Citrus Sinensis ID: 014060

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
MSSVKFASQDSHAHEDNNNSERHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccccccccccc
cccEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccEHHcccccEHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHcccccccccccccHHHHHHHHHHHHHHHHcccccccccccc
mssvkfasqdshahednnnserhdllhhdsivdptaainmslpCETFLKAAVSLKDQVVEVTwrrgsggggepgrgmdptlytGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQeralpagpeeggfgmsYDLLYGRAGFLWAALFVNKhlgagtlpnellMPIVDAVLaggragatantacplmyrwhgtrywgaanGLAGILQVLLhfplseedaedVKGTLRYMmsnrfpqsgnypvsegnprdklvqwshGATGVAITLCkasqvfpsdreFRDAAIEAGEVLWKNGLvkkvgladgaagnAYAFLSLYRLTGETIYVERANAFSSFLYHNaqnlvtsghtrgadhgysLFQGLAGTACiwfdllepvnarfpgyel
mssvkfasqdshahednnnSERHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWrrgsggggepgrgmdPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTflcgrggiyAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
MSSVKFASQDSHAHEDNNNSERHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWrrgsggggepgrgMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLaggragatantaCPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
**************************HHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWRRG**********MDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSE********TLRY*********************KLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARF*****
*****************************************LPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCAS**********FLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
******************NSERHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
***************************HDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSSVKFASQDSHAHEDNNNSERHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query431 2.2.26 [Sep-21-2011]
Q9JJK2450 LanC-like protein 2 OS=Mu yes no 0.767 0.735 0.373 3e-57
Q9NS86450 LanC-like protein 2 OS=Ho yes no 0.767 0.735 0.365 7e-55
O43813399 LanC-like protein 1 OS=Ho no no 0.777 0.839 0.360 3e-51
Q90ZL2405 LanC-like protein 1 OS=Da yes no 0.786 0.837 0.357 1e-50
O89112399 LanC-like protein 1 OS=Mu no no 0.777 0.839 0.354 5e-49
Q9QX69399 LanC-like protein 1 OS=Ra no no 0.777 0.839 0.351 1e-48
Q8CD19420 LanC-like protein 3 OS=Mu no no 0.802 0.823 0.342 9e-43
Q6ZV70420 LanC-like protein 3 OS=Ho no no 0.795 0.816 0.344 1e-42
Q9Y0Y7419 LanC-like protein 3 homol yes no 0.781 0.804 0.323 2e-40
Q29HZ1420 LanC-like protein 3 homol no no 0.772 0.792 0.310 5e-38
>sp|Q9JJK2|LANC2_MOUSE LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1 Back     alignment and function desciption
 Score =  222 bits (566), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 206/369 (55%), Gaps = 38/369 (10%)

Query: 78  DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRD-STRHVTFLCGRGGIY 136
           D + YTG  G A + L+ Y +TG+Q  LL S   +D     +R+ S R VTFLCG  G  
Sbjct: 99  DCSAYTGWTGIALLYLQLYRVTGDQTYLLRS---LDYVKRTLRNLSGRRVTFLCGDAGPL 155

Query: 137 AIGAVVANRMGDRSRRDFFLNLFLE-----IAQERALPAGPEEGGFGMSYDLLYGRAGFL 191
           A+GAV+ +++         +   L+     + QE  LP            +LLYGRAG+L
Sbjct: 156 AVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPD-----------ELLYGRAGYL 204

Query: 192 WAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGAT---ANTACPLMYRWHGTRYWGAAN 248
           +A L++N  +G GT+    +  +V A++  G++ +     +  CPL+Y+WH  +Y GAA+
Sbjct: 205 YALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRKQYVGAAH 264

Query: 249 GLAGILQVLLHFPLSEEDAED----VKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSH 304
           G+AGI  +L+  P ++ D E     VK ++ Y+   +F +SGNYP S  N  D+LV W H
Sbjct: 265 GMAGIYYMLMQ-PEAKVDQETLTEMVKPSIDYVRHKKF-RSGNYPSSLSNETDRLVHWCH 322

Query: 305 GATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLADGAAGNAYAFLSLY 363
           GA GV   L +A QVF  ++  ++A +E  +V+W+ GL++K  G+  G +GN Y+FLSLY
Sbjct: 323 GAPGVIHVLLQAYQVFKEEKYLKEA-MECSDVIWQRGLLRKGYGICHGTSGNGYSFLSLY 381

Query: 364 RLTGETIYVERANAFSSFLYHNAQNLVTSGH-TRGADHGYSLFQGLAGTACIWFDLLEPV 422
           RLT +  Y+ RA  F+ +       L    H  R  D  YSLF+G+AG      D+L P 
Sbjct: 382 RLTQDKKYLYRACKFAEWC------LDYGAHGCRIPDRPYSLFEGMAGAVHFLSDILVPE 435

Query: 423 NARFPGYEL 431
            ARFP +EL
Sbjct: 436 TARFPAFEL 444
Necessary for abscisic acid (ABA) binding on the cell membrane and activation of the ABA signaling pathway in granulocytes.
Mus musculus (taxid: 10090)
>sp|Q9NS86|LANC2_HUMAN LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1 Back     alignment and function description
>sp|O43813|LANC1_HUMAN LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1 SV=1 Back     alignment and function description
>sp|Q90ZL2|LANC1_DANRE LanC-like protein 1 OS=Danio rerio GN=lancl1 PE=2 SV=1 Back     alignment and function description
>sp|O89112|LANC1_MOUSE LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1 SV=1 Back     alignment and function description
>sp|Q9QX69|LANC1_RAT LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1 PE=2 SV=2 Back     alignment and function description
>sp|Q8CD19|LANC3_MOUSE LanC-like protein 3 OS=Mus musculus GN=Lancl3 PE=2 SV=2 Back     alignment and function description
>sp|Q6ZV70|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens GN=LANCL3 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y0Y7|LANC3_DROME LanC-like protein 3 homolog OS=Drosophila melanogaster GN=CG2061 PE=1 SV=1 Back     alignment and function description
>sp|Q29HZ1|LANC3_DROPS LanC-like protein 3 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15215 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
224081108423 predicted protein [Populus trichocarpa] 0.932 0.950 0.780 0.0
225468981421 PREDICTED: lanC-like protein 2 [Vitis vi 0.972 0.995 0.760 0.0
147854361421 hypothetical protein VITISV_029722 [Viti 0.972 0.995 0.758 0.0
297741827467 unnamed protein product [Vitis vinifera] 0.972 0.897 0.686 0.0
224093724390 predicted protein [Populus trichocarpa] 0.900 0.994 0.774 0.0
315307498429 hypothetical protein [Gossypium hirsutum 0.990 0.995 0.722 1e-179
255581730432 catalytic, putative [Ricinus communis] g 0.958 0.956 0.741 1e-177
315307490432 hypothetical protein [Gossypium hirsutum 0.990 0.988 0.706 1e-174
357463289415 G protein-coupled receptor-like protein 0.921 0.956 0.712 1e-171
8489877424 putative 7-transmembrane G-protein-coupl 0.962 0.978 0.687 1e-170
>gi|224081108|ref|XP_002306296.1| predicted protein [Populus trichocarpa] gi|222855745|gb|EEE93292.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/410 (78%), Positives = 362/410 (88%), Gaps = 8/410 (1%)

Query: 22  RHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTL 81
           R DL H    +DPT+  +M LP ET L+AA+SLK+QVVEVTW R     G+ G G+DPT+
Sbjct: 22  RLDLTHR---IDPTST-DMLLPHETLLRAAISLKNQVVEVTWERD----GKTGTGIDPTV 73

Query: 82  YTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAV 141
           YTGLLGTAF CLRSYE+TGN+Q+LLL +EI+DTC+   R S+RH+TFLCGRGG+YA+GAV
Sbjct: 74  YTGLLGTAFTCLRSYEVTGNEQDLLLCSEIVDTCSVSARTSSRHITFLCGRGGLYALGAV 133

Query: 142 VANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHL 201
            A+  GDR RRDFF+NLFLE+AQERALP GPEEGGFGMSY+L+YGRAGFLWAALF+NKHL
Sbjct: 134 AASYKGDRRRRDFFVNLFLEVAQERALPVGPEEGGFGMSYELMYGRAGFLWAALFINKHL 193

Query: 202 GAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFP 261
           G GTLP +LLMP+VDAVLAGGRAGA+ N ACPLMYRWHGTRYWGA NGLAGILQVLLHFP
Sbjct: 194 GEGTLPCDLLMPVVDAVLAGGRAGASDNAACPLMYRWHGTRYWGAPNGLAGILQVLLHFP 253

Query: 262 LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFP 321
           LS ED EDVK TLRYMMSNRFP SGNYP SEGNPRDKLVQWSHGATG+AITLCKAS++FP
Sbjct: 254 LSIEDVEDVKATLRYMMSNRFPHSGNYPSSEGNPRDKLVQWSHGATGMAITLCKASEMFP 313

Query: 322 SDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSF 381
           +DREFR+AAIEAGEV+WK+GLVKKVGLADGAAGNAYAFLSLYRLTGE+IY ERANAF+SF
Sbjct: 314 NDREFRNAAIEAGEVVWKSGLVKKVGLADGAAGNAYAFLSLYRLTGESIYEERANAFASF 373

Query: 382 LYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL 431
           LYHNA  LVT G  RGA+H YSLFQGLAGTAC+WFDLL+P ++RFPGYEL
Sbjct: 374 LYHNASELVTIGDARGANHAYSLFQGLAGTACLWFDLLKPESSRFPGYEL 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225468981|ref|XP_002262692.1| PREDICTED: lanC-like protein 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147854361|emb|CAN83415.1| hypothetical protein VITISV_029722 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741827|emb|CBI33140.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224093724|ref|XP_002309963.1| predicted protein [Populus trichocarpa] gi|222852866|gb|EEE90413.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|315307498|gb|ADU04157.1| hypothetical protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255581730|ref|XP_002531667.1| catalytic, putative [Ricinus communis] gi|223528698|gb|EEF30711.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|315307490|gb|ADU04150.1| hypothetical protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|357463289|ref|XP_003601926.1| G protein-coupled receptor-like protein [Medicago truncatula] gi|355490974|gb|AES72177.1| G protein-coupled receptor-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|8489877|gb|AAF75794.1|AF272710_1 putative 7-transmembrane G-protein-coupled receptor [Solanum chacoense] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
TAIR|locus:2171800433 GCL1 "GCR2-like 1" [Arabidopsi 0.995 0.990 0.648 2.3e-151
TAIR|locus:2011466410 GPCR "G protein coupled recept 0.786 0.826 0.483 6.9e-86
TAIR|locus:2051449405 GCL2 "GCR2-like 2" [Arabidopsi 0.786 0.837 0.461 7.4e-82
UNIPROTKB|I3LIW1412 LANCL2 "Uncharacterized protei 0.779 0.815 0.376 1.1e-53
MGI|MGI:1919085450 Lancl2 "LanC (bacterial lantib 0.779 0.746 0.370 1.5e-53
UNIPROTKB|A6QPG6433 LANCL2 "Uncharacterized protei 0.779 0.775 0.368 4.9e-53
UNIPROTKB|E1C3R4455 LANCL2 "Uncharacterized protei 0.779 0.738 0.365 8e-53
RGD|1310809450 Lancl2 "LanC lantibiotic synth 0.779 0.746 0.368 8e-53
UNIPROTKB|F1PEY8366 LANCL2 "Uncharacterized protei 0.779 0.918 0.365 7.2e-52
UNIPROTKB|Q9NS86450 LANCL2 "LanC-like protein 2" [ 0.779 0.746 0.359 1.5e-51
TAIR|locus:2171800 GCL1 "GCR2-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1477 (525.0 bits), Expect = 2.3e-151, P = 2.3e-151
 Identities = 280/432 (64%), Positives = 338/432 (78%)

Query:     2 SSVKFASQDSHAHEDNNNS-ERHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVE 60
             SSV F ++     +D N + E       D ++   +A  +SLP E+FL+AA  LK+QVVE
Sbjct:     3 SSVDFVTEQGRCGDDGNGAGETVKNGEIDHLLSEPSAPTISLPTESFLRAATLLKNQVVE 62

Query:    61 VTWXXXXXXXXXXXX-XMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVV 119
              TW              +DPT+YTGLLGTAF CL+SYE+T N Q+LL  AEIIDTCA+V 
Sbjct:    63 ATWKGGVEALASGSGPVLDPTVYTGLLGTAFTCLKSYEVTRNHQDLLTCAEIIDTCANVA 122

Query:   120 RDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGM 179
             R +TRHVTFLCGRGG+  +GA+VAN  GD+S+RDFFL LFLE+A+ER LPAGPEEGGFGM
Sbjct:   123 RATTRHVTFLCGRGGVCTLGAIVANYRGDQSKRDFFLGLFLELAEERELPAGPEEGGFGM 182

Query:   180 SYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLXXXXXXXXXXXXCPLMYRWH 239
             SYDLLYGRAGFLWAALF+N++LG GT+P+ LL PIV A+L            CPL+YR+H
Sbjct:   183 SYDLLYGRAGFLWAALFLNRYLGQGTVPDHLLSPIVAAILAGGRVGAADHEACPLLYRFH 242

Query:   240 GTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKL 299
             GTR+WGAANGLAGIL VLLHFPLSEED +DV+GTLRYMMSNRFP SGNYP SEGNPRDKL
Sbjct:   243 GTRFWGAANGLAGILYVLLHFPLSEEDVKDVQGTLRYMMSNRFPNSGNYPCSEGNPRDKL 302

Query:   300 VQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAF 359
             VQW+HGATG+AITL KASQVFP +R+FR+AAIEAGEV+WK+GLVKKVGLADG AGNAYAF
Sbjct:   303 VQWAHGATGMAITLAKASQVFPKERDFREAAIEAGEVVWKSGLVKKVGLADGVAGNAYAF 362

Query:   360 LSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLL 419
             LSLYRLTG+ +Y ERA AF+S+L  +A  LV    ++  +H YSLF+GLAG  C+WFDL+
Sbjct:   363 LSLYRLTGDVVYEERAKAFASYLCRDAIELVNMT-SQETEHDYSLFRGLAGPVCLWFDLV 421

Query:   420 EPVNARFPGYEL 431
              PV+++FPGYE+
Sbjct:   422 SPVDSKFPGYEI 433
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0019898 "extrinsic to membrane" evidence=ISS
TAIR|locus:2011466 GPCR "G protein coupled receptor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051449 GCL2 "GCR2-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|I3LIW1 LANCL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1919085 Lancl2 "LanC (bacterial lantibiotic synthetase component C)-like 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6QPG6 LANCL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3R4 LANCL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1310809 Lancl2 "LanC lantibiotic synthetase component C-like 2 (bacterial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEY8 LANCL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NS86 LANCL2 "LanC-like protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00050115
hypothetical protein (424 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
cd04794343 cd04794, euk_LANCL, eukaryotic Lanthionine synthet 1e-121
pfam05147352 pfam05147, LANC_like, Lanthionine synthetase C-lik 1e-101
cd04434343 cd04434, LanC_like, LanC-like proteins 3e-58
cd04792825 cd04792, LanM-like, LanM-like proteins 4e-16
TIGR03897931 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn 2e-08
TIGR03897931 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn 1e-04
cd04793382 cd04793, LanC, LanC is the cyclase enzyme of the l 3e-04
COG4403963 COG4403, LcnDR2, Lantibiotic modifying enzyme [Def 0.004
>gnl|CDD|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information 
 Score =  355 bits (913), Expect = e-121
 Identities = 163/356 (45%), Positives = 212/356 (59%), Gaps = 23/356 (6%)

Query: 82  YTGLLGTAFICLRSYE----LTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYA 137
           YTG  G A++ L+ YE    LT +Q  L  + E I      + D  R ++FLCG  G+YA
Sbjct: 1   YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPD-DRRISFLCGNAGVYA 59

Query: 138 IGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFV 197
           +GA V + + D    D FL+ FL++ +    P        G+  +LLYGRAG+L+A LF+
Sbjct: 60  VGAAVYHYLKDEDEVDEFLSKFLQLLESVVSP------DSGLPDELLYGRAGYLYALLFL 113

Query: 198 NKHLGAGTLPNELLMPIVDAVLAGGRAGAT-ANTACPLMYRWHGTRYWGAANGLAGILQV 256
           NK  G   +P+ L+  I DA+L  GR GA      CPLMY WHG  Y GAA+GLAGIL +
Sbjct: 114 NKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYI 173

Query: 257 LLHFPL---SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNP-RDKLVQWSHGATGVAIT 312
           LL  PL       A  +K +L Y++S +FP SGN+P S GN  RD+LVQW HGA G+   
Sbjct: 174 LLQTPLFLLKPSLAPLIKRSLDYLLSLQFP-SGNFPSSLGNRKRDRLVQWCHGAPGIVYL 232

Query: 313 LCKASQVFPSDREFRDAAIEAGEVLWKNGLVKKV-GLADGAAGNAYAFLSLYRLTGETIY 371
           L KA  VF  + ++ +AAI+ GE++WK GL+KK  GL  G AGNAYAFL LYRLTG+  Y
Sbjct: 233 LAKAYLVFK-EEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKY 291

Query: 372 VERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFP 427
           + RA  F+ FL  N          R  D  +SLF+GLAGTAC   DLL+P  A FP
Sbjct: 292 LYRACKFAEFL-INYG---FKNGARIPDRPFSLFEGLAGTACFLADLLQPRQAGFP 343

This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs. Length = 343
>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein Back     alignment and domain information
>gnl|CDD|239881 cd04434, LanC_like, LanC-like proteins Back     alignment and domain information
>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins Back     alignment and domain information
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM Back     alignment and domain information
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM Back     alignment and domain information
>gnl|CDD|240110 cd04793, LanC, LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 431
KOG2787403 consensus Lanthionine synthetase C-like protein 1 100.0
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 100.0
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 100.0
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 100.0
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 100.0
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 100.0
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 100.0
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 100.0
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 99.94
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 99.93
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 99.93
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 99.92
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 99.87
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 99.84
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 99.82
KOG2787403 consensus Lanthionine synthetase C-like protein 1 99.52
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 96.98
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 96.72
COG1331667 Highly conserved protein containing a thioredoxin 96.61
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 96.5
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 96.24
cd00249 384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 95.68
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 95.04
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 94.95
COG3533 589 Uncharacterized protein conserved in bacteria [Fun 94.84
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 94.4
COG1331667 Highly conserved protein containing a thioredoxin 94.35
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 92.92
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 92.28
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 91.93
PF07221 346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 91.28
KOG2429622 consensus Glycosyl hydrolase, family 47 [Carbohydr 90.3
COG3533589 Uncharacterized protein conserved in bacteria [Fun 87.25
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 87.07
PF03663 370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 85.19
PTZ00470522 glycoside hydrolase family 47 protein; Provisional 83.84
KOG2430587 consensus Glycosyl hydrolase, family 47 [Carbohydr 82.33
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=6.4e-68  Score=483.79  Aligned_cols=364  Identities=52%  Similarity=0.920  Sum_probs=327.8

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccCC
Q 014060           45 ETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTR  124 (431)
Q Consensus        45 ~~~l~~A~~i~~~l~~~~w~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~~  124 (431)
                      |.+...|.+|.|.++..+|-...  +    .+.+.++|+|.+|||+++.++|++|.|+.++..+.++++.+...-.+ ..
T Consensus        35 e~~~r~~~~ikd~~~~~~~~~S~--d----~~~d~tlYtG~~GiAfl~~kly~vTrd~~~L~~~~e~Vk~~~~~~~s-~~  107 (403)
T KOG2787|consen   35 EFIKRLATKIKDLVVEMTWGKSG--D----EVRDGTLYTGWLGIAFLYLKLYEVTRDLYDLLLCLEIVKACLVASRS-SR  107 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC--C----CCcCCceeechHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccc-cC
Confidence            78889999999999999997543  1    12578999999999999999999999999999999999988742222 46


Q ss_pred             cccccccchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCC
Q 014060          125 HVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAG  204 (431)
Q Consensus       125 ~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~  204 (431)
                      .++|.+|.+|++++.+++++.+++++..+..+.++..+.   ..+       .+-++|+++|.||++++++++.+..+.+
T Consensus       108 ~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~---~~~-------~dlp~ElLyGRaGYL~a~lflNk~ig~~  177 (403)
T KOG2787|consen  108 RVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLR---LCS-------SDLPDELLYGRAGYLWACLFLNKYIGQE  177 (403)
T ss_pred             ceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhcc---cCC-------ccccHHHHhhHHHHHHHHHHHHhhcCCC
Confidence            799999999999999999999999999999888887764   112       4467999999999999999999999999


Q ss_pred             CCchhhHHHHHHHHHHcchhccccC-CCCCCcceeeccccCCCCcchHHHHHHHhcCCC---ChHHHHHHHHHHHHHHhc
Q 014060          205 TLPNELLMPIVDAVLAGGRAGATAN-TACPLMYRWHGTRYWGAANGLAGILQVLLHFPL---SEEDAEDVKGTLRYMMSN  280 (431)
Q Consensus       205 ~~~~~~i~~~~~~il~~~~~~~~~~-~~~~~~~~w~~~~~~G~aHG~aGI~~~L~~~~~---~~~~~~~i~~~l~~~~~~  280 (431)
                      ++.++.|+++++.|++.++.+++++ .+||+|+.|++++|.|.|||.+||++.|+.-..   .+...++++.+++|+++.
T Consensus       178 ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~  257 (403)
T KOG2787|consen  178 TIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQN  257 (403)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHc
Confidence            9888999999999999999887764 468999999999999999999999999997542   455688999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHcCCCCC-CccccchhhHHHHH
Q 014060          281 RFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLADGAAGNAYAF  359 (431)
Q Consensus       281 ~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~LCHG~aG~~~~L  359 (431)
                      ++| .||+|.+.+++.+..+.||||+||+++.|.+++++|+ .++|++.+.++++.+|++|++++ +|+|||++||+|+|
T Consensus       258 rfp-sGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~-Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaYvF  335 (403)
T KOG2787|consen  258 RFP-SGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFK-EEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAYVF  335 (403)
T ss_pred             cCC-CCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchhhh
Confidence            998 9999999988888899999999999999999999999 99999999999999999999977 99999999999999


Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchHHHHHHHHHccCcccCCCCCCCC
Q 014060          360 LSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL  431 (431)
Q Consensus       360 l~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~~~Ll~l~~p~~~~~~~~~~  431 (431)
                      |.+|+.|+|.+|++||++|++++++...+    -+.+.+|.|+|||+|+||.+|+|+++..|++++||+|||
T Consensus       336 LsLyRLT~d~kYlyRA~kFae~lld~~~~----~g~r~pDrpySLfeG~AG~v~~l~Dll~P~~arFP~~El  403 (403)
T KOG2787|consen  336 LSLYRLTGDMKYLYRAKKFAEWLLDYGFS----HGCRTPDRPYSLFEGVAGTVYLLLDLLDPEQARFPGYEL  403 (403)
T ss_pred             HhHHHHcCcHHHHHHHHHHHHHHHhhhhh----ccCCCCCCChhHHhcccchhhHhhhhcChhhccCCcCcC
Confidence            99999999999999999999999998642    244678999999999999999999999999999999997

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
3e6u_A411 Crystal Structure Of Human Lancl1 Length = 411 9e-51
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1 Length = 411 Back     alignment and structure 
Iteration: 1

 Score =  197 bits (501), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 188/361 (52%), Gaps = 26/361 (7%)
Query: 78  DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYA 137
           D T YTG  G A + L  Y++ G+   L L+   +    + +  + R +TFLCG  G  A
Sbjct: 70  DGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCL--TKRSITFLCGDAGPLA 127
Query: 138 IGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFV 197
           + AV+ ++M +  + +  +   + +   +  P  P E        +LYGR G+++A LFV
Sbjct: 128 VAAVLYHKMNNEKQAEDCITRLIHL--NKIDPHAPNE--------MLYGRIGYIYALLFV 177
Query: 198 NKHLGAGTLPNELLMPIVDAVLXX---XXXXXXXXXXCPLMYRWHGTRYWGAANGLAGIL 254
           NK+ G   +P   +  I + +L                PLMY W+   Y GAA+GLAGI 
Sbjct: 178 NKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIY 237
Query: 255 QVLLHFPLSEEDAED---VKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAI 311
             L+   L     +    VK ++ Y+   +FP SGNYP   G+ RD LV W HGA GV  
Sbjct: 238 YYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFP-SGNYPPCIGDNRDLLVHWCHGAPGVIY 296
Query: 312 TLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLADGAAGNAYAFLSLYRLTGETI 370
            L +A +VF  ++   DA  +  +V+W+ GL+KK  GL  G+AGNAYAFL+LY LT +  
Sbjct: 297 MLIQAYKVFREEKYLCDA-YQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMK 355
Query: 371 YVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYE 430
           Y+ RA  F+ +     ++       R  D  +SLF+G+AGT     DLL P  ARFP +E
Sbjct: 356 YLYRACKFAEWCLEYGEH-----GCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 410
Query: 431 L 431
           L
Sbjct: 411 L 411

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 1e-89
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 3e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411 Back     alignment and structure
 Score =  277 bits (708), Expect = 1e-89
 Identities = 127/385 (32%), Positives = 194/385 (50%), Gaps = 32/385 (8%)

Query: 54  LKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIID 113
           +++ + ++     S          D T YTG  G A + L  Y++ G+   L L+   + 
Sbjct: 52  IRELLQQMERGLKSA------DPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVK 105

Query: 114 TCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPE 173
              + +    R +TFLCG  G  A+ AV+ ++M +  + +  +   + + +         
Sbjct: 106 QSLNCLTK--RSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDP------ 157

Query: 174 EGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATAN---T 230
                   ++LYGR G+++A LFVNK+ G   +P   +  I + +L  G   A       
Sbjct: 158 ----HAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTA 213

Query: 231 ACPLMYRWHGTRYWGAANGLAGILQVLLHFPL---SEEDAEDVKGTLRYMMSNRFPQSGN 287
             PLMY W+   Y GAA+GLAGI   L+   L     +    VK ++ Y+   +FP SGN
Sbjct: 214 KSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFP-SGN 272

Query: 288 YPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKK-V 346
           YP   G+ RD LV W HGA GV   L +A +VF  + ++   A +  +V+W+ GL+KK  
Sbjct: 273 YPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFR-EEKYLCDAYQCADVIWQYGLLKKGY 331

Query: 347 GLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQ 406
           GL  G+AGNAYAFL+LY LT +  Y+ RA  F+ +     ++       R  D  +SLF+
Sbjct: 332 GLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEH-----GCRTPDTPFSLFE 386

Query: 407 GLAGTACIWFDLLEPVNARFPGYEL 431
           G+AGT     DLL P  ARFP +EL
Sbjct: 387 GMAGTIYFLADLLVPTKARFPAFEL 411
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query431
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 100.0
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 100.0
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 99.93
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 99.86
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 97.84
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 97.79
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 97.74
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 97.72
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.7
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.69
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 97.67
3k11_A445 Putative glycosyl hydrolase; structural genomics, 97.42
1nc5_A373 Hypothetical protein YTER; structural genomics, he 97.33
1nc5_A373 Hypothetical protein YTER; structural genomics, he 97.19
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 96.99
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 96.98
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 96.6
3gt5_A 402 N-acetylglucosamine 2-epimerase; structural genomi 95.53
2gz6_A 388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 95.23
3k11_A445 Putative glycosyl hydrolase; structural genomics, 94.75
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 93.01
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 91.55
2zbl_A 421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 91.03
3h7l_A 586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 82.59
3e7j_A 749 Heparinase II protein; alpha and beta lyase, alpha 80.81
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 80.61
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-59  Score=469.50  Aligned_cols=337  Identities=37%  Similarity=0.658  Sum_probs=289.1

Q ss_pred             CCCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHcCCcchHHHH
Q 014060           76 GMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFF  155 (431)
Q Consensus        76 ~~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~  155 (431)
                      +++.++|+|.+||+|||++++++|++++|++.+.++++.+.+.+.  ...+++++|.+|+++++..+++.+++++..+.+
T Consensus        68 ~~~~~lY~G~~Gia~~l~~l~~~t~d~~yl~~a~~~l~~~~~~l~--~~~~~~~~G~aG~l~~l~~ly~~~g~~~~a~~~  145 (411)
T 3e6u_A           68 PRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLT--KRSITFLCGDAGPLAVAAVLYHKMNNEKQAEDC  145 (411)
T ss_dssp             TTCCCSSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCC--SCCCCTTTSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCeeeChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--ccCCccccCcHHHHHHHHHHHHHhCCHHHHHHH
Confidence            378999999999999999999999999999999999999887664  346899999999988888899999987766555


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccC---CCC
Q 014060          156 LNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATAN---TAC  232 (431)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~---~~~  232 (431)
                      ++.+.+..   ..+       .+.++|+++|.||++++|+.+++.++++.+++..+.++++.+++.++...+..   ..+
T Consensus       146 ~~~l~~~~---~~~-------~~~~~dll~G~AG~l~aLl~L~~~~~~~~~~~~~i~~i~~~ii~~g~~~~~~~~~~~~~  215 (411)
T 3e6u_A          146 ITRLIHLN---KID-------PHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKS  215 (411)
T ss_dssp             HHHHHGGG---GGC-------TTCCSSTTTSHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHh---ccc-------ccCChhhhcCcHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence            55554432   122       23468999999999999999999999988877778889999988776543221   246


Q ss_pred             CCcceeeccccCCCCcchHHHHHHHhcCC---CChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCchHH
Q 014060          233 PLMYRWHGTRYWGAANGLAGILQVLLHFP---LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGV  309 (431)
Q Consensus       233 ~~~~~w~~~~~~G~aHG~aGI~~~L~~~~---~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~Gi  309 (431)
                      |.+|.|+++.++|||||++||+++|+++.   .++++.+.++++++|+++.+.+ +||||+.+++..+.+++||||+|||
T Consensus       216 pl~~~w~~~~~~G~aHG~aGI~~~Ll~~~~~~~~~~~~~~i~~~l~~l~~~~~~-~g~wp~~~~~~~~~~~~wChG~~Gi  294 (411)
T 3e6u_A          216 PLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFP-SGNYPPCIGDNRDLLVHWCHGAPGV  294 (411)
T ss_dssp             SCCCCBTTBCBCSTTTSHHHHHHHHTCGGGCCCHHHHHHTHHHHHHHHHHTCCT-TSCCCSBTTCCCCCCCSSSSSHHHH
T ss_pred             CcceeecCccCCcccccHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCcccCccccccCCcHHH
Confidence            78899999999999999999999999865   3567889999999999998876 6899998765555678999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHcCCC-CCCccccchhhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhh
Q 014060          310 AITLCKASQVFPSDREFRDAAIEAGEVLWKNGLV-KKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQN  388 (431)
Q Consensus       310 ~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~LCHG~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~  388 (431)
                      +++++.++++++ ++++.+.+.++++.+|+.|+. +++|||||.+|++++|+++|+.|++++|+++|.+++++++++.. 
T Consensus       295 ~~~l~~~~~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~~lChG~aG~~~~ll~~~~~t~~~~~~~~A~~~~~~~~~~~~-  372 (411)
T 3e6u_A          295 IYMLIQAYKVFR-EEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGE-  372 (411)
T ss_dssp             HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHCSBTTCSCSTTSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTTS-
T ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCccCCCCceecChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-
Confidence            999999999999 999999999999999999974 56999999999999999999999999999999999998866432 


Q ss_pred             hhccCCCCCCCCCcccccchHHHHHHHHHccCcccCCCCCCCC
Q 014060          389 LVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL  431 (431)
Q Consensus       389 ~~~~~~~~~~~~~~gl~~G~aGI~~~Ll~l~~p~~~~~~~~~~  431 (431)
                          ...+.++.++|||+|+|||+++|+|+.+|++++||+|||
T Consensus       373 ----~~~~~~~~~~sL~~G~aGi~~~Ll~l~~p~~~~fp~~~~  411 (411)
T 3e6u_A          373 ----HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL  411 (411)
T ss_dssp             ----SCCCCCSSTTSTTTSHHHHHHHHHHHTSGGGCCCTTTCC
T ss_pred             ----ccCCCCCCCChhhccHHHHHHHHHHHcCCCcccCCCCCC
Confidence                233456778999999999999999999999999999997
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6 incomplete toroid, sugar protein, lyase; HET: NAG GCU GCD; 2.10A {Pedobacter heparinus} PDB: 3e80_A* 2fut_A* 2fuq_A* Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 431
d2g0da1409 a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis 1e-43
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

 Score =  155 bits (392), Expect = 1e-43
 Identities = 50/373 (13%), Positives = 99/373 (26%), Gaps = 34/373 (9%)

Query: 78  DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRH-VTFLCGRGGIY 136
           + TL TGL G   +         ++         I+   S +        +   G  GI 
Sbjct: 30  ELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGSLYSGAAGIA 89

Query: 137 AIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALF 196
                +             LN ++E      +     E      YD++ G +G L   L 
Sbjct: 90  LSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLL 149

Query: 197 VNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTAC------PLMYRWHGTRYWGAANGL 250
           +N       L   ++  + +         +    +              G    G A+GL
Sbjct: 150 INDEQYD-DLKILIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGL 208

Query: 251 AGILQVLLHFPL----SEEDAEDVKGTLRYMMSNRFPQSGN-------------YPVSEG 293
           AG+  +L +  +    +E     ++  +         +                      
Sbjct: 209 AGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIR 268

Query: 294 NPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLADGA 352
                   W +G  G+++           +  F D A +  E   +  L      +  G 
Sbjct: 269 EASFIRDAWCYGGPGISLLYLYGGLALD-NDYFVDKAEKILESAMQRKLGIDSYMICHGY 327

Query: 353 AGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTA 412
           +G         RL     +      F+       +         G + G    +G++G  
Sbjct: 328 SGLIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEE-------YGDESGTGFLEGISGCI 380

Query: 413 CIWFDLLEPVNAR 425
            +       +N  
Sbjct: 381 LVLSKFEYSINFT 393

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query431
d2g0da1409 Nisin biosynthesis protein NisC {Lactococcus lacti 100.0
d2g0da1409 Nisin biosynthesis protein NisC {Lactococcus lacti 99.82
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 97.81
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 97.65
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 97.26
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 96.76
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 85.47
d1dl2a_511 Class I alpha-1;2-mannosidase, catalytic domain {B 85.06
d1nxca_467 Class I alpha-1;2-mannosidase, catalytic domain {M 83.72
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 83.6
d2afaa1 411 Putative NAG isomerase YihS {Salmonella typhimuriu 83.13
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1e-44  Score=362.93  Aligned_cols=330  Identities=15%  Similarity=0.103  Sum_probs=236.1

Q ss_pred             CCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhcc-CCcccccccchHHHHHHHHHHHHcCCcch---H
Q 014060           77 MDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDS-TRHVTFLCGRGGIYAIGAVVANRMGDRSR---R  152 (431)
Q Consensus        77 ~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~-~~~~~~~~G~~Gi~~l~~~~~~~~~d~~~---~  152 (431)
                      .+.+||+|.+||++||++|++.|++++|.+.+++.++.+.+.+... ..+.|+|+|.+|+.+.+..+++.  +.++   +
T Consensus        29 ~~~sLy~G~~GiaL~l~~l~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~glf~G~~Gi~~~l~~~~~~--~~~~~~~~  106 (409)
T d2g0da1          29 GELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGSLYSGAAGIALSILHLRED--DEKYKNLL  106 (409)
T ss_dssp             GGGSTTTSHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTTSHHHHHHHHGGGTTT--CHHHHHHH
T ss_pred             CCCcccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCCCcceeCCHHHHHHHHHHHHhc--chhhhHHH
Confidence            4579999999999999999999999999999999999988877533 34689999999985544433321  1221   1


Q ss_pred             HHHHHHHHHHHHh--ccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccC-
Q 014060          153 DFFLNLFLEIAQE--RALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATAN-  229 (431)
Q Consensus       153 ~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~-  229 (431)
                      +...+.+...+.+  ...+...   .....+|+++|.||++.+|+.+++...+     +....+.+.+.+......... 
T Consensus       107 ~~l~~~l~~~~~~~i~~~~~~~---~~~~~~D~l~G~aG~~~~LL~~~~~~~~-----~~~~~i~~~l~~~~~~~~~~~~  178 (409)
T d2g0da1         107 DSLNRYIEYFVREKIEGFNLEN---ITPPDYDVIEGLSGILSYLLLINDEQYD-----DLKILIINFLSNLTKENNGLIS  178 (409)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGG---CCHHHHSSSSSHHHHHHHHTTCCCGGGH-----HHHHHHHHHHHHTTSCCSSSCT
T ss_pred             HHHHHHHHHHHHHHHHHhhccc---cCCcccchhcccHHHHHHHHHhcccccc-----HHHHHHHHHHHHHHHhcccccc
Confidence            2222222222211  1111100   0234689999999999999988776543     344555555444322211000 


Q ss_pred             CCCCC--cce-------eeccccCCCCcchHHHHHHHhcCC----CChHHHHHHHHHHHHHHhccCC--CCCCCCCCCC-
Q 014060          230 TACPL--MYR-------WHGTRYWGAANGLAGILQVLLHFP----LSEEDAEDVKGTLRYMMSNRFP--QSGNYPVSEG-  293 (431)
Q Consensus       230 ~~~~~--~~~-------w~~~~~~G~aHG~aGI~~~L~~~~----~~~~~~~~i~~~l~~~~~~~~~--~~gnw~~~~~-  293 (431)
                      ...+.  ...       +.+..++|||||.|||+++|+.++    .++...+.++++++++.+....  ...+||+.+. 
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~  258 (409)
T d2g0da1         179 LYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVA  258 (409)
T ss_dssp             TCBCGGGSSSHHHHHHCTTCBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECH
T ss_pred             cccccccccccchhcccCCCCCccchhhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHhhhccccCCCCCcCcc
Confidence            00000  000       113357999999999999887543    4677788899999988775442  3457988652 


Q ss_pred             ----------CCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHcCCC-CCCccccchhhHHHHHHHH
Q 014060          294 ----------NPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLV-KKVGLADGAAGNAYAFLSL  362 (431)
Q Consensus       294 ----------~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~LCHG~aG~~~~Ll~l  362 (431)
                                .....+.+||||+|||+++++.++++++ ++++.+.+.++.+.+|+.+.. .++|||||.+|++++|+.+
T Consensus       259 ~~~~~~~~~~~~~~~~~~WChG~~Gi~la~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~LCHG~aG~~~~l~~~  337 (409)
T d2g0da1         259 DELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALD-NDYFVDKAEKILESAMQRKLGIDSYMICHGYSGLIEICSLF  337 (409)
T ss_dssp             HHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHCTTCCSCCTTTSHHHHHHHHHHH
T ss_pred             cccccccccccCcccccccCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhccCCCCCcccCcHHHHHHHHHHH
Confidence                      1123468999999999999999999999 999999999999999999875 4699999999999999999


Q ss_pred             HHHhCCchHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchHHHHHHHHHccCcccC
Q 014060          363 YRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNA  424 (431)
Q Consensus       363 ~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~~~Ll~l~~p~~~  424 (431)
                      ++.++++++.+++.++.........       ...+..++|||+|.|||+++|+++.+|.+.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~gl~~G~aGi~~~Ll~~~~~~~~  392 (409)
T d2g0da1         338 KRLLNTKKFDSYMEEFNVNSEQILE-------EYGDESGTGFLEGISGCILVLSKFEYSINF  392 (409)
T ss_dssp             HHHHCCCTTHHHHHHHHHTHHHHHH-------SCCSTTCSSTTTSHHHHHHHHHHHHSCCCS
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcc-------cCCCCCCCchhccHHHHHHHHHHhcCCCCC
Confidence            9999999999888877665544322       133557899999999999999999999774
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure