++.|++.||+|||+++ ...++++.++.++..... + .++.+.+++.|+|.|+=+
T Consensus 89 Vn~~A~vGti~GQl~FG~lgD~~GRK~vY------G~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY 162 (538)
T KOG0252|consen 89 VNAAALVGTIFGQLFFGWLGDKFGRKKVY------GKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY 162 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhh------hHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence 77788899999999999999999999998 555555555554433321 2 366778899999999999
Q ss_pred hhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 325 SLMVPTASELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 325 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
|+..++++|..-.+.||.-.+.+...+..|...
T Consensus 163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred cchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence 999999999988888999888877777666655
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=102.25 Aligned_cols=170 Identities=18% Similarity=0.200 Sum_probs=131.0
Q ss_pred HHHHHHHHHhhhhHHHHH----hhHHHHHHHhCCCcch--hHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHH
Q 014047 218 WLLWFVYFLGVGAGVTVL----NNLAQIGVALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTH 291 (431)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~s~~~--~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~ 291 (431)
|.+.++.++..+..+++. ...+.+.++++.+..+ ++.++......+..|+.+.+.||+|.|.+. +++.
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~------i~G~ 118 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVM------IAGG 118 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHH------HHHH
Confidence 444444444444433333 3455666777766553 388888888888899999999999999887 8888
Q ss_pred HHHHHHHHHHHhhhhh-HH-HHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhh
Q 014047 292 IMMILTFLLYASALSG-TL-YAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDA 369 (431)
Q Consensus 292 ~~~~~~~~~~~~~~~~-~~-~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~ 369 (431)
++..+++++..+.++. .+ +...++.|+|.|..+.+...++...| .++|+.+.|+...+..+|.+++ |.+..++.+.
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~-~~l~~~l~~~ 196 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVF-PPLLKYLLSK 196 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeH-HHHHHHHHHH
Confidence 8888898887776653 33 44458889999999988888888777 5889999999999999999996 5589999999
Q ss_pred hhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 014047 370 EATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTI 408 (431)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 408 (431)
.| ||+++++.+.+.+-.++....+++
T Consensus 197 ~G-------------~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 197 YG-------------WRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hC-------------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88 999999998888777666666544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.6e-09 Score=100.54 Aligned_cols=163 Identities=13% Similarity=-0.039 Sum_probs=96.3
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHH---Hh-CCCcch--hHHHHHHHHHhhhhhhhhHHhHhhhcccCc-
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV---AL-GVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVRSKAI- 281 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~-g~s~~~--~~~s~~~i~~~ig~~~~G~lsDr~grr~~~- 281 (431)
+.+.|++.+....+.+....+..-.+..|.|.+.+ ++ |.+... .+..+...+..+|.+.+|.++||+-|+..-
T Consensus 238 ~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~ 317 (493)
T KOG1330|consen 238 KVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNS 317 (493)
T ss_pred HHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccc
Confidence 44455566555555555554444455566665543 22 544433 378888899999999999999997653211
Q ss_pred chHH----HHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHhhh-hhhhHHHHHHHhhcCCchhhHHHHHHHHHHhH
Q 014047 282 PRTV----WITCTHIMMILTFLLYASALSG--TLYAATVLLGVCYGV-IYSLMVPTASELFGLKHFGLIYNFILLGNPIG 354 (431)
Q Consensus 282 ~r~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg 354 (431)
.|.. ....+..+.+..+.+....... ...+.++++|..... .++++.-+..+.+|++.|.+++++......+.
T Consensus 318 ~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~f 397 (493)
T KOG1330|consen 318 GTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIF 397 (493)
T ss_pred cchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHh
Confidence 1111 1111122222222222222222 233334444443322 34666677789999999999999999877776
Q ss_pred HHHHhhhHHHHHHhhhh
Q 014047 355 ALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 355 ~~i~~p~i~g~i~~~~~ 371 (431)
+-..+|.+.|.+.|+.-
T Consensus 398 gd~~~p~ivGilsd~l~ 414 (493)
T KOG1330|consen 398 GDAASPYIVGILSDKLR 414 (493)
T ss_pred ccCCCcceehhHHHHhh
Confidence 66658889999998864
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-08 Score=93.87 Aligned_cols=171 Identities=18% Similarity=0.305 Sum_probs=104.3
Q ss_pred hhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHH
Q 014047 212 FVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWIT 288 (431)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~ 288 (431)
+|++.+|.....+++.......+.+..+.++++ .|++.++. +.+..++...+.+|+.|.++||+|.||.. ++.+
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~L---l~~i 80 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHL---LWFI 80 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHH---HHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHH---HHHH
Confidence 467889988888888777777788888999986 69998876 88999999999999999999999988764 2222
Q ss_pred HHHHHHHHHHHHHHhhh--hhHHHHHHHHHHH----HhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhH
Q 014047 289 CTHIMMILTFLLYASAL--SGTLYAATVLLGV----CYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLL 362 (431)
Q Consensus 289 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~----~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i 362 (431)
....+....++.....+ ....+++.++.|+ ++....++.-+++.+. . ++.+.-+|-.-+.+.+|-.+ +..+
T Consensus 81 ~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~-s-r~~~feYG~~R~wGSig~ai-~s~~ 157 (412)
T PF01306_consen 81 AILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV-S-RRNGFEYGRARMWGSIGFAI-ASLL 157 (412)
T ss_dssp HHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH-H-HHHSS-HHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH-H-HHhcCCcchHHHHhhHHHHH-HHHH
Confidence 22222112211111111 1122333333333 3333344444444332 2 34555677777788888888 6779
Q ss_pred HHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHH
Q 014047 363 AGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 363 ~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
.|.+++.. -+..|++..++.++..++
T Consensus 158 ~G~L~~i~--------------p~~~fwi~s~~~~il~ll 183 (412)
T PF01306_consen 158 AGILFNIN--------------PNIIFWIASAAAIILLLL 183 (412)
T ss_dssp HHHHHHHH--------------HHHHHHHHHHHHHHHHHH
T ss_pred hheeeeeC--------------ccHHHHHHHHHHHHHHHH
Confidence 99988754 346777665554444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-07 Score=87.37 Aligned_cols=166 Identities=18% Similarity=0.149 Sum_probs=121.4
Q ss_pred HHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh-h--hh
Q 014047 233 TVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA-L--SG 307 (431)
Q Consensus 233 ~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~-~--~~ 307 (431)
.....+|++.+.++.+..++ +...+..+..++.+..|++.+|+|+|+.+ .+++.++++++.++... + .+
T Consensus 31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi------~lgL~l~avg~~lF~pAa~~~~y 104 (422)
T COG0738 31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGI------VLGLLLYAVGAALFWPAASSKSY 104 (422)
T ss_pred cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHH------HHHHHHHHHHHHHHhhhhhhhhH
Confidence 34446677777778886665 77788889999999999999999999888 88888888888877422 1 23
Q ss_pred -HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCC----ccc--c
Q 014047 308 -TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGS----STC--I 380 (431)
Q Consensus 308 -~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~----~~~--~ 380 (431)
.++.+.++.|.|.|..-+..+.++..+.+++.-..-.++......+|+.+ +|.+++++..+.-....+ ..- .
T Consensus 105 ~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~-gp~~g~~lils~~~~~~~~~~~~~~~~~ 183 (422)
T COG0738 105 GFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAIL-GPLLGSSLILSGVALTMSAAQILAIKGA 183 (422)
T ss_pred HHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHH-HHHHHHHHHHhhhhhccCHHHHHHHHHH
Confidence 45666688899999999999999999998877777888999999999999 899999888741000000 000 0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHH
Q 014047 381 GAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 381 ~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
....++..+..++...++..+....
T Consensus 184 ~~~~v~~pYl~~~~~lvll~v~~~~ 208 (422)
T COG0738 184 DASSVQFPYLILAGLLVLLAVLILL 208 (422)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 0112777888777766665555444
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.5e-07 Score=85.08 Aligned_cols=155 Identities=19% Similarity=0.138 Sum_probs=127.0
Q ss_pred HHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014047 231 GVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGT 308 (431)
Q Consensus 231 ~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (431)
...+-..++.+-++.|.|.+.+ +.+++.++..+.+++..+|..|+|.++.+ ..++++.+++.++=.......
T Consensus 28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l------~~~Llli~~G~~iR~~~~~~~ 101 (395)
T COG2807 28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSL------FLALLLIAAGILIRSLGGLPL 101 (395)
T ss_pred hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHH------HHHHHHHHHHHHHHhcccHHH
Confidence 3455667788888889998776 88889999999999999999999998776 777777777776544444567
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHH
Q 014047 309 LYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLT 388 (431)
Q Consensus 309 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~ 388 (431)
++....+.|.|.+......|+.+.+.|| ++.+..+|++.+...+|+.+ ++.+.-.+.++.+. |+..
T Consensus 102 L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaL-aa~lavpla~~~~g------------W~~a 167 (395)
T COG2807 102 LFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAAL-AAALAVPLAQHSGG------------WRGA 167 (395)
T ss_pred HHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHH-HhhhhhHHHHhhcc------------HHHH
Confidence 7888899999999999999999999996 77899999999999998888 67677777776633 9999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014047 389 FLVLAGVCGLGTILSII 405 (431)
Q Consensus 389 f~~~~~~~~i~~i~~~~ 405 (431)
..+-+..+++++++.+-
T Consensus 168 L~~WAl~allAl~~WlP 184 (395)
T COG2807 168 LGFWALLALLALLIWLP 184 (395)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99888888887766443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=89.44 Aligned_cols=132 Identities=12% Similarity=0.160 Sum_probs=87.8
Q ss_pred HHhhHHHHH-HHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh-hhhHH
Q 014047 234 VLNNLAQIG-VALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA-LSGTL 309 (431)
Q Consensus 234 ~~~~l~~~~-~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~ 309 (431)
+.+..+.+. +.+|+++.+. +.+..++.+.+......+..||...- . ...+...+.++...++++... .+..+
T Consensus 280 ~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~-~---~a~l~~~l~~~vP~~llls~~~~~~~l 355 (451)
T KOG2615|consen 280 LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN-I---KAVLLFSLLLIVPAFLLLSLARTPVVL 355 (451)
T ss_pred HHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccc-h---hhHHHHHHHHHHHHHHHHhccccchhh
Confidence 333344332 4568887765 66666777776666666766665411 0 012244444444444444433 24566
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 310 YAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 310 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
+++..+..+......+-...++....|.++||++.|+......++-++ ||++.|.+....
T Consensus 356 ~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRai-GPlv~g~i~~Ws 415 (451)
T KOG2615|consen 356 YLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAI-GPLVSGVIFSWS 415 (451)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHh-hhhhhheeEEEe
Confidence 777777777777776777788888889999999999999999999999 898888776543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.9e-08 Score=95.94 Aligned_cols=143 Identities=20% Similarity=0.265 Sum_probs=108.6
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTAS 332 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 332 (431)
..+++.++.++|.+.+|.|.||+.-.+.+ ...+.+....+++-....+.+.+++.+++.|+.-+..++....++.
T Consensus 86 ~~t~F~v~Yii~~~p~~~L~~r~~ls~~l-----~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg 160 (495)
T KOG2533|consen 86 LDTVFYVGYIIGQFPSGLLGDRFPLSKGL-----SVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILG 160 (495)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCChHHHH-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 89999999999999999999999844333 2222222222222222334467788899999999999999999999
Q ss_pred HhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 014047 333 ELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTI 408 (431)
Q Consensus 333 ~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 408 (431)
..|+++++|...|+.+....+|+++ |.++...++...+. .+..+||+.|++.++++++..++.++..+
T Consensus 161 ~wy~~~e~g~r~~~~~a~~~~g~i~-ggliA~g~~~~~~~-------~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 161 NWYGKSERGLRMGIWYASASLGNIF-GGLIAYGVFKLNGS-------GGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred hhcChhhhhhhHHHHHHhcchhhHH-HHHHHHHhhhhcCC-------CCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 9999999999999999999999999 67777776553332 12356999999999888887776655443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=90.94 Aligned_cols=195 Identities=16% Similarity=0.152 Sum_probs=123.4
Q ss_pred CCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcch--hHHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~--~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
.+.++++++++|.++.+.+....+..+...+.+-..+...|++... .......++.++|+.+.|.+.||...-+..
T Consensus 257 ~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~-- 334 (480)
T KOG2563|consen 257 KSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLT-- 334 (480)
T ss_pred HHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHH--
Confidence 3568899999999998888777666655555554444444777433 377777888999999999999998654433
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhh----hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHH
Q 014047 284 TVWITCTHIMMILT-FLLYASAL----SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLF 358 (431)
Q Consensus 284 ~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~ 358 (431)
. .+......++ +.+..... ...++....+.|++.-+..++..-+..|..-|..-|+..|+.++.+++-+.+
T Consensus 335 -~--~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~- 410 (480)
T KOG2563|consen 335 -T--LVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVI- 410 (480)
T ss_pred -H--HHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHH-
Confidence 1 1112222222 22211111 2355666778888888888888888788777788888999999888877766
Q ss_pred hhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 014047 359 SGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQ 415 (431)
Q Consensus 359 ~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~ 415 (431)
-..+.+...+..+.. ..+...-+.+...+++++++..+++...+|.+.
T Consensus 411 ~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~ 458 (480)
T KOG2563|consen 411 LVFIMGILAEDLGPP---------GNTFPANIFLTVSALLGAILVAFFRPDYRRLRA 458 (480)
T ss_pred HHHHHHHHhhccCCC---------CCCccchhHhHHHHHHHHHHHhhhhhhHHhHhh
Confidence 356666666554421 112223344445555556666665555554443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=92.17 Aligned_cols=177 Identities=18% Similarity=0.118 Sum_probs=128.1
Q ss_pred HhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHH
Q 014047 211 AFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWIT 288 (431)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~ 288 (431)
++.+++..++++...++......+.+.+=.++++.|...... .......+-.+.-++.++|.+|+|+-+++ .
T Consensus 367 ~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~------~ 440 (618)
T KOG3762|consen 367 VFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM------Y 440 (618)
T ss_pred HhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee------e
Confidence 445555544444444444444455556656677876433322 44444567777888899999999999988 7
Q ss_pred HHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHH-HHHHhHHHHHhhhHHHHH
Q 014047 289 CTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFIL-LGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~i~~p~i~g~i 366 (431)
+++.+..+=++.+....+ |..+..-++.|+..+.++....++++...||+.+.++.+++. ..-.+|-.+ |.+++|.+
T Consensus 441 lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~-GslIGG~~ 519 (618)
T KOG3762|consen 441 LGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGL-GSLIGGFV 519 (618)
T ss_pred ehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcch-hhhhhhhh
Confidence 777776666666665544 444555599999999999999999999999999999999987 456688888 78899999
Q ss_pred HhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 367 YDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
..+.+ -+..|.+.++.|++.+++...+.
T Consensus 520 v~~fg-------------~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 520 VERFG-------------ARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred heeeh-------------hHHHHHHHHHHHHHHHHHHHHhh
Confidence 88887 57888888877777666655443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.1e-07 Score=90.81 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=105.5
Q ss_pred HHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHh----hhcccCcchHHHHHHHHHHH
Q 014047 222 FVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEH----YVRSKAIPRTVWITCTHIMM 294 (431)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr----~grr~~~~r~~~~~~~~~~~ 294 (431)
+..+........+..+++.|+++. |+++... ++++..+..++..|+.|+++|| +|||+.. +..+....
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~-----il~g~i~~ 87 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPW-----ILIGTLAN 87 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchh-----HhhhhHHH
Confidence 333334444455666677777765 9998765 7888889999999999999995 5776554 23344444
Q ss_pred HHHHHHHHhhh---hh----HHHHHHHHHHHHhhhhhhhHHHHHHHhh-cCCchhhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 295 ILTFLLYASAL---SG----TLYAATVLLGVCYGVIYSLMVPTASELF-GLKHFGLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 295 ~~~~~~~~~~~---~~----~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
++++.++.... .. .+++..++.++++.....+..++.+|+. .+++|.+..+.......+|+.+ .+.+...+
T Consensus 88 ~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~-~~~~~~~~ 166 (473)
T PRK10429 88 SVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFV-TAGFTLPF 166 (473)
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44433332211 11 2333445667777777788889999988 4778998888877777777666 34344434
Q ss_pred HhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 367 YDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
.+..+... ...+|+....+.+++.+++.++.++
T Consensus 167 ~~~~g~~~------~~~g~~~~~~i~~~~~~~~~~~~~~ 199 (473)
T PRK10429 167 VNYVGGGD------RGFGFQMFTLVLIAFFIVSTIITLR 199 (473)
T ss_pred HHHhCCCc------hhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 33322100 0123666666666665555544443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.4e-07 Score=90.38 Aligned_cols=167 Identities=13% Similarity=0.067 Sum_probs=100.3
Q ss_pred HHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh--
Q 014047 231 GVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-- 305 (431)
Q Consensus 231 ~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-- 305 (431)
...+..+++.|+.+ +|++.... ++++..+..++..|+.|+++||.+.|..-+|+++ ..+.+..++...++...+
T Consensus 25 ~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~i-l~~~~~~~i~~~l~f~~p~~ 103 (444)
T PRK09669 25 WQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYL-LWFAIPFGVVCLLTFYTPDF 103 (444)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhH-HHHHHHHHHHHHHHHhCCCC
Confidence 34445566666655 59998765 8888889999999999999999443322122222 333333333332222211
Q ss_pred --h---hHHHHHHHHHHHHhhhhhhhHHHHHHHhh-cCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccc
Q 014047 306 --S---GTLYAATVLLGVCYGVIYSLMVPTASELF-GLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTC 379 (431)
Q Consensus 306 --~---~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~ 379 (431)
. ...++..++.+.++.....+..++.+|+. .+++|++..+.-.....+|..+ ++.+...+....+...
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i-~~~~~~pl~~~~~~~~----- 177 (444)
T PRK09669 104 GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLI-VSVIALPLVDILGKGD----- 177 (444)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc-----
Confidence 1 13334445666677777777788999987 4467888878877777777776 4544444443332100
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 380 IGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 380 ~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
...+|+..+.+.++++++..++.++
T Consensus 178 -~~~g~~~~~~i~~ii~~v~~~~~~~ 202 (444)
T PRK09669 178 -EQKGYFYAMMVMGLLGVVLFFCCFF 202 (444)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 0134888888777776666554444
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=93.49 Aligned_cols=168 Identities=18% Similarity=0.169 Sum_probs=116.8
Q ss_pred hHHHHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhH----hhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 014047 230 AGVTVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSE----HYVRSKAIPRTVWITCTHIMMILTFLLYA 302 (431)
Q Consensus 230 ~~~~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsD----r~grr~~~~r~~~~~~~~~~~~~~~~~~~ 302 (431)
.......+++.++.+. |.++... +..+..+..++..|+.|+++| |+|||+.. +.++.++.++++.++.
T Consensus 16 ~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~-----~l~g~i~~~~~~~llf 90 (428)
T PF13347_consen 16 IWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPW-----ILIGAILLALSFFLLF 90 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceE-----eehhhHHHHHHHHHhh
Confidence 3333444555555554 9998765 777788999999999999999 78988776 3455555555555544
Q ss_pred hhhh---------hHHHHHHHHHHHHhhhhhhhHHHHHHHhhc-CCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhc
Q 014047 303 SALS---------GTLYAATVLLGVCYGVIYSLMVPTASELFG-LKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEAT 372 (431)
Q Consensus 303 ~~~~---------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~ 372 (431)
...+ ..+.+..++..+++.....+..++.+|+.+ +++|.+..+.-.....+|..+ ...+.+.+.+..+.
T Consensus 91 ~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l-~~~~~~~l~~~~g~ 169 (428)
T PF13347_consen 91 SPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLL-ASFLAPILVSWFGG 169 (428)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHH-HHHHhhhhhhhhcc
Confidence 3311 123444566677788888888899999987 467999999988888888876 45566766665543
Q ss_pred ccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 373 KQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 373 ~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
.+. ..+|++..++.+++.+++.++..+..+|
T Consensus 170 ~~~------~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 170 GDT------SNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred Ccc------chHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 110 0249999888888888877776665555
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.7e-10 Score=112.65 Aligned_cols=136 Identities=25% Similarity=0.268 Sum_probs=105.6
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhhhhhhhHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL----SGTLYAATVLLGVCYGVIYSLMV 328 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~G~~~g~~~~~~~ 328 (431)
..+...++..+|.+++|+++||+|||+.+ .++.++..++.++....+ ...+.+++++.|++.|+.....+
T Consensus 51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 51 LTSSFFIGAIVGALIFGFLADRYGRKPAL------IISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHhhhcccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 78888999999999999999999999888 666666666666665554 35678888999999999999999
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 329 PTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 329 ~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
.++.|..|+++||....+......+|..+ +. +.+........ .+.||..+.+..+.+++..+...+
T Consensus 125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~-~~-~~~~~~~~~~~---------~~~Wr~~~~~~~~~~l~~~~~~~~ 190 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSLFQLFWALGILL-AS-LIGYIVSYYSD---------NWGWRILLIFGAIPSLLVLLLRFF 190 (451)
T ss_pred ccccccccccccccccccccccccccccc-cc-ccccccccccc---------cccccccccccccccccccccccc
Confidence 99999999999999999999888888877 55 33333322110 133999998888777665554433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-06 Score=86.30 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=89.5
Q ss_pred HHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhccc-CcchHHHHHHHHHHHHHH
Q 014047 222 FVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSK-AIPRTVWITCTHIMMILT 297 (431)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~-~~~r~~~~~~~~~~~~~~ 297 (431)
+..++.+.....+...++.++++ .|++..+. +.+...++..++++++|+++||+|+|+ .+ .++.++..++
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~------~~~~~~~~~~ 82 (418)
T TIGR00889 9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVY------AVCHFAGALL 82 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH------HHHHHHHHHH
Confidence 33444444444555666666654 69988776 889999999999999999999997644 33 3334444344
Q ss_pred HHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHh--------hcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHh
Q 014047 298 FLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASEL--------FGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYD 368 (431)
Q Consensus 298 ~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~--------~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~ 368 (431)
..+....+ .+.+++.+++.|++.+...+...++..+. .....+.+.+| .+|..+ +|.++|.+ +
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~i-g~~l~g~l-~ 154 (418)
T TIGR00889 83 LFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIA-AMWAVSLL-D 154 (418)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHH-HHHHHHHh-c
Confidence 44433333 34455566677776665555444443222 11122344444 356666 67677766 2
Q ss_pred hhhcccCCcccccccccHHHHHHHHHHHHHHHHHHH
Q 014047 369 AEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSI 404 (431)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 404 (431)
... -+..|++.+++.++..++.+
T Consensus 155 ~~~-------------~~~~f~~~~~~~~~~~~~~~ 177 (418)
T TIGR00889 155 IEL-------------SNIQLYITAGSSALLGVFAL 177 (418)
T ss_pred ccc-------------hhHHHHHHHHHHHHHHHHHh
Confidence 211 12356666666665554433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-06 Score=86.54 Aligned_cols=172 Identities=20% Similarity=0.189 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHH
Q 014047 217 FWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~ 293 (431)
...+...++..... ......++.+++ ++|++.++. ..+...+...+ .+++|+++||++. ...+|++.+.+..++
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i-~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPL-FGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-CCccchHHHHHHHHH
Confidence 33444445544444 445555666666 569998775 77778888877 5559999999961 111222333444444
Q ss_pred H-HHHHHHHHhhhh-h-HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhh---HHHHHHHHHHhHHHHHhhhHHHHHH
Q 014047 294 M-ILTFLLYASALS-G-TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGL---IYNFILLGNPIGALLFSGLLAGKLY 367 (431)
Q Consensus 294 ~-~~~~~~~~~~~~-~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~---~~g~~~~~~~lg~~i~~p~i~g~i~ 367 (431)
. .+.+..++.... . ...+..++.+++.+..-...-++..|..+ +.++. ..+..+....+|..+ ++.++|.+.
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~v-g~~l~G~l~ 182 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLI-SSLLGGPLL 182 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHH-HHHHHHHHH
Confidence 3 233332332222 2 23335677788888888888899999987 44433 344445555688888 888999999
Q ss_pred hhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 368 DAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
+..+ |+..|++.+++.++..+..+++
T Consensus 183 ~~~~-------------~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 183 DKTL-------------TRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred HhcC-------------cchHHHHHHHHHHHHHHHHHhc
Confidence 8877 9999999888877774444433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.9e-07 Score=87.38 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=122.1
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHHHh--CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhc-ccCcchHHHHHHHH
Q 014047 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVAL--GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVR-SKAIPRTVWITCTH 291 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~gr-r~~~~r~~~~~~~~ 291 (431)
.|+..+..++...-...+....-+|++++ +-+.+.. +++...++.+++.++.|+.+.|.+. |+.+ +++.
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl------i~s~ 109 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL------IVSF 109 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH------HHHH
Confidence 34444444444433334444455677764 3333332 8888999999999999999999985 5555 6777
Q ss_pred HHHHHHHHHHH-hh-----hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 292 IMMILTFLLYA-SA-----LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 292 ~~~~~~~~~~~-~~-----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
++++++.+++. .. ..+.+++++++.|+|.|.. +..=+++++.--.++|-++.+....+..+|..+ ||.+ +.
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~il-Gp~~-q~ 186 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIIL-GPTI-QL 186 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHH-hHHH-HH
Confidence 77777777662 21 2357888999999988776 556678888666788888888888877777777 7743 33
Q ss_pred HHhhhhcccCC-cccccccccHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 014047 366 LYDAEATKQGS-STCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRP 412 (431)
Q Consensus 366 i~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 412 (431)
.....+.++.. ..-..-+-|..+-|+++++.++.+++..+..+|..+
T Consensus 187 ~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 187 AFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 33332221100 000112347888888888888888877776655443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-06 Score=82.50 Aligned_cols=126 Identities=22% Similarity=0.206 Sum_probs=84.2
Q ss_pred HHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 014047 225 FLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYA 302 (431)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~ 302 (431)
++.+...-.+.+.++.|+++.|++..+. +.++..+...++.+++|+++||.++++.. +.+..++.++..+...
T Consensus 12 f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~-----l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 12 FLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRI-----LALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHH-----HHHHHHHHHHHHHHHH
Confidence 3333344456677899999999998776 88889999999999999999998765443 1333333333333333
Q ss_pred hhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 303 SAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 303 ~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
..+ .+.++...++..+.+....+...++..+... +++..+|-.-+.+.+|-.+
T Consensus 87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~ 140 (400)
T PF03825_consen 87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIV 140 (400)
T ss_pred HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHH
Confidence 333 3345555566677777777888888877764 4556666666666666665
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-06 Score=77.74 Aligned_cols=133 Identities=13% Similarity=0.094 Sum_probs=89.0
Q ss_pred hhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh-
Q 014047 227 GVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS- 303 (431)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~- 303 (431)
..+..+.+..+-|++-+++|+|.++. +...-.++..+| ++.|.+.|++|++.+. .++.+...+++..+..
T Consensus 14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l------~iG~~~~~~GY~~~~l~ 86 (250)
T PF06813_consen 14 CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVL------LIGAVLGFVGYGLLWLA 86 (250)
T ss_pred hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHH------HHHHHHHHHHHHHHHHH
Confidence 34455667777888888889998886 555556777765 8889999999988555 6666666666655432
Q ss_pred -hh-----h-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHh
Q 014047 304 -AL-----S-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYD 368 (431)
Q Consensus 304 -~~-----~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~ 368 (431)
.. + +.+.+...+.|.+.+......-....+.|| ++||++.|+.-....+++.++.. +...+++
T Consensus 87 ~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~-i~~~~f~ 156 (250)
T PF06813_consen 87 VSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQ-IYSAFFG 156 (250)
T ss_pred HhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHH-HHHHHcC
Confidence 11 1 233333344444444444444555668896 68999999999999998887544 4444443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-05 Score=80.33 Aligned_cols=176 Identities=11% Similarity=-0.017 Sum_probs=108.2
Q ss_pred HHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHH
Q 014047 222 FVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTF 298 (431)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~ 298 (431)
+.-+........+..++..|+.+. |+++... ++.+.-+..++.-|+.|+++||...|..-.|+|++. +.+.+++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~-g~i~~~i~~ 94 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLF-GALPFGIVC 94 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhH-HHHHHHHHH
Confidence 333333344444556666666665 9998765 788888999999999999999854333323334433 333333343
Q ss_pred HHHHhhh---h----hHHHHHHHHHHHHhhhhhhhHHHHHHHhhc-CCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 299 LLYASAL---S----GTLYAATVLLGVCYGVIYSLMVPTASELFG-LKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 299 ~~~~~~~---~----~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
.++...+ . ..+++..++..+++.....+..++.+|+.+ +++|.+..+.-..+..+|..+ ++.+...+....
T Consensus 95 ~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~-~~~~~~plv~~~ 173 (460)
T PRK11462 95 VLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGML-STVLMMPLVNLI 173 (460)
T ss_pred HHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 3332211 1 123444456677888888888899999886 577999999988888888777 555555554443
Q ss_pred hcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 371 ATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
+..+ ...+|+....+.+++.+++.++.+.
T Consensus 174 g~~~------~~~g~~~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 174 GGDN------KPLGFQGGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred CCCc------hhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3100 0124777666666665555444433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.3e-05 Score=73.10 Aligned_cols=151 Identities=18% Similarity=0.100 Sum_probs=93.4
Q ss_pred HHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 014047 241 IGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGV 318 (431)
Q Consensus 241 ~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 318 (431)
.+++.|++..+. +...-...+.+..++.|.++||+|||+.. .+..++..+.++.-...+...+++++++.|+
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~c------l~~cily~~scl~k~~~~~~~L~~GRvlgGi 133 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKAC------LLFCILYSLSCLTKHSSNYPVLLLGRVLGGI 133 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH------HHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 446678887765 66666777888889999999999999765 4444555555554444445688999999999
Q ss_pred HhhhhhhhHHHHH-HHhh----cCCchhhHHHHHH-HHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHH
Q 014047 319 CYGVIYSLMVPTA-SELF----GLKHFGLIYNFIL-LGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVL 392 (431)
Q Consensus 319 ~~g~~~~~~~~~~-~~~~----~~~~~g~~~g~~~-~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~ 392 (431)
+....++..=+.+ .|.- |.+..+...+... ..+.+-.+. +.+++-.+.+..+ .+-..+|...
T Consensus 134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~-aGv~a~~l~~~~~-----------~g~vaPF~~a 201 (354)
T PF05631_consen 134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIG-AGVVANVLADWFG-----------FGPVAPFDAA 201 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHH-HhHHHHHHHHHhC-----------CCCcchHHHH
Confidence 9999887766654 4432 2222333333322 222222222 3333334444443 1136788888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 014047 393 AGVCGLGTILSIILTIR 409 (431)
Q Consensus 393 ~~~~~i~~i~~~~~~~~ 409 (431)
.++.+++.+++...+.+
T Consensus 202 ~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 202 IVLLAVAAVLILKTWPE 218 (354)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 88888877766554444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-05 Score=80.33 Aligned_cols=120 Identities=15% Similarity=0.110 Sum_probs=73.4
Q ss_pred HHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh----h
Q 014047 233 TVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA----L 305 (431)
Q Consensus 233 ~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~----~ 305 (431)
....+++.|+++. |++.... +.++..+..++..++.|+++||.++|+.-+|.++...+..+...+.+.+... .
T Consensus 26 ~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (448)
T PRK09848 26 MGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSH 105 (448)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCc
Confidence 3444555677665 9987765 8888899999999999999999866554334444333333332332222211 1
Q ss_pred h---hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC-CchhhHHHHHHHHHH
Q 014047 306 S---GTLYAATVLLGVCYGVIYSLMVPTASELFGL-KHFGLIYNFILLGNP 352 (431)
Q Consensus 306 ~---~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~ 352 (431)
. ...++..++.+++++....+..++..++... ++|....+.-..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~ 156 (448)
T PRK09848 106 SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAAS 156 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 1 1233344667888888877777777776644 457766555444333
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.7e-06 Score=85.14 Aligned_cols=159 Identities=18% Similarity=0.257 Sum_probs=112.2
Q ss_pred HHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhh-hcccCcchHHHHHHHHHHHHHHHHHHHhhh----
Q 014047 234 VLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHY-VRSKAIPRTVWITCTHIMMILTFLLYASAL---- 305 (431)
Q Consensus 234 ~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~-grr~~~~r~~~~~~~~~~~~~~~~~~~~~~---- 305 (431)
+...+..|++ .+|+++..+ +...+.....+...++|+++|++ |+++.+ .++.++..+++.+++...
T Consensus 6 m~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tI------l~~~ii~~lG~~llai~a~~~~ 79 (654)
T TIGR00926 6 MRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTI------LYLSIVYVVGHALLSFGAIPSS 79 (654)
T ss_pred cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHhccCccc
Confidence 3344444544 458877655 66666666777889999999985 776655 555556666666554321
Q ss_pred --h---hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCc---hhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCc
Q 014047 306 --S---GTLYAATVLLGVCYGVIYSLMVPTASELFGLKH---FGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSS 377 (431)
Q Consensus 306 --~---~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~ 377 (431)
. ...++++++.++|.|++-+...+...|.+.+++ +-..+.+.+.+.++|+.+ ++.+.+++.+..+
T Consensus 80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSli-s~~i~~~l~~~~~------ 152 (654)
T TIGR00926 80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLI-STIITPILRGDVG------ 152 (654)
T ss_pred ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc------
Confidence 0 135566778888999999999999999997543 566788888999999998 7778888765432
Q ss_pred cccc-ccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 378 TCIG-AECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 378 ~~~~-~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
|.+ ..||..+|.+.+++.++++++.+..
T Consensus 153 -~fg~~~~~~~aF~i~~i~m~ia~lvf~~g 181 (654)
T TIGR00926 153 -CFGCQDCYPLAFGVPAILMILALIVFMAG 181 (654)
T ss_pred -ccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 322 2469999999999888887765543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-05 Score=77.13 Aligned_cols=122 Identities=19% Similarity=0.138 Sum_probs=85.1
Q ss_pred HHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhh-----cccCcchHHHHHHHHHHHHHHHHHHHh-----hh-----
Q 014047 243 VALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYV-----RSKAIPRTVWITCTHIMMILTFLLYAS-----AL----- 305 (431)
Q Consensus 243 ~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~g-----rr~~~~r~~~~~~~~~~~~~~~~~~~~-----~~----- 305 (431)
.+++.++.-. .+.+..+. ...|+.+|+.||+.+ ||..+ +..+.++.+.+.....+ ..
T Consensus 8 vEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPy-----I~~G~~~~~~g~~~ap~a~~~l~~~~~~~ 81 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPY-----IWGGTLLQAGGLAIAPFALLLLAESGQQS 81 (403)
T ss_pred HHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhh-----hHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 4566665543 34444443 457999999999988 55544 33344443333322211 11
Q ss_pred --h---h--HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhh
Q 014047 306 --S---G--TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 306 --~---~--~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~ 371 (431)
+ + ...+...+.|+|.+...+...++..|..++++|+++.++.+.+..+|.++ +..+.|.+.+.+.
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv-~ai~~g~lL~~~s 153 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIV-SAIVFGRLLDPFS 153 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHccccC
Confidence 1 1 23445567889998888999999999999999999999999999999999 7789998888765
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-05 Score=78.53 Aligned_cols=101 Identities=10% Similarity=0.091 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTA 331 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~ 331 (431)
+-.+..+.+++..++.|++-.++.+-.. ..+.+..++.+..++++...++ +..++..++++..+....++...-+
T Consensus 303 veA~~tllga~~a~~ag~~~~~w~~~~~----l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i 378 (511)
T TIGR00806 303 VDAASTLLGAITSFIAGFVNIRWARWSK----LLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI 378 (511)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCchhhHH----HHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777888899998665522111 1223333333333333333333 5667888899988988888888888
Q ss_pred HHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 332 SELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 332 ~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
+.....+..|...|+.+....+-+.+
T Consensus 379 A~~L~~~~~aLvFGiNtfvAl~LQti 404 (511)
T TIGR00806 379 ASSLSKELCALVFGINTFVATALKTI 404 (511)
T ss_pred HHHhcccceEEEEecHHHHHHHHHHh
Confidence 88888888899999988776666655
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-05 Score=74.09 Aligned_cols=138 Identities=15% Similarity=0.124 Sum_probs=96.5
Q ss_pred CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhh
Q 014047 246 GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGV 322 (431)
Q Consensus 246 g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~ 322 (431)
|.+..+. +......+..+|+..+|.++|++|||+.+ .......++..++-....+ .++++...+.|+|.|+
T Consensus 109 ~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f------~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg 182 (528)
T KOG0253|consen 109 GPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGF------NLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG 182 (528)
T ss_pred chhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhh------hhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC
Confidence 6555444 66667889999999999999999999887 5555555444444333333 4778888999999999
Q ss_pred hhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHH
Q 014047 323 IYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTIL 402 (431)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 402 (431)
.+...++-.|..|..+|+.-.-+. ....+|.++ ...+.=.+....| |||-+..+..-..+.+.+
T Consensus 183 -~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~-ea~law~vm~~~g-------------wr~~l~~~~~pl~~~a~f 246 (528)
T KOG0253|consen 183 -LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVF-EALLAWGVMSNFG-------------WRYLLFTSSTPLMFAARF 246 (528)
T ss_pred -ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHH-HHHHHHHHHHhhh-------------HHHHHHHHHhHHHHHHHH
Confidence 777778888888888887655554 778888888 4434433444555 998877766555554444
Q ss_pred HHH
Q 014047 403 SII 405 (431)
Q Consensus 403 ~~~ 405 (431)
.++
T Consensus 247 ~~w 249 (528)
T KOG0253|consen 247 LVW 249 (528)
T ss_pred Hhh
Confidence 443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-05 Score=77.66 Aligned_cols=179 Identities=14% Similarity=0.062 Sum_probs=120.4
Q ss_pred HHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHH
Q 014047 220 LWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMIL 296 (431)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~ 296 (431)
....-+...........++..|+.+. |+++..+ ++.+.-+..++.-|+.|.++||..+|+.-.|+|++....-+..+
T Consensus 17 Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~ 96 (467)
T COG2211 17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIV 96 (467)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHH
Confidence 33344444444455667777888776 9998776 78888899999999999999987766655566655554444444
Q ss_pred HHHHHHhhh----h--hHHHHHHHHHHHHhhhhhhhHHHHHHHhhc-CCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhh
Q 014047 297 TFLLYASAL----S--GTLYAATVLLGVCYGVIYSLMVPTASELFG-LKHFGLIYNFILLGNPIGALLFSGLLAGKLYDA 369 (431)
Q Consensus 297 ~~~~~~~~~----~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~ 369 (431)
..+.+...+ . ...++...+.++++.....+..++.+++.. +++|.+..+.-..+..+|..+ ...+.+.+...
T Consensus 97 ~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l-~~~~~~plv~~ 175 (467)
T COG2211 97 AVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLL-VAVLFPPLVKL 175 (467)
T ss_pred HHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 433333221 1 234555678889999988888899988874 467999888888888888777 55566677666
Q ss_pred hhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 370 EATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
.+..+. ..+|+.+..+.+++..+..+.++.
T Consensus 176 ~g~~~~------~~g~~~~~~~~~vi~~i~~l~~~~ 205 (467)
T COG2211 176 FGGGDK------ALGYQGTALVLGVIGVILLLFCFF 205 (467)
T ss_pred hCCCcc------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 654221 235777766666665555555444
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-05 Score=77.75 Aligned_cols=122 Identities=20% Similarity=0.225 Sum_probs=91.9
Q ss_pred HhCCCcchh--HHHHHHHHHhhhhhhhh-HHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 014047 244 ALGVNDTTE--LLCLFSLCNFAGRLGSG-VLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCY 320 (431)
Q Consensus 244 ~~g~s~~~~--~~s~~~i~~~ig~~~~G-~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 320 (431)
.+|++.... +.+..++...++..+.. .+.-.+|-|+.. .+++..-.+...++++.+..++...........
T Consensus 271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i------~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~ 344 (463)
T KOG2816|consen 271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLI------SLGLLSEFLQLLLFAFATETWMMFAAGVVVALA 344 (463)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh------hHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh
Confidence 347776654 66777777777777766 677778888654 777777778877777766544444444444456
Q ss_pred hhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhc
Q 014047 321 GVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEAT 372 (431)
Q Consensus 321 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~ 372 (431)
+...+..-+.++...+++.+|++.++......+.+.+ +|.+.+.++..+..
T Consensus 345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~-~~~~~~~i~~~t~~ 395 (463)
T KOG2816|consen 345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVV-SPALYGNIFALTLD 395 (463)
T ss_pred cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhh-hHHHHHHHHHHHHH
Confidence 6667888888999999999999999999999999999 78899988876643
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.7e-05 Score=76.72 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=97.3
Q ss_pred HHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HhhhhhhhHHHHHHHh
Q 014047 257 FSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGV--CYGVIYSLMVPTASEL 334 (431)
Q Consensus 257 ~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~--~~g~~~~~~~~~~~~~ 334 (431)
..+...+..+..|.++||+|||..+ ...+....+.-....+.. ++.++ +.++ +++..++...++++|.
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L------~~~~~~~~l~~~~~~~~~-~~~~~---~~~l~g~~~~~~s~~~a~vadi 140 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVL------LLPLFGTILPALCLLFQG-YWFFL---LLGLSGGFSAIFSVGFAYVADI 140 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhH------HHHHHHHHHhHHHHHHHH-HHHhh---hcccccchhhhhhhhhhheeec
Confidence 3677888999999999999999766 333333333333222222 33332 3333 3455667888999999
Q ss_pred hcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 014047 335 FGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRP 412 (431)
Q Consensus 335 ~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 412 (431)
...+.|...+|+++.....+..+ +|.+++.+....+ +-.+|.+..+..+++.+..++..++...
T Consensus 141 s~~~~R~~~~gll~~~~~~~~~~-~p~~~~~~~~~~~-------------~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 141 SSEEERSSSIGLLSGTFGAGLVI-GPALGGYLVKFLG-------------IALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred cchhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhcC-------------chHHHHHHHHHHHHHHHHHhhccccccC
Confidence 99999999999999988888888 8989999888876 8889999999988888887776666543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0072 Score=59.76 Aligned_cols=111 Identities=20% Similarity=0.078 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHH-HHHHHHHHHHHHHHHHHhh-------h----hhHHHHHHHHHHHHh
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTV-WITCTHIMMILTFLLYASA-------L----SGTLYAATVLLGVCY 320 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~-~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~l~G~~~ 320 (431)
.-++..+.-++..|+..++--+.++++.-++.. -+.+++.++..+++++... . ..+++...+++++|-
T Consensus 329 fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gE 408 (498)
T COG3104 329 FQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGE 408 (498)
T ss_pred HHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHH
Confidence 777777888888888888888877664333322 2344555555555544322 1 246777788999988
Q ss_pred hhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHH
Q 014047 321 GVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAG 364 (431)
Q Consensus 321 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g 364 (431)
-...++..+++....|+...+...++..+....|+.+ +..+.+
T Consensus 409 L~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l-~g~va~ 451 (498)
T COG3104 409 LFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTL-GGQVAG 451 (498)
T ss_pred HHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-hceecc
Confidence 8888888999999999988899999988888888888 444555
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00063 Score=63.09 Aligned_cols=147 Identities=27% Similarity=0.286 Sum_probs=97.5
Q ss_pred HHHhhHHHHHHHhCCCc----chhHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh---
Q 014047 233 TVLNNLAQIGVALGVND----TTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL--- 305 (431)
Q Consensus 233 ~~~~~l~~~~~~~g~s~----~~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~--- 305 (431)
......+.+..+.+.+. .....+...+...++.++.|.++||+|||+.+ ..+......+.+......
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~ 93 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVL------IIGLLLFLLGTLLLALAPNVG 93 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHH------HHHHHHHHHHHHHHHhCccch
Confidence 34455666666665554 23378888888888889999999999988444 333222222222222222
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC-CchhhHHHHHHH-HHHhHHHHHhhhHHHHHHhhhhcccCCccccccc
Q 014047 306 SGTLYAATVLLGVCYGVIYSLMVPTASELFGL-KHFGLIYNFILL-GNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAE 383 (431)
Q Consensus 306 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~-~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~ 383 (431)
...+++..++.|++.|...+...+++.+.++. +.++...+.... ...+|..+ +|.+.+.+... .. .
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~----------~ 161 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLAL-GPLLAGLLLGA-LL----------W 161 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-Hh----------c
Confidence 24555666668898888889999999999987 578888888887 46677777 77677776665 21 2
Q ss_pred ccHHHHHHHHHHHH
Q 014047 384 CFRLTFLVLAGVCG 397 (431)
Q Consensus 384 ~~~~~f~~~~~~~~ 397 (431)
+|+..|........
T Consensus 162 ~~~~~~~~~~~~~~ 175 (338)
T COG0477 162 GWRAAFLLAALLGL 175 (338)
T ss_pred chHHHHHHHHHHHH
Confidence 38886666555443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00056 Score=68.28 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=46.2
Q ss_pred HHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhh
Q 014047 314 VLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 314 ~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~ 371 (431)
++..+..+..+-+...+++++-|+..-|+.++++....++|..+ +..++..+.+..+
T Consensus 326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~-s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSV-SSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 45555555656666678899999999999999999999999999 7778888777766
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0012 Score=66.57 Aligned_cols=146 Identities=14% Similarity=0.018 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh--hhHH-HHHHHHHHHHhhhhhhhHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL--SGTL-YAATVLLGVCYGVIYSLMVP 329 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~l~G~~~g~~~~~~~~ 329 (431)
..++..+..++-.|+.|.++|+-++||.+ +.....+..+....+.+.+ .+.+ .+..++.-++++......++
T Consensus 75 ~~sis~l~~all~P~lGa~aD~~~~Rk~~-----l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 75 ANSISGLLQALLAPFLGAIADYGGRRKRF-----LLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccchHH-----HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888899999999999999988776 2333333333333333322 2333 23334445677888888999
Q ss_pred HHHHhhcCCch--------------------------hhHHHHHHHHHHhHHHHHhhhHHHHH-HhhhhcccCCcccccc
Q 014047 330 TASELFGLKHF--------------------------GLIYNFILLGNPIGALLFSGLLAGKL-YDAEATKQGSSTCIGA 382 (431)
Q Consensus 330 ~~~~~~~~~~~--------------------------g~~~g~~~~~~~lg~~i~~p~i~g~i-~~~~~~~~~~~~~~~~ 382 (431)
+.+|+.+++.+ ++..|.-...+.+|+.+ .- +.... ....+.. -...
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v-~l-~i~l~~~~~~~~~-----~~~~ 222 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLV-AL-LISLLLVISPGST-----ASNT 222 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHH-HH-HHHHHHHHcCCCc-----cccc
Confidence 99999988888 89999988888888887 32 33322 2222210 1112
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014047 383 ECFRLTFLVLAGVCGLGTILSIILTIRI 410 (431)
Q Consensus 383 ~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 410 (431)
...|.++.+.++..++-.+..++..+++
T Consensus 223 ~~~r~~~~~~a~ww~vfsiP~~~~~~~~ 250 (477)
T PF11700_consen 223 WAIRVAFLIVALWWLVFSIPLFLWLPDR 250 (477)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3478888888887776666655554433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00056 Score=57.70 Aligned_cols=101 Identities=11% Similarity=0.013 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTAS 332 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 332 (431)
-.++......+..++.+.+.+++|.|+.+ +++.+...+-.......+.+.++.+.++.|++.+..+.....++.
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm------~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt 115 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSM------ILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLT 115 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence 55555666677778888999999999666 666655554443333445567888889999999999999999999
Q ss_pred HhhcCCchhhHHHHHHHHHHhHHHHHhh
Q 014047 333 ELFGLKHFGLIYNFILLGNPIGALLFSG 360 (431)
Q Consensus 333 ~~~~~~~~g~~~g~~~~~~~lg~~i~~p 360 (431)
+...++.+++..++.......+..+ |.
T Consensus 116 ~~s~~~~~~~~~~ifw~i~~~s~i~-G~ 142 (156)
T PF05978_consen 116 SYSTEETIGRNTGIFWAIFQSSLIF-GN 142 (156)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHHHH-HH
Confidence 9888888999999988888887777 44
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00036 Score=69.66 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=101.9
Q ss_pred HHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhh---hcccCcchHHHHHHHHHHHHHHHHHHHhhh-----hh
Q 014047 238 LAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHY---VRSKAIPRTVWITCTHIMMILTFLLYASAL-----SG 307 (431)
Q Consensus 238 l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~---grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~ 307 (431)
.|.+.+++|.++++. ..+...+... ..++.|.++|-+ |+||. ..+.++.++..++.+.++... ..
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~----~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRK----PYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcch----HHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 344445679998765 6666666654 478899999986 33322 223444444433333333211 22
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhhcC--CchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccccccccc
Q 014047 308 TLYAATVLLGVCYGVIYSLMVPTASELFGL--KHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECF 385 (431)
Q Consensus 308 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~ 385 (431)
...+..++..+|....-.+.-+.+.|.... +.+|...+..+..+.+|+.+ +..+.|.+.+..+ +
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv-~~~l~G~l~~~~~-------------~ 153 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLV-GSLLSGPLLDSFG-------------P 153 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH-HHHhhhhhhhcCC-------------C
Confidence 344555666777777777788888887632 33778888888999999999 6779999988876 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 386 RLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 386 ~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
+..|.+.+++..+..+..+++.++
T Consensus 154 ~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 154 QGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred eEEehHHHHHHHHHHHHHHHhhhh
Confidence 788888888777776666665554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=53.33 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=49.9
Q ss_pred HHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCc
Q 014047 222 FVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAI 281 (431)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~ 281 (431)
..+++..+....+..++|.+.++.|++..+. +.++..+...++++++|+++||+++++..
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~ 68 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI 68 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence 3444455555677889999999999998876 88888999999999999999999998766
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=64.22 Aligned_cols=81 Identities=14% Similarity=0.295 Sum_probs=60.2
Q ss_pred HHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHH
Q 014047 315 LLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAG 394 (431)
Q Consensus 315 l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 394 (431)
++|.++-.......++-++..+|++.++..|++.....++..+ +|++...++...| +++.+.+..+
T Consensus 397 ~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~-~~~~~t~~~~~~g-------------~~~v~~~~~~ 462 (488)
T KOG2325|consen 397 VFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVV-GPIFSTAIFTLSG-------------PRPVWIILLC 462 (488)
T ss_pred eeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhh-hHHHHhhhHHhcC-------------ccHHHHHHHH
Confidence 3444444444566788899999999999999999999999999 8988888888887 7777776666
Q ss_pred HHHHHHHHHHHHHhh
Q 014047 395 VCGLGTILSIILTIR 409 (431)
Q Consensus 395 ~~~i~~i~~~~~~~~ 409 (431)
..++...+...+.++
T Consensus 463 ~~l~~~~l~~~~~~r 477 (488)
T KOG2325|consen 463 LLLVVAALWIVFLKR 477 (488)
T ss_pred HHHHHHHHHHHHHHh
Confidence 655555544444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.63 E-value=1.2e-05 Score=82.08 Aligned_cols=166 Identities=11% Similarity=0.033 Sum_probs=0.0
Q ss_pred CCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHH-HHHHhhhhhhhhHHhHhhhcccCc
Q 014047 206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLF-SLCNFAGRLGSGVLSEHYVRSKAI 281 (431)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~-~i~~~ig~~~~G~lsDr~grr~~~ 281 (431)
..++++++||.|....++..+......++..++|-|++. ++.+++.+ +.... ..+.++|.+++|++..|+.-+..-
T Consensus 296 ~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~ 375 (539)
T PF03137_consen 296 KALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARG 375 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHH
Confidence 456889999999999999888888888999999999985 58887665 33333 347789999999999998543211
Q ss_pred chHHHHHHHHHHHHH--HHHHHHhhh--------hh--------------------------------------HH---H
Q 014047 282 PRTVWITCTHIMMIL--TFLLYASAL--------SG--------------------------------------TL---Y 310 (431)
Q Consensus 282 ~r~~~~~~~~~~~~~--~~~~~~~~~--------~~--------------------------------------~~---~ 310 (431)
.-++..++..+.... ..+++.-.+ ++ .+ +
T Consensus 376 ~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl 455 (539)
T PF03137_consen 376 AAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFL 455 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHH
Confidence 000111111111100 011100000 00 01 1
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhh
Q 014047 311 AATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 311 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~ 371 (431)
+..++.-+..+....+...++...+++++|+.+.|+..+...+-+.+-+|+++|.+.|+.-
T Consensus 456 ~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC 516 (539)
T PF03137_consen 456 ILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC 516 (539)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence 1111222223333344445566889999999999999976665454449999999999864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0071 Score=62.89 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=58.3
Q ss_pred CHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HH-HHHHHHHhhhhhhhhHHhHhhhcc
Q 014047 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LL-CLFSLCNFAGRLGSGVLSEHYVRS 278 (431)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~-s~~~i~~~ig~~~~G~lsDr~grr 278 (431)
+.+++++||.|....++..+-.....++..++|-|++. +|.+++.+ +. ++.-.+.++|.+++|++..|+.-+
T Consensus 384 s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~ 459 (735)
T KOG3626|consen 384 SIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS 459 (735)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence 45889999999999999998888888999999999985 49988776 33 333456778999999999988543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.012 Score=60.06 Aligned_cols=146 Identities=21% Similarity=0.182 Sum_probs=80.1
Q ss_pred HHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHH
Q 014047 221 WFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILT 297 (431)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~ 297 (431)
.+..++...+...+-.....++.-+ |.+..+. +++++..+..+|..++|++.++.-++... .-+.++++.....
T Consensus 20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~---~e~~i~l~~~~~~ 96 (521)
T PRK03612 20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA---VELLLALLGGLSA 96 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHH
Confidence 3444445555555665555555543 7665544 88888899999998888876443332211 0001111110011
Q ss_pred HHHHH---hhhh--hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHh-hhh
Q 014047 298 FLLYA---SALS--GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYD-AEA 371 (431)
Q Consensus 298 ~~~~~---~~~~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~-~~~ 371 (431)
.++.. .... ...+...++.++..|+.++....+..+. ..++.|...|-++....+|+.+ |.++.+++.- ..|
T Consensus 97 ~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~-G~l~~~~vLlp~lG 174 (521)
T PRK03612 97 LILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALV-GGLAFPFLLLPRLG 174 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHH-HHHHHHHHHHHhcc
Confidence 11111 1111 1223344566777888877766655442 2234667788888888888888 6777776554 455
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00016 Score=65.77 Aligned_cols=149 Identities=20% Similarity=0.193 Sum_probs=104.5
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHH-Hh--CCC--cchh--HHHHHHHHHhhhhhhhhHHhHh-hhcccCcchHHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGV-AL--GVN--DTTE--LLCLFSLCNFAGRLGSGVLSEH-YVRSKAIPRTVW 286 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--g~s--~~~~--~~s~~~i~~~ig~~~~G~lsDr-~grr~~~~r~~~ 286 (431)
+++..+.+.+++..+..+.+. -|--+| ++ +.+ .+.. +.+.++..+.+-.+++|++.|| +|-|...
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd--~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gt----- 113 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYD--APGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGT----- 113 (459)
T ss_pred hHHHHHHHHHHhcccceeecC--CchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHH-----
Confidence 455555555555555544333 333333 22 333 2222 8888999999999999999998 4555333
Q ss_pred HHHHHHHHHHHHHHHHhh---h-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhH
Q 014047 287 ITCTHIMMILTFLLYASA---L-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLL 362 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i 362 (431)
.+..++..++.+.++.. + -+.+..+++++|+|.-......+.+..-.|..+..+.+.|+......+|+.+ +-.+
T Consensus 114 -ii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv-Nf~l 191 (459)
T KOG4686|consen 114 -IILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV-NFLL 191 (459)
T ss_pred -HHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee-eeee
Confidence 44444455666655532 2 2577888999999877776777888888898899999999999999999998 8889
Q ss_pred HHHHHhhhhc
Q 014047 363 AGKLYDAEAT 372 (431)
Q Consensus 363 ~g~i~~~~~~ 372 (431)
.++++|..+.
T Consensus 192 m~~ly~~~~~ 201 (459)
T KOG4686|consen 192 MPFLYDTMGR 201 (459)
T ss_pred cHHHHHHHHH
Confidence 9999998764
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.095 Score=51.22 Aligned_cols=106 Identities=19% Similarity=0.221 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHhhhhhhhHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS----ALSGTLYAATVLLGVCYGVIYSLMV 328 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G~~~g~~~~~~~ 328 (431)
....+.+|..++|--.-.+ | +++.|++.+...+..+.+++-+. .+.+.+++..+..|+..|..+....
T Consensus 286 Y~~~YQ~GVFISRSS~~~~-----r---ir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF 357 (402)
T PF02487_consen 286 YQLLYQLGVFISRSSLPFF-----R---IRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF 357 (402)
T ss_pred HHHHHHHHHhhhhcceeee-----e---hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6666667766666543221 2 23345555555544444333221 1234555666778999999998888
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHh
Q 014047 329 PTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYD 368 (431)
Q Consensus 329 ~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~ 368 (431)
..+.|..++++|-.+.|....+-.+|..+ +. +.|...+
T Consensus 358 ~~I~~~~~~~~REFslg~vsvsds~GI~l-Ag-ll~l~le 395 (402)
T PF02487_consen 358 YRISEEVPPEDREFSLGAVSVSDSLGILL-AG-LLGLPLE 395 (402)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhHHHHH-HH-HHHHHHH
Confidence 88899899999999999999999998888 55 4444433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.048 Score=53.34 Aligned_cols=145 Identities=8% Similarity=0.093 Sum_probs=81.3
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCC-cc----hhHHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN-DT----TELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s-~~----~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
++..+++......+-..+...+.+.+.++.-...++..-+ .. ..+-....+.++++.+..|++..++.+....
T Consensus 241 ~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l-- 318 (412)
T PF01770_consen 241 KSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGEL-- 318 (412)
T ss_pred HHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHH--
Confidence 4445566543333322333333334444444444554111 11 1266666777788889999986555553222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 284 TVWITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
.+.+..++.+..++++...++ +..+++.++.+..+....+....-++.....+..|...|+......+-+.+
T Consensus 319 --~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 319 --ALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred --HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 223333333334444444333 456777777777777777777777777777777888888877665555554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.019 Score=57.62 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=41.2
Q ss_pred HHHhhhhhh-hHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHh
Q 014047 317 GVCYGVIYS-LMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYD 368 (431)
Q Consensus 317 G~~~g~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~ 368 (431)
-+-.....+ +.++.+.|.+..++..+-+++...+.++|..+ ++.+..++.+
T Consensus 139 elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~-sg~~~~~~~~ 190 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIF-SGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 333344455 78899999999999999999999999999999 6767777664
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0058 Score=59.16 Aligned_cols=168 Identities=14% Similarity=-0.041 Sum_probs=104.4
Q ss_pred HHhhHHHHHHHh----CCCcch---h---HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh
Q 014047 234 VLNNLAQIGVAL----GVNDTT---E---LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS 303 (431)
Q Consensus 234 ~~~~l~~~~~~~----g~s~~~---~---~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~ 303 (431)
..+..|.|+++. |.+..+ . ..++..+..++-.|+-|.++|+.|+||.. +.....+..+....+.+
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~-----~~~f~~i~i~~~~~L~~ 108 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKF-----FGFFTAIGIISTFLLWF 108 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchH-----HHHHHHHHHHHHHHHHH
Confidence 334566666543 333322 1 67777788888999999999999999876 22222223333333332
Q ss_pred hh---h-hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhh----hhcccC
Q 014047 304 AL---S-GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDA----EATKQG 375 (431)
Q Consensus 304 ~~---~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~----~~~~~~ 375 (431)
.. . ...++..++..+++......+.+++.+..++++.++..++......+|+.+ +++.....-. .+....
T Consensus 109 i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i--~li~~~~~~~~~~~~~~~~~ 186 (438)
T COG2270 109 IPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVI--LLIFVVLGFALGQQTGITII 186 (438)
T ss_pred hCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchH--HHHHHHHHHhcccccceeEE
Confidence 22 2 234555577788888888899999999999999999988888888888876 3333321111 111000
Q ss_pred --CcccccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 014047 376 --SSTCIGAECFRLTFLVLAGVCGLGTILSIILTI 408 (431)
Q Consensus 376 --~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 408 (431)
+..-...+.-|.++.+.++..++-.+.++...+
T Consensus 187 l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~ 221 (438)
T COG2270 187 LLGLPPADGEDVRITGLLAALWWLLFALPMILNVH 221 (438)
T ss_pred eeccCccccccchhHHHHHHHHHHHHHhHHHhccc
Confidence 001112234788888888888877777666543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0065 Score=59.24 Aligned_cols=110 Identities=12% Similarity=0.102 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-h---h-----HHHHHHHHHHHHhhhh
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-S---G-----TLYAATVLLGVCYGVI 323 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~---~-----~~~~~~~l~G~~~g~~ 323 (431)
...++.+.+....+.+-|+.|++|-|... .++..+.+++..+=.... + . ....+-.+.+.+.-..
T Consensus 84 lsmIym~v~vp~gf~~mw~ldk~GLR~a~------llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fi 157 (480)
T KOG2563|consen 84 LSMIYMVVSVPFGFAAMWILDKFGLRTAL------LLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFI 157 (480)
T ss_pred HHHHHHHHHHHHhhHHHHhhcccchHHHH------HHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHh
Confidence 77777888888888888999999988555 677777777765532221 2 1 2234444555444444
Q ss_pred hhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhh
Q 014047 324 YSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDA 369 (431)
Q Consensus 324 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~ 369 (431)
...-.-+..-.||+++|+.+..+..++..+|..+ +-++-..+..+
T Consensus 158 m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvav-g~llppilV~~ 202 (480)
T KOG2563|consen 158 LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAV-GFLLPPILVPS 202 (480)
T ss_pred hccccHHHHhhCCcchhhhhhhHHHhcchHHHHH-HhhccceecCC
Confidence 4444455566789999999999988888888887 55444444443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0034 Score=59.74 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCC---ccccccc
Q 014047 307 GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGS---STCIGAE 383 (431)
Q Consensus 307 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~---~~~~~~~ 383 (431)
..+++..++.|.|.+...+..+.++.++.+++++++..++......+|..+ +|.+.+.+.......... .......
T Consensus 11 ~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~-gP~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (310)
T TIGR01272 11 VLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTV-APLFGGSLILSGAGDLSMQVATANAEAA 89 (310)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCCcchhhhhhhhhHHHH
Confidence 466777899999999999999999999999889999999999999999999 999999877432100000 0000012
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 014047 384 CFRLTFLVLAGVCGLGTILS 403 (431)
Q Consensus 384 ~~~~~f~~~~~~~~i~~i~~ 403 (431)
.|++++++.+++.++..++.
T Consensus 90 ~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 90 KVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 38889887766655544433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.2 Score=49.72 Aligned_cols=186 Identities=17% Similarity=0.095 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCC-Cc--chhHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHH-HHH
Q 014047 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGV-ND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWIT-CTH 291 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-s~--~~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~-~~~ 291 (431)
..+.++...++.....=++.+..|.++.+..- +- .......-.+..++..+..|...||..|.+.++...+.- +..
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence 34667777777777777888888888888722 21 112344445666778888899999999888764333222 222
Q ss_pred HHHHHHHHHHHhhhh-----hHHHHHHHHHHHHhhh---hhhhHHHHH--HHhh---cCCchhhHHHHHHHHHH---hHH
Q 014047 292 IMMILTFLLYASALS-----GTLYAATVLLGVCYGV---IYSLMVPTA--SELF---GLKHFGLIYNFILLGNP---IGA 355 (431)
Q Consensus 292 ~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~~g~---~~~~~~~~~--~~~~---~~~~~g~~~g~~~~~~~---lg~ 355 (431)
.+.++.++.+..... .......+..-...|. ..+....+. .|.. ..++.+....+....+. +.-
T Consensus 83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck 162 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK 162 (432)
T ss_pred HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence 222222222221111 1111111111111111 122222222 1211 12233333444444444 466
Q ss_pred HHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 014047 356 LLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQ 415 (431)
Q Consensus 356 ~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~ 415 (431)
.+ +|++.|.+.+..+ +..+..+.++..+++.++=.++..+..+...
T Consensus 163 ll-aPl~vG~l~t~~s-------------~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P 208 (432)
T PF06963_consen 163 LL-APLFVGLLMTFAS-------------PVIAAIFIAGWNLASVFVEYFLLARVYNSVP 208 (432)
T ss_pred HH-HHHHHHHHhhccC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 66 9999999988776 7788888888888888776665555444433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00015 Score=74.20 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=2.7
Q ss_pred hhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh--------
Q 014047 236 NNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-------- 305 (431)
Q Consensus 236 ~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-------- 305 (431)
..+.++-+.++++.++. +.+.+-++..+..++..++.+|-.|-+. +..+.++++++.++++..+
T Consensus 24 ~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprw------ig~g~~~~~~g~~l~~lPhf~~~~y~~ 97 (539)
T PF03137_consen 24 SSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRW------IGIGALLMGLGSLLFALPHFLSGPYSY 97 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcce------eeecHHHHHHHHHHHhccHhhcCCCcc
Confidence 34566667778887766 8888889999888888888776433222 3555666665555443211
Q ss_pred ------------------------------------h-------hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhh
Q 014047 306 ------------------------------------S-------GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGL 342 (431)
Q Consensus 306 ------------------------------------~-------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~ 342 (431)
. ..++++-++.|+|....+++..+++=|.+++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~spl 177 (539)
T PF03137_consen 98 EEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPL 177 (539)
T ss_dssp ------------------------------------------------------SSS-----------------------
T ss_pred ccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCcc
Confidence 0 123455578899999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHhhhhc---ccC---C---cccccccccHHHHHHHHHHHHHHHHHHHHHHhhch
Q 014047 343 IYNFILLGNPIGALLFSGLLAGKLYDAEAT---KQG---S---STCIGAECFRLTFLVLAGVCGLGTILSIILTIRIR 411 (431)
Q Consensus 343 ~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~---~~~---~---~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 411 (431)
..|+.+.+..+|..+ |=+++|...+.+-. ... + ..-.....|...|.+.+++.++..+..+.+.++.+
T Consensus 178 YiGi~~~~~~lGPa~-Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 178 YIGILYAMSILGPAL-GFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred chhhhhHHhhccHHH-HHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 999999999999988 66666655543211 100 0 11122235777777788777777777766655443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.055 Score=53.97 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhccc-CcchHHHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHhh
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSK-AIPRTVWITCTHIMMILTFLLYASA----------LSGTLYAATVLLGVCYG 321 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~-~~~r~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~G~~~g 321 (431)
....+.++..+||.+..+.. .-.+|. .+ +...+.=++....++++... +.+..++..++.|+..|
T Consensus 312 ~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l---~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 312 CFLLFNLFDWLGRSLTSKFM-WPDEDSRWL---PILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHhhhhheeE-eeCCCccch---HHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 78888999999998665431 112221 11 22223333333333333221 23455667788999999
Q ss_pred hhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 322 VIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
-..+....+.++..+++++-.+..+...+-.+|-.+ |. +.+++
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~-Gs-~l~~~ 430 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLAL-GA-VLSFL 430 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HH-HHHHH
Confidence 888888888888888888877777777777777766 44 33443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0058 Score=59.63 Aligned_cols=138 Identities=14% Similarity=0.058 Sum_probs=86.5
Q ss_pred HHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHh----hhcccCcchHHHHHHHHHH
Q 014047 220 LWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEH----YVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr----~grr~~~~r~~~~~~~~~~ 293 (431)
+....+........=..++++|++++|.+.... +-..-.+...+.+|+.|..||| +||||.+ ..++...
T Consensus 37 v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPf-----I~~~s~~ 111 (498)
T KOG0637|consen 37 VASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPF-----ILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccch-----HHHhhHH
Confidence 333333344444445567899999999987654 4444456677889999999996 7888877 2333333
Q ss_pred HHHHHHHHHhhh---------h----hHHHHHHHHHH-----HHhhhhhhhHHHHHHHhhcCCchhh-HHHHHHHHHHhH
Q 014047 294 MILTFLLYASAL---------S----GTLYAATVLLG-----VCYGVIYSLMVPTASELFGLKHFGL-IYNFILLGNPIG 354 (431)
Q Consensus 294 ~~~~~~~~~~~~---------~----~~~~~~~~l~G-----~~~g~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~lg 354 (431)
..++++++.... . ....+..++.| ++.-...++.=++..|+...+++-+ +.+.......+|
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG 191 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence 334443333211 1 01223333333 4444566777899999997777666 888888888898
Q ss_pred HHHHhhhHH
Q 014047 355 ALLFSGLLA 363 (431)
Q Consensus 355 ~~i~~p~i~ 363 (431)
+.+ |-.++
T Consensus 192 nvL-GY~~g 199 (498)
T KOG0637|consen 192 NVL-GYALG 199 (498)
T ss_pred cee-eeecc
Confidence 888 54333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.006 Score=63.45 Aligned_cols=169 Identities=13% Similarity=0.129 Sum_probs=117.2
Q ss_pred hHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh---------
Q 014047 237 NLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL--------- 305 (431)
Q Consensus 237 ~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~--------- 305 (431)
.+.++=+.++++.+.. +.+.+-+++.+......+..-|..|-+.+ ..+.++++++.++.+..+
T Consensus 119 ~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~I------g~G~~~m~lgsll~alPHf~~~~y~~~ 192 (735)
T KOG3626|consen 119 VITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWI------GIGLVLMGLGSLLFALPHFFSGPYEYE 192 (735)
T ss_pred hhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCcccee------eechhHHHHHHHHHhChHHhcCcchhh
Confidence 4444545668877665 66777788888888887777776655554 566666666555544320
Q ss_pred ----------h--------------------------------h--HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchh
Q 014047 306 ----------S--------------------------------G--TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFG 341 (431)
Q Consensus 306 ----------~--------------------------------~--~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g 341 (431)
+ . .++++-++.|+|--..++...+++=|....++..
T Consensus 193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Sp 272 (735)
T KOG3626|consen 193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSP 272 (735)
T ss_pred hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCc
Confidence 0 0 2234447788888888999999999999888899
Q ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcc-cC-----CcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 014047 342 LIYNFILLGNPIGALLFSGLLAGKLYDAEATK-QG-----SSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRP 412 (431)
Q Consensus 342 ~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~-~~-----~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 412 (431)
...|+.+.+..+|+++ |=++++.....+... .. ...-....+|...|++++.+.++..+..+++.++.++
T Consensus 273 lYlgi~~~~~~lGPai-GfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 273 LYLGILYSMAILGPAI-GFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHHHHHHhhhHH-HHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 9999999999999999 766777666544322 11 1222444568889999999999988888777665443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.01 Score=57.98 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHhh--hh--------hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCc---hhhHHHHHHHHHHhH
Q 014047 288 TCTHIMMILTFLLYASA--LS--------GTLYAATVLLGVCYGVIYSLMVPTASELFGLKH---FGLIYNFILLGNPIG 354 (431)
Q Consensus 288 ~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~lg 354 (431)
.++.++..+|++++... .. ..+++++++.++|.|+.=+...+...|.+++++ +...+...+.+.++|
T Consensus 5 ~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G 84 (372)
T PF00854_consen 5 LLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIG 84 (372)
T ss_dssp HHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhh
Confidence 45566666666663321 11 357888899999999999999999999998663 566777888999999
Q ss_pred HHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 355 ALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 355 ~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
+.+ ++.+.+++-++.+ |.+.|.+.++..+++.++.+.
T Consensus 85 ~~~-~~~~~~~i~~~~~-------------~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 85 SLF-SPTLVPYIQQNYG-------------WFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHH-HHHCCCHHHHCS--------------HHHHHHHHHHHHHHHHHHHHC
T ss_pred hHh-hcccchhhccccc-------------hhhhhhHHHHHHHHHHHHHHh
Confidence 999 7888899988777 999999999888888776544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.38 Score=47.94 Aligned_cols=142 Identities=15% Similarity=0.111 Sum_probs=85.2
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHH---HhCCCcchh---HHHHHHHHHhhhhhhhhHHhHhh---hccc
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV---ALGVNDTTE---LLCLFSLCNFAGRLGSGVLSEHY---VRSK 279 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~---~~s~~~i~~~ig~~~~G~lsDr~---grr~ 279 (431)
.++++++++..+...++..+.....+....|.-.. ..+.+.... ......++..++....+.+++|. |+++
T Consensus 234 ~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~ 313 (461)
T KOG3098|consen 234 FKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKP 313 (461)
T ss_pred HHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCc
Confidence 45667777777776666555444444444554332 223333221 44444566677777777888764 5554
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHh--h--hh---------------hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCch
Q 014047 280 AIPRTVWITCTHIMMILTFLLYAS--A--LS---------------GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHF 340 (431)
Q Consensus 280 ~~~r~~~~~~~~~~~~~~~~~~~~--~--~~---------------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~ 340 (431)
.+ .++..+..+++++.-. . .+ ....+..++.|++-+...+....++...+ ++++
T Consensus 314 ~~------~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~ 386 (461)
T KOG3098|consen 314 TV------LIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDR 386 (461)
T ss_pred ch------hHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCch
Confidence 44 4444333333333211 1 00 13455567888888888888899999998 6888
Q ss_pred hhHHHHHHHHHHhHHHH
Q 014047 341 GLIYNFILLGNPIGALL 357 (431)
Q Consensus 341 g~~~g~~~~~~~lg~~i 357 (431)
..+.++.-.-..+++.+
T Consensus 387 ~~~fsi~kfyq~~~s~v 403 (461)
T KOG3098|consen 387 AQAFSLFKFYQSVASCV 403 (461)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888877777766655
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.081 Score=51.78 Aligned_cols=156 Identities=12% Similarity=0.136 Sum_probs=95.6
Q ss_pred hHHHHHHH--hCCCcchh---HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHH
Q 014047 237 NLAQIGVA--LGVNDTTE---LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-SGTLY 310 (431)
Q Consensus 237 ~l~~~~~~--~g~s~~~~---~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 310 (431)
++.+|+.+ .|++..+. +.-+..=...+.-+....++|.++.|+++ ++..+...+...++...+ -..+-
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpvi------il~~~~~i~t~~lll~~~sv~~mq 98 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVI------ILQALSYIITWLLLLFGTSVLAMQ 98 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHHHHHHCcHHHHH
Confidence 34444443 57776654 22222233445566778999999999776 333333333333333333 34555
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHH
Q 014047 311 AATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFL 390 (431)
Q Consensus 311 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~ 390 (431)
+.-++.|++.+.- ....+++=...++++.-++.+....+..+|..+ +. +.|-+.-..+. ..|...++
T Consensus 99 ~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~~-s~-~lgQllvs~~~----------~sy~~L~~ 165 (412)
T PF01770_consen 99 LMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFI-SS-LLGQLLVSFGG----------VSYFQLNY 165 (412)
T ss_pred HHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHhcC----------CCHHHHHH
Confidence 6667777766654 345566666678888888888888888888777 55 44433333322 22888888
Q ss_pred HHHHHHHHHHHHHHHHHhhch
Q 014047 391 VLAGVCGLGTILSIILTIRIR 411 (431)
Q Consensus 391 ~~~~~~~i~~i~~~~~~~~~~ 411 (431)
+..+...+++++.+++++.++
T Consensus 166 isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 166 ISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 888878888888777665443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.49 E-value=1 Score=44.71 Aligned_cols=155 Identities=12% Similarity=-0.014 Sum_probs=92.8
Q ss_pred CHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchH
Q 014047 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRT 284 (431)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~ 284 (431)
.|+..++.+.|. ..++..+.+.....+...+..|+...|+++... .=+.-.+....|..+..++.+|+|..+.=
T Consensus 251 ~w~~Y~~q~vfl-as~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G--- 326 (432)
T PF06963_consen 251 GWRTYFRQPVFL-ASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAG--- 326 (432)
T ss_pred cHHHHHhCHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH---
Confidence 345566666443 334444444444556677888888889998765 66666777888899999999999976543
Q ss_pred HHHHHHHH---HHHHHHHHHHhhh-h----hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHH
Q 014047 285 VWITCTHI---MMILTFLLYASAL-S----GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGAL 356 (431)
Q Consensus 285 ~~~~~~~~---~~~~~~~~~~~~~-~----~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ 356 (431)
.+...... ..++..++....+ + ..++.+.++.=+|.=++--...-+++|..|.++||+..|.-+...++...
T Consensus 327 ~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~l 406 (432)
T PF06963_consen 327 LWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFEL 406 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHH
Confidence 12222111 1112111111111 1 12222333333444444455567888999999999999999988888777
Q ss_pred HHhhhHHHHHH
Q 014047 357 LFSGLLAGKLY 367 (431)
Q Consensus 357 i~~p~i~g~i~ 367 (431)
+ . .+.+.+.
T Consensus 407 l-~-~~~~ii~ 415 (432)
T PF06963_consen 407 L-S-FVLTIIF 415 (432)
T ss_pred H-H-HHHHhcc
Confidence 6 2 3444444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0095 Score=48.36 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=50.8
Q ss_pred CCCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhhee
Q 014047 2 RNFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60 (431)
Q Consensus 2 ~~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~ 60 (431)
+.+| ++|+++.|+......++..++|.+.+.+.+..+|++.|++.....+++.+..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 3567 6899999999999999999999999999988899999998888777777666643
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.044 Score=40.80 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=53.5
Q ss_pred hhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh
Q 014047 228 VGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL 305 (431)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~ 305 (431)
...-+.+...+|.+.++.++|..+. +.+...++..+|.+...++.++..+++.+ ..+++...+..+.++..+
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~------~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLL------RAGLLLTVLSTAAMALTH 78 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH------HHHHHHHHHHHHHHHHHh
Confidence 3455778899999999999998776 88889999999999999998886555444 555555555555554443
|
Note that many members are hypothetical proteins. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.044 Score=54.47 Aligned_cols=100 Identities=9% Similarity=-0.100 Sum_probs=83.3
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTAS 332 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 332 (431)
...+.....++..++++.+.|+++.|..+ .++........+.+...+.+.+++..++.|+|.+..+.-...+.+
T Consensus 55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~l------v~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt 128 (461)
T KOG3098|consen 55 GQAIIYAFFTVSCLFAPSIVNFLGPKWAL------VIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLT 128 (461)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhHHHHH------HHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehh
Confidence 56677777788889999999999999555 777776666666666667788899999999999999999999999
Q ss_pred HhhcCCchhhHHHHHHHHHHhHHHHH
Q 014047 333 ELFGLKHFGLIYNFILLGNPIGALLF 358 (431)
Q Consensus 333 ~~~~~~~~g~~~g~~~~~~~lg~~i~ 358 (431)
+...++...++.++.......+.+++
T Consensus 129 ~~st~~tie~Nisi~Wai~~~~li~G 154 (461)
T KOG3098|consen 129 SNSTRETIERNISIFWAIGQSSLIIG 154 (461)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHhh
Confidence 99988999999999888887777773
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.95 Score=43.11 Aligned_cols=141 Identities=15% Similarity=0.174 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTA 331 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~ 331 (431)
.=.+..+.++++.++.|.+.-.+.|..-+ .+.++.+..+...+++...+ .+..++..++...-+....++....+
T Consensus 276 veAv~tlLGa~~~~~~g~l~i~w~r~g~~----ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~i 351 (433)
T KOG3810|consen 276 VEAVSTLLGAIAALAAGYLNINWNRWGDL----LLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQI 351 (433)
T ss_pred HHHHHHHHHHHHHHHHHheeeccchhhHH----HHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence 44555667778888899987776665333 33444444444444444333 35667777888888888878877778
Q ss_pred HHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCC-cccccccccHHHHHHHHHHHHHHHHHHH
Q 014047 332 SELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGS-STCIGAECFRLTFLVLAGVCGLGTILSI 404 (431)
Q Consensus 332 ~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 404 (431)
++....+..|...|+......+-+.+. .-.+.|..|-.... .+..- |..=|.+.+++.+++..+.+
T Consensus 352 A~nL~~e~~gLvFGiNTFvAl~lQsil----T~iVvd~~g~~L~ir~Q~~~---Y~~Yf~v~~~i~~~~~~~~~ 418 (433)
T KOG3810|consen 352 ARNLSSELFGLVFGINTFVALILQSIL----TLIVVDDRGLGLDIRTQFVV---YSSYFIVLGVIFLIGFGIEY 418 (433)
T ss_pred HHhhhhhhheeeeehHHHHHHHHHHhh----eEEEEcccccCCCcceeEEE---EeehHHHHHHHHHHHHHHHH
Confidence 887778888999988776655555552 22233433221110 01111 22336666777666655543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.023 Score=56.65 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=43.9
Q ss_pred HHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCc
Q 014047 232 VTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAI 281 (431)
Q Consensus 232 ~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~ 281 (431)
..+...++.|.+++|+++.+. ++..-.+..+++.|++|+++||+.+|+..
T Consensus 28 g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~l 79 (618)
T KOG3762|consen 28 GSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPL 79 (618)
T ss_pred cccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCch
Confidence 456678899999999999886 77778899999999999999999888877
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=94.32 E-value=3.5 Score=37.73 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=39.1
Q ss_pred CCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh----CCC------cch-----h-HHHHHHHHHhhhhhhhh
Q 014047 206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL----GVN------DTT-----E-LLCLFSLCNFAGRLGSG 269 (431)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~s------~~~-----~-~~s~~~i~~~ig~~~~G 269 (431)
.+..+.+|+++.|...+.+.+.-... +....+....++ +.+ ... . ...++..+..+|.+..|
T Consensus 85 ~s~~~~LK~K~tw~w~~~Yg~wLv~~--V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~g~~~G~~~ig 162 (267)
T PF07672_consen 85 PSYKSILKEKETWKWILIYGIWLVVV--VFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILFVAGYFLGPFTIG 162 (267)
T ss_pred chHHHHHccchHHHHHHHHHHHheeE--EEeccchhHhHhhhcCcccccccccccccchhhHHHHHHHHHHHhhhceeec
Confidence 45688999999888776665432211 112112222211 111 111 1 44555566678888888
Q ss_pred HHhHhhhcccCc
Q 014047 270 VLSEHYVRSKAI 281 (431)
Q Consensus 270 ~lsDr~grr~~~ 281 (431)
..+..--+|+.+
T Consensus 163 ~~nkt~~kRk~f 174 (267)
T PF07672_consen 163 LWNKTNYKRKPF 174 (267)
T ss_pred cchhhhhhhhhH
Confidence 887654444443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.99 E-value=2.2 Score=41.63 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=60.3
Q ss_pred HHHH-HHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHhhhhh
Q 014047 253 LLCL-FSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYA-------SALSGTLYAATVLLGVCYGVIY 324 (431)
Q Consensus 253 ~~s~-~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~G~~~g~~~ 324 (431)
.... +.+...+|++.+.++-+.= ||... +..+.=.+....+.++- +.+.++.++...++|+..|-..
T Consensus 287 ~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~----i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt 361 (406)
T KOG1479|consen 287 LVFLSFNVFDLIGSILAALLTWPD-PRKLT----IPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT 361 (406)
T ss_pred HHHHHhHHHHHhhhhhhhcccCCC-Cceeh----HHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence 4444 7889999988887775543 33332 12222233333332221 2234567777888899888887
Q ss_pred hhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHH
Q 014047 325 SLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKL 366 (431)
Q Consensus 325 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i 366 (431)
+....+.++.++++.+-.+-.+....-..|-.. |. +.+++
T Consensus 362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~-G~-~~s~l 401 (406)
T KOG1479|consen 362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLAL-GS-LLSWV 401 (406)
T ss_pred hheehhcCCCCChHHHHHHHHHHHHHHHHHHHH-hh-HHHHH
Confidence 777778877777665544444444443344443 43 44443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.018 Score=54.78 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=3.5
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhh-hcccCcchHHHHHHHHHHHHHHHHHHH-----------hhhhhHHHHHHHHHHHHh
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHY-VRSKAIPRTVWITCTHIMMILTFLLYA-----------SALSGTLYAATVLLGVCY 320 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~-grr~~~~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~G~~~ 320 (431)
....+.++..+||.+.++.-=+. .+|+.. ...+.=+++...++++. +.+.+..++..+++|+..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~----~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TN 262 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW----ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTN 262 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH----HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHcc
Confidence 56778999999999988742110 223222 11111122222222221 122345566678889999
Q ss_pred hhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 321 GVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 321 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
|-..+....+.++..+++.+-.+..+....-.+|-.+
T Consensus 263 Gyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~ 299 (309)
T PF01733_consen 263 GYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFI 299 (309)
T ss_dssp ----HHHH-----------------------------
T ss_pred chhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888888899888888877766666666666665
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.58 E-value=3.8 Score=40.06 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=50.7
Q ss_pred hhHHHHHhhHHHHHHHh-CCCcchhHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh-hh-
Q 014047 229 GAGVTVLNNLAQIGVAL-GVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS-AL- 305 (431)
Q Consensus 229 ~~~~~~~~~l~~~~~~~-g~s~~~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~-~~- 305 (431)
...-++++..+++.+.+ +.+.+..+...+.+.+.+...+.-.+--+...|......+.+....++..+.+.+... ..
T Consensus 32 lpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~~~~v~~~~ 111 (406)
T KOG1479|consen 32 LPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLDLALVKTDT 111 (406)
T ss_pred cchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 34445666677777766 5555332445555555444445445444444441111011112222222112111111 11
Q ss_pred -h----hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchh
Q 014047 306 -S----GTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFG 341 (431)
Q Consensus 306 -~----~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g 341 (431)
. ...++..++.+++.|...+......++ +|++...
T Consensus 112 ~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytq 151 (406)
T KOG1479|consen 112 WTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQ 151 (406)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHH
Confidence 1 123444466677777776666666654 5666543
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.1 Score=46.25 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=96.7
Q ss_pred hhhhHHHHHhhHHHHHH-HhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhh-hcccCcchHHHHHHHHHHHHHHHHHHH
Q 014047 227 GVGAGVTVLNNLAQIGV-ALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHY-VRSKAIPRTVWITCTHIMMILTFLLYA 302 (431)
Q Consensus 227 ~~~~~~~~~~~l~~~~~-~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~-grr~~~~r~~~~~~~~~~~~~~~~~~~ 302 (431)
-..+.++...++-.|+. .++.+...+ .+..+.-......+.+++++|-+ ||-+.+ .++.++..++..++.
T Consensus 49 e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI------~~~s~i~~~G~~~lt 122 (571)
T KOG1237|consen 49 ERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTI------NIGSLISLLGLFGLT 122 (571)
T ss_pred HHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHH
Confidence 33444444455555554 556665544 77777777788889999999986 555443 333333333322211
Q ss_pred hh--------------------h-h-----hHHHHHHHHHHHHhhhhhhhHHHHHHHhhc---CCc-hh--hHHHHHHHH
Q 014047 303 SA--------------------L-S-----GTLYAATVLLGVCYGVIYSLMVPTASELFG---LKH-FG--LIYNFILLG 350 (431)
Q Consensus 303 ~~--------------------~-~-----~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~---~~~-~g--~~~g~~~~~ 350 (431)
.. . + ..++..+-+..+|.|+.-+...+.-+|-|+ ++. +. .-....+..
T Consensus 123 ~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~ 202 (571)
T KOG1237|consen 123 LSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFS 202 (571)
T ss_pred HHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHH
Confidence 10 0 0 134555566777888888888888888887 222 22 334445566
Q ss_pred HHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 351 NPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 351 ~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
.++|..+ +-.+.-++-+..+ |...|.+..++.+++.++.+.
T Consensus 203 ~~~g~l~-a~t~~vyiq~~~~-------------w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 203 QNGGALL-AQTVLVYIQDNVG-------------WKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred HHHHHHH-HHHHHHhhhhccc-------------ceeeccHHHHHHHHHHHHHHc
Confidence 6777777 5445555545544 999999888888877666544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.4 Score=41.03 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh-HHHHHHHHHhhhhhhhhHHhH-----hhhcccCcchHHHHHHHH
Q 014047 218 WLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE-LLCLFSLCNFAGRLGSGVLSE-----HYVRSKAIPRTVWITCTH 291 (431)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~-~~s~~~i~~~ig~~~~G~lsD-----r~grr~~~~r~~~~~~~~ 291 (431)
..+.+.+. ..+.=.+....+|.+++..|.|-++. ..+...-.. --.++|.++.| |+|||+.. + .=.+
T Consensus 34 llLl~LYl-lQGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P~-sLKllWaPiVDs~y~k~~GrrksW----v-vp~q 106 (510)
T KOG3574|consen 34 LLLLFLYL-LQGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSW----V-VPCQ 106 (510)
T ss_pred HHHHHHHH-HcCCchhHhhhhHHHhcCCCcchhhhhhhhhhhhHH-HHHHHHHhhhHHHHHHhhccccce----e-eehH
Confidence 33333333 34444556669999999777765433 222222111 23578889999 99998764 1 1122
Q ss_pred HHHHHHHHHHHhhh----------hh--HHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 292 IMMILTFLLYASAL----------SG--TLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 292 ~~~~~~~~~~~~~~----------~~--~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
.+....+++++... +. .+....++.-+..+.---..-...-.+..+++.|.+......+...|.++
T Consensus 107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL 184 (510)
T KOG3574|consen 107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL 184 (510)
T ss_pred HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence 22222222332211 11 11111122222222222223344445567788887776666666666666
|
|
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=92.76 E-value=7.6 Score=37.99 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=35.2
Q ss_pred CCCCCCCCchhhhhhhhhhhhHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHhhhhee
Q 014047 2 RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQN--SATTLLLFLALGIPLICLVTTYFI 60 (431)
Q Consensus 2 ~~fp~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~--~~~~~~~~l~~~~~~v~~~~~~~~ 60 (431)
+.|+++..+.++-+.-.+.+=+.++..+....... ..|.++....+...+++.+..+.+
T Consensus 23 ~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (385)
T PF03547_consen 23 GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLGFLL 83 (385)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666777777777888888888888855322 334444444444444444444433
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=92.63 E-value=4.2 Score=41.24 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=35.1
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHh
Q 014047 326 LMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYD 368 (431)
Q Consensus 326 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~ 368 (431)
..+....|.+..++..+-+++..++.++|..+ +..+..++.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~-sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIF-SGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 46888899999999999999999999999998 5556666655
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.6 Score=40.12 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=42.2
Q ss_pred hhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhhhhhhHHH-HHHHhhcCC
Q 014047 262 FAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALS--GTLYAATVLLGVCYGVIYSLMVP-TASELFGLK 338 (431)
Q Consensus 262 ~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~g~~~~~~~~-~~~~~~~~~ 338 (431)
++...+.|-|.||-|||+.- +...+...+.++- -.++ ..+.+++++-|+.....++..-+ ++.|...++
T Consensus 86 mLFGtivgSLaDkqGRKrac------vtycitYiLsCiT--KhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr 157 (454)
T KOG4332|consen 86 MLFGTIVGSLADKQGRKRAC------VTYCITYILSCIT--KHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKR 157 (454)
T ss_pred HHHHHHHHHHHhhhccccce------eeehHHHHHHHHh--hcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence 44556778999999999865 2222222222211 1222 36788899999999888876655 456665333
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=89.02 E-value=28 Score=35.24 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=35.9
Q ss_pred hhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 322 VIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
..+....+.-+.+..|..-|+.+.+.|+..++|+.- -..+.=++.|..
T Consensus 421 vmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtW-P~~~vL~lVD~f 468 (544)
T PF13000_consen 421 VMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTW-PRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCc-hHHHHHHHhhhc
Confidence 344555566677777888999999999999999987 555666677764
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.79 E-value=33 Score=34.58 Aligned_cols=42 Identities=29% Similarity=0.325 Sum_probs=33.7
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHh
Q 014047 326 LMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYD 368 (431)
Q Consensus 326 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~ 368 (431)
+.+....|....++..+-+++.+++.+++..+ +..+.+++..
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lll-sg~~~~~~~k 209 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLL-SGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 56777788888888899999999999999888 4446666654
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.85 E-value=4.3 Score=39.38 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=37.1
Q ss_pred hhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhh
Q 014047 324 YSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEA 371 (431)
Q Consensus 324 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~ 371 (431)
+....+..+++.+|..-|+.+.+.++..++|+.- -..+..++.|...
T Consensus 387 fv~~maf~aqisdp~iggTymTlLNTLsnLGg~w-p~tv~l~l~D~lt 433 (510)
T KOG3574|consen 387 FVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNW-PGTVALWLADGLT 433 (510)
T ss_pred HHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCc-HHHHHHHhcccCc
Confidence 3445566778888899999999999999999887 4457788887654
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=86.04 E-value=16 Score=35.96 Aligned_cols=126 Identities=15% Similarity=0.029 Sum_probs=65.3
Q ss_pred HHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Q 014047 257 FSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALS-GTLYAATVLLGVCYGVIYSLMVPTASELF 335 (431)
Q Consensus 257 ~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 335 (431)
-.+...+..+++.+..+|+..+... .+..++..+++++.++..+ +.-+++.++.+++.|..-...-++ ...+
T Consensus 68 di~P~l~~Kl~aP~fi~~v~y~~Ri------~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 68 DILPSLLVKLIAPFFIHRVPYWIRI------LICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred HHHHHHHHHHHhHhhhhhccchHHH------HHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 3456666677777777766433222 4444555666666665433 445666677777776654444444 3456
Q ss_pred cCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 336 GLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 336 ~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
++.. .+-...+...++.+ |+...-.+-+ .+ -..|.++.++..+.++-.+..+++
T Consensus 141 ~~~~----l~~wssGTG~aGl~-Ga~~y~~lT~-~g-----------~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 141 GKSS----LSAWSSGTGGAGLV-GALYYLGLTT-LG-----------LSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred Cccc----cccccCCcChhhHH-HHHHHHHHHH-hC-----------cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5432 23333344444444 4433333333 32 115667777666654443333333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=84.89 E-value=24 Score=35.29 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHH
Q 014047 310 YAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALL 357 (431)
Q Consensus 310 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 357 (431)
++..++.|++.+...+...++.+ .+|++. .+....+.++++.+
T Consensus 110 ~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~ 152 (437)
T TIGR00939 110 MASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVL 152 (437)
T ss_pred HHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHH
Confidence 34445667777777666666665 566543 33334444444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 431 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 9e-06 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 9e-06
Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 28/204 (13%)
Query: 208 LGEAFVKADFWLL--WFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGR 265
+ FV + + W +L L + A L+ G
Sbjct: 259 IANVFVYLLRYGILDWSPTYLKEVKHF----ALDKSSWAYF---------LYEYAGIPGT 305
Query: 266 LGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYS 325
L G +S+ R V+ + + + + + +++G
Sbjct: 306 LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVM 365
Query: 326 LMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECF 385
L+ A EL K G F L +G + + + G G
Sbjct: 366 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT----VDFFGWDG------- 414
Query: 386 RLTFLVLAGVCGLGTILSIILTIR 409
F+V+ G L IL I++ I
Sbjct: 415 --GFMVMIGGSILAVILLIVVMIG 436
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 431 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.88 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.82 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.75 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.71 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.68 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.66 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.62 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.6 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.59 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.56 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.52 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.42 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.26 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.17 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=194.15 Aligned_cols=181 Identities=16% Similarity=0.126 Sum_probs=146.3
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhh--hcccCcch
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHY--VRSKAIPR 283 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~--grr~~~~r 283 (431)
++.+|++.+|...+..++.......+..++|.++++ +|++.... ..++..++..+++++.|+++||+ +||+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-- 323 (451)
T 1pw4_A 246 QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT-- 323 (451)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH--
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH--
Confidence 567889999999999888888888888999999987 58887654 78888999999999999999999 887654
Q ss_pred HHHHHHHHHHHH-HHHHHHHhh---hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHh-HHHHH
Q 014047 284 TVWITCTHIMMI-LTFLLYASA---LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPI-GALLF 358 (431)
Q Consensus 284 ~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~ 358 (431)
.++..+.. ++++.+... +.....+..++.|++.+...+....++.|.+|++++|++.|+.+....+ |..+
T Consensus 324 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~- 398 (451)
T 1pw4_A 324 ----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA- 398 (451)
T ss_dssp ----HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred ----HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH-
Confidence 33333333 444444332 2234566667888888888888889999999999999999999999999 9999
Q ss_pred hhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 359 SGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 359 ~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
+|.+.|.+.|..+ |+..|++.+++.+++.++.++..++
T Consensus 399 ~~~~~g~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 399 ASAIVGYTVDFFG-------------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHSSC-------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-------------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999876 9999999998888887776665443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-19 Score=175.85 Aligned_cols=172 Identities=17% Similarity=0.144 Sum_probs=135.1
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHH-HHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
+++++|++.+|...+..++.......+..++|.| .++. |++.... ..++..++..+++++.|+++||+|||+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~-- 328 (438)
T 3o7q_A 251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL-- 328 (438)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence 3678899999999999888888888888999999 8876 8887665 77788899999999999999999998765
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH
Q 014047 284 TVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
..+.++..++++++...+.....+..++.|++.+..++...++..|.+|++ ++.+.++.. ...+|..+ +|.+.
T Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~-~~~~~ 401 (438)
T 3o7q_A 329 ----AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI-VTPVM 401 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH-HHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHH-HHHHH
Confidence 555555555555555444444455567888999989999999989999866 888888777 55688888 89999
Q ss_pred HHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHH
Q 014047 364 GKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGT 400 (431)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~ 400 (431)
|.+.|..++ |+..|++.+++.++..
T Consensus 402 g~l~~~~g~------------~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 402 GFVSDAAGN------------IPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHTS------------SGGGGHHHHHHHHHHH
T ss_pred HHHHHHhcc------------hHHHHHHHHHHHHHHH
Confidence 999998874 7778887655544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-17 Score=161.68 Aligned_cols=179 Identities=14% Similarity=0.023 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCc--chhHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHH
Q 014047 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~--~~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~ 293 (431)
.+.+++..++...........+|.+.++. +.+. .....+...++..++.++.|+++||++||+.... ..+..+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~-~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP-TKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch-HHHHHHHHH
Confidence 33444444444444445666778888764 6552 2236777888888999999999999999876421 222344444
Q ss_pred HHHHHHHHHhh----------hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH
Q 014047 294 MILTFLLYASA----------LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 294 ~~~~~~~~~~~----------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
..+++.++... +.....+..++.|++.+...+....++.|.+|++.||++.|+.+....+|..+ +|.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~~~ 442 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQLV 442 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHHHG
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44554443321 22355666788899998888889999999999999999999999999999999 78788
Q ss_pred HHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhch
Q 014047 364 GKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIR 411 (431)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 411 (431)
+.+.+. + +...|++.+++++++.++.+++.++.+
T Consensus 443 ~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 443 TLYNAK-S-------------EVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp GGGGGS-S-------------TTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHhcc-c-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777653 2 677888888888777776666544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-17 Score=160.13 Aligned_cols=179 Identities=14% Similarity=0.097 Sum_probs=129.2
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCC---cch--hHHHHHHHHHhhhhhhhhHHhHhhhcccCcc
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVN---DTT--ELLCLFSLCNFAGRLGSGVLSEHYVRSKAIP 282 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s---~~~--~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~ 282 (431)
++.+|++.+|...+..++.......+..++|.++++. +.. ... ...++..++..++.++.|+++||+|||+.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l- 292 (417)
T 2cfq_A 214 LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL- 292 (417)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-
T ss_pred HHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH-
Confidence 5678888888877665555444445556788887664 321 111 155566678889999999999999998765
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHH-HHHHHhHHHHHhh
Q 014047 283 RTVWITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFI-LLGNPIGALLFSG 360 (431)
Q Consensus 283 r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~lg~~i~~p 360 (431)
..+.++.++..+.+...+ ...+++..++.+++.+...+....+++|.+|++.||+++++. +....+|+.+ +|
T Consensus 293 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-gp 366 (417)
T 2cfq_A 293 -----LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-MS 366 (417)
T ss_dssp -----HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-HT
T ss_pred -----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-hh
Confidence 445555555544444333 234445556667777766677788999999999999999995 7888899999 89
Q ss_pred hHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 361 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 361 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
.+.|.+++..+ |+..|.+.+++++++.++.+...
T Consensus 367 ~l~G~l~~~~g-------------~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 367 VLAGNMYESIG-------------FQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHTHHHHSH-------------HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhHHHHHHhcC-------------cHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999776 88899988888888776655433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-15 Score=151.14 Aligned_cols=174 Identities=7% Similarity=-0.015 Sum_probs=115.0
Q ss_pred hhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh--
Q 014047 228 VGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS-- 303 (431)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~-- 303 (431)
......+..+.+.+.+..+.+.... ...+..+...++.++++++.||+|||+.+ ..+...+.++++.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~------~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 290 FVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh------ccchHHHHHHHHHHHHHH
Confidence 3344456667777777777665544 55667788899999999999999999766 3333333333333221
Q ss_pred -hh-h-hHHHHHHHHHHHHhhh-hhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccc
Q 014047 304 -AL-S-GTLYAATVLLGVCYGV-IYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTC 379 (431)
Q Consensus 304 -~~-~-~~~~~~~~l~G~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~ 379 (431)
.. . ...++..++...+++. ..+..+.+.+|+||++.|+++.|+.+....+++.+ ++.+...+.+.....
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~~p~l~~~~~~~------ 436 (491)
T 4gc0_A 364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWTFPMMDKNSWLV------ 436 (491)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTHHHHHCHHHHHH------
T ss_pred hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH------
Confidence 11 1 2222223333333333 33566789999999999999999999999999988 777776665432100
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 014047 380 IGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQ 415 (431)
Q Consensus 380 ~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~ 415 (431)
...++..+|++.+++++++.++.+++.+|+|.+..
T Consensus 437 -~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 437 -AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp -HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred -hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 00115567888888999998888888888876644
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=153.42 Aligned_cols=241 Identities=13% Similarity=0.007 Sum_probs=174.2
Q ss_pred CCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHHH
Q 014047 3 NFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQ 81 (431)
Q Consensus 3 ~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (431)
.+| ++|+++.|+.....++|..++|.+++.+.+..+||+.|++.....++..+...+ ..|+++++ ++ +
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~-~------- 184 (375)
T 2gfp_A 116 LYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR--WMPETRPV-DA-P------- 184 (375)
T ss_dssp HHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCC--SSCCCSTT-TC-C-------
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--HCcccCCC-Cc-c-------
Confidence 355 799999999999999999999999999988889999999887777766664442 22221100 00 0
Q ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCCC
Q 014047 82 AASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPL 161 (431)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 161 (431)
.++
T Consensus 185 ---------------------------------------------------------------------------~~~-- 187 (375)
T 2gfp_A 185 ---------------------------------------------------------------------------RTR-- 187 (375)
T ss_dssp ---------------------------------------------------------------------------CCC--
T ss_pred ---------------------------------------------------------------------------ccc--
Confidence 000
Q ss_pred CCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHH
Q 014047 162 LTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241 (431)
Q Consensus 162 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (431)
...++++.+|+|.+|...+..++.......+..+.|.+
T Consensus 188 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (375)
T 2gfp_A 188 ------------------------------------------LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVL 225 (375)
T ss_dssp ------------------------------------------TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCS
T ss_pred ------------------------------------------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112678899999999988888887777888888888
Q ss_pred HHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHH
Q 014047 242 GVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS---ALSGTLYAATVL 315 (431)
Q Consensus 242 ~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l 315 (431)
.++ +|.+.... ..+...++..+++++.|+++||++++... ............+.... .+...+++..++
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (375)
T 2gfp_A 226 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ-----SVICCLLAGLLMWIPDWFGVMNVWTLLVPAAL 300 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHH-----HHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 876 58776554 77788899999999999999999873111 11110111111111111 122345566788
Q ss_pred HHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHH
Q 014047 316 LGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLA 393 (431)
Q Consensus 316 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~ 393 (431)
.|++.+...+...+++.|.+| +++|++.|+.+....+|..+ +|.+.|.+.+..+ |...+++.+
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~~-------------~~~~~~~~~ 363 (375)
T 2gfp_A 301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV-LASLSAMLPQTGQ-------------GSLGLLMTL 363 (375)
T ss_dssp HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHC-CSTTCTHHHHHHH-------------HHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHH-HHHHHHHHhcCCc-------------ccHHHHHHH
Confidence 899999999999999999998 89999999999999999999 8889999988765 777776543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=150.01 Aligned_cols=177 Identities=12% Similarity=0.004 Sum_probs=141.6
Q ss_pred hhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHH
Q 014047 213 VKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCT 290 (431)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~ 290 (431)
+.+.++...+..++.......+...+|.+.+++ .+..+. +.+...++..++.+++|+++||+|||+.+ .++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH------HHH
Confidence 344555666666655555555667788888888 776654 88899999999999999999999999776 666
Q ss_pred HHHHHHHHHHHHh----hh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 291 HIMMILTFLLYAS----AL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 291 ~~~~~~~~~~~~~----~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
.++.+++.++++. .+ ...+++.+++.|++.+...+...+++.|.+|+++|+++.|+.+.+..+|..+ +|.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~ 177 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 6666677666655 43 3567788899999999999999999999999999999999999999999999 8989988
Q ss_pred HHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 366 LYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 366 i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
+.+..++ ||++|++.++++++..++.++..++
T Consensus 178 l~~~~g~------------w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 178 GMAWFND------------WHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp HHHHTCC------------STTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhcc------------HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 8876543 9999999888887776665555444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-14 Score=142.52 Aligned_cols=173 Identities=12% Similarity=0.191 Sum_probs=142.5
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHHH------hCCCcchh--HHHHHHHHHhhhhhhhhHHhHh-hhcccCcchHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVA------LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEH-YVRSKAIPRTV 285 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr-~grr~~~~r~~ 285 (431)
+.+|.+.+..++.....+.+..+++.++++ +|.+.... ..+.+.++..++.+++|+++|| +|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~---- 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV---- 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH----
Confidence 356777777777777777777788887765 78887665 8889999999999999999999 8999877
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCc--hhhHHHHHHHHHHhHHHHHhhhH
Q 014047 286 WITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKH--FGLIYNFILLGNPIGALLFSGLL 362 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~i~~p~i 362 (431)
..+.++..++.++++..+ ...+++.+++.|++.|...+...+++.|.+|+++ |+.+.++.+.+..+|..+ +|.+
T Consensus 89 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~ 165 (491)
T 4aps_A 89 --FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLI 165 (491)
T ss_dssp --HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred --HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHH
Confidence 666777777776666554 3567888899999999999999999999999988 778888899999999999 8999
Q ss_pred HHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 363 AGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 363 ~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
++.+.+..+ |++.|++.+++.+++.++.++..
T Consensus 166 ~~~l~~~~g-------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 166 VGAAQEAAG-------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHSC-------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh-------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 999998876 99999998887777766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=142.23 Aligned_cols=182 Identities=15% Similarity=0.158 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHH
Q 014047 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMM 294 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~ 294 (431)
++.+.+.+++...........+|.+.+++|.+..+. +.+...++..++.+++|+++||+|||+.+ .++.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~ 101 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH------HHHHHHH
Confidence 344444455455555566677888888999998765 88999999999999999999999999877 6666666
Q ss_pred HHHHHHH---Hhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 295 ILTFLLY---ASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 295 ~~~~~~~---~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
+++.++. ...+ .+.+++.+++.|++.|...+...+++.|.+|+++|+.+.++.+.+..+|..+ +|.+++.+.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~ 180 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHHHTS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 6666555 4433 3567788899999999999999999999999999999999999999999999 888888887332
Q ss_pred hcccCC-------------cccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 371 ATKQGS-------------STCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 371 ~~~~~~-------------~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
....++ .......+|++.|++.+++.++..++.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 210000 00000012889998777766665554433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-14 Score=137.52 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=136.0
Q ss_pred HHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHH
Q 014047 219 LLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMIL 296 (431)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~ 296 (431)
.+.+..++.......+...+|.+.+++|.+..+. ..+...++..++.+++|+++||+|||+.+ ..+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence 3445555555566667777888888889887765 88899999999999999999999999998 666666666
Q ss_pred HHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccC
Q 014047 297 TFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQG 375 (431)
Q Consensus 297 ~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~ 375 (431)
+.+.....+ ...+++.+++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+ +|.+.+.+.+..+
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~---- 152 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN---- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc----
Confidence 666555444 3567778899999999999999999999999999999999999999999999 8989999888776
Q ss_pred CcccccccccHHHHHHHHHHHHHHHHHHH
Q 014047 376 SSTCIGAECFRLTFLVLAGVCGLGTILSI 404 (431)
Q Consensus 376 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 404 (431)
|++.|++.+++.++..+...
T Consensus 153 ---------~~~~~~~~~~~~~~~~~~~~ 172 (375)
T 2gfp_A 153 ---------WRACYLFLLVLCAGVTFSMA 172 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHCCCC
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH
Confidence 99999988877776655333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-14 Score=140.37 Aligned_cols=172 Identities=12% Similarity=0.072 Sum_probs=137.3
Q ss_pred hHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hC------CCcchh--HHHHHHHHHhhhhhhhhHHhHhh-hcccCcch
Q 014047 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LG------VNDTTE--LLCLFSLCNFAGRLGSGVLSEHY-VRSKAIPR 283 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~-grr~~~~r 283 (431)
.+.+|.+.+..++.....+....+++.++++ +| .+.... +.+.+.++..++.+++|+++||+ |||+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~-- 88 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI-- 88 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH--
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence 3456777777777777777788888887764 58 777665 88889999999999999999999 999776
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHH---HHHHHHhHHHHH
Q 014047 284 TVWITCTHIMMILTFLLYASAL--SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNF---ILLGNPIGALLF 358 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~lg~~i~ 358 (431)
.++.++..++.+++...+ ...+++.+++.|++.|...+...+++.|.+|+++|++..++ .+.+..+|..+
T Consensus 89 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~- 163 (524)
T 2xut_A 89 ----LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF- 163 (524)
T ss_dssp ----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-
T ss_pred ----HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-
Confidence 566666666666655543 35677778999999999999999999999999999876666 88889999999
Q ss_pred hhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 359 SGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 359 ~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
+|.+.+.+.+..+ |++.|++.+++.+++.++.++
T Consensus 164 g~~~~~~l~~~~g-------------~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 164 ASLSMPLLLKNFG-------------AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHTSTHHHHTSC-------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcccc-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 8889999988766 999999988877766655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.5e-13 Score=134.22 Aligned_cols=153 Identities=13% Similarity=-0.003 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhhhhhhhHHh----HhhhcccCcchHHHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLS----EHYVRSKAIPRTVWITCTHIMMILTFLLYASA----------LSGTLYAATVLLGV 318 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~ls----Dr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~G~ 318 (431)
..+...++..++.++.+++. ||.++|.... ..+.++.++.+++++.+... +...+++..++.|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 340 MQALNPLLVMLLIPFNNFVLYPAIERMGVKLTAL--RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHTTSGGGHHHHGGGTTTC------------CCH--HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 44444455566666666654 4444332211 12244555555555544331 22345666788899
Q ss_pred HhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccccccccc-HHHHHHHHHHHH
Q 014047 319 CYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECF-RLTFLVLAGVCG 397 (431)
Q Consensus 319 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~ 397 (431)
+.+...+...+++.|.+|++.+|++.|+.++...+|+.+ +|.+.|.+.+..+.... .. ...+. +..|++.+++++
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~~~g~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~ 493 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLW-VLLANVSVKSPTVTEQI--VQ-TGMSVTAFQMFFFAGFAI 493 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHH-HHHHHHHTTSCHHHHHH--HH-HHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhccccccccc--cc-ccccccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 89899988874320000 00 00001 334777777777
Q ss_pred HHHHHHHHHHhhch
Q 014047 398 LGTILSIILTIRIR 411 (431)
Q Consensus 398 i~~i~~~~~~~~~~ 411 (431)
++.++.+++.++.+
T Consensus 494 ~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 494 LAAIVFALYARSYQ 507 (524)
T ss_dssp HHHHHHC-------
T ss_pred HHHHHHHHHHHHhc
Confidence 77666555544443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.3e-11 Score=119.68 Aligned_cols=138 Identities=14% Similarity=0.088 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh-------------------hhhhHHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS-------------------ALSGTLYAAT 313 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 313 (431)
+.+.+.++.++|.+++|+++||+|||+.+ .++.+++.++.++.++ .+...+++.+
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~~l------~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 67788899999999999999999999877 6666666666655542 2235688899
Q ss_pred HHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHH
Q 014047 314 VLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLA 393 (431)
Q Consensus 314 ~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~ 393 (431)
++.|++.|+..+..+.+++|..|++.|+...++.+.+..+|..+ ++.+...+....+. .......|+..+.+..
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 207 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNYFIARSGDA-----SWLNTDGWRYMFASEC 207 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSCT-----TTTTTTHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcchhhcccccc-----ccccchhhHHHhhhhh
Confidence 99999999999999999999999999999999999999998888 66454444433221 0111233777766655
Q ss_pred HHHHHHHHH
Q 014047 394 GVCGLGTIL 402 (431)
Q Consensus 394 ~~~~i~~i~ 402 (431)
+..++..+.
T Consensus 208 ~~~~~~~~~ 216 (491)
T 4gc0_A 208 IPALLFLML 216 (491)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhh
Confidence 555444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-12 Score=124.42 Aligned_cols=169 Identities=11% Similarity=0.169 Sum_probs=110.4
Q ss_pred HHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
+.+|++++|.+....++.......+...+|.++++ +|.+..+. +.+...++..++++++|+++||+|||+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l----- 76 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL----- 76 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH-----
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-----
Confidence 35789999998888777766666777889998876 68887665 88888999999999999999999999887
Q ss_pred HHHHHHHHHH---HHHHHHhhhh--hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC--CchhhHHHHHHHHHHhHHHHHh
Q 014047 287 ITCTHIMMIL---TFLLYASALS--GTLYAATVLLGVCYGVIYSLMVPTASELFGL--KHFGLIYNFILLGNPIGALLFS 359 (431)
Q Consensus 287 ~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~lg~~i~~ 359 (431)
..+..+..+ .+........ ...+...++.|++.|..++.....+.+..+. +.++..+|.......+|..+ +
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~ 154 (417)
T 2cfq_A 77 -LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL-G 154 (417)
T ss_dssp -HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHH-H
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH-H
Confidence 333332221 1111111110 1112223333443443333323333333221 45677788888888899988 8
Q ss_pred hhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHH
Q 014047 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLG 399 (431)
Q Consensus 360 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~ 399 (431)
|.+++++.+. + |+..|++.++..++.
T Consensus 155 ~~l~~~l~~~-~-------------~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 155 ASIVGIMFTI-N-------------NQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHHH-C-------------SHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHh-c-------------hhHHHHHHHHHHHHH
Confidence 8899988763 4 899998766654433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 431 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.84 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.69 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.6 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.33 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=2.4e-19 Score=174.65 Aligned_cols=191 Identities=15% Similarity=0.098 Sum_probs=143.7
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchH
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRT 284 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~ 284 (431)
.++.++++.+|......++.....+....+.|.++++. +.+.... ..++..++..++++++|+++||++|++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 318 (447)
T d1pw4a_ 242 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--- 318 (447)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH---
T ss_pred HHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc---
Confidence 35677899999999998888888888889999988765 7776654 78888899999999999999999987644
Q ss_pred HHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhh
Q 014047 285 VWITCTHIMMILTFLLYASA---LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGL 361 (431)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~ 361 (431)
........+..++...+... +....++..++.|++.++..+....+..|.+|++.+|++.|+.+....+++.+.+|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~ 398 (447)
T d1pw4a_ 319 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222211 123455666777888888888888999999999999999999998888765554898
Q ss_pred HHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 014047 362 LAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVY 414 (431)
Q Consensus 362 i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~ 414 (431)
+.|.+.|..+ |+..|++.+++++++.++..++..+++|+.
T Consensus 399 ~~g~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 438 (447)
T d1pw4a_ 399 IVGYTVDFFG-------------WDGGFMVMIGGSILAVILLIVVMIGEKRRH 438 (447)
T ss_dssp HHHHHHHSSC-------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------------hHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 9999999887 999999888888888777666655544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=2e-16 Score=150.70 Aligned_cols=141 Identities=15% Similarity=0.120 Sum_probs=115.5
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTA 331 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~ 331 (431)
..+...++..++..+.|++.||+++|+.+ .++.++..++.+.+...+ ....++..++.|++.+...+...+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 337 (417)
T d1pv7a_ 264 VTTMGELLNASIMFFAPLIINRIGGKNAL------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHCHHHHH------HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhcccccccch------hhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788899999999999999998766 666666666666655544 35566777888999999999999999
Q ss_pred HHhhcCCchhhHHHHHH-HHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014047 332 SELFGLKHFGLIYNFIL-LGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRI 410 (431)
Q Consensus 332 ~~~~~~~~~g~~~g~~~-~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~ 410 (431)
.|.+|++.||++.|+.. ....+|..+ +|.+.|+++|+.| |+.+|++.+++++++.++..+..+++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i-~~~~~G~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 338 TSQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYESIG-------------FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHSCGGGHHHHHHHHHTTTHHHHHHH-HHHHHHHHHHHHC-------------HHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHCCHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC-------------HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999864 677799999 8999999999988 99999999988888887777766655
Q ss_pred hHH
Q 014047 411 RPV 413 (431)
Q Consensus 411 ~~~ 413 (431)
++.
T Consensus 404 ~~~ 406 (417)
T d1pv7a_ 404 GPL 406 (417)
T ss_dssp SCT
T ss_pred Ccc
Confidence 443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=2.7e-15 Score=145.41 Aligned_cols=154 Identities=13% Similarity=0.047 Sum_probs=123.4
Q ss_pred hHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHhh-----hhhHH
Q 014047 237 NLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYASA-----LSGTL 309 (431)
Q Consensus 237 ~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 309 (431)
..| +.++.|.+.++. +.+.+.++..++.+++|+++||+|||+.+ .++.++.+++.++.+.. +...+
T Consensus 47 ~~p-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (447)
T d1pw4a_ 47 AMP-YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLILAAAVMLFMGFVPWATSSIAVM 119 (447)
T ss_dssp HHH-HTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHHHHHHHHHHHHHHCHHHHSSSSHH
T ss_pred HHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH------HHHHHHHHHHHhhccccchhhhhHHHH
Confidence 344 445678888775 88999999999999999999999999877 66666666665554432 23467
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHH
Q 014047 310 YAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTF 389 (431)
Q Consensus 310 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f 389 (431)
++.+++.|++.|..++...+++.|.+|+++|+++.|+.+.+..+|..+ +|.+.+.+.+..+. |++.|
T Consensus 120 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~~~~~~~~~~~~------------w~~~~ 186 (447)
T d1pw4a_ 120 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGMAWFND------------WHAAL 186 (447)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHTCC------------STTCT
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhh-hhhhhhhHhhhhhc------------ccccc
Confidence 888899999999999999999999999999999999999999999999 78788877776643 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 014047 390 LVLAGVCGLGTILSIILTIRI 410 (431)
Q Consensus 390 ~~~~~~~~i~~i~~~~~~~~~ 410 (431)
++.+++.++..++.+++.++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHHHHHHCCCS
T ss_pred hhhhhhHHHHHHHHHHhcccc
Confidence 988887777766666554433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=4e-12 Score=120.32 Aligned_cols=176 Identities=11% Similarity=0.162 Sum_probs=112.7
Q ss_pred HHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
+.+|||++|.+.+..++.......+...+|.++++ +|.|..+. +.+...++..++.+++|+++||+|||+.+
T Consensus 2 ~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l----- 76 (417)
T d1pv7a_ 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL----- 76 (417)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH-----
T ss_pred CcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-----
Confidence 35799999999999998877777777888887765 59998876 88899999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC--CchhhHHHHHHHHHHhHHHHHh
Q 014047 287 ITCTHIMMILTFLLYASALS-----GTLYAATVLLGVCYGVIYSLMVPTASELFGL--KHFGLIYNFILLGNPIGALLFS 359 (431)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~lg~~i~~ 359 (431)
..+..+..++...+..... ...++...+.+.+.+...........+...+ +.+....+........+..+ +
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (417)
T d1pv7a_ 77 -LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL-G 154 (417)
T ss_dssp -HHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-H
T ss_pred -HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccc-c
Confidence 4444433333333332221 1223333444444444443333333332222 23445566666777777777 7
Q ss_pred hhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 014047 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIIL 406 (431)
Q Consensus 360 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 406 (431)
|.+++.+.+.. ++..+........+..++.++.
T Consensus 155 ~~~~~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 187 (417)
T d1pv7a_ 155 ASIVGIMFTIN--------------NQFVFWLGSGCALILAVLLFFA 187 (417)
T ss_dssp HHHHHHHHHHC--------------HHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccccccccccc--------------ccccccchhhHHHHHHHHHHHH
Confidence 87888877654 4455555544444444444443
|