Citrus Sinensis ID: 014067

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
Protein Sequence
MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cEEHHEHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccccccccccccccccccEHHcHHEEcccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccc
Coil and Loop (DISEMBL)
MLFAGLYIVALGVggikgslaphgaeqydettQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEdnkgwqwgfgiSTATILLSIPifllgspfyrnkiptgsplTTIFKVLTAAIFNtcksknssnavtevhssptcsnesrdegnsnvkekvpsqkpteDIKFLNRAlrnnpaypivqCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNtklgslkvppaslpvfpVIFILILapvynhviipFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNsglvnsseplpITFLWVALQYLFLGSADLFTLAGMMEFfftdaplsmRSLATSLSWASLAMGYYFSTVLVSIVNNItstyrhtpwlfgsnlnhyhLERFYWLMCILGGLNFLHFLFWAARykysstgp
Flexible Loop (DISEMBL)
MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCksknssnavtevhssptcsnesrdegnsnvkekvpsqkpteDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNsglvnssepLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP
Low Complexity Region (SEG)
MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTvkeveevkivvkiFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRslatslswaslaMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP
Disordered region (IsUnstruct)
*LFAGLYIVALGVGGIKGSLAPHGAEQY***TQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC******************************************IKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY*****
Disordered Region (DISOPRED)
MLFAGLYIVALGVGGIKGSLAPHGAEQYDE******KQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSS******************************QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS***
Disordered Region (DISEMBL)
MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKS**************************************EDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP
Disordered Region (DISPRO)
MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSP********************QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST**
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	431	2.2.26 [Sep-21-2011]
Q8H157	585	Nitrate transporter 1.2 O	yes	no	0.997	0.735	0.681	1e-179
Q8VYE4	567	Probable peptide/nitrate	no	no	0.965	0.733	0.678	1e-169
Q9FM20	589	Probable peptide/nitrate	no	no	0.972	0.711	0.665	1e-166
P46032	585	Peptide transporter PTR2	no	no	0.958	0.705	0.383	1e-85
Q9M390	570	Peptide transporter PTR1	no	no	0.953	0.721	0.377	8e-81
Q9LSF0	515	Probable peptide/nitrate	no	no	0.874	0.732	0.400	4e-80
Q9LFB8	570	Peptide transporter PTR5	no	no	0.948	0.717	0.360	3e-78
Q9LSE8	521	Putative peptide/nitrate	no	no	0.886	0.733	0.4	9e-78
Q93VV5	591	Probable peptide/nitrate	no	no	0.935	0.681	0.387	1e-76
Q84WG0	545	Probable peptide/nitrate	no	no	0.888	0.702	0.342	8e-73

>sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1

 Score =  628 bits (1620), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 300/440 (68%), Positives = 360/440 (81%), Gaps = 10/440 (2%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           MLF GLY+VALGVGGIKGSLA HGAEQ+DE+T  GRKQRS FFNY+VFCL+CGAL+AVTF
Sbjct: 143 MLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFNYFVFCLACGALVAVTF 202

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           VVW+EDNKGW+WGFG+ST  I +SI IFL GS FYRNKIP GSPLTTI KVL AA    C
Sbjct: 203 VVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLTTILKVLLAASVKCC 262

Query: 121 KSKNSSNAVTEVHSSPT--CSNESRDEGNSNVKEKVPSQKP--------TEDIKFLNRAL 170
            S +SSNAV  +  SP+  C ++ + E  S  + + P Q+         T  +K LN A 
Sbjct: 263 SSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKPRQEEALPPRAQLTNSLKVLNGAA 322

Query: 171 RNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSL 230
              P + +++CTV++VE+VKIV+K+ PIF  TIMLNCCLAQLSTFSVQQAA+MNTK+GSL
Sbjct: 323 DEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCLAQLSTFSVQQAASMNTKIGSL 382

Query: 231 KVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVA 290
           K+PPASLP+FPV+FI+ILAP+Y+H+IIPFARK TKTE G+THLQRIG GL+LSI+AMAVA
Sbjct: 383 KIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETGVTHLQRIGVGLVLSILAMAVA 442

Query: 291 ALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM 350
           ALVEIKRK VA +SGL++S E LP+TFLW+ALQYLFLGSADLFTLAG++E+FFT+AP SM
Sbjct: 443 ALVEIKRKGVAKDSGLLDSKETLPVTFLWIALQYLFLGSADLFTLAGLLEYFFTEAPSSM 502

Query: 351 RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILG 410
           RSLATSLSWASLAMGYY S+V+VSIVN+IT +  +TPWL G ++N Y L+ FYWLMC+L 
Sbjct: 503 RSLATSLSWASLAMGYYLSSVIVSIVNSITGSSGNTPWLRGKSINRYKLDYFYWLMCVLS 562

Query: 411 GLNFLHFLFWAARYKYSSTG 430
             NFLH+LFWA RYKY STG
Sbjct: 563 AANFLHYLFWAMRYKYRSTG 582

Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1

 Score =  596 bits (1536), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 291/429 (67%), Positives = 343/429 (79%), Gaps = 13/429 (3%)

Query: 2   LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV 61
           LF GLY+V+LG+GGIKGSL  HGAEQ+DE T  GRKQRS FFNYYVFCLSCGAL+AVTFV
Sbjct: 149 LFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCLSCGALVAVTFV 208

Query: 62  VWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCK 121
           VWIEDNKGW+WGFG+ST +I LSI +FLLGS FY+NKIP GSPLTTIFKVL AA   +C 
Sbjct: 209 VWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKVLLAASIVSCS 268

Query: 122 SKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQC 181
           SK SSN  T              E  S  +EK PSQ  T  +  LN+A+     +  ++C
Sbjct: 269 SKTSSNHFTS------------REVQSEHEEKTPSQSLTNSLTCLNKAIEGKTHHIWLEC 316

Query: 182 TVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFP 241
           TV++VE+VKIV+K+ PIF  TIMLNCCLAQLST+SV QAATMN K+ +  VP ASLPVFP
Sbjct: 317 TVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKIVNFNVPSASLPVFP 376

Query: 242 VIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA 301
           V+F+LILAP Y+H+IIPFARKVTK+E+GITHLQRIG GL+LSIVAMAVAALVE+KRK+VA
Sbjct: 377 VVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKRKQVA 436

Query: 302 VNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWAS 361
             +GL++S E LPITFLW+ALQYLFLGSADLFTLAG++EFFFT+AP SMRSLATSLSWAS
Sbjct: 437 REAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSLSWAS 496

Query: 362 LAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWA 421
           LA+GYY S+V+V IVN +T +   +PWL G  LN   L+ FYWLMC+L  +NFLH+LFWA
Sbjct: 497 LALGYYLSSVMVPIVNRVTKSAGQSPWL-GEKLNRNRLDLFYWLMCVLSVVNFLHYLFWA 555

Query: 422 ARYKYSSTG 430
            RYKY STG
Sbjct: 556 KRYKYISTG 564

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM20|PTR54_ARATH Probable peptide/nitrate transporter At5g62730 OS=Arabidopsis thaliana GN=At5g62730 PE=2 SV=2

 Score =  583 bits (1503), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/433 (66%), Positives = 343/433 (79%), Gaps = 14/433 (3%)

Query: 2   LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV 61
           LF GLY+VALGVGGIKGSL PHGAEQ+DE T  GR+QRS FFNY++F LSCGALIAVT V
Sbjct: 162 LFVGLYLVALGVGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTVV 221

Query: 62  VWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCK 121
           VW+EDNKGW +GFG+STA IL+S+P+FL GS  YR K+P+GSP+TT+FKVLTAA++   K
Sbjct: 222 VWLEDNKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAKYK 281

Query: 122 SKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPI-VQ 180
            + +S  V   H+   C ++S  + N +  +            FL   +R   + P  ++
Sbjct: 282 KRRTSRIVVTCHTRNDC-DDSVTKQNCDGDDGFLGS-------FLGEVVRERESLPRPLR 333

Query: 181 CTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVF 240
           CT ++V++VKIV+KI PIFMSTIMLNCCLAQLSTFSVQQA+TMNTKLGS  VPPA+LPVF
Sbjct: 334 CTEEQVKDVKIVIKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALPVF 393

Query: 241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 300
           PV+F++ILAP YNH+++P ARK TKTE GITHLQRIGTGL+LSIVAMAVAALVE KRK V
Sbjct: 394 PVVFMMILAPTYNHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRKHV 453

Query: 301 AVNSGLVNSSE-----PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLAT 355
            V+    N+S      PLPITFLWVA+QY+FLGSADLFTLAGMMEFFFT+AP +MRSLAT
Sbjct: 454 VVSCCSNNNSSSYSSSPLPITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRSLAT 513

Query: 356 SLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFL 415
           SLSWASLAMGYYFS+VLVS VN +T    H PWL G NLN YHLERFYWLMC+L G+NFL
Sbjct: 514 SLSWASLAMGYYFSSVLVSAVNFVTGLNHHNPWLLGENLNQYHLERFYWLMCVLSGINFL 573

Query: 416 HFLFWAARYKYSS 428
           H+LFWA+RY Y S
Sbjct: 574 HYLFWASRYVYRS 586

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  317 bits (812), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 166/433 (38%), Positives = 266/433 (61%), Gaps = 20/433 (4%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           M F GLY++ALG GGIK  ++  GA+Q+D+T    R ++++FFN++ F ++ GAL++ + 
Sbjct: 159 MFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSL 218

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           +VWI++N+GW  GFGI T  + L+I  F  G+P YR + P GSP+T I +V+ A+     
Sbjct: 219 LVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASF---- 274

Query: 121 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRAL--------RN 172
             + SS  V E     T   E++D+ ++    +    + T+D ++L++A           
Sbjct: 275 --RKSSVKVPE---DATLLYETQDKNSAIAGSR--KIEHTDDCQYLDKAAVISEEESKSG 327

Query: 173 NPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKV 232
           + +     CTV +VEE+KI++++FPI+ S I+ +   AQ+ST  VQQ   MN K+GS ++
Sbjct: 328 DYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQL 387

Query: 233 PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAAL 292
           PPA+L  F    ++I  P+Y+  I+P ARK T  + G T +QR+G GL +S++ MA AA+
Sbjct: 388 PPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAI 447

Query: 293 VEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRS 352
           VEI R  +A + GLV S  P+PI+ LW   QY  LG+A++F   G +EFF+  +P +MRS
Sbjct: 448 VEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRS 507

Query: 353 LATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGL 412
           L ++L+  + A+G Y S++++++V   T+      W+   NLN  HL+ F+WL+  L  +
Sbjct: 508 LCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWI-SDNLNSGHLDYFFWLLAGLSLV 566

Query: 413 NFLHFLFWAARYK 425
           N   + F AARYK
Sbjct: 567 NMAVYFFSAARYK 579

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  301 bits (770), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 165/437 (37%), Positives = 259/437 (59%), Gaps = 26/437 (5%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           + F  LY++ALG GGIK  ++  GA+Q+DE  +  + ++S+FFN++ F ++ GALIA T 
Sbjct: 141 VFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATV 200

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           +VWI+ N GW WGFG+ T  +++++  F  GS FYR + P GSPLT IF+V+ AA     
Sbjct: 201 LVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAF---- 256

Query: 121 KSKNSSNAVTEVHS--SPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRA--------L 170
             +  S  V E  S    T  +ES  +G+  +         T+++KF ++A        +
Sbjct: 257 --RKISVKVPEDKSLLFETADDESNIKGSRKLVH-------TDNLKFFDKAAVESQSDSI 307

Query: 171 RNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG-S 229
           ++    P   C+V +VEE+K ++ + P++ + I+     +Q+ST  V Q  TM+  +G +
Sbjct: 308 KDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKN 367

Query: 230 LKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAV 289
            ++P ASL +F  + +L   PVY+  IIP ARK T+ E G T LQR+G GL++SI AM  
Sbjct: 368 FEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMIT 427

Query: 290 AALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS 349
           A ++E+ R    V +      + + ++  W   QYL +G A++FT  G +EFF+  AP +
Sbjct: 428 AGVLEVVRLDY-VKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDA 486

Query: 350 MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCIL 409
           MRSL ++LS  ++A+G Y STVLV++V  IT       W+   NLN  HL+ F++L+  L
Sbjct: 487 MRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWI-PDNLNRGHLDYFFYLLATL 545

Query: 410 GGLNFLHFLFWAARYKY 426
             LNFL +L+ + RYKY
Sbjct: 546 SFLNFLVYLWISKRYKY 562

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSF0|PTR34_ARATH Probable peptide/nitrate transporter At3g25260 OS=Arabidopsis thaliana GN=At3g25260 PE=2 SV=1

 Score =  298 bits (764), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 172/429 (40%), Positives = 248/429 (57%), Gaps = 52/429 (12%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR--SAFFNYYVFCLSCGALIAV 58
           +LF GLY +A+GVGG+KGSL  HG +Q        R QR  S FFN+Y F +  G  +AV
Sbjct: 134 VLFTGLYAIAIGVGGVKGSLPAHGGDQIGT-----RNQRLISGFFNWYFFSVCLGGFLAV 188

Query: 59  TFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFN 118
           T +VWIE+N GW   F ISTA +  +I +F+ G P YR K P GSPLT I  V  +A  N
Sbjct: 189 TLMVWIEENIGWSSSFTISTAVLASAIFVFVAGCPMYRFKRPAGSPLTRIVNVFVSAARN 248

Query: 119 TCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPI 178
             +    +  VT+ H+S   S                        KFLN+A  NN     
Sbjct: 249 RNRFVTDAEVVTQNHNSTDKSIHH------------------NKFKFLNKAKLNN----- 285

Query: 179 VQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG-SLKVPPASL 237
            + +  +VEE +  + + PIF STI++NCC+AQ+ TFSVQQ    N KL  S ++P ASL
Sbjct: 286 -KISATQVEETRTFLALLPIFGSTIIMNCCVAQMGTFSVQQGMVTNRKLSRSFEIPVASL 344

Query: 238 PVFPVIFILILAPVYNHVIIPFARKV-TKTEMGIT-HLQRIGTGLILSIVAMAVAALVEI 295
              P++ +L    +Y      F +++ + +E   + +L+RIG GL L+ ++MAVAA+VE+
Sbjct: 345 NAIPLLCMLSSLALYE----LFGKRILSNSERSSSFNLKRIGYGLALTSISMAVAAIVEV 400

Query: 296 KRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLAT 355
           KRK  AV++        + I+  W+ LQ++ L  +D+ T+ GM+EFFF ++P SMRS++T
Sbjct: 401 KRKHEAVHNN-------IKISVFWLELQFVMLSLSDMLTVGGMLEFFFRESPASMRSMST 453

Query: 356 SLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFL 415
           +L W S AMG++ S+VLV +VN IT   R        +LN   LE FY ++C+L  LN  
Sbjct: 454 ALGWCSTAMGFFLSSVLVEVVNGITGWLR-------DDLNESRLELFYLVLCVLNTLNLF 506

Query: 416 HFLFWAARY 424
           +++FWA RY
Sbjct: 507 NYIFWAKRY 515

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 252/441 (57%), Gaps = 32/441 (7%)

Query: 3   FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV 62
           F  LY++ALG GGIK  ++  GA+Q+D+T +  ++ +S+FFN++ F ++ GA+IA + +V
Sbjct: 143 FIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLV 202

Query: 63  WIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKS 122
           WI+ N GW WG G+ T  + +++  F  GS FYR + P GSPLT + +V+ A+       
Sbjct: 203 WIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVAS------C 256

Query: 123 KNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFL-------------NRA 169
           + S   + E        +ES    N + +  +   +  E  K L             N+ 
Sbjct: 257 RKSKVKIPE--------DESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKG 308

Query: 170 LRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG- 228
              + ++ +  CTV +VEE+K ++++ PI+ + I+     +Q+ T  V Q  T++  +G 
Sbjct: 309 AAKSSSWKL--CTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGP 366

Query: 229 SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMA 288
           + K+P ASL +F  + +L  APVY+ +I+PFARK T  E G T LQRIG GL++SI +M 
Sbjct: 367 NFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMV 426

Query: 289 VAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL 348
            A ++E+ R        L N  E +P+T  W   QY  +G A++FT  G +EFF+  AP 
Sbjct: 427 SAGILEVARLNYVQTHNLYN-EETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPD 485

Query: 349 SMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCI 408
           +MRSL ++LS  ++A G Y ST LV++V  +T +     W+   NLN+ HL+ F+WL+  
Sbjct: 486 AMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWI-AKNLNNGHLDYFFWLLAG 544

Query: 409 LGGLNFLHFLFWAARYKYSST 429
           L  LNFL +L+ A  Y Y  T
Sbjct: 545 LSFLNFLVYLWIAKWYTYKKT 565

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSE8|PTR35_ARATH Putative peptide/nitrate transporter At3g25280 OS=Arabidopsis thaliana GN=At3g25280 PE=1 SV=1

 Score =  291 bits (744), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 172/430 (40%), Positives = 247/430 (57%), Gaps = 48/430 (11%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR--SAFFNYYVFCLSCGALIAV 58
           +LF GLY +A+G GG+K SL  HG +Q D      R  R  S FF++  F +  G L+AV
Sbjct: 134 ILFTGLYAMAIGTGGLKASLPSHGGDQIDR-----RNPRLISRFFDWLYFSICSGCLLAV 188

Query: 59  TFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFN 118
           T V+WIE+ KGW W F IS   +  ++ IF +G PFYR K P GSPL  I  V+ +A   
Sbjct: 189 TVVLWIEEKKGWIWSFNISVGILATALCIFTVGLPFYRFKRPNGSPLKKIAIVIISA--- 245

Query: 119 TCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPI 178
             +++N S+   E+         S  + NS+ K           +K++++A  N      
Sbjct: 246 -ARNRNKSDLDEEMMRGLI----SIYKNNSHNK-----------LKWIDKATLNK----- 284

Query: 179 VQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKL-GSLKVPPASL 237
              +  EVEE +  + + PIF STI+++CC+AQLSTFS QQ   MN KL  S ++P  SL
Sbjct: 285 -NISETEVEETRTFLGLLPIFGSTIVMSCCVAQLSTFSAQQGMLMNKKLFHSFEIPVPSL 343

Query: 238 PVFPVIFILILAPVYNHVIIPFARKV---TKTEMGITHLQRIGTGLILSIVAMAVAALVE 294
              P+IF+L+  P+Y      F +K+           +L+RIG GL LS V+MAV+A+VE
Sbjct: 344 TAIPLIFMLLSIPLYEF----FGKKISSGNNNRSSSFNLKRIGLGLALSSVSMAVSAIVE 399

Query: 295 IKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA 354
            KRK   V++          I+ LW+  QYL L  +D+ TL GM+EFF+ +AP +M+S++
Sbjct: 400 AKRKHEVVHNN-------FRISVLWLVFQYLMLSVSDMLTLGGMLEFFYREAPSNMKSIS 452

Query: 355 TSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNF 414
           T+L W S A+G++ ST LV + N +T    H  WL G +LN   LE FY L+C+L  LN 
Sbjct: 453 TALGWCSTALGFFLSTTLVEVTNAVTGRLGH-QWLGGEDLNKTRLELFYVLLCVLNTLNL 511

Query: 415 LHFLFWAARY 424
           L+++FWA RY
Sbjct: 512 LNYIFWAKRY 521

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1

 Score =  287 bits (735), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 166/428 (38%), Positives = 245/428 (57%), Gaps = 25/428 (5%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           + F  LY+VALG G +K ++  HGA+Q+ ++     K+ S++FN   F  S G LIA+T 
Sbjct: 162 IFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIALTL 221

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           +VW++ + G   GFG+S A + + I   + G+ ++RNK P  S  T I  V+ AAI    
Sbjct: 222 LVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIAHVIVAAIL--- 278

Query: 121 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRAL-----RNNPA 175
           K K +S       S P   +      N  V        P    +FL++A       N   
Sbjct: 279 KRKLAS------PSDPRMLHGDHHVANDVVPSSTLPHTPR--FRFLDKACIKIQDTNTKE 330

Query: 176 YPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKL-GSLKVPP 234
            P   CTV +VE+VK ++ + PIF STI+ N  LAQL TFSVQQ ++MNT+L  S  +PP
Sbjct: 331 SPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSFHIPP 390

Query: 235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVE 294
           ASL   P I ++ L P+Y+  ++PFARK+T    GI  L RIG GL LS  +M  AA++E
Sbjct: 391 ASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLE 450

Query: 295 IKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA 354
            KR+  +V  G +       ++  W+  Q+L  G +++FT  G++EFF+  +   M S  
Sbjct: 451 KKRRDSSVLDGRI-------LSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFL 503

Query: 355 TSLSWASLAMGYYFSTVLVSIVNNITSTYRHTP-WLFGSNLNHYHLERFYWLMCILGGLN 413
            +L++ S + G+YFS+VLVS+VN ITST   +  WL  ++LN   L+ FYWL+ +L  LN
Sbjct: 504 MALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLNKDRLDLFYWLLAVLSLLN 563

Query: 414 FLHFLFWA 421
           FL +LFW+
Sbjct: 564 FLSYLFWS 571

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  274 bits (701), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 146/426 (34%), Positives = 246/426 (57%), Gaps = 43/426 (10%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           +LF+GLY++ALG GGIK  ++  GA+Q+D+T    R ++++FFN++ F ++ GA ++ T 
Sbjct: 160 VLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAFVSSTV 219

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           +VWI++N GW+ GF I T  + L+   F  G+P YR + P GSP+T++ +VL AA     
Sbjct: 220 LVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAAY---- 275

Query: 121 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQ 180
             + S+  V E         +S DEG++N                           P   
Sbjct: 276 --RKSNLKVPE---------DSTDEGDANTN-------------------------PWKL 299

Query: 181 CTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVF 240
           CTV +VEEVKI++++ PI+ S I+ +   +Q+ T  VQQ   M   +G  ++PPA+L +F
Sbjct: 300 CTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIGLFEIPPATLGMF 359

Query: 241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 300
               +LI  P+Y+ VI+P  R+ T    G T LQR+G GL +S++++  AA+VE  R ++
Sbjct: 360 DTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIVETVRLQL 419

Query: 301 AVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWA 360
           A +  LV S + +P+   W   QY  +G+A +F   G +EFF+  +P SMRSL ++ +  
Sbjct: 420 ARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCSAWALL 479

Query: 361 SLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFW 420
           +  +G Y S++++++V  ++       W+   N+N+ HL+ F+WL+  LG +N   F+F+
Sbjct: 480 TTTLGNYLSSLIITLVAYLSG---KDCWIPSDNINNGHLDYFFWLLVSLGSVNIPVFVFF 536

Query: 421 AARYKY 426
           + +Y +
Sbjct: 537 SVKYTH 542

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
297734029	610	unnamed protein product [Vitis vinifera]	1.0	0.706	0.763	0.0
225456664	579	PREDICTED: nitrate transporter 1.2-like	1.0	0.744	0.763	0.0
255540909	591	nitrate transporter, putative [Ricinus c	1.0	0.729	0.774	0.0
224121540	481	predicted protein [Populus trichocarpa]	0.993	0.889	0.773	0.0
356513553	590	PREDICTED: nitrate transporter 1.2-like	1.0	0.730	0.741	0.0
356565069	593	PREDICTED: nitrate transporter 1.2-like	1.0	0.726	0.743	0.0
255558232	473	nitrate transporter, putative [Ricinus c	0.995	0.906	0.729	0.0
359473379	616	PREDICTED: nitrate transporter 1.2-like	0.988	0.691	0.730	0.0
356500557	580	PREDICTED: nitrate transporter 1.2-like	0.997	0.741	0.706	0.0
224100445	575	predicted protein [Populus trichocarpa]	0.986	0.739	0.719	0.0

>gi|297734029|emb|CBI15276.3| unnamed protein product [Vitis vinifera]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/431 (76%), Positives = 371/431 (86%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           MLFAGLY+VALGVGGIKGSL PHGAEQ+D+ T  GRKQRS FFNYYVF LSCGALIAVTF
Sbjct: 178 MLFAGLYLVALGVGGIKGSLPPHGAEQFDDNTPKGRKQRSTFFNYYVFSLSCGALIAVTF 237

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           VVWIEDNKGWQWGFGISTA+IL+SIPIFLLGS  YR KIPTGSP+TTI KVL AAI N  
Sbjct: 238 VVWIEDNKGWQWGFGISTASILISIPIFLLGSATYRTKIPTGSPITTIVKVLVAAICNAY 297

Query: 121 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQ 180
           K +N SN+V  + +SP+ + E   +  S  KE VP Q PTE +KFLN A+ + P +  ++
Sbjct: 298 KLRNCSNSVMSMATSPSYTTEIGGKEESCSKEMVPRQAPTESLKFLNNAVIDKPFHSALE 357

Query: 181 CTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVF 240
           CTVK+VEEVKIV++I PIF  TIMLNCCLAQLSTFSVQQAATMNTKLG+LKVPPASLP+F
Sbjct: 358 CTVKQVEEVKIVLRILPIFACTIMLNCCLAQLSTFSVQQAATMNTKLGTLKVPPASLPIF 417

Query: 241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 300
           PV+FI+ILAP YNH+IIPF R+ TKTEMGITHLQRIGTGLILSIVAM VAA VEIKRKRV
Sbjct: 418 PVLFIMILAPTYNHIIIPFTRRTTKTEMGITHLQRIGTGLILSIVAMVVAAFVEIKRKRV 477

Query: 301 AVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWA 360
           A  SGLV+SSEPLPITF WVALQYLFLGSADLFTLAG+MEFFFT+AP SMRSLAT+LSWA
Sbjct: 478 AAESGLVHSSEPLPITFFWVALQYLFLGSADLFTLAGLMEFFFTEAPTSMRSLATALSWA 537

Query: 361 SLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFW 420
           SLAMGYY S+VLVSIVN++T++Y H  WLFG+NLNHYHLE+FYWLMC L GLNFLH+L W
Sbjct: 538 SLAMGYYLSSVLVSIVNSVTNSYSHHAWLFGNNLNHYHLEKFYWLMCGLSGLNFLHYLLW 597

Query: 421 AARYKYSSTGP 431
           A+RYKY +  P
Sbjct: 598 ASRYKYRTASP 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456664|ref|XP_002271787.1| PREDICTED: nitrate transporter 1.2-like [Vitis vinifera]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/431 (76%), Positives = 371/431 (86%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           MLFAGLY+VALGVGGIKGSL PHGAEQ+D+ T  GRKQRS FFNYYVF LSCGALIAVTF
Sbjct: 147 MLFAGLYLVALGVGGIKGSLPPHGAEQFDDNTPKGRKQRSTFFNYYVFSLSCGALIAVTF 206

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           VVWIEDNKGWQWGFGISTA+IL+SIPIFLLGS  YR KIPTGSP+TTI KVL AAI N  
Sbjct: 207 VVWIEDNKGWQWGFGISTASILISIPIFLLGSATYRTKIPTGSPITTIVKVLVAAICNAY 266

Query: 121 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQ 180
           K +N SN+V  + +SP+ + E   +  S  KE VP Q PTE +KFLN A+ + P +  ++
Sbjct: 267 KLRNCSNSVMSMATSPSYTTEIGGKEESCSKEMVPRQAPTESLKFLNNAVIDKPFHSALE 326

Query: 181 CTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVF 240
           CTVK+VEEVKIV++I PIF  TIMLNCCLAQLSTFSVQQAATMNTKLG+LKVPPASLP+F
Sbjct: 327 CTVKQVEEVKIVLRILPIFACTIMLNCCLAQLSTFSVQQAATMNTKLGTLKVPPASLPIF 386

Query: 241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 300
           PV+FI+ILAP YNH+IIPF R+ TKTEMGITHLQRIGTGLILSIVAM VAA VEIKRKRV
Sbjct: 387 PVLFIMILAPTYNHIIIPFTRRTTKTEMGITHLQRIGTGLILSIVAMVVAAFVEIKRKRV 446

Query: 301 AVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWA 360
           A  SGLV+SSEPLPITF WVALQYLFLGSADLFTLAG+MEFFFT+AP SMRSLAT+LSWA
Sbjct: 447 AAESGLVHSSEPLPITFFWVALQYLFLGSADLFTLAGLMEFFFTEAPTSMRSLATALSWA 506

Query: 361 SLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFW 420
           SLAMGYY S+VLVSIVN++T++Y H  WLFG+NLNHYHLE+FYWLMC L GLNFLH+L W
Sbjct: 507 SLAMGYYLSSVLVSIVNSVTNSYSHHAWLFGNNLNHYHLEKFYWLMCGLSGLNFLHYLLW 566

Query: 421 AARYKYSSTGP 431
           A+RYKY +  P
Sbjct: 567 ASRYKYRTASP 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540909|ref|XP_002511519.1| nitrate transporter, putative [Ricinus communis] gi|223550634|gb|EEF52121.1| nitrate transporter, putative [Ricinus communis]

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/431 (77%), Positives = 384/431 (89%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           MLF GLY+VALGVGGIKGSL  HGAEQ+DE TQ GRKQRSAFFNYYVFCLS GALIAVTF
Sbjct: 147 MLFTGLYLVALGVGGIKGSLPSHGAEQFDENTQQGRKQRSAFFNYYVFCLSFGALIAVTF 206

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
            VWIEDNKGWQWGFGISTATILLSIP+FLLGSP YRNK+P+GSP+TTI KVL AA++NTC
Sbjct: 207 AVWIEDNKGWQWGFGISTATILLSIPVFLLGSPTYRNKVPSGSPITTILKVLIAAVYNTC 266

Query: 121 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQ 180
           K +  +NAV  V +S + + E+ +  +S ++E+  +Q PTE ++FL+RA+ N    P ++
Sbjct: 267 KPQTPNNAVMGVDTSSSYTTETSEVEDSYIREEALNQTPTESLEFLDRAVMNKSINPTLR 326

Query: 181 CTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVF 240
           CTVK+VEEVK+V+KI PIFMSTIMLNCCLAQLSTFSVQQA+TMNTKLGSLKVPPASLPVF
Sbjct: 327 CTVKDVEEVKVVIKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKLGSLKVPPASLPVF 386

Query: 241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 300
           PVIFI+ILAP+YNH+I PFARKVTK+EMGITHLQRIGTGL+LSIVAMA+AALVE+KRK V
Sbjct: 387 PVIFIMILAPIYNHIISPFARKVTKSEMGITHLQRIGTGLVLSIVAMALAALVEMKRKGV 446

Query: 301 AVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWA 360
           A ++GL +S++PLPITFLW+ALQYLFLGSADLFTLAGMMEFFFT+APLSMRSLATSLSWA
Sbjct: 447 ATSAGLTDSAKPLPITFLWIALQYLFLGSADLFTLAGMMEFFFTEAPLSMRSLATSLSWA 506

Query: 361 SLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFW 420
           SLAMGYY S+VLVSIVN +T  YRHT WLFGSNLNHYHLERFYWLMCIL G+NFLH+LFW
Sbjct: 507 SLAMGYYLSSVLVSIVNAVTGAYRHTSWLFGSNLNHYHLERFYWLMCILSGINFLHYLFW 566

Query: 421 AARYKYSSTGP 431
           + RY+Y ST P
Sbjct: 567 SCRYRYKSTSP 577

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121540|ref|XP_002318610.1| predicted protein [Populus trichocarpa] gi|222859283|gb|EEE96830.1| predicted protein [Populus trichocarpa]

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/429 (77%), Positives = 377/429 (87%), Gaps = 1/429 (0%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           MLFAGLY+VALGVGGIKGSL PHGAEQ+DE T  GRKQRSAFFNYYVFCLSCGALIAVT 
Sbjct: 43  MLFAGLYLVALGVGGIKGSLPPHGAEQFDENTLQGRKQRSAFFNYYVFCLSCGALIAVTL 102

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           VVW+EDNKGWQWGFG+STATILLSIPIFL+GSP YR K+P GSP+TTIFKVL AA+++T 
Sbjct: 103 VVWVEDNKGWQWGFGVSTATILLSIPIFLIGSPVYRTKVPIGSPITTIFKVLAAAVYSTY 162

Query: 121 KSKNSSNAVTEVHSSPTCSNESRDEG-NSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIV 179
           K ++SSN+   + +S T       EG + N K K  SQ PTE ++F+NRA++N    P++
Sbjct: 163 KFRDSSNSAIGMDTSRTSYTTETSEGEDRNTKRKELSQTPTESLEFVNRAVKNKTVNPML 222

Query: 180 QCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPV 239
           +CT ++VEEVKIV++I PIFMSTIMLNCCLAQLSTFSVQQA+TMNT LGSLKVPPASLPV
Sbjct: 223 ECTAEQVEEVKIVLRILPIFMSTIMLNCCLAQLSTFSVQQASTMNTNLGSLKVPPASLPV 282

Query: 240 FPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKR 299
           FPVIFI+ILAP+YNH+IIPFARKVTK+EMGITHLQRIGTGL+LS+VAM VAALVE+KRKR
Sbjct: 283 FPVIFIMILAPIYNHIIIPFARKVTKSEMGITHLQRIGTGLVLSVVAMVVAALVEMKRKR 342

Query: 300 VAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW 359
           VA NSGLVNS++PLPITFLW+ALQYLFLGSADLFTLAGMMEFFFT+AP SMRSLATSLSW
Sbjct: 343 VAANSGLVNSTKPLPITFLWIALQYLFLGSADLFTLAGMMEFFFTEAPKSMRSLATSLSW 402

Query: 360 ASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLF 419
           ASLAMGYY S+VLVS++N IT  YR TPWLFGSNLN Y LERFYWLMCIL GLN  H+LF
Sbjct: 403 ASLAMGYYLSSVLVSLINTITGRYRDTPWLFGSNLNKYRLERFYWLMCILSGLNLSHYLF 462

Query: 420 WAARYKYSS 428
           WA+RYKY S
Sbjct: 463 WASRYKYKS 471

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513553|ref|XP_003525477.1| PREDICTED: nitrate transporter 1.2-like [Glycine max]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/434 (74%), Positives = 372/434 (85%), Gaps = 3/434 (0%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           MLFAGLY+VALGVGGIKGSL PHGAEQ+DE T  GRKQRSAFFNY+VF LSCGALIAVTF
Sbjct: 153 MLFAGLYLVALGVGGIKGSLPPHGAEQFDENTPEGRKQRSAFFNYFVFSLSCGALIAVTF 212

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           VVWIEDNKGW+WG  +STA+ILLSIP+F+LGS  YR KIP GSP+T++FKVL AAI N C
Sbjct: 213 VVWIEDNKGWKWGLVVSTASILLSIPVFILGSHKYRTKIPAGSPITSMFKVLVAAICNNC 272

Query: 121 KSKNSSNAVTEVHSSPTCSNESRD--EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPI 178
           K+KNS+NAV  + +SP+ + E  D  E +   KE V  Q  TE++KFLN+A+     +P+
Sbjct: 273 KAKNSTNAVRSMTTSPSHATEREDGEEESKTTKEVVQGQTLTENLKFLNKAVMEPAVHPM 332

Query: 179 VQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLP 238
           ++CTVKEVEEVKIV +I PIFMSTIMLNCCLAQLSTFSVQQ+ATM+T LGS KVPPASLP
Sbjct: 333 LECTVKEVEEVKIVTRILPIFMSTIMLNCCLAQLSTFSVQQSATMSTMLGSFKVPPASLP 392

Query: 239 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRK 298
           VFPV+F++ILAP+YNH+I+PFARK TKTEMGITHLQRIGTGL LSIVAMAVAALVE KRK
Sbjct: 393 VFPVLFVMILAPLYNHIIVPFARKATKTEMGITHLQRIGTGLFLSIVAMAVAALVETKRK 452

Query: 299 RVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS 358
           + A   GL++S++PLPITFLWVALQY+FLGSADLFTLAGMMEFFFT+AP SMRSLAT+LS
Sbjct: 453 KTAFKFGLLDSAKPLPITFLWVALQYIFLGSADLFTLAGMMEFFFTEAPWSMRSLATALS 512

Query: 359 WASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFL 418
           WASLAMGY+ STVLVS +N +T  + HTPWL G+NLNHYHLERFYWLMC+L GLNF+HFL
Sbjct: 513 WASLAMGYFLSTVLVSTINKVTGAFGHTPWLLGANLNHYHLERFYWLMCVLSGLNFVHFL 572

Query: 419 FWAARYKYS-STGP 431
           FWA  YKY  ST P
Sbjct: 573 FWANSYKYRCSTKP 586

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565069|ref|XP_003550767.1| PREDICTED: nitrate transporter 1.2-like [Glycine max]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/436 (74%), Positives = 371/436 (85%), Gaps = 5/436 (1%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           MLFAGLY+VALGVGGIKGSL PHGAEQ+DE T  GRKQRS+FFNY+VF LSCGALIAVTF
Sbjct: 157 MLFAGLYLVALGVGGIKGSLPPHGAEQFDENTPEGRKQRSSFFNYFVFSLSCGALIAVTF 216

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           VVWIEDNKGW+WG  +STA+ILLSIP+FLLGS  YR KIP GSP+T++FKVL AAI N C
Sbjct: 217 VVWIEDNKGWKWGLVVSTASILLSIPVFLLGSHKYRTKIPAGSPITSMFKVLVAAICNNC 276

Query: 121 KSKNSSNAVTEVHSSPTCSNESRD--EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPI 178
           K+KNSSNAV  + + P+ + E +D  E +   KE VP Q  T+++KFLN+A+     +P+
Sbjct: 277 KAKNSSNAVISMTTGPSHATERKDGEEQSKTRKEVVPGQTLTDNLKFLNKAVMEPAVHPM 336

Query: 179 VQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLP 238
           ++CTVKEVEEVKIV +I PIFMSTIMLNCCLAQLSTFSVQQ+ATMNT LGS KVPPASLP
Sbjct: 337 LECTVKEVEEVKIVARILPIFMSTIMLNCCLAQLSTFSVQQSATMNTMLGSFKVPPASLP 396

Query: 239 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRK 298
           VFPV+FI+ILAP+YNH+I+PFARK TKTEMGITHLQRIGTGL LSIVAMAVAALVE KRK
Sbjct: 397 VFPVLFIMILAPLYNHIIVPFARKATKTEMGITHLQRIGTGLFLSIVAMAVAALVETKRK 456

Query: 299 RVAVNSGLVNSSE-PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL 357
           + A   GL++S + PLPITFLWVALQY+FLGSADLFTLAGMMEFFFT+AP SMRSLAT+L
Sbjct: 457 KTATKFGLLDSPKVPLPITFLWVALQYIFLGSADLFTLAGMMEFFFTEAPWSMRSLATAL 516

Query: 358 SWASLAMGYYFSTVLVSIVNNITSTY-RHTPWLFGSNLNHYHLERFYWLMCILGGLNFLH 416
           SWASLAMGY+ STVLVS +N +T  +  HTPWL G+NLNHYHLERFYWLMC L GLNF+H
Sbjct: 517 SWASLAMGYFLSTVLVSTINKVTGAFGSHTPWLLGANLNHYHLERFYWLMCALSGLNFVH 576

Query: 417 FLFWAARYKYS-STGP 431
           FLFWA  YKY  ST P
Sbjct: 577 FLFWANSYKYRCSTKP 592

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558232|ref|XP_002520143.1| nitrate transporter, putative [Ricinus communis] gi|223540635|gb|EEF42198.1| nitrate transporter, putative [Ricinus communis]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/429 (72%), Positives = 359/429 (83%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           MLF GLY+VALGVGGIKGSL  HGAEQ+DE++  GRKQRS FFNY+VFCLSCG LIAVTF
Sbjct: 41  MLFIGLYLVALGVGGIKGSLPAHGAEQFDESSPQGRKQRSTFFNYFVFCLSCGGLIAVTF 100

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           VVWIEDNKGW+WGFGIST  I LSIPIFL G+P YRNKIP+GS LTTI KVL AA  NTC
Sbjct: 101 VVWIEDNKGWEWGFGISTIAIFLSIPIFLFGTPTYRNKIPSGSSLTTILKVLVAAAINTC 160

Query: 121 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQ 180
            S++ SNAV  + ++P+  N + +      KE   ++  T+    LNRA+   P +  ++
Sbjct: 161 TSRSPSNAVANLITNPSIVNATSEGTKEKSKEMASTETATKAFSCLNRAVVKIPVHSALE 220

Query: 181 CTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVF 240
           CTVK+VEEVKIV+KI PIF  TIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLP+F
Sbjct: 221 CTVKQVEEVKIVLKILPIFACTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPIF 280

Query: 241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 300
           PV+FI+ILAP+Y+H IIPFARKVTK+EMGITHLQRIG GL+LSIVAMA AALVEIKRKRV
Sbjct: 281 PVVFIMILAPIYDHFIIPFARKVTKSEMGITHLQRIGVGLVLSIVAMATAALVEIKRKRV 340

Query: 301 AVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWA 360
           A +SGL++S EPLPITFLW+A QYLFLGSADLFTLAG++EFFFT+AP SMRSLATSLSWA
Sbjct: 341 ATSSGLLDSEEPLPITFLWIAFQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSLSWA 400

Query: 361 SLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFW 420
           SLAMGYY S+V+VSIVN IT  Y+H PWL GSN+NHY LERFYWLMC+L  +NFLH+LFW
Sbjct: 401 SLAMGYYLSSVVVSIVNTITGNYKHHPWLSGSNINHYQLERFYWLMCVLSAVNFLHYLFW 460

Query: 421 AARYKYSST 429
              YKY ST
Sbjct: 461 TNWYKYRST 469

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473379|ref|XP_002269693.2| PREDICTED: nitrate transporter 1.2-like [Vitis vinifera]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/431 (73%), Positives = 360/431 (83%), Gaps = 5/431 (1%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           MLF GLY+VALGVGGIKGSL  HGAEQ DE+T  GRKQRS FFNY+VFCLSCGALIAVT 
Sbjct: 178 MLFVGLYLVALGVGGIKGSLPAHGAEQLDESTPQGRKQRSTFFNYFVFCLSCGALIAVTL 237

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           VVW+EDNKGW+WGFGI+T +I  SIP+FL GS  YRNKIP+GSPLTTIFKVL AA  N  
Sbjct: 238 VVWVEDNKGWEWGFGIATISIFASIPVFLGGSATYRNKIPSGSPLTTIFKVLIAATLN-- 295

Query: 121 KSKNSSNAVTEVHSSPTC-SNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIV 179
             ++ SNAV  + +SP+  +  S++    N K  VP+Q PTE + FLNRA+ N P Y  V
Sbjct: 296 --RSPSNAVASMATSPSYPTQNSKEPEEENGKAIVPAQTPTESLGFLNRAVVNKPVYKAV 353

Query: 180 QCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPV 239
           +CTV++VEEVKIV+KI PIF  TIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLP+
Sbjct: 354 ECTVQQVEEVKIVIKILPIFACTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPI 413

Query: 240 FPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKR 299
           FPV+F++ LAP+Y+H IIPFARKVTKTEMGI+HLQRIG GL+ SI+AMAVAALVE+KRKR
Sbjct: 414 FPVLFMMTLAPIYDHFIIPFARKVTKTEMGISHLQRIGIGLVFSIIAMAVAALVEVKRKR 473

Query: 300 VAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW 359
           VA N GL++S+E LPITF W+A QYLFLGSADLFTLAG+MEFFFT+AP  MRSLATSLSW
Sbjct: 474 VASNLGLIDSTEQLPITFFWIAFQYLFLGSADLFTLAGLMEFFFTEAPTGMRSLATSLSW 533

Query: 360 ASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLF 419
           ASLAMGYY S+V+VSIVNN   +  H PWL G  LNHYHLERFYWLMC+L GLNFLH+LF
Sbjct: 534 ASLAMGYYLSSVIVSIVNNFLGSLNHRPWLSGRKLNHYHLERFYWLMCVLTGLNFLHYLF 593

Query: 420 WAARYKYSSTG 430
           WA RYKY STG
Sbjct: 594 WACRYKYRSTG 604

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500557|ref|XP_003519098.1| PREDICTED: nitrate transporter 1.2-like [Glycine max]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/433 (70%), Positives = 367/433 (84%), Gaps = 3/433 (0%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           MLF GLY+VALGVGGIKGSL  HG EQ+DETT  GRKQRS FFNY+VFCLSCGALIAVTF
Sbjct: 145 MLFIGLYLVALGVGGIKGSLPAHGGEQFDETTPSGRKQRSTFFNYFVFCLSCGALIAVTF 204

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           VVWIEDNKGWQWGF IST +I +SIP+FL GSP Y+NKIP+GSPLTTI KVL AA+ N+C
Sbjct: 205 VVWIEDNKGWQWGFAISTISIFVSIPVFLAGSPTYKNKIPSGSPLTTILKVLIAALLNSC 264

Query: 121 KSKNSSNAVTEVHSSPTCSNESRDEGNSN-VKEKVPSQKPTEDIKFLNRALRNNPAYPIV 179
             KN+S+AV  + SSP+  +  R E     VK    ++ PT ++KFLN+A+ N P Y  +
Sbjct: 265 TYKNTSSAVVNMTSSPSNPHSGRTESQQETVKASTTTETPTSNLKFLNKAVTNKPRYSSL 324

Query: 180 QCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPV 239
           +CTV++VE+VK+V+K+ PIF  TI+LNCCLAQLSTFSV+QAATM+TKLGSLKVPP+SLPV
Sbjct: 325 ECTVQQVEDVKVVLKMLPIFACTIILNCCLAQLSTFSVEQAATMDTKLGSLKVPPSSLPV 384

Query: 240 FPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKR 299
           FPV+FI+ILAP+Y+H+IIP+ RK TK+EMGITHLQRIG GL+LSIVAMAVAA+VEIKRKR
Sbjct: 385 FPVVFIMILAPIYDHIIIPYTRKATKSEMGITHLQRIGFGLVLSIVAMAVAAIVEIKRKR 444

Query: 300 VAVNSGLVNS-SEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS 358
           VA  SGL++  ++PLPITFLW+A QYLFLGSADLFTLAG++EFFFT+AP+ MRSLATSLS
Sbjct: 445 VATQSGLLDDPTKPLPITFLWIAFQYLFLGSADLFTLAGLLEFFFTEAPIRMRSLATSLS 504

Query: 359 WASLAMGYYFSTVLVSIVNNITSTYRHT-PWLFGSNLNHYHLERFYWLMCILGGLNFLHF 417
           WASLAMGYY S+V+VSIVN++T    H  PWL G+N NHYHLE+FYWLMC+L GLNFLH+
Sbjct: 505 WASLAMGYYLSSVIVSIVNSVTGNGTHNKPWLSGANFNHYHLEKFYWLMCVLSGLNFLHY 564

Query: 418 LFWAARYKYSSTG 430
           L+WA +YKY  TG
Sbjct: 565 LYWATKYKYRGTG 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100445|ref|XP_002311879.1| predicted protein [Populus trichocarpa] gi|222851699|gb|EEE89246.1| predicted protein [Populus trichocarpa]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/428 (71%), Positives = 363/428 (84%), Gaps = 3/428 (0%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           MLF GLY+VALGVGGIKGSL  HGAEQ+DE+T  GRKQRS FFNY+VFCLSCGALIAVTF
Sbjct: 147 MLFTGLYLVALGVGGIKGSLPAHGAEQFDESTPQGRKQRSTFFNYFVFCLSCGALIAVTF 206

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           VVW+EDNKGW WGFGIST  ILLSIPIFL GS  YRNKIP+GSPL TI KVL AA  NTC
Sbjct: 207 VVWVEDNKGWVWGFGISTIAILLSIPIFLAGSAAYRNKIPSGSPLATISKVLVAAGVNTC 266

Query: 121 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQ 180
            S++S NA+  + +SP+  N +  +   N    +P++ PT+ + +LN+A+ N P +  ++
Sbjct: 267 MSRSSGNAIASLTTSPSNPNPTSKDAIDNSIAVMPAETPTKSLDWLNKAVVNKPIHSALE 326

Query: 181 CTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVF 240
           CTV++VEEVKIV+KIFPIF  TIMLNCCLAQLSTFSVQQA TM+TKLGSLKVPPASLPVF
Sbjct: 327 CTVQQVEEVKIVIKIFPIFACTIMLNCCLAQLSTFSVQQADTMDTKLGSLKVPPASLPVF 386

Query: 241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 300
           PV+FI++LAPVY+H+IIPFARK+TK+EMGITHLQRIG GL+LSI+AMAVAALVEIKRKRV
Sbjct: 387 PVVFIMMLAPVYDHLIIPFARKLTKSEMGITHLQRIGIGLVLSIIAMAVAALVEIKRKRV 446

Query: 301 AVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWA 360
           A NSGLV+    LPITF W+A QYLFLGSADLFTLAG++EFFFT+AP  MRSLA SLSWA
Sbjct: 447 AANSGLVDK---LPITFFWIAFQYLFLGSADLFTLAGLLEFFFTEAPAGMRSLAMSLSWA 503

Query: 361 SLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFW 420
           SLAMGYY S+V+VSIVNN+T   ++ PWL G+N+NH+HLERFYWL+C+L  LNFLH+LFW
Sbjct: 504 SLAMGYYLSSVIVSIVNNVTGNSKNRPWLSGTNINHHHLERFYWLLCVLSVLNFLHYLFW 563

Query: 421 AARYKYSS 428
           A RYKYS+
Sbjct: 564 ATRYKYST 571

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
TAIR|locus:2196739	585	NRT1:2 "AT1G69850" [Arabidopsi	0.997	0.735	0.638	1.4e-149
TAIR|locus:2170683	589	AT5G62730 [Arabidopsis thalian	0.972	0.711	0.623	1.3e-141
TAIR|locus:2205769	567	AT1G27040 [Arabidopsis thalian	0.965	0.733	0.636	2.1e-141
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.958	0.705	0.367	2.3e-71
TAIR|locus:2090325	515	AT3G25260 [Arabidopsis thalian	0.549	0.460	0.378	2.3e-70
TAIR|locus:2090230	521	AT3G25280 [Arabidopsis thalian	0.501	0.414	0.422	1.2e-69
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.953	0.721	0.356	5.6e-68
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.976	0.738	0.340	5.1e-67
TAIR|locus:2025886	591	AT1G59740 [Arabidopsis thalian	0.951	0.693	0.366	2.2e-66
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.563	0.445	0.317	1.8e-64

TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)]

 Score = 1460 (519.0 bits), Expect = 1.4e-149, P = 1.4e-149
 Identities = 281/440 (63%), Positives = 336/440 (76%)

Query:     1 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
             MLF GLY+VALGVGGIKGSLA HGAEQ+DE+T  GRKQRS FFNY+VFCL+CGAL+AVTF
Sbjct:   143 MLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFNYFVFCLACGALVAVTF 202

Query:    61 VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
             VVW+EDNKGW+WGFG+ST  I +SI IFL GS FYRNKIP GSPLTTI KVL AA    C
Sbjct:   203 VVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLTTILKVLLAASVKCC 262

Query:   121 KSKNSSNAVTEVHSSPT--CSNESRDEGNSNVKEKVPSQK----P----TEDIKFLNRAL 170
              S +SSNAV  +  SP+  C ++ + E  S  + + P Q+    P    T  +K LN A 
Sbjct:   263 SSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKPRQEEALPPRAQLTNSLKVLNGAA 322

Query:   171 RNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSL 230
                P + +++CT              PIF  TIMLNCCLAQLSTFSVQQAA+MNTK+GSL
Sbjct:   323 DEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCLAQLSTFSVQQAASMNTKIGSL 382

Query:   231 KVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVA 290
             K+PPASLP+FPV+FI+ILAP+Y+H+IIPFARK TKTE G+THLQRIG GL+LSI+AMAVA
Sbjct:   383 KIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETGVTHLQRIGVGLVLSILAMAVA 442

Query:   291 ALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM 350
             ALVEIKRK VA +SGL++S E LP+TFLW+ALQYLFLGSADLFTLAG++E+FFT+AP SM
Sbjct:   443 ALVEIKRKGVAKDSGLLDSKETLPVTFLWIALQYLFLGSADLFTLAGLLEYFFTEAPSSM 502

Query:   351 RXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILG 410
             R            MGYY S+V+VSIVN+IT +  +TPWL G ++N Y L+ FYWLMC+L 
Sbjct:   503 RSLATSLSWASLAMGYYLSSVIVSIVNSITGSSGNTPWLRGKSINRYKLDYFYWLMCVLS 562

Query:   411 GLNFLHFLFWAARYKYSSTG 430
               NFLH+LFWA RYKY STG
Sbjct:   563 AANFLHYLFWAMRYKYRSTG 582

GO:0005215 "transporter activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0090440 "abscisic acid transporter activity" evidence=IDA

TAIR|locus:2170683 AT5G62730 [Arabidopsis thaliana (taxid:3702)]

 Score = 1385 (492.6 bits), Expect = 1.3e-141, P = 1.3e-141
 Identities = 270/433 (62%), Positives = 319/433 (73%)

Query:     2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV 61
             LF GLY+VALGVGGIKGSL PHGAEQ+DE T  GR+QRS FFNY++F LSCGALIAVT V
Sbjct:   162 LFVGLYLVALGVGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTVV 221

Query:    62 VWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCK 121
             VW+EDNKGW +GFG+STA IL+S+P+FL GS  YR K+P+GSP+TT+FKVLTAA++   K
Sbjct:   222 VWLEDNKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAKYK 281

Query:   122 SKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPI-VQ 180
              + +S  V   H+   C ++S  + N +  +            FL   +R   + P  ++
Sbjct:   282 KRRTSRIVVTCHTRNDC-DDSVTKQNCDGDDGFLGS-------FLGEVVRERESLPRPLR 333

Query:   181 CTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVF 240
             CT              PIFMSTIMLNCCLAQLSTFSVQQA+TMNTKLGS  VPPA+LPVF
Sbjct:   334 CTEEQVKDVKIVIKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALPVF 393

Query:   241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 300
             PV+F++ILAP YNH+++P ARK TKTE GITHLQRIGTGL+LSIVAMAVAALVE KRK V
Sbjct:   394 PVVFMMILAPTYNHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRKHV 453

Query:   301 AV-----NSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXX 355
              V     N+    SS PLPITFLWVA+QY+FLGSADLFTLAGMMEFFFT+AP +MR    
Sbjct:   454 VVSCCSNNNSSSYSSSPLPITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRSLAT 513

Query:   356 XXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFL 415
                     MGYYFS+VLVS VN +T    H PWL G NLN YHLERFYWLMC+L G+NFL
Sbjct:   514 SLSWASLAMGYYFSSVLVSAVNFVTGLNHHNPWLLGENLNQYHLERFYWLMCVLSGINFL 573

Query:   416 HFLFWAARYKYSS 428
             H+LFWA+RY Y S
Sbjct:   574 HYLFWASRYVYRS 586

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)]

 Score = 1383 (491.9 bits), Expect = 2.1e-141, P = 2.1e-141
 Identities = 273/429 (63%), Positives = 320/429 (74%)

Query:     2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV 61
             LF GLY+V+LG+GGIKGSL  HGAEQ+DE T  GRKQRS FFNYYVFCLSCGAL+AVTFV
Sbjct:   149 LFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCLSCGALVAVTFV 208

Query:    62 VWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCK 121
             VWIEDNKGW+WGFG+ST +I LSI +FLLGS FY+NKIP GSPLTTIFKVL AA   +C 
Sbjct:   209 VWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKVLLAASIVSCS 268

Query:   122 SKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQC 181
             SK SSN  T           SR E  S  +EK PSQ  T  +  LN+A+     +  ++C
Sbjct:   269 SKTSSNHFT-----------SR-EVQSEHEEKTPSQSLTNSLTCLNKAIEGKTHHIWLEC 316

Query:   182 TXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFP 241
             T              PIF  TIMLNCCLAQLST+SV QAATMN K+ +  VP ASLPVFP
Sbjct:   317 TVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKIVNFNVPSASLPVFP 376

Query:   242 VIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA 301
             V+F+LILAP Y+H+IIPFARKVTK+E+GITHLQRIG GL+LSIVAMAVAALVE+KRK+VA
Sbjct:   377 VVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKRKQVA 436

Query:   302 VNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXX 361
               +GL++S E LPITFLW+ALQYLFLGSADLFTLAG++EFFFT+AP SMR          
Sbjct:   437 REAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSLSWAS 496

Query:   362 XXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWA 421
               +GYY S+V+V IVN +T +   +PWL G  LN   L+ FYWLMC+L  +NFLH+LFWA
Sbjct:   497 LALGYYLSSVMVPIVNRVTKSAGQSPWL-GEKLNRNRLDLFYWLMCVLSVVNFLHYLFWA 555

Query:   422 ARYKYSSTG 430
              RYKY STG
Sbjct:   556 KRYKYISTG 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 159/433 (36%), Positives = 246/433 (56%)

Query:     1 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
             M F GLY++ALG GGIK  ++  GA+Q+D+T    R ++++FFN++ F ++ GAL++ + 
Sbjct:   159 MFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSL 218

Query:    61 VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
             +VWI++N+GW  GFGI T  + L+I  F  G+P YR + P GSP+T I +V+ A+     
Sbjct:   219 LVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASF---- 274

Query:   121 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRAL------RNNP 174
               + SS  V E     T   E++D+ NS +      +  T+D ++L++A         + 
Sbjct:   275 --RKSSVKVPE---DATLLYETQDK-NSAIAGSRKIEH-TDDCQYLDKAAVISEEESKSG 327

Query:   175 AYPIVQ--CTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKV 232
              Y      CT             FPI+ S I+ +   AQ+ST  VQQ   MN K+GS ++
Sbjct:   328 DYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQL 387

Query:   233 PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAAL 292
             PPA+L  F    ++I  P+Y+  I+P ARK T  + G T +QR+G GL +S++ MA AA+
Sbjct:   388 PPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAI 447

Query:   293 VEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRX 352
             VEI R  +A + GLV S  P+PI+ LW   QY  LG+A++F   G +EFF+  +P +MR 
Sbjct:   448 VEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRS 507

Query:   353 XXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGL 412
                        +G Y S++++++V   T+      W+   NLN  HL+ F+WL+  L  +
Sbjct:   508 LCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWI-SDNLNSGHLDYFFWLLAGLSLV 566

Query:   413 NFLHFLFWAARYK 425
             N   + F AARYK
Sbjct:   567 NMAVYFFSAARYK 579

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2090325 AT3G25260 [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
 Identities = 100/264 (37%), Positives = 150/264 (56%)

Query:   164 KFLNRALRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATM 223
             KFLN+A  NN      + +              PIF STI++NCC+AQ+ TFSVQQ    
Sbjct:   276 KFLNKAKLNN------KISATQVEETRTFLALLPIFGSTIIMNCCVAQMGTFSVQQGMVT 329

Query:   224 NTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKV-TKTEMGIT-HLQRIGTGL 280
             N KL  S ++P ASL   P++ +L    +Y      F +++ + +E   + +L+RIG GL
Sbjct:   330 NRKLSRSFEIPVASLNAIPLLCMLSSLALYEL----FGKRILSNSERSSSFNLKRIGYGL 385

Query:   281 ILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMME 340
              L+ ++MAVAA+VE+KRK  AV++ +        I+  W+ LQ++ L  +D+ T+ GM+E
Sbjct:   386 ALTSISMAVAAIVEVKRKHEAVHNNI-------KISVFWLELQFVMLSLSDMLTVGGMLE 438

Query:   341 FFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 400
             FFF ++P SMR            MG++ S+VLV +VN IT       WL   +LN   LE
Sbjct:   439 FFFRESPASMRSMSTALGWCSTAMGFFLSSVLVEVVNGITG------WL-RDDLNESRLE 491

Query:   401 RFYWLMCILGGLNFLHFLFWAARY 424
              FY ++C+L  LN  +++FWA RY
Sbjct:   492 LFYLVLCVLNTLNLFNYIFWAKRY 515

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2090230 AT3G25280 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
 Identities = 98/232 (42%), Positives = 138/232 (59%)

Query:   197 PIFMSTIMLNCCLAQLSTFSVQQAATMNTKL-GSLKVPPASLPVFPVIFILILAPVYNHV 255
             PIF STI+++CC+AQLSTFS QQ   MN KL  S ++P  SL   P+IF+L+  P+Y   
Sbjct:   302 PIFGSTIVMSCCVAQLSTFSAQQGMLMNKKLFHSFEIPVPSLTAIPLIFMLLSIPLYEF- 360

Query:   256 IIPFARKVTK---TEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP 312
                F +K++          +L+RIG GL LS V+MAV+A+VE KRK   V++        
Sbjct:   361 ---FGKKISSGNNNRSSSFNLKRIGLGLALSSVSMAVSAIVEAKRKHEVVHNNF------ 411

Query:   313 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVL 372
               I+ LW+  QYL L  +D+ TL GM+EFF+ +AP +M+            +G++ ST L
Sbjct:   412 -RISVLWLVFQYLMLSVSDMLTLGGMLEFFYREAPSNMKSISTALGWCSTALGFFLSTTL 470

Query:   373 VSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 424
             V + N +T    H  WL G +LN   LE FY L+C+L  LN L+++FWA RY
Sbjct:   471 VEVTNAVTGRLGHQ-WLGGEDLNKTRLELFYVLLCVLNTLNLLNYIFWAKRY 521

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 156/437 (35%), Positives = 241/437 (55%)

Query:     1 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
             + F  LY++ALG GGIK  ++  GA+Q+DE  +  + ++S+FFN++ F ++ GALIA T 
Sbjct:   141 VFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATV 200

Query:    61 VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
             +VWI+ N GW WGFG+ T  +++++  F  GS FYR + P GSPLT IF+V+ AA F   
Sbjct:   201 LVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAA-FRKI 259

Query:   121 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQK--PTEDIKFLNRA--------L 170
               K        V    +   E+ D+  SN+K    S+K   T+++KF ++A        +
Sbjct:   260 SVK--------VPEDKSLLFETADD-ESNIKG---SRKLVHTDNLKFFDKAAVESQSDSI 307

Query:   171 RNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG-S 229
             ++    P   C+              P++ + I+     +Q+ST  V Q  TM+  +G +
Sbjct:   308 KDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKN 367

Query:   230 LKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAV 289
              ++P ASL +F  + +L   PVY+  IIP ARK T+ E G T LQR+G GL++SI AM  
Sbjct:   368 FEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMIT 427

Query:   290 AALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS 349
             A ++E+ R          +  + + ++  W   QYL +G A++FT  G +EFF+  AP +
Sbjct:   428 AGVLEVVRLDYVKTHNAYDQKQ-IHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDA 486

Query:   350 MRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCIL 409
             MR            +G Y STVLV++V  IT       W+   NLN  HL+ F++L+  L
Sbjct:   487 MRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWI-PDNLNRGHLDYFFYLLATL 545

Query:   410 GGLNFLHFLFWAARYKY 426
               LNFL +L+ + RYKY
Sbjct:   546 SFLNFLVYLWISKRYKY 562

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 146/429 (34%), Positives = 232/429 (54%)

Query:     3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV 62
             F  LY++ALG GGIK  ++  GA+Q+D+T +  ++ +S+FFN++ F ++ GA+IA + +V
Sbjct:   143 FIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLV 202

Query:    63 WIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNT-CK 121
             WI+ N GW WG G+ T  + +++  F  GS FYR + P GSPLT + +V+ A+   +  K
Sbjct:   203 WIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVK 262

Query:   122 SKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQC 181
                  + + E   + +    SR   ++ +       K   + +  N+    + ++ +  C
Sbjct:   263 IPEDESLLYENQDAESSIIGSRKLEHTKILTFF--DKAAVETESDNKGAAKSSSWKL--C 318

Query:   182 TXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG-SLKVPPASLPVF 240
             T              PI+ + I+     +Q+ T  V Q  T++  +G + K+P ASL +F
Sbjct:   319 TVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLF 378

Query:   241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 300
               + +L  APVY+ +I+PFARK T  E G T LQRIG GL++SI +M  A ++E+ R   
Sbjct:   379 DTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNY 438

Query:   301 AVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXX 360
                  L N  E +P+T  W   QY  +G A++FT  G +EFF+  AP +MR         
Sbjct:   439 VQTHNLYNE-ETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLT 497

Query:   361 XXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFW 420
                 G Y ST LV++V  +T +     W+   NLN+ HL+ F+WL+  L  LNFL +L+ 
Sbjct:   498 AIAFGNYLSTFLVTLVTKVTRSGGRPGWI-AKNLNNGHLDYFFWLLAGLSFLNFLVYLWI 556

Query:   421 AARYKYSST 429
             A  Y Y  T
Sbjct:   557 AKWYTYKKT 565

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 160/436 (36%), Positives = 232/436 (53%)

Query:     1 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
             + F  LY+VALG G +K ++  HGA+Q+ ++     K+ S++FN   F  S G LIA+T 
Sbjct:   162 IFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIALTL 221

Query:    61 VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
             +VW++ + G   GFG+S A + + I   + G+ ++RNK P  S  T I  V+ AAI    
Sbjct:   222 LVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIAHVIVAAIL--- 278

Query:   121 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRAL-----RNNPA 175
             K K +S       S P   +      N  V        P    +FL++A       N   
Sbjct:   279 KRKLASP------SDPRMLHGDHHVANDVVPSSTLPHTPR--FRFLDKACIKIQDTNTKE 330

Query:   176 YPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG-SLKVPP 234
              P   CT              PIF STI+ N  LAQL TFSVQQ ++MNT+L  S  +PP
Sbjct:   331 SPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSFHIPP 390

Query:   235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVE 294
             ASL   P I ++ L P+Y+  ++PFARK+T    GI  L RIG GL LS  +M  AA++E
Sbjct:   391 ASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLE 450

Query:   295 IKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXX 354
              KR+  +V  G +       ++  W+  Q+L  G +++FT  G++EFF+  +   M    
Sbjct:   451 KKRRDSSVLDGRI-------LSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFL 503

Query:   355 XXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTP-WLFGSNLNHYHLERFYWLMCILGGLN 413
                       G+YFS+VLVS+VN ITST   +  WL  ++LN   L+ FYWL+ +L  LN
Sbjct:   504 MALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLNKDRLDLFYWLLAVLSLLN 563

Query:   414 FLHFLFWAARYKYSST 429
             FL +LFW+ R+   S+
Sbjct:   564 FLSYLFWS-RWNIKSS 578

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
 Identities = 78/246 (31%), Positives = 133/246 (54%)

Query:   181 CTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVF 240
             CT              PI+ S I+ +   +Q+ T  VQQ   M   +G  ++PPA+L +F
Sbjct:   300 CTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIGLFEIPPATLGMF 359

Query:   241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 300
                 +LI  P+Y+ VI+P  R+ T    G T LQR+G GL +S++++  AA+VE  R ++
Sbjct:   360 DTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIVETVRLQL 419

Query:   301 AVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXXXXXXXXX 360
             A +  LV S + +P+   W   QY  +G+A +F   G +EFF+  +P SMR         
Sbjct:   420 ARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCSAWALL 479

Query:   361 XXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFW 420
                +G Y S++++++V  ++       W+   N+N+ HL+ F+WL+  LG +N   F+F+
Sbjct:   480 TTTLGNYLSSLIITLVAYLSGK---DCWIPSDNINNGHLDYFFWLLVSLGSVNIPVFVFF 536

Query:   421 AARYKY 426
             + +Y +
Sbjct:   537 SVKYTH 542

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H157	PTR19_ARATH	No assigned EC number	0.6818	0.9976	0.7350	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00120646 hypothetical protein (481 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	431
pfam00854	372	pfam00854, PTR2, POT family	6e-77
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	6e-16
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	5e-15
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	0.003

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  243 bits (622), Expect = 6e-77
 Identities = 108/363 (29%), Positives = 174/363 (47%), Gaps = 27/363 (7%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
           + + GLY++ALG GGIK +++  GA+Q+DET      +R  FF+++ F ++ G+LIA   
Sbjct: 34  LFYIGLYLIALGTGGIKPNVSAFGADQFDET---QDPRRDGFFSWFYFSINAGSLIATII 90

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIP-TGSPLTTIFKVLTAAIFNT 119
             +++ N G+  GFG+    +LL++ +FLLGS  Y+ K P  GSP T     +  A    
Sbjct: 91  TPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKN 150

Query: 120 CKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIV 179
            K +   ++     +    +  S    +        +       KF              
Sbjct: 151 RKLQLPKDSHWLYWALEKYNKRS---ISQTKVHTRVAVIFIPLPKFWALF---------- 197

Query: 180 QCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSL-KVPPASLP 238
                 V  ++ ++ + PI+   I+ +    QL+T  V+Q  TM+  +  L ++PPAS  
Sbjct: 198 -DQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQ 256

Query: 239 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRK 298
            F  + +LIL P+ + ++ P  R     + G+T  QR G G+ + IVA  +AA+VE KR 
Sbjct: 257 SFNPLAVLILLPILDFLVYPLLRL----KRGLTLPQRFGLGMFILIVANFLAAIVEAKRP 312

Query: 299 RVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS 358
           R A   GL +    +P+  LW   +    G      LAG +EF     P SM SL T LS
Sbjct: 313 RYAAALGLTSPGWTVPLFILWSLPELFISGVG----LAGALEFAPDALPSSMMSLWTLLS 368

Query: 359 WAS 361
            A+
Sbjct: 369 AAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 79.8 bits (197), Expect = 6e-16
 Identities = 65/301 (21%), Positives = 124/301 (41%), Gaps = 54/301 (17%)

Query: 3   FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF-- 60
             GL ++ALG GGIK  ++  G +Q++E        R  FF+++ F ++ G+L +     
Sbjct: 89  LVGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRFRFFSFFYFAINAGSLFSTIITP 145

Query: 61  -----VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAA 115
                V        +   FG+    + L++ +F +GS  Y+ K P G+    + KV+   
Sbjct: 146 ILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGN---IVSKVMKCI 202

Query: 116 IFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPA 175
           +F   K                                   +  +ED   L+      P 
Sbjct: 203 VFALKKR---------------------------------FRTRSEDWPRLHWLDWAAPK 229

Query: 176 YPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPA 235
           Y I     + +   K ++++  +F+   M      Q  +    QA  M+  +G   + P 
Sbjct: 230 YLI-----RMIRSTKRLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVGLFPIQPD 284

Query: 236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEI 295
            +     + +LIL P++++V+      + K     T L+++  G++L+ +A AVAAL++ 
Sbjct: 285 QMQAVNPLLVLILVPIFDYVV---YPALAKCGTRFTSLRKMAVGMLLAALAFAVAALLQN 341

Query: 296 K 296
           K
Sbjct: 342 K 342

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 76.6 bits (189), Expect = 5e-15
 Identities = 69/380 (18%), Positives = 134/380 (35%), Gaps = 71/380 (18%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
            L+ GL ++ +G G  K +++    E Y +       +R   F  +   ++ G+LIA   
Sbjct: 119 GLYIGLALIIVGTGLFKPNISSLLGELYPK----DDPRRDGGFTLFYMGINIGSLIAPII 174

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFY--------------RNKIPTGSPLT 106
              +  N GW  GFG++   +++ + IFLLG                     +P      
Sbjct: 175 TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVL--GG 232

Query: 107 TIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFL 166
            +  +L A +         S  +                        V S      I + 
Sbjct: 233 LVVMILAALLTLLLNQNTFSGVLL-----------------------VISILIA--IIYF 267

Query: 167 NRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLST-FSVQQAATMNT 225
             A R+           K  +E + ++   P+F+  ++      Q+ +  ++     +N 
Sbjct: 268 AEAFRSP----------KVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR 317

Query: 226 KLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIV 285
           ++   +VPPA        FI++ +P+   +     R   +    I        GLIL+ +
Sbjct: 318 QIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIK----FALGLILAGL 373

Query: 286 AMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTD 345
              +  L  I        SGLV        +  W+ L Y+     +LF     +      
Sbjct: 374 GFLILLLAGIWF---GGPSGLV--------SVWWLVLSYVLQSFGELFISPVGLSMVTKL 422

Query: 346 APLSMRSLATSLSWASLAMG 365
           AP +++S   ++ + ++A G
Sbjct: 423 APPALKSFIMAMWFLTVAAG 442

Length = 498

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 3/113 (2%)

Query: 2   LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV 61
           +F GL  +A+G G  K + +    + Y+   +    +R   F  +   ++ G+ I+    
Sbjct: 105 IFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLLA 161

Query: 62  VWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTA 114
             I +N G+  GF ++   +++ +  F  G    R+      PL+   K    
Sbjct: 162 GVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGK 214

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	431
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.46
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.42
TIGR00893	399	2A0114 d-galactonate transporter.	99.4
PRK03545	390	putative arabinose transporter; Provisional	99.39
PRK09874	408	drug efflux system protein MdtG; Provisional	99.39
PRK10489	417	enterobactin exporter EntS; Provisional	99.39
TIGR00900	365	2A0121 H+ Antiporter protein.	99.37
PRK05122	399	major facilitator superfamily transporter; Provisi	99.36
PRK10054	395	putative transporter; Provisional	99.35
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.33
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.32
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.32
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.31
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.3
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.3
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.29
PRK12382	392	putative transporter; Provisional	99.26
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.22
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.19
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.19
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.19
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.17
TIGR00901	356	2A0125 AmpG-related permease.	99.17
PRK15011	393	sugar efflux transporter B; Provisional	99.16
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.15
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.15
PRK11010	491	ampG muropeptide transporter; Validated	99.14
PRK11663	434	regulatory protein UhpC; Provisional	99.13
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.13
TIGR00895	398	2A0115 benzoate transport.	99.13
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.12
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.12
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.11
PRK10504	471	putative transporter; Provisional	99.11
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.1
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.1
PRK09528	420	lacY galactoside permease; Reviewed	99.09
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.09
PRK12307	426	putative sialic acid transporter; Provisional	99.07
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.07
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.07
KOG2532	466	consensus Permease of the major facilitator superf	99.06
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.04
PRK10091	382	MFS transport protein AraJ; Provisional	99.03
PRK09952	438	shikimate transporter; Provisional	99.03
PRK09705	393	cynX putative cyanate transporter; Provisional	99.01
TIGR00891	405	2A0112 putative sialic acid transporter.	99.01
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.01
PRK03633	381	putative MFS family transporter protein; Provision	99.01
TIGR00898	505	2A0119 cation transport protein.	99.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.0
PF13347	428	MFS_2: MFS/sugar transport protein	98.99
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.99
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.99
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.98
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.98
PRK03699	394	putative transporter; Provisional	98.96
PRK11043	401	putative transporter; Provisional	98.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.95
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.94
PRK10642	490	proline/glycine betaine transporter; Provisional	98.94
PRK11902	402	ampG muropeptide transporter; Reviewed	98.92
PRK03893	496	putative sialic acid transporter; Provisional	98.91
PRK15075	434	citrate-proton symporter; Provisional	98.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.9
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.89
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.87
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.87
PRK09848	448	glucuronide transporter; Provisional	98.86
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.84
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.84
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.81
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.78
PRK09669	444	putative symporter YagG; Provisional	98.72
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.7
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.68
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.67
PLN00028	476	nitrate transmembrane transporter; Provisional	98.67
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.66
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.65
PRK10429	473	melibiose:sodium symporter; Provisional	98.57
PRK10133	438	L-fucose transporter; Provisional	98.45
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.38
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.37
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.35
PRK03545	390	putative arabinose transporter; Provisional	98.31
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.3
PRK11462	460	putative transporter; Provisional	98.27
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.25
TIGR00805	633	oat sodium-independent organic anion transporter.	98.23
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.17
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.17
KOG2533	495	consensus Permease of the major facilitator superf	98.16
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.13
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.13
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.12
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.09
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.08
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.07
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.07
PRK10091	382	MFS transport protein AraJ; Provisional	98.06
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.06
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.05
PRK10054	395	putative transporter; Provisional	98.04
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.03
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.03
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.03
TIGR00893	399	2A0114 d-galactonate transporter.	97.99
TIGR00900	365	2A0121 H+ Antiporter protein.	97.99
PRK11663	434	regulatory protein UhpC; Provisional	97.97
TIGR00891	405	2A0112 putative sialic acid transporter.	97.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.93
PRK09874	408	drug efflux system protein MdtG; Provisional	97.9
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.89
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.88
TIGR00895	398	2A0115 benzoate transport.	97.87
PRK09705	393	cynX putative cyanate transporter; Provisional	97.85
PRK10504	471	putative transporter; Provisional	97.84
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.83
COG2211	467	MelB Na+/melibiose symporter and related transport	97.82
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.82
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.8
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.8
PRK03633	381	putative MFS family transporter protein; Provision	97.78
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.77
PRK12382	392	putative transporter; Provisional	97.75
KOG0569	485	consensus Permease of the major facilitator superf	97.75
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.72
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.71
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.7
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.67
PRK03699	394	putative transporter; Provisional	97.65
TIGR00805	633	oat sodium-independent organic anion transporter.	97.65
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.62
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.62
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.61
PRK12307	426	putative sialic acid transporter; Provisional	97.6
PRK05122	399	major facilitator superfamily transporter; Provisi	97.6
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.57
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.56
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.55
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.54
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.53
TIGR00898	505	2A0119 cation transport protein.	97.5
PRK03893	496	putative sialic acid transporter; Provisional	97.47
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.46
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.45
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.45
PRK11043	401	putative transporter; Provisional	97.44
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.44
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.41
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.41
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.4
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.4
TIGR00901	356	2A0125 AmpG-related permease.	97.38
PRK10489	417	enterobactin exporter EntS; Provisional	97.38
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.36
PTZ00207	591	hypothetical protein; Provisional	97.34
PRK11010	491	ampG muropeptide transporter; Validated	97.34
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.32
KOG3762	618	consensus Predicted transporter [General function	97.3
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.3
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.25
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.24
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.22
KOG2533	495	consensus Permease of the major facilitator superf	97.18
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.18
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.17
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.16
KOG2615	451	consensus Permease of the major facilitator superf	97.14
PRK11902	402	ampG muropeptide transporter; Reviewed	97.05
PRK10642	490	proline/glycine betaine transporter; Provisional	97.05
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.01
PLN00028	476	nitrate transmembrane transporter; Provisional	96.99
KOG0254	513	consensus Predicted transporter (major facilitator	96.98
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	96.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.96
PRK10133	438	L-fucose transporter; Provisional	96.94
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.93
PRK10406	432	alpha-ketoglutarate transporter; Provisional	96.88
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.81
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.77
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.7
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.66
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	96.59
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.58
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.53
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.5
PRK15075	434	citrate-proton symporter; Provisional	96.45
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.39
PRK09952	438	shikimate transporter; Provisional	96.38
KOG2532	466	consensus Permease of the major facilitator superf	96.32
KOG3626	735	consensus Organic anion transporter [Secondary met	96.25
PRK15011	393	sugar efflux transporter B; Provisional	96.13
KOG3626	735	consensus Organic anion transporter [Secondary met	96.02
KOG0254	513	consensus Predicted transporter (major facilitator	96.01
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	95.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	95.78
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	95.73
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.72
KOG2563	480	consensus Permease of the major facilitator superf	95.72
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	95.7
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.54
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.51
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.46
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.33
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	94.77
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.67
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	94.56
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.47
KOG2615	451	consensus Permease of the major facilitator superf	94.41
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	94.34
KOG0569	485	consensus Permease of the major facilitator superf	94.21
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	94.12
PRK09528	420	lacY galactoside permease; Reviewed	94.11
PRK09669	444	putative symporter YagG; Provisional	94.08
PRK11462	460	putative transporter; Provisional	94.04
PTZ00207	591	hypothetical protein; Provisional	94.0
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	93.25
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	93.25
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	93.19
PF13347	428	MFS_2: MFS/sugar transport protein	92.98
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	92.55
PRK10429	473	melibiose:sodium symporter; Provisional	92.24
KOG2325	488	consensus Predicted transporter/transmembrane prot	91.81
KOG2816	463	consensus Predicted transporter ADD1 (major facili	91.49
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	90.37
COG2211	467	MelB Na+/melibiose symporter and related transport	89.28
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	88.66
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	88.26
PRK09848	448	glucuronide transporter; Provisional	88.05
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	87.67
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	87.41
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	87.12
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	86.91
KOG0637	498	consensus Sucrose transporter and related proteins	86.12
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	84.39
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	82.91
TIGR00788	468	fbt folate/biopterin transporter. The only functio	82.33

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=6.4e-66  Score=529.89  Aligned_cols=409  Identities=44%  Similarity=0.722  Sum_probs=366.9

Q ss_pred             ChhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHH
Q 014067            1 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTAT   80 (431)
Q Consensus         1 ~~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~   80 (431)
                      +||.+|.++++|+|+.|||+.++++||+++.+++++.++.++|+|+|+.+|+|.+++.++..|++++.||.++|.+++++
T Consensus       154 ~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~  233 (571)
T KOG1237|consen  154 VLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVL  233 (571)
T ss_pred             HHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHH
Confidence            47899999999999999999999999999999989888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCC--CCCcc--cccCCCCCCCCCCCcc-cccccccCCCC
Q 014067           81 ILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSK--NSSNA--VTEVHSSPTCSNESRD-EGNSNVKEKVP  155 (431)
Q Consensus        81 ~~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~--~~~~~--~~~~~~~l~~~~~~~~-~~a~~~~~~~~  155 (431)
                      |++++++|+.|.+.|++++|.++|++.+.+|++.+.++++...  +++++  ...+.....+++.+++ |++++..+.+.
T Consensus       234 ~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~  313 (571)
T KOG1237|consen  234 NALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL  313 (571)
T ss_pred             HHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchhccccccccccccCCcccchhhHhhccCCccc
Confidence            9999999999999999999999999999999999999987654  21111  1111122334556677 88877543220


Q ss_pred             CCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCC-cccCC
Q 014067          156 SQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS-LKVPP  234 (431)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg-~~ip~  234 (431)
                                    .++...++|+.|++++|||+|.++|++|+|...++||+++.|+.|.++.|+.+||+++++ +++|+
T Consensus       314 --------------~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~  379 (571)
T KOG1237|consen  314 --------------KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPA  379 (571)
T ss_pred             --------------ccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCc
Confidence                          122234789999999999999999999999999999999999999999999999999987 99999


Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++++.+..+.++++.|+++++.+|+.||.+++|++.++++|+++|+++..++|..++.+|.+|++.+.+    +....++
T Consensus       380 asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~----~~~~~~~  455 (571)
T KOG1237|consen  380 ASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVS----LLVETNP  455 (571)
T ss_pred             hhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhh----ccCCCCC
Confidence            999999999999999999999999999999887789999999999999999999999999999988765    1122368


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcC-CC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG-SN  393 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~-~~  393 (431)
                      +|++||+|||+++|+||+|.+++++||+|+|||++||++.+++|+++.++|++++..+++++...|++  ..+|+ + +|
T Consensus       456 mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~-~~~~  532 (571)
T KOG1237|consen  456 MSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWL-GFAN  532 (571)
T ss_pred             eeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccC-ChhH
Confidence            99999999999999999999999999999999999999999999999999999999999999988753  35799 8 99


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 014067          394 LNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG  430 (431)
Q Consensus       394 ~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~~~~~  430 (431)
                      +|++|+|+|||+++.++.++.+.|.+++++|++|..+
T Consensus       533 ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  533 LNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK  569 (571)
T ss_pred             hhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence            9999999999999999999999999999999998765

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-52  Score=411.47  Aligned_cols=361  Identities=19%  Similarity=0.305  Sum_probs=281.1

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +|++|++|++|+|++|||++++++|||+++||    |||.+|++||+++|+|++++|++++++++++||+.+|.+++++|
T Consensus       120 l~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm  195 (498)
T COG3104         120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGM  195 (498)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence            78999999999999999999999999999998    68999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcceeecC--CCCCchhH------HHHHHHHHHHh--hcCCCCCCcccccCCCCCCCCCCCcc--ccccc
Q 014067           82 LLSIPIFLLGSPFYRNKI--PTGSPLTT------IFKVLTAAIFN--TCKSKNSSNAVTEVHSSPTCSNESRD--EGNSN  149 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~--p~~~~~~~------~~~v~~~a~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~--~~a~~  149 (431)
                      .+++++|++++|++.+.+  |+.+|...      ...++.....-  ....               ..+..+.  ....+
T Consensus       196 ~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~~~~i  260 (498)
T COG3104         196 IIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLL---------------NQNTFSGVLLVISI  260 (498)
T ss_pred             HHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHH
Confidence            999999999999987643  33333321      00111100000  0000               0000000  00000


Q ss_pred             ccCCCCCCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHH-HHhccCCC
Q 014067          150 VKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATMNTKLG  228 (431)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~-~~~~~~~g  228 (431)
                      ..          ...+.-+.      ..+   +..+ +|+||+++++++++..++||++|+|++|++..++ +++|++..
T Consensus       261 ~~----------~~~~~~~~------~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~  320 (498)
T COG3104         261 LI----------AIIYFAEA------FRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF  320 (498)
T ss_pred             HH----------HHHHHHHH------hcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc
Confidence            00          00000000      001   1233 7899999999999999999999999999998776 78888856


Q ss_pred             CcccCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 014067          229 SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN  308 (431)
Q Consensus       229 g~~ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~  308 (431)
                      |+++|++|+|++||+++++++|+++++|+|+.++. +   +++++.|+++|+++++++++++.......   +.      
T Consensus       321 g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~---~ps~~~KFalGl~l~g~~fl~l~~~~~~~---~~------  387 (498)
T COG3104         321 GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-K---QPSTPIKFALGLILAGLGFLILLLAGIWF---GG------  387 (498)
T ss_pred             ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-C---CCCcchHHHHHHHHHHHHHHHHHHHHHhh---cC------
Confidence            79999999999999999999999999999988764 2   38999999999999999999988875321   11      


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCC
Q 014067          309 SSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPW  388 (431)
Q Consensus       309 ~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w  388 (431)
                        +...+|++|++++|+++++||+|++|+++|+++++||++++|.+||+|+++.+.|+.+++.+.+.... +        
T Consensus       388 --~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~--------  456 (498)
T COG3104         388 --PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T--------  456 (498)
T ss_pred             --CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c--------
Confidence              12469999999999999999999999999999999999999999999999999999999988774321 1        


Q ss_pred             CcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 014067          389 LFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS  427 (431)
Q Consensus       389 ~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~~  427 (431)
                        -+-.+..+...+|+.++.+.++..++....+++.++-
T Consensus       457 --~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~  493 (498)
T COG3104         457 --DPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRM  493 (498)
T ss_pred             --chhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence              0111223345679999999999999988888887654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=4.5e-43  Score=355.86  Aligned_cols=363  Identities=13%  Similarity=0.116  Sum_probs=265.9

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++++.++++|.|.++||.+++++|+|+++|+    +|+++|+++|+++|+|++++|++++++.+++||+.+|.+++++|
T Consensus       103 ~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm  178 (493)
T PRK15462        103 LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM  178 (493)
T ss_pred             HHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence            35677788899999999999999999988765    57889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcceeecCC-CCCchhH--HHHHHH-----H-----HHHhhcCCCCCCcccccCCCCCCCCCCCcc--cc
Q 014067           82 LLSIPIFLLGSPFYRNKIP-TGSPLTT--IFKVLT-----A-----AIFNTCKSKNSSNAVTEVHSSPTCSNESRD--EG  146 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p-~~~~~~~--~~~v~~-----~-----a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~  146 (431)
                      ++++++++.++|++.+..+ +.+|.++  ......     .     .......               . ......  -.
T Consensus       179 ~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~  242 (493)
T PRK15462        179 IAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLF---------------W-KEWSVYALIV  242 (493)
T ss_pred             HHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH---------------H-HHHHHHHHHH
Confidence            9999999998887754211 1122211  000000     0     0000000               0 000000  00


Q ss_pred             cccccCCCCCCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHH-HHhcc
Q 014067          147 NSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATMNT  225 (431)
Q Consensus       147 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~-~~~~~  225 (431)
                      ..+. .         --++..         ... .+ ...+|+||+..++++++..++||+.|+|.++++.+.+ +++|+
T Consensus       243 ~~~~-~---------~~~~~~---------~~~-~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~  301 (493)
T PRK15462        243 ATII-G---------LGVLAK---------IYR-KA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNR  301 (493)
T ss_pred             HHHH-H---------HHHHHH---------HHH-hc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccc
Confidence            0000 0         000000         000 01 1236799999999999999999999999999996655 89999


Q ss_pred             CCCCcccCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 014067          226 KLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSG  305 (431)
Q Consensus       226 ~~gg~~ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g  305 (431)
                      +++|+++|++|+|++||++++++.|++.++|.++.+|. +   +++.++|+++|+++.++|++++.+....    +..  
T Consensus       302 ~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~-~---~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~--  371 (493)
T PRK15462        302 DMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGN-R---TVRIWGKFALGLGLMSAGFCILTLSARW----SAM--  371 (493)
T ss_pred             hhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC-C---CCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC--
Confidence            99999999999999999999999999999998886542 2   3899999999999999999999887521    111  


Q ss_pred             CCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHH-HHHHHHhhhhhhhhccccccCC
Q 014067          306 LVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASL-AMGYYFSTVLVSIVNNITSTYR  384 (431)
Q Consensus       306 ~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~-~iG~~l~~~l~~~~~~~~~~~~  384 (431)
                            ...+|++|++..|+++|+||++++|.++++++++||++++|++||+|++.. ++|+.+++.+.+.....+.   
T Consensus       372 ------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~---  442 (493)
T PRK15462        372 ------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF---  442 (493)
T ss_pred             ------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---
Confidence                  125899999999999999999999999999999999999999999999955 8999999999888742110   


Q ss_pred             CCCCCcCCC---CCcchhhHHHHHHHHHHHHH--HHHHHHHhhccccccC
Q 014067          385 HTPWLFGSN---LNHYHLERFYWLMCILGGLN--FLHFLFWAARYKYSST  429 (431)
Q Consensus       385 ~~~w~~~~~---~n~~~l~~~f~~la~l~~v~--~i~~~~~~~~~~~~~~  429 (431)
                       +    ++.   -...++..+|..++.++++.  .+++..+-+..|+|.|
T Consensus       443 -~----~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (493)
T PRK15462        443 -D----ASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNR  487 (493)
T ss_pred             -C----ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             0    100   01124556788888766655  4444555555565554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=3.2e-42  Score=360.59  Aligned_cols=356  Identities=22%  Similarity=0.442  Sum_probs=290.7

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc-------CchhHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-------GWQWGF   74 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~-------g~~~~F   74 (431)
                      ++++|+++++|+|++|||++++++|||+++++   ++++++|+|||+++|+|+++++++++++++++       ||+++|
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF  164 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAF  164 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHH
Confidence            57899999999999999999999999986543   36899999999999999999999999998553       699999


Q ss_pred             HHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcc-cccccccCC
Q 014067           75 GISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD-EGNSNVKEK  153 (431)
Q Consensus        75 ~i~~i~~~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~  153 (431)
                      ++++++|++++++|..++|+|++.+|.++++.++.++++.+++++....+            .+ ...+| |.+...   
T Consensus       165 ~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~------------~~-~~~~~ld~a~~~---  228 (654)
T TIGR00926       165 GVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRS------------EH-WPLHWLDYAKDK---  228 (654)
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCC------------cc-cchhHHHHhccc---
Confidence            99999999999999999999988888888888888888888776532210            00 00122 222110   


Q ss_pred             CCCCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccC
Q 014067          154 VPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVP  233 (431)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip  233 (431)
                                                 ...+++||+|++++++++++..++||+.++|+.|++..|+++||++++++++|
T Consensus       229 ---------------------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip  281 (654)
T TIGR00926       229 ---------------------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQ  281 (654)
T ss_pred             ---------------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecC
Confidence                                       12456899999999999999999999999999999999999999998899999


Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhh------------
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA------------  301 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~------------  301 (431)
                      +++++++|++.++++.|+++..++|.++|++.+   +++++|+++|++++++++++++++|.+++...            
T Consensus       282 ~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~  358 (654)
T TIGR00926       282 PDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQ  358 (654)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEE
Confidence            999999999999999999998888988876443   79999999999999999999999996442110            


Q ss_pred             -------------------------------------------h--------------------------h----c-C--
Q 014067          302 -------------------------------------------V--------------------------N----S-G--  305 (431)
Q Consensus       302 -------------------------------------------~--------------------------~----~-g--  305 (431)
                                                                 .                          +    . +  
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (654)
T TIGR00926       359 VLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKIS  438 (654)
T ss_pred             EecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCce
Confidence                                                       0                          0    0 0  


Q ss_pred             ---------C----------------------------------------------------------------------
Q 014067          306 ---------L----------------------------------------------------------------------  306 (431)
Q Consensus       306 ---------~----------------------------------------------------------------------  306 (431)
                               .                                                                      
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (654)
T TIGR00926       439 YVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRI  518 (654)
T ss_pred             EEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccc
Confidence                     0                                                                      


Q ss_pred             ----------------------C-CCC--C-----------CcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchh
Q 014067          307 ----------------------V-NSS--E-----------PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM  350 (431)
Q Consensus       307 ----------------------~-~~~--~-----------~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~  350 (431)
                                            + ++.  +           ..++|++||+|||++.++||++.+++++|+.+++||++|
T Consensus       519 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~m  598 (654)
T TIGR00926       519 DNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNM  598 (654)
T ss_pred             cccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHH
Confidence                                  0 000  0           123889999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 014067          351 RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY  424 (431)
Q Consensus       351 ~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~  424 (431)
                      |+..+++|.++.++|+.+...+...-. ..     .+|            .-|.+.+.++++..++|.++++.|
T Consensus       599 ks~~~a~~~~~~~~g~~~~~~~~~~~~-~~-----~~~------------~~~~~~~~~~~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       599 KSVLQALWLLTVAIGNLIVVVIAEFEN-FS-----VQA------------AEFFLFASLMLVVMAIFSILAYFY  654 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-Ch-----HHH------------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999877654321 10     122            247778889999999999998765

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=100.00  E-value=2.9e-43  Score=350.28  Aligned_cols=328  Identities=32%  Similarity=0.510  Sum_probs=232.3

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +|+||+++++|+|++|||++++++|||+++++   ++++++|+||||++|+|+++++++++++++++||+++|++++++|
T Consensus        36 ~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~  112 (372)
T PF00854_consen   36 FYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGM  112 (372)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHH
Confidence            79999999999999999999999999998742   378999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcceeec-CCCCCchhH-HHHHHHHHHHhhcCCCCCCc---ccccCCCCCCCCCCCcc-cccccccCCCC
Q 014067           82 LLSIPIFLLGSPFYRNK-IPTGSPLTT-IFKVLTAAIFNTCKSKNSSN---AVTEVHSSPTCSNESRD-EGNSNVKEKVP  155 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~-~p~~~~~~~-~~~v~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~a~~~~~~~~  155 (431)
                      ++++++|+.++++|++. +|.+++..+ ...++..+.+++........   ................. .++....... 
T Consensus       113 ~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  191 (372)
T PF00854_consen  113 LLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGSSWLDWALFQYSERSIFGIIVFIRAAVIFFPE-  191 (372)
T ss_dssp             HHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC-
T ss_pred             HHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccchHHHHHhhhhhhhhhhhhhhhhccchhhhhhh-
Confidence            99999999999999887 677888777 44555555555543220000   00000000000000000 0000000000 


Q ss_pred             CCCCchhHHHHhhhccCCCCCCcc-ccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCC-cccC
Q 014067          156 SQKPTEDIKFLNRALRNNPAYPIV-QCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS-LKVP  233 (431)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg-~~ip  233 (431)
                                         ...|. .++++++|+.|.+.+.++.+...++|+.++.|..+....|.+++|+.+++ +++|
T Consensus       192 -------------------~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip  252 (372)
T PF00854_consen  192 -------------------IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIP  252 (372)
T ss_dssp             -------------------HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------
T ss_pred             -------------------hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccc
Confidence                               00011 13566788889999999999999999999999887778888899888888 9999


Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      +++++++|+++++++.|+++++++|+.|+ +++   +++++|+++|++++.+++++++.+|.+|...+.+.|        
T Consensus       253 ~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~--------  320 (372)
T PF00854_consen  253 PAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---PSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG--------  320 (372)
T ss_dssp             SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T--------
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---chhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC--------
Confidence            99999999999999999999999999984 222   899999999999999999999999988776655444        


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHH
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAM  364 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~i  364 (431)
                      ..+.+|+++.|++++++|+++++++.+.+++.+|+++++.++|+|+...+.
T Consensus       321 ~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~  371 (372)
T PF00854_consen  321 KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF  371 (372)
T ss_dssp             T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred             CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence            466699999999999999999999999888889988888888888887653

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=3.2e-38  Score=323.96  Aligned_cols=365  Identities=13%  Similarity=0.174  Sum_probs=269.8

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++++++++|+|+++||.+++++|+|+++++    ||++.|+++|+++|+|+++||.++|++.+++||+++|.++++++
T Consensus       108 l~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~  183 (489)
T PRK10207        108 IFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGL  183 (489)
T ss_pred             HHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence            45788999999999999999999999987653    56789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcceeec--CCCCCchh--HHHHHH------HHHHHhhcCCCCCCcccccCCCCCCCCCCCcc--ccccc
Q 014067           82 LLSIPIFLLGSPFYRNK--IPTGSPLT--TIFKVL------TAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD--EGNSN  149 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~--~p~~~~~~--~~~~v~------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~a~~  149 (431)
                      .++++.+..+++++++.  +|++++..  ......      ........ .               +......  ....+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~  247 (489)
T PRK10207        184 IIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLM-H---------------NVEVANLVLIVLSI  247 (489)
T ss_pred             HHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHH-h---------------hhhHHHHHHHHHHH
Confidence            99998888888777553  23333321  111000      00000000 0               0000000  00000


Q ss_pred             ccCCCCCCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHH-HhccCCC
Q 014067          150 VKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMNTKLG  228 (431)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~-~~~~~~g  228 (431)
                      .          ....+..+           ..+.++ .++++.+..+++++..++||.+++|..+.++++.+ ++|++..
T Consensus       248 i----------~~~~f~~~-----------~~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~  305 (489)
T PRK10207        248 V----------VTIIFFRE-----------AFKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL  305 (489)
T ss_pred             H----------HHHHHHHH-----------HhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc
Confidence            0          00011110           001122 44677777888888999999999999988877775 6888877


Q ss_pred             CcccCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 014067          229 SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN  308 (431)
Q Consensus       229 g~~ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~  308 (431)
                      |+.+|++++|++|++.++++.|+.++++.++.+|. .   ++++++|+++|+++.++++++++..+...   +..     
T Consensus       306 G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~-~---~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~-----  373 (489)
T PRK10207        306 GFSINPVSFQALNPFWVVVASPILAGIYTHLGSKG-K---DLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA-----  373 (489)
T ss_pred             ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCC-C---CCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC-----
Confidence            99999999999999999999999999887775542 2   38999999999999999998876654211   100     


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCC
Q 014067          309 SSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPW  388 (431)
Q Consensus       309 ~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w  388 (431)
                         ...+|+||+++.|++.|+||.+.+|++++++++.+|++++|.+||+|++..++|+.+|+.+++.+.....     ..
T Consensus       374 ---~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~-----~~  445 (489)
T PRK10207        374 ---QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN-----IT  445 (489)
T ss_pred             ---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cc
Confidence               1247899999999999999999999999999999999999999999999999999999999887742110     00


Q ss_pred             CcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 014067          389 LFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG  430 (431)
Q Consensus       389 ~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~~~~~  430 (431)
                      . |.+ .++.+..+|..+++.+++..++++++.|++++.-.+
T Consensus       446 ~-~~~-~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~  485 (489)
T PRK10207        446 D-PLE-TLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINT  485 (489)
T ss_pred             c-chh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            0 100 123467889999999999999999999888775443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=5.7e-38  Score=321.67  Aligned_cols=352  Identities=16%  Similarity=0.191  Sum_probs=264.6

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++++.++++|.|+++|+.+++++|+++++++   .+|+++|+++|++.|+|+++||++++++.+++||+++|.++++++
T Consensus       105 ~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~  181 (475)
T TIGR00924       105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGM  181 (475)
T ss_pred             HHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            45678889999999999999999999987653   247789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcceeecCCCCCchhHH-----HH--HH----HHHHHhhcCCCCCCcccccCCCCCCCCCCCcc-----c
Q 014067           82 LLSIPIFLLGSPFYRNKIPTGSPLTTI-----FK--VL----TAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD-----E  145 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p~~~~~~~~-----~~--v~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~  145 (431)
                      +++++++++.++.+++.++++++.+..     .+  .+    ....+......              +....+.     .
T Consensus       182 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~  247 (475)
T TIGR00924       182 VIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMH--------------HVVIANILLMTVT  247 (475)
T ss_pred             HHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHH
Confidence            999888888888876544333332110     00  00    00000000000              0000000     0


Q ss_pred             ccccccCCCCCCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHH-HHHHHhc
Q 014067          146 GNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSV-QQAATMN  224 (431)
Q Consensus       146 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~-~~~~~~~  224 (431)
                      .+...             ++.+.. .    .+    +.++ +++++..+++++++..++||++|+|+.+++. ++++++|
T Consensus       248 ~~~~~-------------~~~~~~-~----~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~  304 (475)
T TIGR00924       248 LAVII-------------FFFRLA-F----KP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMH  304 (475)
T ss_pred             HHHHH-------------HHHHHH-H----hc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            00000             000000 0    00    1122 3455667789999999999999999999885 4567899


Q ss_pred             cCCCCcccCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 014067          225 TKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNS  304 (431)
Q Consensus       225 ~~~gg~~ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~  304 (431)
                      ++++++++|+++++++|++.+++++|+++++|.++.|| +++   ++...|+++|+++.+++++.++++..    .+++ 
T Consensus       305 ~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~-~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~-  375 (475)
T TIGR00924       305 HEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK-GKD---PTTPLKFTLGMLFCGASFLTFAASIW----FADA-  375 (475)
T ss_pred             ccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CCC---CCcHHHHHHHHHHHHHHHHHHHHHHh----hcCC-
Confidence            99889999999999999999999999999988777665 222   78889999999999999999887631    1111 


Q ss_pred             CCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCC
Q 014067          305 GLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYR  384 (431)
Q Consensus       305 g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~  384 (431)
                             ..++|+||++++|+++|+||++++|++++++++++|+++||+++|+|.+..++|+.+++.+.+......    
T Consensus       376 -------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~----  444 (475)
T TIGR00924       376 -------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ----  444 (475)
T ss_pred             -------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence                   136899999999999999999999999999999999999999999999999999999999987653211    


Q ss_pred             CCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014067          385 HTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY  426 (431)
Q Consensus       385 ~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~  426 (431)
                        +|           ..+|..+++++++.+++++++.|+.++
T Consensus       445 --~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~k  473 (475)
T TIGR00924       445 --GV-----------TGVFGKIGLVTLLVGVVMALMVPWLNR  473 (475)
T ss_pred             --ch-----------hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              12           357888888888888888888887764

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=7.8e-37  Score=315.04  Aligned_cols=360  Identities=13%  Similarity=0.212  Sum_probs=263.2

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++++.++++|.|+++|+.+++++++|+++++    +++++++++|+++|+|+++||++++++.+++||+++|.++++.+
T Consensus       115 l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~  190 (500)
T PRK09584        115 VYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGM  190 (500)
T ss_pred             HHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence            45678889999999999999999999986643    46678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcceeec--CCCCCchhH--HH----HHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCC
Q 014067           82 LLSIPIFLLGSPFYRNK--IPTGSPLTT--IF----KVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEK  153 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~--~p~~~~~~~--~~----~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~  153 (431)
                      +++++.+++.++.+++.  +|+++|...  ..    .+...........              .+.+.  .+......  
T Consensus       191 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~--~~~~~~~~--  252 (500)
T PRK09584        191 LITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLL--------------HNQEI--ARMALGVV--  252 (500)
T ss_pred             HHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHH--------------hcchH--HHHHHHHH--
Confidence            99988887777666543  233333211  00    0000000000000              00000  00000000  


Q ss_pred             CCCCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHH-HHhccCCCCccc
Q 014067          154 VPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATMNTKLGSLKV  232 (431)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~-~~~~~~~gg~~i  232 (431)
                            +.. ......        ...+..++ +|+++.+..+++++..++||+++.|+++.+..|+ +++|++++|+.+
T Consensus       253 ------~~~-~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i  316 (500)
T PRK09584        253 ------ALG-IVVIFG--------KEAFAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAV  316 (500)
T ss_pred             ------HHH-HHHHHH--------HHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEE
Confidence                  000 000000        00011222 4567777888888999999999999999988876 567888888999


Q ss_pred             CCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 014067          233 PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP  312 (431)
Q Consensus       233 p~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~  312 (431)
                      |++++|++|++.+++++|+.++++.++.+|       +++.+|+++|+++.+++++.+++...    .+++        .
T Consensus       317 ~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~----~~~~--------~  377 (500)
T PRK09584        317 EPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAK----FAND--------A  377 (500)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHH----hcCC--------C
Confidence            999999999999999999999988776544       57889999999999999999887652    1111        1


Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCC
Q 014067          313 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS  392 (431)
Q Consensus       313 ~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~  392 (431)
                      ..+|++|++++|+++|+||++++|.+++++++++|+++||++||+|+++.++|+.+++.+.+.+..-..       . .|
T Consensus       378 ~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~-------~-~~  449 (500)
T PRK09584        378 GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN-------V-TD  449 (500)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------c-cc
Confidence            368999999999999999999999999999999999999999999999999999999999876541000       0 11


Q ss_pred             CC-CcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014067          393 NL-NHYHLERFYWLMCILGGLNFLHFLFWAARYKY  426 (431)
Q Consensus       393 ~~-n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~  426 (431)
                      .. ..+.+..+|..+++++++.+++++++.++.++
T Consensus       450 ~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k  484 (500)
T PRK09584        450 PLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR  484 (500)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 11235678888998888888888888887765

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.46  E-value=4.5e-12  Score=127.52  Aligned_cols=291  Identities=13%  Similarity=0.095  Sum_probs=170.5

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.+++.|.+.|+..+.+.|.++++      +|.+++++.+...++|..+||.+++++. ++||+..|.+.++..
T Consensus       102 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~  174 (400)
T PRK11646        102 LWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLF  174 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHH
Confidence            456677788888889999999999988643      4678999999999999999999999998 689999999988877


Q ss_pred             HHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCch
Q 014067           82 LLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE  161 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~  161 (431)
                      ++..++.....+..   ++  ++..+.   .    ++                                           
T Consensus       175 ~~~~i~~~~~~~~~---~~--~~~~~~---~----~~-------------------------------------------  199 (400)
T PRK11646        175 VLAAAFNAWLLPAY---KL--STVRTP---V----RE-------------------------------------------  199 (400)
T ss_pred             HHHHHHHHHhCCcc---cc--cccchh---h----HH-------------------------------------------
Confidence            76654433322211   00  000000   0    00                                           


Q ss_pred             hHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccCCCCcCchh
Q 014067          162 DIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFP  241 (431)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip~~~l~~~n  241 (431)
                                     .++    +-.+++ +...   +.+....++..+.|.....+...++   . ++.....+++.+++
T Consensus       200 ---------------~~~----~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~---~-~~~~~~~g~l~~~~  252 (400)
T PRK11646        200 ---------------GMT----RVLRDK-RFVT---YVLTLTGYYMLAVQVMLMLPIMVND---I-AGSPSAVKWMYAIE  252 (400)
T ss_pred             ---------------HHH----HHHcCc-hHHH---HHHHHHHHHHHHHHHHHhhhhhHHh---h-cCCchHHHHHHHHH
Confidence                           000    000111 1111   1111222333333322112221111   1 11001122333444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHH
Q 014067          242 VIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVA  321 (431)
Q Consensus       242 ~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli  321 (431)
                      .+..+.......++    ..|+      .+..+++..|.++.++++...+..+                     +.++.+
T Consensus       253 ~~~~~~~~~~~~~~----~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~~  301 (400)
T PRK11646        253 ACLSLTLLYPIARW----SEKR------FRLEHRLMAGLLIMSLSMFPIGMVS---------------------NLQQLF  301 (400)
T ss_pred             HHHHHHHHHHHHHH----HHHh------cchhHHHHHHHHHHHHHHHHHHHhh---------------------hHHHHH
Confidence            44333333222332    2221      2333457777777777766554432                     233444


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhH
Q 014067          322 LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLER  401 (431)
Q Consensus       322 ~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~  401 (431)
                      ...++.++++.+..|.....+.+.+|++.+|..+|++.+..++|..+|+.+.+.+.+.++..             +....
T Consensus       302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~-------------~~~~~  368 (400)
T PRK11646        302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL-------------NQPEL  368 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc-------------CCcch
Confidence            55677889999999999999999999999999999999999999999999998886443100             01123


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccc
Q 014067          402 FYWLMCILGGLNFLHFLFWAARYK  425 (431)
Q Consensus       402 ~f~~la~l~~v~~i~~~~~~~~~~  425 (431)
                      .|++.++++++..+.+....|+.|
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~  392 (400)
T PRK11646        369 PWMMLGIIGLITLLALYWQFSQKR  392 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhch
Confidence            456666666666666554444443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.42  E-value=4.5e-11  Score=120.02  Aligned_cols=81  Identities=19%  Similarity=0.317  Sum_probs=67.9

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.+++.|...|...+.+.|.++++      +|..++++++.+.++|.++++.+++.+.+..+|+..|.+.++..
T Consensus       106 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (406)
T PRK11551        106 LLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGP  179 (406)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence            356677888999999999999999999643      36778999999999999999999999989899999999888766


Q ss_pred             HHHHHHH
Q 014067           82 LLSIPIF   88 (431)
Q Consensus        82 ~i~~iif   88 (431)
                      ++..++.
T Consensus       180 ~~~~~~~  186 (406)
T PRK11551        180 LLLVPLL  186 (406)
T ss_pred             HHHHHHH
Confidence            6655433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.40  E-value=7.3e-11  Score=116.68  Aligned_cols=83  Identities=17%  Similarity=0.249  Sum_probs=70.6

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.++|.|...|...+.+.|.++++      +|.+.++++..+.++|.++++.+++++.++.+|++.|.+.++..
T Consensus        85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  158 (399)
T TIGR00893        85 LYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLG  158 (399)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            466778899999999999999999998643      46778999999999999999999999989999999999988877


Q ss_pred             HHHHHHHHh
Q 014067           82 LLSIPIFLL   90 (431)
Q Consensus        82 ~i~~iif~~   90 (431)
                      ++..++..+
T Consensus       159 ~~~~~~~~~  167 (399)
T TIGR00893       159 IIWGVLWLK  167 (399)
T ss_pred             HHHHHHhhh
Confidence            766554433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.39  E-value=6.7e-11  Score=118.36  Aligned_cols=279  Identities=11%  Similarity=0.085  Sum_probs=163.2

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.+++.+.+.|...+++.|+++++      +|.++++++..+.++|.+++|.+++.+.+++||++.|.+.++..
T Consensus       100 l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~  173 (390)
T PRK03545        100 LLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGA  173 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHH
Confidence            456677888888888899999999999754      36778999999999999999999999999899999999988877


Q ss_pred             HHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCch
Q 014067           82 LLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE  161 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~  161 (431)
                      ++..+......++    +|++++. . .+                                  +                
T Consensus       174 ~l~~~~~~~~~~~----~~~~~~~-~-~~----------------------------------~----------------  197 (390)
T PRK03545        174 LITLLLLIKLLPL----LPSEHSG-S-LK----------------------------------S----------------  197 (390)
T ss_pred             HHHHHHHHHhCCC----CCCCCcc-h-HH----------------------------------H----------------
Confidence            6665433332211    1111000 0 00                                  0                


Q ss_pred             hHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccCC---CCcC
Q 014067          162 DIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP---ASLP  238 (431)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip~---~~l~  238 (431)
                                      +   . +-.++ +.+...   +.........+....+.......  + ..|   .++   +.+.
T Consensus       198 ----------------~---~-~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~--~-~~g---~s~~~~~~~~  247 (390)
T PRK03545        198 ----------------L---P-LLFRR-PALVSL---YLLTVVVVTAHFTAYSYIEPFVQ--Q-VAG---LSENFATLLL  247 (390)
T ss_pred             ----------------H---H-HHHhC-cHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--H-hcC---CCccHHHHHH
Confidence                            0   0 00000 111111   11111111111111111111111  1 112   122   2333


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHH
Q 014067          239 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFL  318 (431)
Q Consensus       239 ~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~  318 (431)
                      ....+..++..++.+++    .+|.       . .+++.++..+.++++......                    ..+.+
T Consensus       248 ~~~~~~~~~g~~~~g~l----~dr~-------~-~~~~~~~~~~~~~~~~~l~~~--------------------~~~~~  295 (390)
T PRK03545        248 LLFGGAGIIGSVLFSRL----GNRH-------P-SGFLLIAIALLLVCLLLLLPA--------------------ANSEW  295 (390)
T ss_pred             HHHHHHHHHHHHHHHHH----hhcc-------c-hhHHHHHHHHHHHHHHHHHHH--------------------hchHH
Confidence            34444444554444443    3331       1 234555665555554433222                    12455


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcch
Q 014067          319 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYH  398 (431)
Q Consensus       319 wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~  398 (431)
                      +++...++.|++.....+...+.+.+.+|+ .++.++|++.....+|..+|+.+++.+.+..+                 
T Consensus       296 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-----------------  357 (390)
T PRK03545        296 HLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-----------------  357 (390)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------------
Confidence            666778889999988888888888888875 78999999998889999999999887752211                 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhh
Q 014067          399 LERFYWLMCILGGLNFLHFLFWAA  422 (431)
Q Consensus       399 l~~~f~~la~l~~v~~i~~~~~~~  422 (431)
                      +...|+..+++.+++++++....|
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        358 LSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcc
Confidence            124467777777777777665554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.39  E-value=3.2e-11  Score=120.95  Aligned_cols=298  Identities=13%  Similarity=0.114  Sum_probs=167.3

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.+++.+ +.|...+...|+++++      +|....+++..+.++|.+++|.+.+++.+..+|+..|.+.++..
T Consensus       110 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  182 (408)
T PRK09874        110 FLILRALLGLLGG-FVPNANALIATQVPRN------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVL  182 (408)
T ss_pred             HHHHHHHHHHhhh-hHHhHHHHHHHhcCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            3455666777755 4577777888887543      35677888899999999999999999998899999999988877


Q ss_pred             HHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCch
Q 014067           82 LLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE  161 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~  161 (431)
                      ++..+..+...+.-.  +|+.++.....       +                           +.               
T Consensus       183 ~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~---------------------------~~---------------  211 (408)
T PRK09874        183 FLCFLVTLFCIRENF--QPVSKKEMLHM-------R---------------------------EV---------------  211 (408)
T ss_pred             HHHHHHHHHHhccCc--ccccchhhhHH-------H---------------------------HH---------------
Confidence            766554433221100  11100000000       0                           00               


Q ss_pred             hHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccCCCCcCchh
Q 014067          162 DIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFP  241 (431)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip~~~l~~~n  241 (431)
                                      ++     ..++.+...   .+......+........+.+.....+...+......-.+.+..+.
T Consensus       212 ----------------~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  267 (408)
T PRK09874        212 ----------------VT-----SLKNPKLVL---SLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVP  267 (408)
T ss_pred             ----------------HH-----hCcCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence                            00     000011111   111111222222222222221111111111000000011122333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHH
Q 014067          242 VIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVA  321 (431)
Q Consensus       242 ~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli  321 (431)
                      .+..++..|+.+++.    +|.       ...+-+..++++.+++++.....                     .+.+++.
T Consensus       268 ~l~~~~~~~~~g~l~----dr~-------g~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~  315 (408)
T PRK09874        268 GVAALLSAPRLGKLG----DRI-------GPEKILITALIFSVLLLIPMSFV---------------------QTPLQLG  315 (408)
T ss_pred             HHHHHHHHHHHHHHH----hcc-------ccchhHHHHHHHHHHHHHHHHHh---------------------ccHHHHH
Confidence            444445555555543    332       22233445555555444443322                     1344455


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhH
Q 014067          322 LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLER  401 (431)
Q Consensus       322 ~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~  401 (431)
                      ...++.++++....|.....+.+.+|++.+|..+|++.....+|..+|+.+++.+.+..      +           ...
T Consensus       316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~------g-----------~~~  378 (408)
T PRK09874        316 ILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY------G-----------FRA  378 (408)
T ss_pred             HHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc------c-----------hhH
Confidence            66678899999999999999999999999999999999999999999999988775211      1           224


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccCC
Q 014067          402 FYWLMCILGGLNFLHFLFWAARYKYSSTG  430 (431)
Q Consensus       402 ~f~~la~l~~v~~i~~~~~~~~~~~~~~~  430 (431)
                      .|...+++.+++.++.....||.+.++.+
T Consensus       379 ~f~~~~~~~l~~~~~~~~~~~~~~~~~~~  407 (408)
T PRK09874        379 VFLVTAGVVLFNAVYSWNSLRRRRIPQVS  407 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            57778888888887777666666655443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.39  E-value=7.7e-11  Score=119.01  Aligned_cols=289  Identities=10%  Similarity=-0.027  Sum_probs=161.9

Q ss_pred             HHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHHH
Q 014067            4 AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL   83 (431)
Q Consensus         4 ~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~i   83 (431)
                      +...+.+++.|...|+..+.+.|.++++      ++.++.++++++.++|..+|+.+++++.+..||++.|.+.++..++
T Consensus       115 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~  188 (417)
T PRK10489        115 LLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFI  188 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444556777777788888888888643      3567788889999999999999999998888999999998887777


Q ss_pred             HHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCchhH
Q 014067           84 SIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDI  163 (431)
Q Consensus        84 ~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~  163 (431)
                      +.+.....++    .+|+..+..+..+-..                                                  
T Consensus       189 ~~~~~~~l~~----~~~~~~~~~~~~~~~~--------------------------------------------------  214 (417)
T PRK10489        189 TLLPLLRLPA----LPPPPQPREHPLRSLL--------------------------------------------------  214 (417)
T ss_pred             HHHHHHhCCC----CCCCCcccccchHHHH--------------------------------------------------
Confidence            6554432211    1111000000000000                                                  


Q ss_pred             HHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccC---CCCcCch
Q 014067          164 KFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVP---PASLPVF  240 (431)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip---~~~l~~~  240 (431)
                                  ..+     ..+-..+.+ +.  +++.... +.......+.++..   +....+   .+   .+++...
T Consensus       215 ------------~~~-----~~~~~~~~~-~~--~~~~~~~-~~~~~~~~~~~p~~---~~~~~g---~~~~~~g~~~~~  267 (417)
T PRK10489        215 ------------AGF-----RFLLASPVV-GG--IALLGGL-LTMASAVRVLYPAL---ADEVWQ---MGAAQIGLLYAA  267 (417)
T ss_pred             ------------HHH-----HHHHcChHH-HH--HHHHHHH-HHHHHhHHHhhHHH---HHhccC---CChhHhHHHHHH
Confidence                        000     000000111 11  1111111 11111111111111   111111   12   2334444


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHH
Q 014067          241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV  320 (431)
Q Consensus       241 n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wl  320 (431)
                      ..+..++..++.+++    .+|       .+..+-+..+.++.+++++..+..                     .+++..
T Consensus       268 ~~~g~~ig~~~~~~l----~~~-------~~~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~  315 (417)
T PRK10489        268 VPLGAALGALTSGWL----AHS-------ARPGLLMLLSTLGSFLAVGLFGLM---------------------PMWILA  315 (417)
T ss_pred             HHHHHHHHHHHHHHh----hhc-------cCcchHHHHHHHHHHHHHHHHHcc---------------------chHHHH
Confidence            444555555554443    222       122233556666666655443332                     233445


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhh
Q 014067          321 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE  400 (431)
Q Consensus       321 i~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~  400 (431)
                      +...++.+++.....+....++.+..|++.||..+|++.....+|..+|+.+.+.+.+..+                 ..
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-----------------~~  378 (417)
T PRK10489        316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-----------------PV  378 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-----------------hh
Confidence            5667788888888778888999999999999999999999999999999999887753221                 11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccc
Q 014067          401 RFYWLMCILGGLNFLHFLFWAARYKYSS  428 (431)
Q Consensus       401 ~~f~~la~l~~v~~i~~~~~~~~~~~~~  428 (431)
                      ..++..+++.++..++.....+++|.++
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (417)
T PRK10489        379 ASASASGFGLLIIGVLLLLVLGELRRFR  406 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            2355556655555555555556655443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.37  E-value=5.4e-11  Score=116.79  Aligned_cols=265  Identities=9%  Similarity=0.033  Sum_probs=157.3

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.+++.+...|...+++.|.++++      +|.+.++++..+.++|.+++|.+++++.++.||+..|.+.++..
T Consensus        95 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~  168 (365)
T TIGR00900        95 VYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGF  168 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            456777889999999999999999999754      46788999999999999999999999999899999999988877


Q ss_pred             HHHHHHHHhcCcceeecCCCCCchh-HHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCc
Q 014067           82 LLSIPIFLLGSPFYRNKIPTGSPLT-TIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPT  160 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p~~~~~~-~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~  160 (431)
                      +++.+.....+..-.+ +++.++.. +..+                                  +.              
T Consensus       169 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------------------~~--------------  199 (365)
T TIGR00900       169 AISALLIVSVRIPELA-ASEIQALSNAVLR----------------------------------DT--------------  199 (365)
T ss_pred             HHHHHHHHhcccccCC-CccccccchhHHH----------------------------------HH--------------
Confidence            7665544332211000 00000000 0000                                  00              


Q ss_pred             hhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhccc-chHHHHHHHhccCCCCcccCCCCcCc
Q 014067          161 EDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLS-TFSVQQAATMNTKLGSLKVPPASLPV  239 (431)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~-t~~~~~~~~~~~~~gg~~ip~~~l~~  239 (431)
                                            .+..++.++-..+..+.+...+++..+.... +..+....+. .+..  ....+.+..
T Consensus       200 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~  254 (365)
T TIGR00900       200 ----------------------REGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY-LGRG--STHYGWVLA  254 (365)
T ss_pred             ----------------------HhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCc--hHHHHHHHH
Confidence                                  0000000000011112222222222222211 1111111110 1111  011233344


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHH
Q 014067          240 FPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLW  319 (431)
Q Consensus       240 ~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~w  319 (431)
                      ...+..++..++..++    .+|.       ...+-+..+.++.++++.......                   + +.++
T Consensus       255 ~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~  303 (365)
T TIGR00900       255 AFGLGALLGALLLGLL----GRYF-------KRMALMTGAIFVIGLAILVVGLTP-------------------P-NFPL  303 (365)
T ss_pred             HHHHHHHHHHHHHHHH----HHHh-------chhHHHHHHHHHHHHHHHHHHhhc-------------------h-hHHH
Confidence            4444555555555433    2332       112234445555555555444331                   1 3556


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          320 VALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       320 li~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ++...++.+++.....+...+++.+..|++.||..+|++.....+|..+++.+.+.+.
T Consensus       304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       304 FLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778899999999999999999999999999999999999999999999998887764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.36  E-value=3.3e-10  Score=113.59  Aligned_cols=275  Identities=11%  Similarity=0.050  Sum_probs=160.0

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL   82 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~   82 (431)
                      ++...+.++|.+...++..+...|+++++      +|.++.+++..+.++|..+|+.+++++.++.||+..|.++++..+
T Consensus       116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~  189 (399)
T PRK05122        116 LLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL  189 (399)
T ss_pred             HHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            45567888999999999999999998654      356688888899999999999999999888999998887666544


Q ss_pred             HHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCchh
Q 014067           83 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTED  162 (431)
Q Consensus        83 i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~  162 (431)
                      +..+   +.++     .|+.++..                                .+.                     
T Consensus       190 ~~~~---~~~~-----~~~~~~~~--------------------------------~~~---------------------  208 (399)
T PRK05122        190 LGLL---LARP-----RPAVPPVK--------------------------------GER---------------------  208 (399)
T ss_pred             HHHH---HHhc-----CCCCCCCC--------------------------------ccc---------------------
Confidence            3322   2111     11110000                                000                     


Q ss_pred             HHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccCCCCcCchhH
Q 014067          163 IKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPV  242 (431)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip~~~l~~~n~  242 (431)
                                   ..+       .+..|+.......+   .++...+....+.......  +.+   .. ..+.......
T Consensus       209 -------------~~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~---~~-~~~~~~~~~~  259 (399)
T PRK05122        209 -------------LPF-------RRVLGRVWPYGMGL---ALASIGFGTIATFITLYYA--ARG---WD-GAALALTLFG  259 (399)
T ss_pred             -------------hhH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--Hcc---cc-cchHHHHHHH
Confidence                         000       01112211111111   1111112221111111111  111   10 1222233344


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHH
Q 014067          243 IFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL  322 (431)
Q Consensus       243 ~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~  322 (431)
                      +..++..++.+++.    +|.       ...+.+..+.++.++++...+..                     .+.++++.
T Consensus       260 ~~~~~~~~~~g~l~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~  307 (399)
T PRK05122        260 VAFVGARLLFGNLI----NRL-------GGLRVAIVSLLVEILGLLLLWLA---------------------PSPWMALI  307 (399)
T ss_pred             HHHHHHHHHHHHHH----HHh-------ccHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHH
Confidence            44444445554433    332       22234556666666666554442                     23445666


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHH
Q 014067          323 QYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERF  402 (431)
Q Consensus       323 ~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~  402 (431)
                      ..++.|++.....|.....+.+..|++.||..+|++.....+|..+++.+.+.+.+..                 .....
T Consensus       308 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-----------------g~~~~  370 (399)
T PRK05122        308 GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-----------------GYPSI  370 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------CHHHH
Confidence            7889999998888887788888999999999999999999999988887777664211                 12345


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 014067          403 YWLMCILGGLNFLHFLFWAA  422 (431)
Q Consensus       403 f~~la~l~~v~~i~~~~~~~  422 (431)
                      |++.+++.+++.++..+..+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        371 FLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            66667666666655554444

>PRK10054 putative transporter; Provisional

Probab=99.35  E-value=2.6e-11  Score=121.75  Aligned_cols=77  Identities=9%  Similarity=0.084  Sum_probs=61.5

Q ss_pred             HHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHHHH
Q 014067            5 GLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLS   84 (431)
Q Consensus         5 ~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~i~   84 (431)
                      ...+.+.+.+.+.|...+...|.++++      +|.+++++.|...|+|.+++|.+++++.+ .||+..|.+.++..+++
T Consensus       102 ~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~  174 (395)
T PRK10054        102 FFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFP  174 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHH
Confidence            344555666677788888888887643      46779999999999999999999999875 79999999988888777


Q ss_pred             HHHH
Q 014067           85 IPIF   88 (431)
Q Consensus        85 ~iif   88 (431)
                      ++..
T Consensus       175 ~i~~  178 (395)
T PRK10054        175 LVFI  178 (395)
T ss_pred             HHHH
Confidence            5433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.33  E-value=5.7e-10  Score=112.22  Aligned_cols=81  Identities=12%  Similarity=0.016  Sum_probs=65.3

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++...+.+++.+...+...+...|.++++      ++.+..++.+.+.++|..++|.+++++.++.+|+..|.+.++..
T Consensus       104 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~  177 (406)
T PRK15402        104 FTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALA  177 (406)
T ss_pred             HHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence            355667778888888888888899888654      24567778888888999999999999999899999999988887


Q ss_pred             HHHHHHH
Q 014067           82 LLSIPIF   88 (431)
Q Consensus        82 ~i~~iif   88 (431)
                      +++.+..
T Consensus       178 ~~~~~~~  184 (406)
T PRK15402        178 ALSFFGL  184 (406)
T ss_pred             HHHHHHH
Confidence            7766544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.32  E-value=4.2e-10  Score=112.39  Aligned_cols=272  Identities=13%  Similarity=0.041  Sum_probs=161.9

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL   82 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~   82 (431)
                      ++..++.+.+.+...|...++..+ +.       +++...++....+.++|..++|.+++++.+++||+..|.+.++...
T Consensus        98 ~~~~~l~~~~~~~~~p~~~al~~~-~~-------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~  169 (382)
T TIGR00902        98 FIAIGLFALFFSAGMPIGDALANT-WQ-------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA  169 (382)
T ss_pred             HHHHHHHHHHHccchhHHHHHHHH-HH-------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence            445556677777777877776543 21       1345679999999999999999999999999999999988766543


Q ss_pred             HHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCchh
Q 014067           83 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTED  162 (431)
Q Consensus        83 i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~  162 (431)
                      +..+.+ ..++.   .+|+++..                                ..+.                     
T Consensus       170 ~~~~~~-~~~~~---~~~~~~~~--------------------------------~~~~---------------------  192 (382)
T TIGR00902       170 FMLIGF-LIKPT---IPPKDAIP--------------------------------EDES---------------------  192 (382)
T ss_pred             HHHHHH-HcCCC---CCCCcccc--------------------------------cccc---------------------
Confidence            333322 21111   01111000                                0000                     


Q ss_pred             HHHHhhhccCCCCCCccccccchh-hHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccCC---CCcC
Q 014067          163 IKFLNRALRNNPAYPIVQCTVKEV-EEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP---ASLP  238 (431)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~v-~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip~---~~l~  238 (431)
                                   ...+  +..+. ++ |+   +..+.+...+++..+.+..+.....-+  |  .|   .++   +.+.
T Consensus       193 -------------~~~~--~~~~~l~~-~~---~~~~l~~~~l~~~~~~~~~~~~~~~l~--~--~g---~s~~~~g~l~  246 (382)
T TIGR00902       193 -------------QGDS--AFIALLKN-PM---NLRFLAAVCLIQGAHAAYYGFSAIYWQ--A--AG---ISASATGLLW  246 (382)
T ss_pred             -------------ccch--hHHHHHcC-hH---HHHHHHHHHHHHHHHHHHHHHHHHHHH--H--CC---CCHhHHHHHH
Confidence                         0000  00000 11 22   222233334444445554443322111  2  23   232   2334


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHH
Q 014067          239 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFL  318 (431)
Q Consensus       239 ~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~  318 (431)
                      .++.+..++..++.++    +.+|       .++.+-+.+|.++.++.+...++.                     .+++
T Consensus       247 ~~~~~~~i~~~~~~~~----l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~  294 (382)
T TIGR00902       247 GIGVLAEIIIFAFSNK----LFQN-------CSARDLLLISAIACVGRWAIIGAI---------------------EAFP  294 (382)
T ss_pred             HHHHHHHHHHHHHhHH----HHhh-------CCHHHHHHHHHHHHHHHHHHHHhH---------------------hhHH
Confidence            4444444444444443    4454       344455778888888887766554                     2455


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHH-HHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcc
Q 014067          319 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW-ASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY  397 (431)
Q Consensus       319 wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~  397 (431)
                      +++...+++++.+.+..+....++.+. |++.++..+|+++ ...++|..+++.+++.+.+..                +
T Consensus       295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~----------------g  357 (382)
T TIGR00902       295 LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL----------------G  357 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------c
Confidence            666667999999999999999999998 9999999999986 567889999998888875221                1


Q ss_pred             hhhHHHHHHHHHHHHHHHH
Q 014067          398 HLERFYWLMCILGGLNFLH  416 (431)
Q Consensus       398 ~l~~~f~~la~l~~v~~i~  416 (431)
                        ...|+.+++++++++++
T Consensus       358 --~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       358 --AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             --HHHHHHHHHHHHHHHHH
Confidence              13477778877766443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.32  E-value=3.4e-10  Score=116.01  Aligned_cols=81  Identities=14%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc-CchhHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWGFGISTAT   80 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i~~i~   80 (431)
                      +++..++.+++.|...|...+...+.++++      +|..+.++++.+.++|.++++.+++++.+++ ||+..|.+.++.
T Consensus       134 l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~  207 (465)
T TIGR00894       134 VVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIV  207 (465)
T ss_pred             HHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHH
Confidence            456677899999999999999999999754      3677899999999999999999999999884 999999998887


Q ss_pred             HHHHHHHH
Q 014067           81 ILLSIPIF   88 (431)
Q Consensus        81 ~~i~~iif   88 (431)
                      .++..++.
T Consensus       208 ~~~~~~~~  215 (465)
T TIGR00894       208 GCAWSLLW  215 (465)
T ss_pred             HHHHHHHH
Confidence            76665544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.31  E-value=3.1e-10  Score=110.41  Aligned_cols=259  Identities=18%  Similarity=0.233  Sum_probs=176.0

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.+++.+...+...++..|.++++      +|...+++.+.+.++|..+++.+++++.++.+|+..|.+.++..
T Consensus        90 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
T cd06174          90 LLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG  163 (352)
T ss_pred             HHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            456778889999999999999999999764      36778999999999999999999999999899999999998888


Q ss_pred             HHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCch
Q 014067           82 LLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE  161 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~  161 (431)
                      +++.++..+..             +...                                                    
T Consensus       164 ~~~~~~~~~~~-------------~~~~----------------------------------------------------  178 (352)
T cd06174         164 LLLALLLLFLL-------------RLLL----------------------------------------------------  178 (352)
T ss_pred             HHHHHHHHHHH-------------HHHH----------------------------------------------------
Confidence            87766543321             0000                                                    


Q ss_pred             hHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccCCCCcCchh
Q 014067          162 DIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFP  241 (431)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip~~~l~~~n  241 (431)
                                                         .+.+....++..+............+. .+..  ....+++....
T Consensus       179 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~  220 (352)
T cd06174         179 -----------------------------------LLALAFFLLSFGYYGLLTYLPLYLQEV-LGLS--AAEAGLLLSLF  220 (352)
T ss_pred             -----------------------------------HHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCC--HHHHHHHHHHH
Confidence                                               000001111111111111111110110 0100  11234556666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchh-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHH
Q 014067          242 VIFILILAPVYNHVIIPFARKVTKTEMGITHLQ-RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV  320 (431)
Q Consensus       242 ~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~-ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wl  320 (431)
                      .+..++..++..++.++..+|           + .+.++.++..++++.....+                     +.++.
T Consensus       221 ~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~---------------------~~~~~  268 (352)
T cd06174         221 GLGGILGALLGGLLSDRLGRR-----------RLLLLIGLLLAALGLLLLALAP---------------------SLALL  268 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHhc---------------------cHHHH
Confidence            777777777777655444322           2 46677777777776665532                     25677


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhh
Q 014067          321 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE  400 (431)
Q Consensus       321 i~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~  400 (431)
                      ....++.++++....+...+.+.+..|++.|+..+|++.....+|..+++.+.+.+.+..      +|           .
T Consensus       269 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~------~~-----------~  331 (352)
T cd06174         269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG------GY-----------G  331 (352)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Cc-----------c
Confidence            788999999999999999999999999999999999999999999999999988775211      12           2


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 014067          401 RFYWLMCILGGLNFLHFL  418 (431)
Q Consensus       401 ~~f~~la~l~~v~~i~~~  418 (431)
                      ..|.+.+++.+++.+++.
T Consensus       332 ~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         332 GVFLILAALALLAALLLL  349 (352)
T ss_pred             hHHHHHHHHHHHHHHHhe
Confidence            346666767666665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.30  E-value=3.6e-10  Score=112.84  Aligned_cols=255  Identities=13%  Similarity=0.038  Sum_probs=146.6

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL   82 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~   82 (431)
                      ++...+.+++.+...|...++..|..+        ++.+.++......++|..+||.+++++.+++||+..|.+.++..+
T Consensus        98 ~i~~~l~g~~~~~~~~~~~a~~~~~~~--------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~  169 (382)
T PRK11128         98 FVAIGLFNLFFSPLVPLTDALANTWQK--------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVA  169 (382)
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHHh--------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence            345566788888899988888777521        234567777888899999999999999999999999988887655


Q ss_pred             HHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCchh
Q 014067           83 LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTED  162 (431)
Q Consensus        83 i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~  162 (431)
                      +..+.. +..+   +.+|++++.+                               +.+    +      ..         
T Consensus       170 ~~~~~~-~~~~---~~~~~~~~~~-------------------------------~~~----~------~~---------  195 (382)
T PRK11128        170 SMLLGQ-LLRP---TIMPQGESRQ-------------------------------QES----A------GW---------  195 (382)
T ss_pred             HHHHHH-HccC---CCCCcccccc-------------------------------ccc----c------cc---------
Confidence            544332 2211   1111110000                               000    0      00         


Q ss_pred             HHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccCCCCcCchhH
Q 014067          163 IKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPV  242 (431)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip~~~l~~~n~  242 (431)
                                   ..+     .+.-..|++   ..+.+...+.+..+.+..+......+  |.  |.-.-..+.+..++.
T Consensus       196 -------------~~~-----~~i~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~--~~--g~s~~~~g~~~~~~~  250 (382)
T PRK11128        196 -------------PAW-----KALLKEPTV---WRFLLCVSLLQGSHAAYYGFSAIYWQ--AA--GYSASTIGYLWSLGV  250 (382)
T ss_pred             -------------chH-----HHHHcChhH---HHHHHHHHHHHHHhHhHHHHHHHHHH--HC--CCCHhHHHHHHHHHH
Confidence                         000     000001122   22222223333333333322222111  11  200011234455565


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHH
Q 014067          243 IFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL  322 (431)
Q Consensus       243 ~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~  322 (431)
                      +..++..++.+++.    +|.       +..+.+.+++++.+++++..+..                     .+++++++
T Consensus       251 ~~~~~~~~~~g~l~----~r~-------~~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~  298 (382)
T PRK11128        251 VAEVLIFAFSNRLF----RRW-------SARDLLLLSAICGVVRWGLMGST---------------------TALPWLIV  298 (382)
T ss_pred             HHHHHHHHHHHHHH----HHC-------CHHHHHHHHHHHHHHHHHHHHhh---------------------hhHHHHHH
Confidence            55555555555543    442       33344667777777766554443                     24566677


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHH-HHHHHHHHHhhhhhhhhc
Q 014067          323 QYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW-ASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       323 ~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~l~~~l~~~~~  377 (431)
                      ..++.++++.+..+....++.++. ++.++.++++.. +..++|..+|+.+++.+.
T Consensus       299 ~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~  353 (382)
T PRK11128        299 IQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLY  353 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999988874 555688899886 556778788888887775

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.30  E-value=5.2e-10  Score=113.74  Aligned_cols=83  Identities=22%  Similarity=0.348  Sum_probs=68.6

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhh---hhcccccCchhHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV---VWIEDNKGWQWGFGIST   78 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~---~~l~~~~g~~~~F~i~~   78 (431)
                      ++++..+.++|.|...+...++++|.++++      +|..+.++++.+.++|.++++.++   +.+.+..||++.|.+.+
T Consensus       130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~  203 (481)
T TIGR00879       130 LIVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQL  203 (481)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence            466788899999999999999999999754      366788999999999999999999   77777889999999977


Q ss_pred             HHHHHHHHHHHh
Q 014067           79 ATILLSIPIFLL   90 (431)
Q Consensus        79 i~~~i~~iif~~   90 (431)
                      +..++..+..++
T Consensus       204 ~~~~~~~~~~~~  215 (481)
T TIGR00879       204 IPAGLLFLGLFF  215 (481)
T ss_pred             HHHHHHHHHHhc
Confidence            766665544433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.29  E-value=4.6e-11  Score=116.78  Aligned_cols=264  Identities=14%  Similarity=0.193  Sum_probs=156.3

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.++|.+...|...+++.|.++++      +|...+++...+.++|.++++.+++++.+++||+..|.+.++..
T Consensus        88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~  161 (352)
T PF07690_consen   88 LLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILS  161 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHH
T ss_pred             Hhhhccccccccccccccccccccccchhh------hhhhccccccchhhhhhhcccchhhhhhhccccccccccccchh
Confidence            567788999999999999999999999875      36778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCch
Q 014067           82 LLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE  161 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~  161 (431)
                      ++..++.....+   +++++.....                               +.+    +...             
T Consensus       162 ~~~~il~~~~~~---~~~~~~~~~~-------------------------------~~~----~~~~-------------  190 (352)
T PF07690_consen  162 LIAAILFILFLP---EPPPPRERES-------------------------------PKE----SESK-------------  190 (352)
T ss_dssp             HHHHHHHHCCC------STTTT--S-------------------------------STT----TT---------------
T ss_pred             hhhhhhHhhhhh---hccccccccc-------------------------------ccc----cccc-------------
Confidence            988775433221   1111110000                               000    0000             


Q ss_pred             hHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHH-HHHhccCCCCcccCCCCcCch
Q 014067          162 DIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQ-AATMNTKLGSLKVPPASLPVF  240 (431)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~-~~~~~~~~gg~~ip~~~l~~~  240 (431)
                                  .+.++.. ..+...+.+.+.   .+++....+...+....+..... .+..+.+  +. ...+.+..+
T Consensus       191 ------------~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~~  251 (352)
T PF07690_consen  191 ------------KPKPLKP-GFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFS--GP-SQAGLLFSI  251 (352)
T ss_dssp             ------------HHHCCCH--CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC--TH-HHHHHHHHH
T ss_pred             ------------ccccccc-ccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhccCCC--HH-HHHHHHHHH
Confidence                        0000000 000111111111   12222222222332222222211 1111111  00 112233444


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHH
Q 014067          241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV  320 (431)
Q Consensus       241 n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wl  320 (431)
                      ..+..++..++.+++.    +|.       +..++..+......++.+...+...                  ..+..|.
T Consensus       252 ~~~~~~~~~~~~~~l~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~  302 (352)
T PF07690_consen  252 FGIVGIIGSLLAGRLS----DRF-------GRRRRLLIAILLLILGALGLLLLPF------------------SSSPVWL  302 (352)
T ss_dssp             HHHHHHHHHHHHHHHH----HHT-------TCHHHHHHHHHHHHHHHHHHCCSHH------------------HCHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----HHc-------CcHHHHHHHHHHHHHHHHHHHHHHH------------------hhhHHHH
Confidence            4555555555665554    331       2223344444444443333333210                  1245677


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhh
Q 014067          321 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFST  370 (431)
Q Consensus       321 i~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~  370 (431)
                      +...++.|++..+..+.....+.+.+|++.+|.++|+.....++|..+||
T Consensus       303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            77888999999999999999999999999999999999999999999875

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK12382 putative transporter; Provisional

Probab=99.26  E-value=1.2e-09  Score=109.21  Aligned_cols=274  Identities=9%  Similarity=0.026  Sum_probs=158.5

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.++|.+...|...+.+.|.++++      +|.++++++..+.++|.+++|.+++++.+.+||+..+.+..+..
T Consensus       115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~  188 (392)
T PRK12382        115 LVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLP  188 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            345667788888888888888888888644      36778899999999999999999999988899998776554433


Q ss_pred             HHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCch
Q 014067           82 LLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE  161 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~  161 (431)
                      ++...   +.+ +.++.+++++.                                 + .                     
T Consensus       189 ~~~~~---~~~-~~~~~~~~~~~---------------------------------~-~---------------------  209 (392)
T PRK12382        189 LLAWA---FNG-TVRKVPAHAGE---------------------------------R-P---------------------  209 (392)
T ss_pred             HHHHH---HHH-hccCCCCCccc---------------------------------C-c---------------------
Confidence            32222   211 11110110000                                 0 0                     


Q ss_pred             hHHHHhhhccCCCCCCccccccchhhHHHHHHhH-HHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccCCCCcCch
Q 014067          162 DIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKI-FPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVF  240 (431)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~-l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip~~~l~~~  240 (431)
                                    ..+        +..|.+.+. +.+.+....+.......+ .+ .+    +.+   +. +.+.....
T Consensus       210 --------------~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~-~~----~~~---~~-~~~~~~~~  257 (392)
T PRK12382        210 --------------SLW--------SVVGLIWKPGLGLALQGVGFAVIGTFVS-LY-FA----SKG---WA-MAGFTLTA  257 (392)
T ss_pred             --------------hHH--------HHHHHHHHhHHHHHHHHHHHhHHHHHHH-HH-HH----hcC---Cc-hhHHHHHH
Confidence                          000        001111110 001111111111111111 11 11    111   10 11222333


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHH
Q 014067          241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV  320 (431)
Q Consensus       241 n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wl  320 (431)
                      ..+..++..++.+++.    +|.       .+.+.+.++..+.+++++.....                     .+.++.
T Consensus       258 ~~~~~~~~~~~~g~l~----~r~-------g~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~  305 (392)
T PRK12382        258 FGGAFVLMRVLFGWMP----DRF-------GGVKVAIVSLLVETVGLLLLWLA---------------------PTAWVA  305 (392)
T ss_pred             HHHHHHHHHHHHHHHH----Hhc-------CCCeehHHHHHHHHHHHHHHHHc---------------------ccHHHH
Confidence            4444455556655544    332       22233556777777766554432                     134455


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhh
Q 014067          321 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE  400 (431)
Q Consensus       321 i~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~  400 (431)
                      ++..++.++++....|.....+.+.+|++.||..+|+++....+|+.+++.+.+.+.+..      +|           .
T Consensus       306 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~------g~-----------~  368 (392)
T PRK12382        306 LAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF------GY-----------P  368 (392)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------Cc-----------h
Confidence            667788999998888888888889999999999999999999999999998888775321      12           2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 014067          401 RFYWLMCILGGLNFLHFLFWA  421 (431)
Q Consensus       401 ~~f~~la~l~~v~~i~~~~~~  421 (431)
                      ..|.+.+++.+++.++.+...
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        369 SVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            456777777777666555443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.22  E-value=6.4e-10  Score=126.38  Aligned_cols=279  Identities=10%  Similarity=-0.028  Sum_probs=160.2

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++++++.+++.+.+.|...+++.|.++++      ++..+.+++.++.++|.++||.+++++.+..||+..|.+.++..
T Consensus       111 l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~  184 (1140)
T PRK06814        111 LFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIA  184 (1140)
T ss_pred             HHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            577888999999999999999999999865      36779999999999999999999999999999999985444444


Q ss_pred             HHHHHHHHhcCcceeecCCCCCchh---HHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCC
Q 014067           82 LLSIPIFLLGSPFYRNKIPTGSPLT---TIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQK  158 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p~~~~~~---~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~  158 (431)
                      ++++++.+...+    .+++....+   ...+-...                                            
T Consensus       185 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------------------------------------------  216 (1140)
T PRK06814        185 VLGWLASLFIPK----TGNAAPDLKIDRNIIRSTIT--------------------------------------------  216 (1140)
T ss_pred             HHHHHHHhhCCC----CCCCCCCCeeccchHHHHHH--------------------------------------------
Confidence            444333222111    111100000   00000000                                            


Q ss_pred             CchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccCCCCcC
Q 014067          159 PTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLP  238 (431)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip~~~l~  238 (431)
                                                .....++-..+..+.+....++.++....+.++....+   .+|.-..-.+++.
T Consensus       217 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~g~~~~~~g~~~  267 (1140)
T PRK06814        217 --------------------------LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKE---TLGGDENVATLFL  267 (1140)
T ss_pred             --------------------------HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HcCCchHHHHHHH
Confidence                                      00000000011112222223333332222222222111   1120001134556


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC--CCCcchh
Q 014067          239 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNS--SEPLPIT  316 (431)
Q Consensus       239 ~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~s  316 (431)
                      +...+..++...+..++.    ++.       ...+.+..|.++.+++.+.+++...   +........-.  .-....+
T Consensus       268 ~~~~~g~~ig~~~~g~l~----~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~  333 (1140)
T PRK06814        268 AVFSVGVAVGSFLASKLS----EGR-------ITLLYVPIGALLMGLFGLDLAFASS---SVPAEPAQLKSILVFLSKRH  333 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHh----CCc-------eeeeeehHHHHHHHHHHHHHHhccc---ccccccccccchhhhhcccc
Confidence            667777777777766643    221       1122344555555444443333100   00000000000  0000135


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          317 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       317 ~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .|++++..++.|++..+..+...+++.+.+|++++|.++|++++...+|..+++.+++.+.
T Consensus       334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677788899999999999999999999999999999999999999999999998887774

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.19  E-value=9.1e-09  Score=102.09  Aligned_cols=83  Identities=13%  Similarity=0.132  Sum_probs=70.2

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.++|.+...+...+++.|.++++      +|.+.+++++...++|..+++.+++++.++.||+..|.+.++..
T Consensus        96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  169 (385)
T TIGR00710        96 LLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAG  169 (385)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            456677889999999999999999998743      36778999999999999999999999999899999999888877


Q ss_pred             HHHHHHHHh
Q 014067           82 LLSIPIFLL   90 (431)
Q Consensus        82 ~i~~iif~~   90 (431)
                      ++..+...+
T Consensus       170 ~~~~~~~~~  178 (385)
T TIGR00710       170 ILLSALIFF  178 (385)
T ss_pred             HHHHHHHHH
Confidence            776655544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.19  E-value=3.8e-09  Score=104.53  Aligned_cols=83  Identities=14%  Similarity=0.107  Sum_probs=58.7

Q ss_pred             HHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHHH
Q 014067            4 AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL   83 (431)
Q Consensus         4 ~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~i   83 (431)
                      +...+.+.+.+...|...++..+..++++    +.+....++.+.+.++|..+++.+++++.+++||++.|.+.++..++
T Consensus        92 ~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~  167 (375)
T TIGR00899        92 VLGVLLSSFASTANPQLFALAREHADRTG----REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVL  167 (375)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHH
Confidence            33445555566667777777776654321    11112357778889999999999999999989999999999888777


Q ss_pred             HHHHHHh
Q 014067           84 SIPIFLL   90 (431)
Q Consensus        84 ~~iif~~   90 (431)
                      ..++.++
T Consensus       168 ~~~~~~~  174 (375)
T TIGR00899       168 CGVLVWL  174 (375)
T ss_pred             HHHHHHH
Confidence            6654443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.19  E-value=5.2e-10  Score=114.50  Aligned_cols=276  Identities=11%  Similarity=0.012  Sum_probs=150.1

Q ss_pred             HHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHHHHHH
Q 014067            7 YIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP   86 (431)
Q Consensus         7 ~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~i~~i   86 (431)
                      .+.++|.|...+...+.+.+.++ +      +|..+.++.+.+.++|..++|.+.+++.+.+||++.|.+.++..++..+
T Consensus       116 ~l~G~~~~~~~~~~~~~~~~~~~-~------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v  188 (455)
T TIGR00892       116 FITGLGLAFNFQPSLTMLGKYFY-R------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCV  188 (455)
T ss_pred             HHHHhcchhhhhHHHHHHHHHHH-h------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            45678888765555677778773 1      3577899999999999999999999999999999999999988877665


Q ss_pred             HHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCchhHHHH
Q 014067           87 IFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFL  166 (431)
Q Consensus        87 if~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  166 (431)
                      ...+.++.-..  ++..+...          +....              .+...   ++...  ...            
T Consensus       189 ~~~~~~~~~~~--~~~~~~~~----------~~~~~--------------~~~~~---~~~~~--~~~------------  225 (455)
T TIGR00892       189 CGALMRPVGPS--QRVSKSKS----------KEGLP--------------PDGST---KKLSK--KST------------  225 (455)
T ss_pred             HHHHhCCCCcc--cccccccc----------cccCC--------------CCCcc---ccccc--cch------------
Confidence            44443321110  00000000          00000              00000   00000  000            


Q ss_pred             hhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccCCCCcCchhHHHHH
Q 014067          167 NRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFIL  246 (431)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip~~~l~~~n~~~ii  246 (431)
                          .+ +...+.  ..+-.++ +.   +....+...+....+....+.+.....  |.+..  .-..+.+.++..+..+
T Consensus       226 ----~~-~~~~~~--~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s--~~~~g~~~~~~~~~~~  290 (455)
T TIGR00892       226 ----AE-KINRFL--DFSLFTH-RG---FLVYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD--EYEAAFLLSIIGFVDI  290 (455)
T ss_pred             ----hh-hhhhhc--chHHhcC-ch---HHHHHHHHHHHHHHccchHHHHHHHHH--HcCCC--HHHHHHHHHHHHHHHH
Confidence                00 000000  0000000 11   111212222222222222222221111  22211  1112345556666666


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCchhh--hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHH
Q 014067          247 ILAPVYNHVIIPFARKVTKTEMGITHLQR--IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQY  324 (431)
Q Consensus       247 l~~pl~~~~~~pl~~~~~~~~~~~s~~~k--i~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~  324 (431)
                      +..|+..++.+    |..     ..+.++  +.+++++.+++++.....                     .+.++++...
T Consensus       291 ~~~~~~g~l~d----~~~-----~~~~~~~~~~~~~~~~~l~~ll~~~~---------------------~~~~~~~i~~  340 (455)
T TIGR00892       291 FARPSCGLIAG----LKW-----IRPHVQYLFSFALLFNGLTHLLCALA---------------------GDYTGLVIYC  340 (455)
T ss_pred             HHHHHHHHHhc----ccc-----cCHHHHHHHHHHHHHHHHHHHHHHHh---------------------chHHHHHHHH
Confidence            77777666542    211     112222  333344444433332221                     2455667778


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          325 LFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       325 ~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ++.+++.....+...+.+.+..|++.+|..+|++.....+|+.+|+.+.+.+.
T Consensus       341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  393 (455)
T TIGR00892       341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV  393 (455)
T ss_pred             HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence            89999998888999999999999999999999999999999999999988765

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.17  E-value=4.7e-09  Score=108.63  Aligned_cols=261  Identities=14%  Similarity=0.126  Sum_probs=160.2

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++..++++++.+.+.|.-++.+.+..++++      ...+.++.-...|+.-++||.++|.+....|-...|.+.+++.
T Consensus       106 Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsf  179 (524)
T PF05977_consen  106 LLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSF  179 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555678999999999999999999998653      5678888999999999999999999988889999999999998


Q ss_pred             HHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCch
Q 014067           82 LLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE  161 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~  161 (431)
                      ++++..+...++..   +++..+-.+..+-++...|.                                           
T Consensus       180 l~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~ry-------------------------------------------  213 (524)
T PF05977_consen  180 LISILALLRWKPPP---PPSSLPRERFFSALREGLRY-------------------------------------------  213 (524)
T ss_pred             HHHHHHHHHccccc---cccccchhhhhhhHHHHHHH-------------------------------------------
Confidence            88766555544322   11111111111111100000                                           


Q ss_pred             hHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHH-HHhccCCCCcccCCCCcCch
Q 014067          162 DIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATMNTKLGSLKVPPASLPVF  240 (431)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~-~~~~~~~gg~~ip~~~l~~~  240 (431)
                                              +..-+.+...+   +...++.....-....++..+ +.++.  +  ..-.+.+.+.
T Consensus       214 ------------------------v~~~~~l~~~l---~~~~~~~l~~~a~~aLlPl~a~~~l~~--~--a~~yGll~a~  262 (524)
T PF05977_consen  214 ------------------------VRSSPPLRSVL---LRSFLFNLFASAVWALLPLFARDVLGG--G--ASGYGLLLAA  262 (524)
T ss_pred             ------------------------HhcchHHHHHH---HHHHHHHHhhhHHHHhhhHHHHHHhCC--c--HHHHHHHHHH
Confidence                                    00001111111   111111111111111222322 22221  1  0011223333


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHH
Q 014067          241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV  320 (431)
Q Consensus       241 n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wl  320 (431)
                      -++-.     +.+.++.+..+++      .+..+-+..+.++.+++++.+++.                     -+.|..
T Consensus       263 ~gvGa-----i~Gal~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~---------------------~~~~~~  310 (524)
T PF05977_consen  263 FGVGA-----ILGALLLPRLRRR------LSSRRLVLLASLLFALALLLLALS---------------------PSFWLA  310 (524)
T ss_pred             HHHHH-----HHHHHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcc---------------------hHHHHH
Confidence            33333     3333444444432      344444667777777776666554                     245566


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          321 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       321 i~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ++..++.|++...........+-+.+|++++|++++++......+..+|..+.+.+.
T Consensus       311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la  367 (524)
T PF05977_consen  311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA  367 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778889999999999999999999999999999999999888777778887777765

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00901 2A0125 AmpG-related permease

Probab=99.17  E-value=3.3e-09  Score=104.63  Aligned_cols=252  Identities=10%  Similarity=0.056  Sum_probs=143.6

Q ss_pred             HHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccC--------chhHHHHHHH
Q 014067            8 IVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG--------WQWGFGISTA   79 (431)
Q Consensus         8 li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g--------~~~~F~i~~i   79 (431)
                      +.+++.+...+...+++.|.++++      +|..+.++...+.++|.++++.+++++..+.|        |+..|.+.++
T Consensus        92 ~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai  165 (356)
T TIGR00901        92 LIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTAL  165 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHH
Confidence            456777778899999999999643      36778899999999999999999999988888        9999999999


Q ss_pred             HHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCC
Q 014067           80 TILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKP  159 (431)
Q Consensus        80 ~~~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~  159 (431)
                      ..+++.++.++..|+-.+++++++   +..+-.+..                                            
T Consensus       166 ~~l~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~--------------------------------------------  198 (356)
T TIGR00901       166 LILPGLLVTLFLAKEPQEDASVPK---PLTQAVLKP--------------------------------------------  198 (356)
T ss_pred             HHHHHHHHHHHhccCCCcccccch---hHHHHHHHH--------------------------------------------
Confidence            887766544433221100001000   000000000                                            


Q ss_pred             chhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccCCCC---
Q 014067          160 TEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPAS---  236 (431)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip~~~---  236 (431)
                                        +     .+.-..+...++..+.+...++...+.+..+.......+  .  |   .+++.   
T Consensus       199 ------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~--g---~~~~~~g~  248 (356)
T TIGR00901       199 ------------------I-----REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD--M--G---FSKEEIAL  248 (356)
T ss_pred             ------------------H-----HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c--C---CCHHHHHH
Confidence                              0     000000110112223333333444444443333322222  1  2   23332   


Q ss_pred             cCchhH-HHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          237 LPVFPV-IFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       237 l~~~n~-~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      +..... +..++..++..++.    +|       .+..+.+.+++++.+++.....+...    ..+..+      ....
T Consensus       249 ~~~~~~~~~~~~g~~~~g~l~----~r-------~g~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~  307 (356)
T TIGR00901       249 VAKINGLLGAILGGLIGGIIM----QP-------LNILYALLLFGIVQALTNAGFVWLAS----NGHHDG------ITFP  307 (356)
T ss_pred             HhHHHHHHHHHHHHHHHHHHH----hh-------hhHHHHHHHHHHHHHHHHHHHHHHHh----cCcccc------cccc
Confidence            233333 23344444444444    33       23334466777777666655444310    000000      0013


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHH
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLA  363 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~  363 (431)
                      +.++++...++.++++.+..+....+..+.+|+++||..+|+.....+
T Consensus       308 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       308 HLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            455677778899999999999999999999999999999999877654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.16  E-value=4.1e-09  Score=105.67  Aligned_cols=72  Identities=10%  Similarity=0.097  Sum_probs=51.7

Q ss_pred             cCcccCchhhhcccCCCCChhhhhhhhhHH-HHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHHHHHHHHHh
Q 014067           14 GGIKGSLAPHGAEQYDETTQLGRKQRSAFF-NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL   90 (431)
Q Consensus        14 g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f-~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~i~~iif~~   90 (431)
                      +...|...++..|+.++++     |....+ ++...+.++|.+++|.+++++.+++||+..|.+.++..++..+..+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        120 STANPQMFALAREHADKTG-----REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HhhHHHHHHHHHHHhhhcc-----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            3456666677766654321     122233 57888999999999999999999999999999988776666554433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.15  E-value=1.8e-08  Score=100.06  Aligned_cols=82  Identities=11%  Similarity=0.210  Sum_probs=68.5

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++...+.+++.+...+...++..|.++++      +|.+.+++.+.+.++|..++|.+++++.+..||+..|.+.++..
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  155 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAA  155 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence            355677788999999999999999998644      36778999999999999999999999999899999999888777


Q ss_pred             HHHHHHHH
Q 014067           82 LLSIPIFL   89 (431)
Q Consensus        82 ~i~~iif~   89 (431)
                      ++..+...
T Consensus       156 ~~~~~~~~  163 (377)
T PRK11102        156 ILAAALVF  163 (377)
T ss_pred             HHHHHHHH
Confidence            76655443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.15  E-value=2.5e-09  Score=110.70  Aligned_cols=84  Identities=18%  Similarity=0.144  Sum_probs=69.1

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.++|.|+..|...+.+.+.+.+++     +|.++++++..+.++|..+||.+++++.+++||++.|.+.....
T Consensus        97 li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~  171 (495)
T PRK14995         97 LIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIV  171 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Confidence            4677788999999999988888888775331     46778999999999999999999999999999999999887766


Q ss_pred             HHHHHHHHh
Q 014067           82 LLSIPIFLL   90 (431)
Q Consensus        82 ~i~~iif~~   90 (431)
                      ++.+++...
T Consensus       172 ~~~~~l~~~  180 (495)
T PRK14995        172 LVVMGLTAR  180 (495)
T ss_pred             HHHHHHHHH
Confidence            666554433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.14  E-value=1.1e-08  Score=105.61  Aligned_cols=81  Identities=17%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc-ccCchhHHHHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-NKGWQWGFGISTATI   81 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~-~~g~~~~F~i~~i~~   81 (431)
                      ++...+.+++.+...+...++..|.++++      +|.++.++.-.+.++|.++++.+++++.+ ..||+..|.+.++..
T Consensus       111 ~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~  184 (491)
T PRK11010        111 AALAVVIAFCSASQDIVFDAWKTDVLPAE------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALL  184 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence            34455677888889999999999998744      35667888889999999999999999988 479999999988877


Q ss_pred             HHHHHHHH
Q 014067           82 LLSIPIFL   89 (431)
Q Consensus        82 ~i~~iif~   89 (431)
                      ++..+..+
T Consensus       185 ll~~l~~~  192 (491)
T PRK11010        185 IPCIIATL  192 (491)
T ss_pred             HHHHHHHH
Confidence            77655433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.13  E-value=1.2e-08  Score=103.87  Aligned_cols=78  Identities=17%  Similarity=0.116  Sum_probs=64.5

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL   82 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~   82 (431)
                      ++...+.+++.|...|...+.+.++++++      +|..+.++++.+.++|..+++.+++++.+++||++.|.+.++..+
T Consensus       115 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~  188 (434)
T PRK11663        115 ALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAI  188 (434)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            34455667888888899999999999643      367789999999999999999999999999999999998887665


Q ss_pred             HHHH
Q 014067           83 LSIP   86 (431)
Q Consensus        83 i~~i   86 (431)
                      +..+
T Consensus       189 ~~~~  192 (434)
T PRK11663        189 VVGL  192 (434)
T ss_pred             HHHH
Confidence            5443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.13  E-value=1.9e-08  Score=103.31  Aligned_cols=81  Identities=20%  Similarity=0.266  Sum_probs=64.6

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc--------cccCchhHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQWGF   74 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~--------~~~g~~~~F   74 (431)
                      ++++++.++|.|+.-|...++++|+++++      +|..+.+++-.+..+|.++++.++..+.        +++||++.|
T Consensus       124 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f  197 (479)
T PRK10077        124 VIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMF  197 (479)
T ss_pred             HHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHH
Confidence            56778889999999999999999999754      3566788888899999999887765442        457999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 014067           75 GISTATILLSIPIFL   89 (431)
Q Consensus        75 ~i~~i~~~i~~iif~   89 (431)
                      .+.++..++..+..+
T Consensus       198 ~~~~~~~~~~~~~~~  212 (479)
T PRK10077        198 ASEAIPALLFLMLLY  212 (479)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            988877776654433

>TIGR00895 2A0115 benzoate transport

Probab=99.13  E-value=7.4e-09  Score=102.84  Aligned_cols=81  Identities=20%  Similarity=0.299  Sum_probs=67.7

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.++|.|...|...+.+.|.++++      +|..+++++..+.++|..+++.+.+++.++.||+..|.+.++..
T Consensus       108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~  181 (398)
T TIGR00895       108 LLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP  181 (398)
T ss_pred             HHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHH
Confidence            456778899999999999999999998643      36778999999999999999999999999999999999887555


Q ss_pred             HHHHHHH
Q 014067           82 LLSIPIF   88 (431)
Q Consensus        82 ~i~~iif   88 (431)
                      ++..++.
T Consensus       182 ~~~~~~~  188 (398)
T TIGR00895       182 LLLLLLL  188 (398)
T ss_pred             HHHHHHH
Confidence            5544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.12  E-value=2.9e-09  Score=109.39  Aligned_cols=306  Identities=15%  Similarity=0.110  Sum_probs=161.9

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.++|.|...|...+.+.|.++++      +|..++++++.+.++|..++|.+++++.+++||++.|.+.++..
T Consensus        93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~  166 (485)
T TIGR00711        93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIG  166 (485)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHH
Confidence            456777889999999999999999999643      36778999999999999999999999999999999999887766


Q ss_pred             HHHHHHHHhcCcceeecCCCCCchhHHHH--------HHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcc-cccccccC
Q 014067           82 LLSIPIFLLGSPFYRNKIPTGSPLTTIFK--------VLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD-EGNSNVKE  152 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p~~~~~~~~~~--------v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~  152 (431)
                      ++..++..+..+.-+  +.+.++......        .+.....+..                    ...| +...+...
T Consensus       167 ~~~~~~~~~~~~~~~--~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~  224 (485)
T TIGR00711       167 IIVVVVAFFILPRDK--PAASENFDFLGLLLLSVGLGSLLYGLSEGP--------------------ERGWFDSNEILIL  224 (485)
T ss_pred             HHHHHHHHHHcCCcc--ccccCCCcHHHHHHHHHHHHHHHHHHhhCC--------------------CCCCCCchHHHHH
Confidence            666554433332211  111111110000        0000000000                    0001 00000000


Q ss_pred             CCCCCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCc-c
Q 014067          153 KVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSL-K  231 (431)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~-~  231 (431)
                      ...  ....-..+..+....+  .+..  +.+-.++ |.+   ....+...+....+....+..+....+   ..| . .
T Consensus       225 ~~~--~~~~~~~~~~~~~~~~--~~~~--~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~g-~s~  290 (485)
T TIGR00711       225 SIT--GLVAIIAFVVWELTDD--NPLV--DLRLFKY-RNF---TIGCVYMSLLGLGLYGSFYLLPLYLQQ---VLG-YTA  290 (485)
T ss_pred             HHH--HHHHHHHHHHHHHcCC--CCcc--CHHHHcC-CCh---HHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC-CCH
Confidence            000  0000000000000000  0100  0000000 111   111111222222222211111211111   111 1 0


Q ss_pred             cCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 014067          232 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE  311 (431)
Q Consensus       232 ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~  311 (431)
                      ...+.+.....+..++..|+..++.++.           +..+-+.+|.++.+++...+.+.-             +   
T Consensus       291 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----------~~~~~~~~g~~~~~~~~~~~~~~~-------------~---  343 (485)
T TIGR00711       291 LQAGLHILPVGLAPMLSSPIAGRMGDKI-----------DPRKLVTIGLILYAVGFYWRAFTF-------------T---  343 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------CcHHHHHHHHHHHHHHHHHHhccC-------------C---
Confidence            1123445556666677777776654322           222335667777776666554210             0   


Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          312 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       312 ~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                       ...+.++++...++.++|..+..+.....+.+..|++.+|.++|++++...+|+.+|+.+.+.+-
T Consensus       344 -~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       344 -PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             12345566667889999998888777788888899999999999999999999999887766553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.12  E-value=4e-09  Score=103.87  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=62.7

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.++|.|...+...+...+.+++       +|..+.+++..+.++|.++++.+.+.+.+..||+..|.+.++..
T Consensus        94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~  166 (377)
T TIGR00890        94 LYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIF  166 (377)
T ss_pred             HHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            45667788888888878887877777742       25668888999999999887777777777789999999988877


Q ss_pred             HHHHHHHH
Q 014067           82 LLSIPIFL   89 (431)
Q Consensus        82 ~i~~iif~   89 (431)
                      ++..+..+
T Consensus       167 ~~~~~~~~  174 (377)
T TIGR00890       167 LLVIVLGA  174 (377)
T ss_pred             HHHHHHHH
Confidence            77655443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.11  E-value=1.9e-08  Score=100.93  Aligned_cols=79  Identities=18%  Similarity=0.198  Sum_probs=67.6

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++...+.+++.|...|...+++.|+++++      +|..+.+++..+.|+|.+++|.+++++.+++||+..|.+.++..
T Consensus       111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~  184 (394)
T PRK10213        111 LLIGRACLGLALGGFWAMSASLTMRLVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG  184 (394)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            466778889999999999999999999644      36778999999999999999999999999999999999887665


Q ss_pred             HHHHH
Q 014067           82 LLSIP   86 (431)
Q Consensus        82 ~i~~i   86 (431)
                      ++..+
T Consensus       185 ~~~~l  189 (394)
T PRK10213        185 VLCIF  189 (394)
T ss_pred             HHHHH
Confidence            55443

>PRK10504 putative transporter; Provisional

Probab=99.11  E-value=3.7e-08  Score=101.06  Aligned_cols=84  Identities=13%  Similarity=0.123  Sum_probs=69.5

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++.++.++|.|...|...+.+.|.++++      ++..+++++..+.++|..++|.+++++.++.||++.|.+.....
T Consensus       101 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~  174 (471)
T PRK10504        101 LLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVG  174 (471)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHH
Confidence            456778899999999999999999988533      35678899999999999999999999999999999999988776


Q ss_pred             HHHHHHHHhc
Q 014067           82 LLSIPIFLLG   91 (431)
Q Consensus        82 ~i~~iif~~~   91 (431)
                      .++.++....
T Consensus       175 ~l~~~~~~~~  184 (471)
T PRK10504        175 IIGAIATLML  184 (471)
T ss_pred             HHHHHHHHHh
Confidence            6666554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.10  E-value=1.9e-08  Score=100.01  Aligned_cols=80  Identities=21%  Similarity=0.153  Sum_probs=63.2

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++++++.++|.|.. ++..+..+++++++      +|.++.+++..+.++|.++++++++++.+++||+..|.+.++..
T Consensus        82 l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~  154 (368)
T TIGR00903        82 LLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVA  154 (368)
T ss_pred             HHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            466788889999864 45555567887643      46788999999999999999999999999999999999877765


Q ss_pred             HHHHHHH
Q 014067           82 LLSIPIF   88 (431)
Q Consensus        82 ~i~~iif   88 (431)
                      ++..++.
T Consensus       155 ~~~~~~~  161 (368)
T TIGR00903       155 AAGIILV  161 (368)
T ss_pred             HHHHHHH
Confidence            5554433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.10  E-value=2.1e-08  Score=101.65  Aligned_cols=112  Identities=12%  Similarity=0.179  Sum_probs=77.4

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 014067          237 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT  316 (431)
Q Consensus       237 l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s  316 (431)
                      +..+..+..++..|+..++.    +|.       ...+-+.+|.++.+++++...+..                    .+
T Consensus       262 ~~~~~~i~~ii~~~~~~~l~----~r~-------g~~~~~~~~~~~~~~~~~~~~~~~--------------------~~  310 (437)
T TIGR00792       262 MGSIAIVAGLIGVLLFPRLV----KKF-------GRKILFAGGILLMVLGYLIFFFAG--------------------SN  310 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHh-------CcHHHHHHHHHHHHHHHHHHHHcc--------------------hh
Confidence            34455566666667766654    332       222335667777777666554421                    13


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhcccC-------chhhhHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 014067          317 FLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSIVNNI  379 (431)
Q Consensus       317 ~~wli~~~~l~~igE~~~~~~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~  379 (431)
                      .++++...++.+++.....+...+++.+.+|       ++.+|.++|++.+...+|..+++.+.+.+...
T Consensus       311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~  380 (437)
T TIGR00792       311 LPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI  380 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566788889998888888888888765       56789999999999999999999888877543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.09  E-value=3.8e-09  Score=106.79  Aligned_cols=140  Identities=13%  Similarity=0.087  Sum_probs=93.5

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +.+.+++.+..++..++.+++.+++.+           .+.+.++.++.+++++..++.                     
T Consensus       265 g~~~~~~~~~~~~~~~~~g~l~dr~g~-----------~~~~~~~~~l~~~~~~l~~~~---------------------  312 (420)
T PRK09528        265 GYLNSFQVFLEALIMFFAPFIINRIGA-----------KNALLLAGTIMAVRIIGSGFA---------------------  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCc-----------chhhHHHHHHHHHHHHHHHhc---------------------
Confidence            345566666666777777665533322           233666677777766665543                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHH-HHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL-SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  393 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~  393 (431)
                      .++++++...++.+++.....+...+++.+..|++.++...+. +++...+|..+++.+.+.+.+..      +|     
T Consensus       313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G~-----  381 (420)
T PRK09528        313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------GF-----  381 (420)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------Cc-----
Confidence            2456677778888888877777888999999999999987655 66777889988888887765321      12     


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067          394 LNHYHLERFYWLMCILGGLNFLHFLFWAAR  423 (431)
Q Consensus       394 ~n~~~l~~~f~~la~l~~v~~i~~~~~~~~  423 (431)
                            ...|..++++.++..++..+..|+
T Consensus       382 ------~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        382 ------QGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHhcC
Confidence                  234677777776666655555443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.09  E-value=6.7e-09  Score=102.89  Aligned_cols=79  Identities=23%  Similarity=0.293  Sum_probs=63.2

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc--------cccCchhH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQWG   73 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~--------~~~g~~~~   73 (431)
                      +++++.+.++|.|...+...+++.|.++++      +|....++...+.++|.++++.+.+.+.        +.++|++.
T Consensus        99 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~  172 (394)
T TIGR00883        99 LLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIP  172 (394)
T ss_pred             HHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHH
Confidence            456677888999999999999999998754      3567888889999999999998876653        35799999


Q ss_pred             HHHHHHHHHHHHH
Q 014067           74 FGISTATILLSIP   86 (431)
Q Consensus        74 F~i~~i~~~i~~i   86 (431)
                      |.+.++..+++.+
T Consensus       173 ~~~~~~~~~~~~~  185 (394)
T TIGR00883       173 FLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            9887776665544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.07  E-value=1.5e-08  Score=102.45  Aligned_cols=75  Identities=21%  Similarity=0.367  Sum_probs=63.5

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.++|.|...+...++..|.++++      +|.++.+++..+.++|.++++.+.+++.+.+||+..|.+.++..
T Consensus       109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~  182 (426)
T PRK12307        109 LTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPV  182 (426)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence            466778899999999999999999998754      35668888899999999999999999999999999998865443


Q ss_pred             H
Q 014067           82 L   82 (431)
Q Consensus        82 ~   82 (431)
                      +
T Consensus       183 ~  183 (426)
T PRK12307        183 L  183 (426)
T ss_pred             H
Confidence            3

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.07  E-value=4.6e-08  Score=98.19  Aligned_cols=76  Identities=9%  Similarity=-0.015  Sum_probs=62.8

Q ss_pred             HHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHHH
Q 014067            4 AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL   83 (431)
Q Consensus         4 ~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~i   83 (431)
                      +.+.+.++|.|++.|...+++.|.++++      +|.++.+++....++|.++||.++|++.+. .|...|.+.+.+.++
T Consensus        93 ~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~  165 (393)
T PRK11195         93 LAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLL  165 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            4567889999999999999999999754      467789999999999999999999999874 578787777666555


Q ss_pred             HHH
Q 014067           84 SIP   86 (431)
Q Consensus        84 ~~i   86 (431)
                      +.+
T Consensus       166 ~~~  168 (393)
T PRK11195        166 AAL  168 (393)
T ss_pred             HHH
Confidence            543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.07  E-value=2.9e-08  Score=100.84  Aligned_cols=77  Identities=23%  Similarity=0.372  Sum_probs=61.7

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc--------cccCchhH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQWG   73 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~--------~~~g~~~~   73 (431)
                      +++.+.+.++|.|+..|...++++|.++++      +|..+.++.+.+.+.|.++++.+...+.        .++||+..
T Consensus       127 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~  200 (432)
T PRK10406        127 LLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIP  200 (432)
T ss_pred             HHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHH
Confidence            456778899999999999999999998754      3556788889999999998887766554        25899999


Q ss_pred             HHHHHHHHHHH
Q 014067           74 FGISTATILLS   84 (431)
Q Consensus        74 F~i~~i~~~i~   84 (431)
                      |.+.++..++.
T Consensus       201 F~i~~~~~ll~  211 (432)
T PRK10406        201 FALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHH
Confidence            99877765544

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.06  E-value=1.4e-08  Score=103.36  Aligned_cols=302  Identities=16%  Similarity=0.181  Sum_probs=183.3

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc-cCchhHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGISTAT   80 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i~~i~   80 (431)
                      +.+.+++-+++.|...|++..+.+++.+++   |   |..+.++.+.+..+|.+++..++|++.+. .||+..|.+.++.
T Consensus       131 ~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~---E---rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~  204 (466)
T KOG2532|consen  131 LLVLRFLQGLGQGVLFPAIGSILAKWAPPN---E---RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIV  204 (466)
T ss_pred             hHHHHHHhHHHHhHHHhhhhceeeeECCHH---H---HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHH
Confidence            356788899999999999999999999855   2   67789999999999999999999999998 9999999999998


Q ss_pred             HHHHHHHHHhcCcceeecCCCCCchhH--HHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCC
Q 014067           81 ILLSIPIFLLGSPFYRNKIPTGSPLTT--IFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQK  158 (431)
Q Consensus        81 ~~i~~iif~~~~~~~~~~~p~~~~~~~--~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~  158 (431)
                      .++..+++...   |.+ .|+++|...  ..+.+..   .+. .              .+.                   
T Consensus       205 g~i~~~~w~~~---~~d-~P~~h~~is~~El~~I~~---~k~-~--------------~~~-------------------  243 (466)
T KOG2532|consen  205 GLIWFILWFLF---YSD-SPSKHPNISEKELKYIEK---GKS-E--------------AHV-------------------  243 (466)
T ss_pred             HHHHHHHHHHH---hcC-CcccCCCCCHHHHHHHHh---ccc-c--------------ccc-------------------
Confidence            88877766543   323 454444321  1111100   000 0              000                   


Q ss_pred             CchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHH-------HHhhcccchHHHHHHHhccCCCCcc
Q 014067          159 PTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLN-------CCLAQLSTFSVQQAATMNTKLGSLK  231 (431)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~-------~~~~Q~~t~~~~~~~~~~~~~gg~~  231 (431)
                                  +.+...||           |++++-.+++...+..+       ....+++       ..++ ++.++.
T Consensus       244 ------------~~~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~P-------tY~~-~VL~f~  292 (466)
T KOG2532|consen  244 ------------KKKPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLP-------TYLK-EVLGFD  292 (466)
T ss_pred             ------------CCCCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHH-HHhCCC
Confidence                        00011233           33333333333222211       1112222       2222 112222


Q ss_pred             c-CCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHH--HHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 014067          232 V-PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTG--LILSIVAMAVAALVEIKRKRVAVNSGLVN  308 (431)
Q Consensus       232 i-p~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G--~~l~~l~~~~~~~~~~~~~~~~~~~g~~~  308 (431)
                      + ..+++.+++.+...+...+.+.+-+++.+| ...   .+..+|+.-.  +...+++++.+++..              
T Consensus       293 v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~--------------  354 (466)
T KOG2532|consen  293 VRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS--------------  354 (466)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC--------------
Confidence            2 467788899999989888999988888776 332   3455565433  333333344444331              


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhhhh--hhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCC
Q 014067          309 SSEPLPITFLWVALQYLFLGSADLFTL--AGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHT  386 (431)
Q Consensus       309 ~~~~~~~s~~wli~~~~l~~igE~~~~--~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~  386 (431)
                      ++  ..    |.  +.++++++..+..  ..|..--....-+++.+.+||+.+...+++..++|.+++.+.+ .+  +.+
T Consensus       355 ~~--~~----~~--a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~--t~~  423 (466)
T KOG2532|consen  355 DE--HR----LL--AVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN--TRE  423 (466)
T ss_pred             CC--cc----hH--HHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC--CHH
Confidence            10  01    12  2333444443332  2332222223135677899999999999999999999988753 11  112


Q ss_pred             CCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 014067          387 PWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWA  421 (431)
Q Consensus       387 ~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~  421 (431)
                      +|-           ..|++.+++.++..++|.+.+
T Consensus       424 eW~-----------~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  424 EWR-----------IVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHH-----------HHHHHHHHHHHHhchheeEee
Confidence            343           678999999999998888874

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.04  E-value=9.3e-08  Score=95.68  Aligned_cols=80  Identities=16%  Similarity=0.015  Sum_probs=62.7

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.+++.|...+...++..|.++++      ++..+.+++..+.++|.+++|.+++++.++.||+..|.+.++..
T Consensus        99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~  172 (394)
T PRK11652         99 LIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLG  172 (394)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            355667778888887777778888877543      35567788888999999999999999998899999999887766


Q ss_pred             HHHHHH
Q 014067           82 LLSIPI   87 (431)
Q Consensus        82 ~i~~ii   87 (431)
                      ++..++
T Consensus       173 ~~~~~~  178 (394)
T PRK11652        173 AGVTFS  178 (394)
T ss_pred             HHHHHH
Confidence            655443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.03  E-value=4.1e-08  Score=97.99  Aligned_cols=80  Identities=13%  Similarity=0.165  Sum_probs=65.7

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.+++.|...+...+...+.++++      +|.+.++++..+.++|..+++.+++++.+..||++.|.+.++..
T Consensus        94 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~  167 (382)
T PRK10091         94 LAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFN  167 (382)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHH
Confidence            466778889998988888888888887543      35567888889999999999999999999899999999988876


Q ss_pred             HHHHHH
Q 014067           82 LLSIPI   87 (431)
Q Consensus        82 ~i~~ii   87 (431)
                      ++..+.
T Consensus       168 ~~~~~~  173 (382)
T PRK10091        168 IAVLAS  173 (382)
T ss_pred             HHHHHH
Confidence            665543

>PRK09952 shikimate transporter; Provisional

Probab=99.03  E-value=9.8e-08  Score=97.22  Aligned_cols=76  Identities=22%  Similarity=0.280  Sum_probs=59.3

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc--------cccCchhH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQWG   73 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~--------~~~g~~~~   73 (431)
                      +++.+.+.++|.|+.-|+..+.+.+.++++      +|....+....+.++|.+++..+..++.        +++||+..
T Consensus       128 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~  201 (438)
T PRK09952        128 LVTLRAIQGFAVGGEWGGAALLAVESAPKN------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIP  201 (438)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHH
Confidence            455677899999999999999999998754      2455667778888899888877766654        35899999


Q ss_pred             HHHHHHHHHH
Q 014067           74 FGISTATILL   83 (431)
Q Consensus        74 F~i~~i~~~i   83 (431)
                      |.+.++..++
T Consensus       202 f~~~~~~~l~  211 (438)
T PRK09952        202 FLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHH
Confidence            9988776544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.01  E-value=7.2e-08  Score=96.71  Aligned_cols=78  Identities=10%  Similarity=0.277  Sum_probs=62.5

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc-CchhHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWGFGISTAT   80 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i~~i~   80 (431)
                      ++++.++.++|.|...+...+.+.++++ +      +|..+.+++..+.++|..+++.+++++.++. +|+..|.+.++.
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~  172 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP  172 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-c------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4677889999999999999999988885 2      2566888888999999999999999988875 899888765555


Q ss_pred             HHHHHH
Q 014067           81 ILLSIP   86 (431)
Q Consensus        81 ~~i~~i   86 (431)
                      .++.++
T Consensus       173 ~~~~~~  178 (393)
T PRK09705        173 AVVALF  178 (393)
T ss_pred             HHHHHH
Confidence            444433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.01  E-value=2e-08  Score=100.19  Aligned_cols=79  Identities=23%  Similarity=0.338  Sum_probs=65.1

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccC--chhHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG--WQWGFGISTA   79 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g--~~~~F~i~~i   79 (431)
                      ++++..+.++|.|...+...++..|.++++      +|..+.+++..+.++|..+++.+++.+.+..+  |+..|.+.++
T Consensus       103 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~  176 (405)
T TIGR00891       103 MFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISIL  176 (405)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            456778899999999999999999999754      36778999999999999999999999887766  9999988666


Q ss_pred             HHHHHHH
Q 014067           80 TILLSIP   86 (431)
Q Consensus        80 ~~~i~~i   86 (431)
                      ..++..+
T Consensus       177 ~~~~~~~  183 (405)
T TIGR00891       177 PIIFALW  183 (405)
T ss_pred             HHHHHHH
Confidence            5555433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.01  E-value=1.1e-07  Score=97.23  Aligned_cols=80  Identities=11%  Similarity=0.138  Sum_probs=58.6

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHH-HHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGA-LIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~-~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++.+.+.+++.|...|...+...++++++      +|..+.++++.+.++|. ++++++...+....||+..|.+.++..
T Consensus       124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~  197 (452)
T PRK11273        124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAA  197 (452)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            44556778889988898888899988643      36678899999999986 556665433433459999999988776


Q ss_pred             HHHHHHH
Q 014067           82 LLSIPIF   88 (431)
Q Consensus        82 ~i~~iif   88 (431)
                      ++..++.
T Consensus       198 ~~~~~l~  204 (452)
T PRK11273        198 ILVALFA  204 (452)
T ss_pred             HHHHHHH
Confidence            6654433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.01  E-value=6.7e-08  Score=96.40  Aligned_cols=56  Identities=11%  Similarity=0.100  Sum_probs=48.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          322 LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       322 ~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ...++.++++....|.....+.+.+|++.++...+.+++..++|..+|+.+.+.+.
T Consensus       290 ~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~  345 (381)
T PRK03633        290 PALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM  345 (381)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567788888889999999999999988888888888888999999999988775

>TIGR00898 2A0119 cation transport protein

Probab=99.00  E-value=7.3e-08  Score=99.76  Aligned_cols=79  Identities=19%  Similarity=0.261  Sum_probs=63.9

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++..++.++|.|+..+...+++.|.++++      +|..+.+++..+.++|.++++.++.++.+   |+..|.+.++..
T Consensus       183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~  253 (505)
T TIGR00898       183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPT  253 (505)
T ss_pred             HHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHH
Confidence            467788899999999999999999999754      35567777788889999999988877654   999999888877


Q ss_pred             HHHHHHHH
Q 014067           82 LLSIPIFL   89 (431)
Q Consensus        82 ~i~~iif~   89 (431)
                      ++..+..+
T Consensus       254 ~~~~~~~~  261 (505)
T TIGR00898       254 FLFFLLSW  261 (505)
T ss_pred             HHHHHHHH
Confidence            76655443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.00  E-value=9.4e-09  Score=100.48  Aligned_cols=304  Identities=13%  Similarity=0.044  Sum_probs=169.4

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhh--hhcccccCchhHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV--VWIEDNKGWQWGFGISTA   79 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~--~~l~~~~g~~~~F~i~~i   79 (431)
                      +.+-.++.+.-+|.--|.....++.+|+++      +|.+..++.-.+-|+|+.+.|+++  +++..+++|+.+|.+|++
T Consensus       120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgi  193 (448)
T COG2271         120 FAVLWVLNGWFQGMGWPPCARTITHWFSRK------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGI  193 (448)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHcCcc------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHH
Confidence            345556788888999999999999999865      267778888999999999999999  999999999999999998


Q ss_pred             HHHHH-HHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCC
Q 014067           80 TILLS-IPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQK  158 (431)
Q Consensus        80 ~~~i~-~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~  158 (431)
                      ..++. ++.+..+|.     .|+..-++++.+     .++                          |..... +      
T Consensus       194 iaiival~~~~~~rd-----~Pqs~GLP~ie~-----~~~--------------------------d~~e~~-~------  230 (448)
T COG2271         194 IAIIVALILLFLLRD-----RPQSEGLPPIEE-----YRG--------------------------DPLEIY-E------  230 (448)
T ss_pred             HHHHHHHHHHHHhCC-----CccccCCCCHHH-----hhc--------------------------Cchhhh-h------
Confidence            66654 444444432     233211111100     000                          000000 0      


Q ss_pred             CchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHh------hcccchHHHHHHHhccCCCCccc
Q 014067          159 PTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCL------AQLSTFSVQQAATMNTKLGSLKV  232 (431)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~------~Q~~t~~~~~~~~~~~~~gg~~i  232 (431)
                                  ++++..+.   +..| .-+|.+++--.+|...+.+..+|      .+....+..+..+.+..      
T Consensus       231 ------------~~~~~~~l---s~~~-i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~------  288 (448)
T COG2271         231 ------------EEKENEGL---TAWQ-IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLV------  288 (448)
T ss_pred             ------------hhccCCCc---cHHH-HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH------
Confidence                        00000000   0010 11334444333444444444443      33444555554444432      


Q ss_pred             CCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 014067          233 PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP  312 (431)
Q Consensus       233 p~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~  312 (431)
                      ...+..++-...-+....+.+|+.+++.+.+           |.-.+++++.+-++.....     ..++          
T Consensus       289 ~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr-----------R~p~~~i~~~~i~~~~~~~-----w~~~----------  342 (448)
T COG2271         289 KANWAISLFEVAGLPGTLLAGWLSDKLFKGR-----------RGPMALIFMLLITASLVLY-----WLAP----------  342 (448)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcccc-----------cchHHHHHHHHHHHHHHHH-----HcCC----------
Confidence            3444445555666777778889888886532           1222333222222111111     0110          


Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhh--hhhhcccCchhhhHHHHHHHHHHHH-HHHHhhhhhhhhccccccCCCCCCC
Q 014067          313 LPITFLWVALQYLFLGSADLFTLAGMM--EFFFTDAPLSMRSLATSLSWASLAM-GYYFSTVLVSIVNNITSTYRHTPWL  389 (431)
Q Consensus       313 ~~~s~~wli~~~~l~~igE~~~~~~~~--~~~~~~aP~~~~g~~~gl~~l~~~i-G~~l~~~l~~~~~~~~~~~~~~~w~  389 (431)
                       ..|.+  +..-++..+|-...-|..+  -.+.+.+|++..|++.|+..+..-+ |..++....+.+.+.      .+|.
T Consensus       343 -~~~~~--l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~------~gW~  413 (448)
T COG2271         343 -NGSYL--LDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT------WGWD  413 (448)
T ss_pred             -CccHH--HHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec------CCCc
Confidence             01222  2223344444444333321  2456789999999999999998888 888888877776432      2565


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014067          390 FGSNLNHYHLERFYWLMCILGGLNFLHFLFWAA  422 (431)
Q Consensus       390 ~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~  422 (431)
                                 ..|.++.+-++++.++++...+
T Consensus       414 -----------g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         414 -----------GGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             -----------chHHHHHHHHHHHHHHHHHHHh
Confidence                       3455555555666555555544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.00  E-value=1.8e-08  Score=99.19  Aligned_cols=83  Identities=12%  Similarity=0.183  Sum_probs=67.5

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh-hhhhhcccccCchhHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAV-TFVVWIEDNKGWQWGFGISTAT   80 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~-~~~~~l~~~~g~~~~F~i~~i~   80 (431)
                      +++++.+.+++.|...|...+++.|.++++      +|..++++...+.++|..+++ ++++.+.+..+|+..|.+.++.
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (379)
T TIGR00881        86 MAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGII  159 (379)
T ss_pred             HHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            456777889999999999999999999754      356678888999999999999 5777777888999999988877


Q ss_pred             HHHHHHHHHh
Q 014067           81 ILLSIPIFLL   90 (431)
Q Consensus        81 ~~i~~iif~~   90 (431)
                      .++..++.+.
T Consensus       160 ~~~~~~~~~~  169 (379)
T TIGR00881       160 AIIVSLICFL  169 (379)
T ss_pred             HHHHHHHHhe
Confidence            7665554433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.99  E-value=8.4e-08  Score=97.32  Aligned_cols=302  Identities=10%  Similarity=0.115  Sum_probs=175.5

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc----ccc---cCchhHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI----EDN---KGWQWGFG   75 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l----~~~---~g~~~~F~   75 (431)
                      ++...+..++...+.-+..+++.|..++++     +|.+..++...+.++|.++...+.+.+    .+.   .+|+..+.
T Consensus       107 ~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  107 FVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            344556788888899999999999987654     355677777778888886555555544    322   16888888


Q ss_pred             HHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcc-cccccccCCC
Q 014067           76 ISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD-EGNSNVKEKV  154 (431)
Q Consensus        76 i~~i~~~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~~~  154 (431)
                      +.++..++..++..+..|+- ++++++++                                   +..++ +.        
T Consensus       182 v~~iv~~v~~~i~~~~~ke~-~~~~~~~~-----------------------------------~~~~~~~~--------  217 (428)
T PF13347_consen  182 VLAIVGLVFFLITFFFVKER-SVEVTEQE-----------------------------------KKISLRDS--------  217 (428)
T ss_pred             HHHHHHHHHhhhhhheeeec-cccccccc-----------------------------------cccccccc--------
Confidence            77777777766665554430 00000000                                   00000 00        


Q ss_pred             CCCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHH-HhccCCCCcccC
Q 014067          155 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMNTKLGSLKVP  233 (431)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~-~~~~~~gg~~ip  233 (431)
                                             ++.  .  .++ |.   +..++....+.+....-..+...+..+ .+..+ +    -
T Consensus       218 -----------------------~~~--~--~~n-r~---~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~----~  261 (428)
T PF13347_consen  218 -----------------------LRS--L--FRN-RP---FRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G----L  261 (428)
T ss_pred             -----------------------hhh--h--ccc-ch---HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h----h
Confidence                                   000  0  011 11   122333344444444433433333322 22211 1    1


Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .+.+..+..+..++..|+..++.    +|.++       .+-+..|.++.+++.+...+..                   
T Consensus       262 ~~~~~~~~~~~~~v~~~~~~~l~----~r~gk-------~~~~~~~~~~~~~~~~~~~~~~-------------------  311 (428)
T PF13347_consen  262 ISIFMLIFFVASIVGSPLWGRLS----KRFGK-------KKVYIIGLLLAALGFLLLFFLG-------------------  311 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH----HHccc-------eeehhhhHHHHHHHHHHHHHHH-------------------
Confidence            23333444555566666665554    44322       2346678888888888776663                   


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-------hhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCC
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL-------SMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHT  386 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~-------~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~  386 (431)
                      +.+.+++.+..++.+++-....+...++..+..+.       +..|+++|++.+...+|..+++.+.+.+-...+     
T Consensus       312 ~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G-----  386 (428)
T PF13347_consen  312 PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG-----  386 (428)
T ss_pred             hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC-----
Confidence            24678888999999999999999999999988874       567999999999999999999888776654332     


Q ss_pred             CCCcCCC--CCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014067          387 PWLFGSN--LNHYHLERFYWLMCILGGLNFLHFLFWAARYKY  426 (431)
Q Consensus       387 ~w~~~~~--~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~  426 (431)
                       +. ++.  .++..+.....+.+.+..+..++-.++.++|+.
T Consensus       387 -y~-~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l  426 (428)
T PF13347_consen  387 -YD-ANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPL  426 (428)
T ss_pred             -cC-CCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence             21 221  222233333444444445554444566666664

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.99  E-value=1.1e-07  Score=101.98  Aligned_cols=81  Identities=9%  Similarity=0.039  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHH
Q 014067          276 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLAT  355 (431)
Q Consensus       276 i~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~  355 (431)
                      +.+++++.+++.+..++..                     +..+++...++.++......+....++.+..|.+.|+..+
T Consensus       628 l~~~~~lsai~~ll~~~~~---------------------s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~  686 (742)
T TIGR01299       628 LAGSMVLSCISCFFLSFGN---------------------SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAF  686 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHc---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            5677777777776665542                     2234445556777777777788889999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhc
Q 014067          356 SLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       356 gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      |+......+|..+|+.+++.+.
T Consensus       687 Gi~~~~~rlGaiigp~i~g~L~  708 (742)
T TIGR01299       687 GFLNALCKAAAVLGILIFGSFV  708 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.99  E-value=1e-07  Score=93.97  Aligned_cols=84  Identities=15%  Similarity=0.162  Sum_probs=75.0

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +.+++++.++..|.+.+-..+..+|..+++      ||.++..+.+.+..+.-.+|..++.++.|.+||+..|.+.++..
T Consensus       104 Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~  177 (394)
T COG2814         104 LLLARALAGLAHGVFWSIAAALAARLVPPG------KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLA  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHH
Confidence            568899999999999999999999999876      47889999999999999999999999999999999999888887


Q ss_pred             HHHHHHHHhc
Q 014067           82 LLSIPIFLLG   91 (431)
Q Consensus        82 ~i~~iif~~~   91 (431)
                      ++.++..+..
T Consensus       178 ll~~~~~~~~  187 (394)
T COG2814         178 LLALLLLWKL  187 (394)
T ss_pred             HHHHHHHHHh
Confidence            7777655443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.98  E-value=6.6e-08  Score=109.99  Aligned_cols=263  Identities=11%  Similarity=0.030  Sum_probs=146.2

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc--------c-Cchh
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN--------K-GWQW   72 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~--------~-g~~~   72 (431)
                      +++++++.+++.|.+.|...++++|.++++      +|..+++++..+.++|.++|+.+++++.+.        + +|.+
T Consensus       106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~  179 (1146)
T PRK08633        106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIA  179 (1146)
T ss_pred             HHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchH
Confidence            466777889999999999999999999764      367789999999999999999999998765        2 2333


Q ss_pred             HHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccC
Q 014067           73 GFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKE  152 (431)
Q Consensus        73 ~F~i~~i~~~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~  152 (431)
                      .+.+.++...+..+++.+..+.    .|..++...          ++                   ..   ..       
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----------~~-------------------~~---~~-------  216 (1146)
T PRK08633        180 PAGLVLLAVAVLGLIFAYRLPK----VPAAAPEVF----------DK-------------------KK---YL-------  216 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcC----CCCCCcccc----------cc-------------------cc---cc-------
Confidence            4333333333222222221111    111100000          00                   00   00       


Q ss_pred             CCCCCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHH---hHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCC
Q 014067          153 KVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVV---KIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS  229 (431)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg  229 (431)
                                              ..    .+..+..+.++   .+..+.+...+++.......+.+....   ...+| 
T Consensus       217 ------------------------~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g-  264 (1146)
T PRK08633        217 ------------------------FP----KLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYA---KEVLG-  264 (1146)
T ss_pred             ------------------------cH----HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHhC-
Confidence                                    00    00000011111   111122222233332222222222111   11112 


Q ss_pred             ccc--CCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 014067          230 LKV--PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV  307 (431)
Q Consensus       230 ~~i--p~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~  307 (431)
                      ...  ..+++.+...+..++..++.++    +.+|.       ...+.+.+|.++.+++.+..++.              
T Consensus       265 ~s~~~~~g~~~~~~~ig~~~g~~~~g~----l~~r~-------~~~~~~~~~~~~~~~~~~~~~~~--------------  319 (1146)
T PRK08633        265 LDNTFQVQYLLAASAIGIGIGSLLAGR----LSGRH-------IELGLVPLGALGLALSLFLLPTA--------------  319 (1146)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHH----HhCCc-------eEccchhHHHHHHHHHHHHHHHh--------------
Confidence            100  1233344444444444444444    33432       22234556666666666555443              


Q ss_pred             CCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          308 NSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       308 ~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                             .+.++++...++.+++..+..+....++.+.+|++.||.++|+.++...+|..+++.++.++.
T Consensus       320 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        320 -------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             -------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                   245667777889999999988889999999999999999999999999999887777766553

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.98  E-value=2.6e-07  Score=94.30  Aligned_cols=295  Identities=12%  Similarity=0.031  Sum_probs=162.8

Q ss_pred             HHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc--ccc-------------cCch
Q 014067            7 YIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI--EDN-------------KGWQ   71 (431)
Q Consensus         7 ~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l--~~~-------------~g~~   71 (431)
                      .+.-++.....+...++++|..++++.    +++.+++|+.+..|+|+++|+.++++.  .+.             .+++
T Consensus       122 ~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  197 (477)
T TIGR01301       122 WILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLK  197 (477)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHH
Confidence            344457777888889999999987642    345789999999999999999999875  211             1678


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCccccccccc
Q 014067           72 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK  151 (431)
Q Consensus        72 ~~F~i~~i~~~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~  151 (431)
                      ..|.+.++.++++.++-.+.-|+.+..++++.+..+                            ....++.+.+ .    
T Consensus       198 ~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~----------------------------~~~~~~~~~~-~----  244 (477)
T TIGR01301       198 SCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE----------------------------AAPPSKHGEE-A----  244 (477)
T ss_pred             HHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh----------------------------cccccccchh-h----
Confidence            899999999998877666544433210011000000                            0000000000 0    


Q ss_pred             CCCCCCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHH-hccCCC-C
Q 014067          152 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT-MNTKLG-S  229 (431)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~-~~~~~g-g  229 (431)
                                  .+.         ..++..    .+--|.+.+++..-++.-+=|..+-+..|.++-+.-. -+.+-. .
T Consensus       245 ------------~~~---------~i~~~~----~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~  299 (477)
T TIGR01301       245 ------------FFG---------ELFGAF----KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAK  299 (477)
T ss_pred             ------------hHH---------HHHHHH----HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhH
Confidence                        000         000000    0111333344444444444445555555555433210 000000 0


Q ss_pred             cc--cC-CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhh-HHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 014067          230 LK--VP-PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRI-GTGLILSIVAMAVAALVEIKRKRVAVNSG  305 (431)
Q Consensus       230 ~~--ip-~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki-~~G~~l~~l~~~~~~~~~~~~~~~~~~~g  305 (431)
                      ++  +. ..+-...|.+...    ++..++.++.++.       ...++. .++.++.++|++...++..    .+++.+
T Consensus       300 y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~-------g~~k~~~~~s~~~~~~~l~~~~~i~~----~~~~~~  364 (477)
T TIGR01301       300 YDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGW-------GAGKRLWGIVNIILAICLAATVLVTY----VAKNSR  364 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHHHHh----hhhccc
Confidence            00  00 0112223333322    3444444455543       222333 6888899999888877642    111100


Q ss_pred             CCC--CCC-Ccchh-HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCc--hhhhHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 014067          306 LVN--SSE-PLPIT-FLWVALQYLFLGSADLFTLAGMMEFFFTDAPL--SMRSLATSLSWASLAMGYYFSTVLVSIVNN  378 (431)
Q Consensus       306 ~~~--~~~-~~~~s-~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~--~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  378 (431)
                      ..+  +.. ..+.. .+..+..+.+.|++-......=++++++..|+  +-.|.+||+.++...+...+.++..+.+.+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~  443 (477)
T TIGR01301       365 YYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQ  443 (477)
T ss_pred             cccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            000  000 01122 35677788999999999988889999999995  556999999999999999999887776543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK03699 putative transporter; Provisional

Probab=98.96  E-value=1.9e-07  Score=93.69  Aligned_cols=81  Identities=10%  Similarity=0.148  Sum_probs=63.2

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc-cccCchhHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-DNKGWQWGFGISTAT   80 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~-~~~g~~~~F~i~~i~   80 (431)
                      +++++.+.+++.|...+...+.+.+.++++      +|....+..+...++|+.++|.+.+++. ++.||+..|.+.++.
T Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~  171 (394)
T PRK03699         98 FSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLV  171 (394)
T ss_pred             HHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            345667888899999999999999998543      3456677778888999999999988764 467999999988877


Q ss_pred             HHHHHHHH
Q 014067           81 ILLSIPIF   88 (431)
Q Consensus        81 ~~i~~iif   88 (431)
                      .++..++.
T Consensus       172 ~~~~~~~~  179 (394)
T PRK03699        172 YVAIFILT  179 (394)
T ss_pred             HHHHHHHH
Confidence            66655443

>PRK11043 putative transporter; Provisional

Probab=98.96  E-value=1.6e-07  Score=94.24  Aligned_cols=82  Identities=21%  Similarity=0.250  Sum_probs=65.4

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.++|.+...+...++..|.++++      ++.+.++......++|..++|.+++++.+++||+..|.+.++..
T Consensus        97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~  170 (401)
T PRK11043         97 LLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAIT  170 (401)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            345666777888877788888899988654      34567888888899999999999999999999999999888777


Q ss_pred             HHHHHHHH
Q 014067           82 LLSIPIFL   89 (431)
Q Consensus        82 ~i~~iif~   89 (431)
                      ++..+..+
T Consensus       171 ~~~~~~~~  178 (401)
T PRK11043        171 LLLILPTL  178 (401)
T ss_pred             HHHHHHHH
Confidence            76655443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.95  E-value=3e-07  Score=91.93  Aligned_cols=80  Identities=16%  Similarity=0.111  Sum_probs=66.1

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL   82 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~   82 (431)
                      +++..+.+++.+...+...+++.|.++++      +|.+++++++...++|..++|.+++++.+..||+..|.+.++..+
T Consensus        95 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~  168 (392)
T PRK10473         95 LAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGI  168 (392)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHH
Confidence            45667788888888888889999988644      367788999999999999999999998888999999999887777


Q ss_pred             HHHHHH
Q 014067           83 LSIPIF   88 (431)
Q Consensus        83 i~~iif   88 (431)
                      +..++.
T Consensus       169 i~~~~~  174 (392)
T PRK10473        169 LVLLLS  174 (392)
T ss_pred             HHHHHH
Confidence            665543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.94  E-value=6e-08  Score=99.58  Aligned_cols=81  Identities=11%  Similarity=-0.035  Sum_probs=63.6

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc---CchhHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK---GWQWGFGIST   78 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~---g~~~~F~i~~   78 (431)
                      +++.+.+.++|.|..-|...+.++++++++      +|..+++++-.+.++|.++++.+..++.+..   +|+..|.+.+
T Consensus       125 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g  198 (467)
T PRK09556        125 MIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPS  198 (467)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHH
Confidence            455667788999999999999999999865      3566788888999999999999888776543   6888898877


Q ss_pred             HHHHHHHHHH
Q 014067           79 ATILLSIPIF   88 (431)
Q Consensus        79 i~~~i~~iif   88 (431)
                      +..++..++.
T Consensus       199 ~~~~~~~i~~  208 (467)
T PRK09556        199 IIALIIGFIG  208 (467)
T ss_pred             HHHHHHHHHH
Confidence            7666554433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.94  E-value=2.1e-07  Score=96.25  Aligned_cols=76  Identities=21%  Similarity=0.233  Sum_probs=58.4

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc--------cccCchhH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQWG   73 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~--------~~~g~~~~   73 (431)
                      +.+.+++.++|.|+..|+..+++++.++++      +|..+.++...+.++|.++|+.+...+.        .++||++.
T Consensus       121 l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~  194 (490)
T PRK10642        121 LLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIP  194 (490)
T ss_pred             HHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHH
Confidence            466778899999999999999999999755      2455677778888888888876654432        26899999


Q ss_pred             HHHHHHHHHH
Q 014067           74 FGISTATILL   83 (431)
Q Consensus        74 F~i~~i~~~i   83 (431)
                      |.+.++..++
T Consensus       195 f~i~~~~~l~  204 (490)
T PRK10642        195 FFIALPLGII  204 (490)
T ss_pred             HHHHHHHHHH
Confidence            9987654443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.92  E-value=3.3e-07  Score=92.18  Aligned_cols=76  Identities=14%  Similarity=0.195  Sum_probs=61.6

Q ss_pred             HHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc-cCchhHHHHHHHHHHHHH
Q 014067            7 YIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGISTATILLSI   85 (431)
Q Consensus         7 ~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i~~i~~~i~~   85 (431)
                      .+.++..+...|...++..|..+++      +|.++.++..++.++|.++++.+.+++.+. .||+..|.+.++..++..
T Consensus       102 ~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~  175 (402)
T PRK11902        102 VLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGA  175 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence            3456778888999999999998654      356788888899999999999999988875 599999999888776655


Q ss_pred             HHH
Q 014067           86 PIF   88 (431)
Q Consensus        86 iif   88 (431)
                      +..
T Consensus       176 l~~  178 (402)
T PRK11902        176 LTT  178 (402)
T ss_pred             HHH
Confidence            533

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.91  E-value=1.8e-07  Score=96.61  Aligned_cols=75  Identities=24%  Similarity=0.352  Sum_probs=63.0

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.+++.++..+...+.+.|.++++      +|...+++++.+.++|.++++.+.+++.+++||+..|.+.++..
T Consensus       111 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~  184 (496)
T PRK03893        111 LFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI  184 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            456777888999999999999999999643      35678889999999999999999999999999999998755443


Q ss_pred             H
Q 014067           82 L   82 (431)
Q Consensus        82 ~   82 (431)
                      +
T Consensus       185 ~  185 (496)
T PRK03893        185 I  185 (496)
T ss_pred             H
Confidence            3

>PRK15075 citrate-proton symporter; Provisional

Probab=98.91  E-value=2.4e-07  Score=94.15  Aligned_cols=72  Identities=14%  Similarity=0.183  Sum_probs=56.8

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc--------ccccCchhH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI--------EDNKGWQWG   73 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l--------~~~~g~~~~   73 (431)
                      +++++.+.++|.|..-|+..++.+|.++++      +|.+..+++..+.|+|..+++.+++.+        .+++||+..
T Consensus       120 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~  193 (434)
T PRK15075        120 VLLGRLLQGFSAGVELGGVSVYLAEIATPG------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIP  193 (434)
T ss_pred             HHHHHHHhhccccccHHHHHHHHHhhCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHH
Confidence            356778889999999999999999999755      356778887888888887777776665        256899999


Q ss_pred             HHHHHH
Q 014067           74 FGISTA   79 (431)
Q Consensus        74 F~i~~i   79 (431)
                      |.+..+
T Consensus       194 f~~~~~  199 (434)
T PRK15075        194 FLIGCL  199 (434)
T ss_pred             HHHHHH
Confidence            987544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.90  E-value=1.9e-07  Score=95.01  Aligned_cols=81  Identities=10%  Similarity=0.107  Sum_probs=63.8

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh-cccccCchhHHHHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVW-IEDNKGWQWGFGISTATI   81 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~-l~~~~g~~~~F~i~~i~~   81 (431)
                      ++.+.+.+++.|...|.....+.|.++++      +|..++++++.+.++|..+++.+.+. +.++.+|+.+|.+.++..
T Consensus       122 ~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~  195 (438)
T TIGR00712       122 FVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICA  195 (438)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            34566778888888888889999988754      36778999999999999998887765 444579999999988887


Q ss_pred             HHHHHHHH
Q 014067           82 LLSIPIFL   89 (431)
Q Consensus        82 ~i~~iif~   89 (431)
                      ++..++.+
T Consensus       196 ~i~~~~~~  203 (438)
T TIGR00712       196 IIVALFAF  203 (438)
T ss_pred             HHHHHHHH
Confidence            77654443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.1e-08  Score=101.00  Aligned_cols=83  Identities=14%  Similarity=0.252  Sum_probs=73.3

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccC-chhHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTAT   80 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g-~~~~F~i~~i~   80 (431)
                      +.+.+.++++|++.+.|..+++++|.|+++      +|.+.|.||||++++|+.+|.+.++++.+.-+ |+++|...++.
T Consensus       124 ~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl  197 (493)
T KOG1330|consen  124 VLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVL  197 (493)
T ss_pred             HHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHH
Confidence            456788999999999999999999999876      58899999999999999999999999988766 99999999998


Q ss_pred             HHHHHHHHHh
Q 014067           81 ILLSIPIFLL   90 (431)
Q Consensus        81 ~~i~~iif~~   90 (431)
                      +++..++..+
T Consensus       198 ~vi~~~L~~~  207 (493)
T KOG1330|consen  198 GVIVGLLVFL  207 (493)
T ss_pred             HHHHHHHHHh
Confidence            8887664433

>TIGR00897 2A0118 polyol permease family

Probab=98.87  E-value=5.6e-07  Score=90.48  Aligned_cols=70  Identities=11%  Similarity=-0.029  Sum_probs=50.5

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHH-HHHhhhhhhcccccCchhHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGA-LIAVTFVVWIEDNKGWQWGFGIST   78 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~-~i~~~~~~~l~~~~g~~~~F~i~~   78 (431)
                      ++...+.++|.+..-+...+.+.+.++++      +|.++.+++..+.++|. ++++.+++++.+++||+..+....
T Consensus       109 ~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~  179 (402)
T TIGR00897       109 LLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSAL  179 (402)
T ss_pred             HHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            34455567777776666677777776543      36778899999999996 689999999988889665544433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.87  E-value=9.9e-07  Score=89.14  Aligned_cols=81  Identities=11%  Similarity=0.051  Sum_probs=65.4

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++++++.++|.+..-+...+...|.++++      ++.+..+++..+.++|..+||.+++++.++.||++.|.+.++..
T Consensus       107 l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~  180 (413)
T PRK15403        107 FLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMG  180 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            456778888888876666667788888644      35567899999999999999999999998889999999988877


Q ss_pred             HHHHHHH
Q 014067           82 LLSIPIF   88 (431)
Q Consensus        82 ~i~~iif   88 (431)
                      +++.+..
T Consensus       181 ~i~~~~~  187 (413)
T PRK15403        181 LIAFVGL  187 (413)
T ss_pred             HHHHHHH
Confidence            7766543

>PRK09848 glucuronide transporter; Provisional

Probab=98.86  E-value=5.6e-07  Score=91.83  Aligned_cols=89  Identities=10%  Similarity=0.032  Sum_probs=68.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCch--
Q 014067          272 HLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS--  349 (431)
Q Consensus       272 ~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~--  349 (431)
                      ..+.+.+|.++.+++.+...+..                   ..+.++++...++.++|+.+..+...++..+.+|++  
T Consensus       293 ~~~~~~~g~~~~~i~~~~~~~~~-------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~  353 (448)
T PRK09848        293 KKNTFLIGALLGTCGYLLFFWVS-------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY  353 (448)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            33557778887777766554321                   235566667788999999999999999999988864  


Q ss_pred             -----hhhHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 014067          350 -----MRSLATSLSWASLAMGYYFSTVLVSIVNNI  379 (431)
Q Consensus       350 -----~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~  379 (431)
                           .+|.++|++.+...+|..+|+.+.+.+-..
T Consensus       354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 569999999999999999998887766433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.84  E-value=2.7e-07  Score=92.51  Aligned_cols=82  Identities=11%  Similarity=0.085  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHH
Q 014067          275 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA  354 (431)
Q Consensus       275 ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~  354 (431)
                      -+.+|.++.++++......                     .+++++++..++.+++.........+...+..|++.+++.
T Consensus       286 ~l~~~~~l~~l~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~  344 (396)
T TIGR00882       286 ALLIAGTIMSVRIIGSSFA---------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATI  344 (396)
T ss_pred             hHHHHHHHHHHHHHHHHhc---------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEe
Confidence            3566777666655543332                     3566777778889988877666777788888899998887


Q ss_pred             HHH-HHHHHHHHHHHhhhhhhhhc
Q 014067          355 TSL-SWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       355 ~gl-~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+. +.....+|+.+++.+.+.+.
T Consensus       345 ~~~~~~~~~~lg~~~~~~l~G~l~  368 (396)
T TIGR00882       345 YLIGFQFAKQLAMIFLSTLAGNMY  368 (396)
T ss_pred             ehHHHHHHHHHHHHHHHHhHHHHH
Confidence            665 56778889998888877765

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.84  E-value=3.3e-07  Score=92.60  Aligned_cols=82  Identities=13%  Similarity=0.185  Sum_probs=66.9

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc------ccCchhHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED------NKGWQWGFG   75 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~------~~g~~~~F~   75 (431)
                      ++++..+.++|.|..-|...+...+.++++      +|....+++..+.++|..+++.+++++.+      ..||++.|.
T Consensus        99 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~  172 (412)
T TIGR02332        99 LYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFL  172 (412)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHH
Confidence            567788999999999999999999999743      35678888899999999999999998753      469999999


Q ss_pred             HHHHHHHHHHHHHH
Q 014067           76 ISTATILLSIPIFL   89 (431)
Q Consensus        76 i~~i~~~i~~iif~   89 (431)
                      +.++..++..++..
T Consensus       173 ~~~~~~l~~~~~~~  186 (412)
T TIGR02332       173 LEGFPSVILGVMTW  186 (412)
T ss_pred             HHHHHHHHHHHHHh
Confidence            98777766554443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.81  E-value=7.1e-07  Score=90.38  Aligned_cols=149  Identities=9%  Similarity=0.078  Sum_probs=95.9

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 014067          237 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT  316 (431)
Q Consensus       237 l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s  316 (431)
                      ..+++.+..++..++.+++.    +|.       +..+-+.++.++.++++........                 ...+
T Consensus       256 ~~~~~~i~~i~~~~~~g~l~----dr~-------g~r~~l~~~~~~~~v~~~l~~~~~~-----------------~~~~  307 (418)
T TIGR00889       256 WMSLSQFSEIFFILTIPFFL----KRF-------GIKKVMLLSLVAWALRFGFFAYGDP-----------------EYFG  307 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHh-------CcHHHHHHHHHHHHHHHHHHHHcCc-----------------chhh
Confidence            34555555555555555544    442       2223466777777666655444210                 0112


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHH-HHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCC
Q 014067          317 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW-ASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  395 (431)
Q Consensus       317 ~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n  395 (431)
                      .+.++...++.++++.+..+....++.+..|++.||.++|+.+ ...++|+.+|+.+.+.+.+.++.         ++. 
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~---------~~~-  377 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA---------YGT-  377 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc---------ccC-
Confidence            3345566789999999999999999999999999999999997 56789999999998877533210         000 


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 014067          396 HYHLERFYWLMCILGGLNFLHFLFWAARY  424 (431)
Q Consensus       396 ~~~l~~~f~~la~l~~v~~i~~~~~~~~~  424 (431)
                       ...+.-|...+++.++..+++.++.|+-
T Consensus       378 -~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       378 -FDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             -CchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence             0123446667777777777666666543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00896 CynX cyanate transporter

Probab=98.78  E-value=5.2e-07  Score=88.94  Aligned_cols=77  Identities=22%  Similarity=0.344  Sum_probs=59.4

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc--CchhHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK--GWQWGFGISTA   79 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~--g~~~~F~i~~i   79 (431)
                      ++++..+.++|.|...+...+...|.+++       +|.++.+++..+.++|..+++.+++.+.++.  +|+..|.+.++
T Consensus        90 l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~  162 (355)
T TIGR00896        90 LFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWAL  162 (355)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            34566778889888888888888877742       2566888999999999999999999887764  38999887766


Q ss_pred             HHHHHH
Q 014067           80 TILLSI   85 (431)
Q Consensus        80 ~~~i~~   85 (431)
                      ..++..
T Consensus       163 ~~~~~~  168 (355)
T TIGR00896       163 PALLAL  168 (355)
T ss_pred             HHHHHH
Confidence            554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09669 putative symporter YagG; Provisional

Probab=98.72  E-value=2.5e-06  Score=87.02  Aligned_cols=65  Identities=9%  Similarity=0.059  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccC-------chhhhHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT  380 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~  380 (431)
                      +.+.++...++.++++....+...+++.+.++       ++..|...|++.+...+|..+|+.+++.+-...
T Consensus       318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44555666789999999999999999998886       455788899999988888888888877665433

>TIGR00788 fbt folate/biopterin transporter

Probab=98.70  E-value=3.4e-07  Score=94.08  Aligned_cols=81  Identities=15%  Similarity=0.071  Sum_probs=67.1

Q ss_pred             HHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHHHH
Q 014067            5 GLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLS   84 (431)
Q Consensus         5 ~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~i~   84 (431)
                      .+.+++++.+.......++..|+.+ +++   +......++.|.+.++|.++|+.++|++.+.++|+..|.+.++..++.
T Consensus       126 ~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~  201 (468)
T TIGR00788       126 FIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ  201 (468)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence            5677889999999999999999998 332   134456778899999999999999999999999999999998888877


Q ss_pred             HHHHH
Q 014067           85 IPIFL   89 (431)
Q Consensus        85 ~iif~   89 (431)
                      .+...
T Consensus       202 ~~~~~  206 (468)
T TIGR00788       202 LFVSN  206 (468)
T ss_pred             HHHHH
Confidence            44333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.68  E-value=8.4e-06  Score=84.53  Aligned_cols=79  Identities=18%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc---------------
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---------------   66 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~---------------   66 (431)
                      +++++.+.++|.|+.-|....++.+.++++      +|..+.++++.+.++|.++++.++.++..               
T Consensus       118 ~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  191 (502)
T TIGR00887       118 LCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASC  191 (502)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            457888999999999999999999999865      36778889999999999999888765421               


Q ss_pred             --------ccCchhHHHHHHHHHHHHHH
Q 014067           67 --------NKGWQWGFGISTATILLSIP   86 (431)
Q Consensus        67 --------~~g~~~~F~i~~i~~~i~~i   86 (431)
                              +++|+..|.+.++..++..+
T Consensus       192 ~~~~~~~~~~~WR~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       192 TGSCVPAVDYMWRILIGFGAVPALLALY  219 (502)
T ss_pred             cccccchhcccHHHHHHHHHHHHHHHHH
Confidence                    24899999887776665444

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01272 gluP glucose/galactose transporter

Probab=98.67  E-value=6e-06  Score=80.14  Aligned_cols=83  Identities=12%  Similarity=0.054  Sum_probs=65.5

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc--------------
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN--------------   67 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~--------------   67 (431)
                      +.+++.+++.|.+..++..++++++.-++++      +.+..|+.-.+..+|+++||++++.+..+              
T Consensus        13 ~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~   86 (310)
T TIGR01272        13 FLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANA   86 (310)
T ss_pred             HHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhH
Confidence            5788999999999999999999999986553      45568888889999999999999977631              


Q ss_pred             --cCchhHHHHHHHHHHHHHHHHHh
Q 014067           68 --KGWQWGFGISTATILLSIPIFLL   90 (431)
Q Consensus        68 --~g~~~~F~i~~i~~~i~~iif~~   90 (431)
                        ..|++.|.+.++..++..+++.+
T Consensus        87 ~~~~~~~~yl~ia~~~~~~~i~~~~  111 (310)
T TIGR01272        87 EAAKVHTPYLLLAGALAVLAIIFAF  111 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              46889998666665555554443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.67  E-value=2e-06  Score=88.59  Aligned_cols=80  Identities=6%  Similarity=0.024  Sum_probs=55.9

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc---------ccCchhH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---------NKGWQWG   73 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~---------~~g~~~~   73 (431)
                      ++..++.++|.+..-+ ....+++.++++      +|..+.++.+...|+|+.+++.+.+.+..         ..||+..
T Consensus       128 ~~~r~l~G~~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~  200 (476)
T PLN00028        128 IAVRFFIGFSLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIA  200 (476)
T ss_pred             HHHHHHHHHHHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence            4556677777776543 455678888644      36678888888888888888776665422         2589999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 014067           74 FGISTATILLSIPIFL   89 (431)
Q Consensus        74 F~i~~i~~~i~~iif~   89 (431)
                      |.+.++..++..+..+
T Consensus       201 f~i~g~l~l~~~l~~~  216 (476)
T PLN00028        201 FFVPGLLHIIMGILVL  216 (476)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998887776654443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.66  E-value=4.8e-06  Score=83.25  Aligned_cols=55  Identities=9%  Similarity=0.011  Sum_probs=42.2

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCc-hhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          323 QYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       323 ~~~l~~igE~~~~~~~~~~~~~~aP~-~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ..++.+++.-+..+.......+.+++ +.+|..+++.....++|..+++.+.+.+.
T Consensus       309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~  364 (390)
T TIGR02718       309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT  364 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555666667777777776 89999999999999999999999988775

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.65  E-value=7e-07  Score=94.68  Aligned_cols=246  Identities=11%  Similarity=-0.047  Sum_probs=179.4

Q ss_pred             HHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccC-chh-------HHH
Q 014067            4 AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQW-------GFG   75 (431)
Q Consensus         4 ~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g-~~~-------~F~   75 (431)
                      ++++.++++.++.+++.+++.+++.+..++   +++++.+++|||..+.+.+.+ +++..+..... +..       -++
T Consensus        87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiGS-lis~~i~~~l~~~~~~fg~~~~~~~  162 (654)
T TIGR00926        87 LDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAGS-LISTIITPILRGDVGCFGCQDCYPL  162 (654)
T ss_pred             HHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccccCcchHH
Confidence            467789999999999999999999987753   556679999999999999865 44444443332 332       345


Q ss_pred             HHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCC
Q 014067           76 ISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVP  155 (431)
Q Consensus        76 i~~i~~~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~  155 (431)
                      ..++.+++.++.++.+...++..++.+.+...+.++++......+.+.             ..     .+.       . 
T Consensus       163 aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~-------------~~-----~~~-------~-  216 (654)
T TIGR00926       163 AFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRF-------------ST-----RSE-------H-  216 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhh-------------cc-----CCc-------c-
Confidence            888889999999999887777666665544445555544433221100             00     000       0 


Q ss_pred             CCCCchhHHHHhhhccCCCCCCccc--cccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccC
Q 014067          156 SQKPTEDIKFLNRALRNNPAYPIVQ--CTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVP  233 (431)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip  233 (431)
                                        ....|..  .....+++++...+++.++...+.+|+.+.|.......+..++++..+.+...
T Consensus       217 ------------------~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~  278 (654)
T TIGR00926       217 ------------------WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGF  278 (654)
T ss_pred             ------------------cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCE
Confidence                              0011111  12223467888999999999999999999999988899999999886654444


Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV  300 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~  300 (431)
                      +...+.++.+-.++.+|+...+.+|+.++.+++   ..+++++.-+.+.++++.+.+++++..+...
T Consensus       279 ~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~  342 (654)
T TIGR00926       279 EIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKV  342 (654)
T ss_pred             ecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556789999999999999999889999997554   5678889999999999999999998766543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.57  E-value=6e-06  Score=85.01  Aligned_cols=116  Identities=12%  Similarity=0.170  Sum_probs=74.2

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 014067          237 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT  316 (431)
Q Consensus       237 l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s  316 (431)
                      +..++.+..++..|+..++.    +|.       ...+.+.+++++.+++.+.....-           ..     .+.+
T Consensus       271 ~~~~~~i~~ii~~~~~~~l~----~r~-------gkk~~~~~~~~~~~~~~~~~~~~~-----------~~-----~~~~  323 (473)
T PRK10429        271 YLSYAGAANLVTLILFPRLV----KSL-------SRRILWAGASIFPVLSCGVLLLMG-----------LA-----APHN  323 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHc-------CcHHHHHHHHHHHHHHHHHHHHHh-----------cc-----Cchh
Confidence            34445555666666665543    442       222335556665555544433220           00     0123


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhcccC-------chhhhHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 014067          317 FLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSIVNNI  379 (431)
Q Consensus       317 ~~wli~~~~l~~igE~~~~~~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~  379 (431)
                      .++++...++.++++....+...+++.+.+|       ++..|.+.|.+.+..-+|..+++.+.+.+-..
T Consensus       324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666788899999999999999999977       45577799999999988888888877766433

>PRK10133 L-fucose transporter; Provisional

Probab=98.45  E-value=1.8e-05  Score=80.60  Aligned_cols=58  Identities=28%  Similarity=0.328  Sum_probs=44.2

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE   65 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~   65 (431)
                      +++++++.++|.|...+..++++.|..+++      ++....+.+.....+|..+|+.+++.+.
T Consensus       120 ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        120 FLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999764322      2333467778888899999998877543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.38  E-value=6e-06  Score=81.38  Aligned_cols=77  Identities=16%  Similarity=0.206  Sum_probs=53.7

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc----------ccCch
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED----------NKGWQ   71 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~----------~~g~~   71 (431)
                      ++++..+.+++.+.+ +...+.++|.++++      +|..+.+++..+.|+|..+++.+.+.+.+          +.+|+
T Consensus        94 ~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~  166 (366)
T TIGR00886        94 LLLLRLFIGIAGGSF-ASCMPWISFFFPKK------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG  166 (366)
T ss_pred             HHHHHHHHHHhchhh-HhHHHHHHHhcCHh------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            456677788886665 45678889988644      35667888888888898888887776543          34899


Q ss_pred             hHH-HHHHHHHHHHH
Q 014067           72 WGF-GISTATILLSI   85 (431)
Q Consensus        72 ~~F-~i~~i~~~i~~   85 (431)
                      +.| .+.++...+..
T Consensus       167 ~~~~~~~~~~~~~~~  181 (366)
T TIGR00886       167 WAFVIVPAGILLLPA  181 (366)
T ss_pred             chhHHHHHHHHHHHH
Confidence            999 54444444433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.37  E-value=3.6e-05  Score=77.77  Aligned_cols=81  Identities=17%  Similarity=0.159  Sum_probs=61.8

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc---------------
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---------------   66 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~---------------   66 (431)
                      +++++.+.++|.|...+..++.+.+..+++      ++.+..++.....++|+.+|+.+++.+..               
T Consensus        97 ~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~  170 (410)
T TIGR00885        97 FLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLS  170 (410)
T ss_pred             HHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcC
Confidence            456777899999999999999998876543      23456778888999999999999887732               


Q ss_pred             -----------ccCchhHHHHHHHHHHHHHHHH
Q 014067           67 -----------NKGWQWGFGISTATILLSIPIF   88 (431)
Q Consensus        67 -----------~~g~~~~F~i~~i~~~i~~iif   88 (431)
                                 ..+|+..|.+.++..++..+++
T Consensus       171 ~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       171 PEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       2469999988877666554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.35  E-value=0.00011  Score=72.44  Aligned_cols=89  Identities=15%  Similarity=0.113  Sum_probs=70.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhH
Q 014067          274 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL  353 (431)
Q Consensus       274 ~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~  353 (431)
                      +.-.+|....++++....+...                  .-+.+.+.+..+++|+|--+.....++..-++++++..|+
T Consensus       276 ~~a~~G~~~~~~~f~lii~a~~------------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~  337 (403)
T PF03209_consen  276 RTAALGCLLGALAFALIILAGP------------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGL  337 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh------------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhH
Confidence            3344677777777766554420                  1245667789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhcccc
Q 014067          354 ATSLSWASLAMGYYFSTVLVSIVNNIT  380 (431)
Q Consensus       354 ~~gl~~l~~~iG~~l~~~l~~~~~~~~  380 (431)
                      .||+|...++++.-++..+++.+.++.
T Consensus       338 ~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  338 FMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888888877776544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.31  E-value=1.1e-05  Score=80.53  Aligned_cols=136  Identities=12%  Similarity=0.086  Sum_probs=96.5

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++..+...+...++.++.+.+.    +|.       +..+-+..+.++.+++.+.+++.                     
T Consensus        47 g~~~~~~~~~~~~~~~~~g~l~----dr~-------g~r~~~~~~~~~~~~~~~~~~~~---------------------   94 (390)
T PRK03545         47 GLMLTIYAWVVALMSLPLMLLT----SNV-------ERRKLLIGLFVLFIASHVLSALA---------------------   94 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----cCC-------ChHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            3445555555566666665543    442       33345777888877777766654                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                      .++++++...+++|+++....|....++.+..|++.|+..+|++....++|..+++.++..+...      .+|-     
T Consensus        95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~------~gw~-----  163 (390)
T PRK03545         95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY------LGWR-----  163 (390)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH------hcHH-----
Confidence            35677778889999999998999999999999999999999999999999999999888776421      1232     


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHH
Q 014067          395 NHYHLERFYWLMCILGGLNFLHFLF  419 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~~~  419 (431)
                            ..|++.++++++..+....
T Consensus       164 ------~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        164 ------TTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             ------HHHHHHHHHHHHHHHHHHH
Confidence                  3466666666655544333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.30  E-value=2.5e-05  Score=78.83  Aligned_cols=111  Identities=14%  Similarity=0.094  Sum_probs=87.1

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++..+...+...+..++.+++.+++.+|           +-+.+++++.+++.+..++.                     
T Consensus        46 g~~~s~~~~~~~~~~~~~g~l~dr~G~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   93 (412)
T TIGR02332        46 GLAATLFYAAYVICGIPSNIMLAIIGAR-----------RWIAGIMVLWGIASTATMFA---------------------   93 (412)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhChH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            3455666666667777777766544333           33667777777777776654                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .++++++...++.|++|....|....++.+..|++.|+..+|++....++|..+++.+++.+.
T Consensus        94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332        94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            246678888999999999999999999999999999999999999999999999999887664

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11462 putative transporter; Provisional

Probab=98.27  E-value=0.00026  Score=72.60  Aligned_cols=78  Identities=12%  Similarity=0.246  Sum_probs=51.4

Q ss_pred             HHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc-------cCchhHHHHHHHH
Q 014067            8 IVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-------KGWQWGFGISTAT   80 (431)
Q Consensus         8 li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~-------~g~~~~F~i~~i~   80 (431)
                      +..++...+.-...++.++..++.+     +|.+..++...+.++|.++++.++..+.+.       .||.....+.++.
T Consensus       118 ~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii  192 (460)
T PRK11462        118 LLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVV  192 (460)
T ss_pred             HHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence            4556667777788888888876543     367788888999999988877665433221       3566666666665


Q ss_pred             HHHHHHHHHh
Q 014067           81 ILLSIPIFLL   90 (431)
Q Consensus        81 ~~i~~iif~~   90 (431)
                      .++...+...
T Consensus       193 ~~i~~~i~~~  202 (460)
T PRK11462        193 AFMMLAFCFF  202 (460)
T ss_pred             HHHHHHHHHh
Confidence            5555444333

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.25  E-value=2.7e-06  Score=84.31  Aligned_cols=144  Identities=16%  Similarity=0.212  Sum_probs=110.2

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +.+|..--+.-+++.|+.+.+-    .|       .+..+-|++|.++-.++.+..++..                    
T Consensus        71 Gll~~vf~v~~~i~sPl~gyLa----dr-------yNR~~v~~vG~~iW~~Av~~~~fs~--------------------  119 (493)
T KOG1330|consen   71 GLLQTVFIVVFMIASPLFGYLA----DR-------YNRKRVIAVGIFIWTLAVFASGFSN--------------------  119 (493)
T ss_pred             cchhHHHHHHHHHHHHHHHHHH----hh-------cCcceEEeeHHHHHHHHHHHHHHHH--------------------
Confidence            4456555566667888888754    33       2444568899998888887776652                    


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                       ..|-++..-.+.|+||...+|....++.+..|+..||+++|++++..-+|+.+|...+..+...+.     .|=     
T Consensus       120 -~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~Wr-----  188 (493)
T KOG1330|consen  120 -HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WWR-----  188 (493)
T ss_pred             -HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ceE-----
Confidence             234456788999999999999999999999999999999999999999999999888888875542     242     


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014067          395 NHYHLERFYWLMCILGGLNFLHFLFWAARYKY  426 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~  426 (431)
                            +-|+..++++++.+++..+..+.=++
T Consensus       189 ------~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  189 ------WAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             ------EEEEeehHHHHHHHHHHHhhccCccc
Confidence                  34778888888887776666655444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.23  E-value=0.00019  Score=76.62  Aligned_cols=84  Identities=12%  Similarity=0.082  Sum_probs=70.3

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc-------------
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-------------   68 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~-------------   68 (431)
                      ++++.++.++|.+...+...+++.|.++++      ++...+++++.+.++|.++|+++++++.+.+             
T Consensus       175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l  248 (633)
T TIGR00805       175 FLVSQLLRGIGATPIFPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVIL  248 (633)
T ss_pred             hHHHHHHHhccCCcchhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCC
Confidence            568999999999999999999999999765      3677899999999999999999999887543             


Q ss_pred             ---------CchhHHHHHHHHHHHHHHHHHhc
Q 014067           69 ---------GWQWGFGISTATILLSIPIFLLG   91 (431)
Q Consensus        69 ---------g~~~~F~i~~i~~~i~~iif~~~   91 (431)
                               +|+.+|.+.++..++..+.+++.
T Consensus       249 ~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       249 TPTDPRWIGAWWIGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                     28899999988887766555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.17  E-value=5e-05  Score=75.17  Aligned_cols=140  Identities=11%  Similarity=0.003  Sum_probs=99.1

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+..++..|+.+++.++..+|           +-+.++.++.+++.+..+..                     
T Consensus        43 g~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   90 (385)
T TIGR00710        43 QMTLTLYLLGFAAGQLLWGPLSDRYGRR-----------PVLLLGLFIFALSSLGLALS---------------------   90 (385)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhcCCh-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence            4556666666777777777765443222           33666777777776665543                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                      .+.++++...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+++.+....      +|-     
T Consensus        91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~~~-----  159 (385)
T TIGR00710        91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL------SWH-----  159 (385)
T ss_pred             ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CHH-----
Confidence            245667778899999999999999999999999999999999999999999999998887664211      222     


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067          395 NHYHLERFYWLMCILGGLNFLHFLFWAAR  423 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~~~~~~~  423 (431)
                            ..|+..+++.++..+...+..++
T Consensus       160 ------~~~~~~~~~~~~~~~~~~~~~~~  182 (385)
T TIGR00710       160 ------AIFAFLSLAGILLSALIFFILPE  182 (385)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHhCCC
Confidence                  33556666666655554444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.17  E-value=8.9e-05  Score=76.78  Aligned_cols=112  Identities=13%  Similarity=0.005  Sum_probs=88.4

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .+|..+...+...++.|+.+++.+++.+|           +-+.+|.++.+++.+.++..                    
T Consensus        43 ~~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----------~~l~~~~~~~~~~~~~~~~a--------------------   91 (495)
T PRK14995         43 LLWIIDIYSLVMAGMVLPMGALGDRIGFK-----------RLLMLGGTLFGLASLAAAFS--------------------   91 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHc--------------------
Confidence            35666666777778888888877655443           34677888887777776654                    


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcc-cCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTD-APLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~-aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                       .++++++...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+|+.+++.+.
T Consensus        92 -~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~  155 (495)
T PRK14995         92 -PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL  155 (495)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             3567788889999999999988888877665 57899999999999999999999999998875

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.16  E-value=0.00065  Score=69.85  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=66.7

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhc------ccccCchhHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI------EDNKGWQWGFGI   76 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l------~~~~g~~~~F~i   76 (431)
                      .+-..+.++-++..-|+....++.+|++++      +..-+.++|.+.++|..+|.+++..+      ....||++.|.+
T Consensus       138 ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI  211 (495)
T KOG2533|consen  138 IALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFII  211 (495)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhH
Confidence            355778999999999999999999998652      44557888999999999999999885      335799999999


Q ss_pred             HHHHHHHHHHHH
Q 014067           77 STATILLSIPIF   88 (431)
Q Consensus        77 ~~i~~~i~~iif   88 (431)
                      +|+.+++..++.
T Consensus       212 ~G~i~~~~gi~~  223 (495)
T KOG2533|consen  212 EGVITLVLGIVV  223 (495)
T ss_pred             HHHHHHHHHheE
Confidence            999888776543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=8.2e-05  Score=72.65  Aligned_cols=85  Identities=21%  Similarity=0.205  Sum_probs=75.7

Q ss_pred             ChhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHH
Q 014067            1 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTAT   80 (431)
Q Consensus         1 ~~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~   80 (431)
                      ++++++.+=++|.+....+-.++++|-|+++.     +|.++..+---.+.+|.++||..+|.+.|..|+++-|++.++.
T Consensus       161 ~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v  235 (464)
T KOG3764|consen  161 MLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIV  235 (464)
T ss_pred             HHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHH
Confidence            36788899999999999999999999998874     4678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 014067           81 ILLSIPIFLL   90 (431)
Q Consensus        81 ~~i~~iif~~   90 (431)
                      +++...+-++
T Consensus       236 ~Lld~~L~l~  245 (464)
T KOG3764|consen  236 LLLDGALQLL  245 (464)
T ss_pred             HHHHHHHHHh
Confidence            9987654444

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.13  E-value=6.4e-05  Score=77.16  Aligned_cols=112  Identities=7%  Similarity=-0.028  Sum_probs=89.0

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .++..+...+..++..|+.+++.++..+|           +-+.+|.++.+++.+.++..                    
T Consensus        39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------   87 (485)
T TIGR00711        39 VQWVITSYMLANAISIPLTGWLAKRFGTR-----------RLFLISTFAFTLGSLLCGVA--------------------   87 (485)
T ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHhCc--------------------
Confidence            45667777778888888888876554333           33566777776666655443                    


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                       .++++++...++.|++.....|....++.+..|++.|+..+|++.....+|..+++.+++.+.
T Consensus        88 -~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711        88 -PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             -CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence             256677888999999999999999999999999999999999999999999999999887764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.12  E-value=0.00028  Score=70.50  Aligned_cols=95  Identities=11%  Similarity=0.016  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHH-HHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS-WASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  393 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~-~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~  393 (431)
                      .+++|+++.-.+.++---+......-++++..|+++.++...+. .+..++|..+.+.+.+...+..             
T Consensus       310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-------------  376 (412)
T PF01306_consen  310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-------------  376 (412)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-------------
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-------------
Confidence            46778888889999888888899999999999999998888775 5777888888777777664211             


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014067          394 LNHYHLERFYWLMCILGGLNFLHFLFWAARYKY  426 (431)
Q Consensus       394 ~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~  426 (431)
                         | ....|++++++.++..++=.+..++-+.
T Consensus       377 ---G-~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  377 ---G-FQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             ---H-HHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             ---C-cHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence               1 1235788888877776666666555444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.09  E-value=7.7e-05  Score=73.79  Aligned_cols=140  Identities=17%  Similarity=0.155  Sum_probs=113.1

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .+++.+.-.+.+.+..|+...+..++-||           +-+...+.++.++-+.+++.                    
T Consensus        50 aG~lis~yAl~~ai~ap~l~~lt~r~~Rr-----------~lLl~~l~lFi~~n~l~alA--------------------   98 (394)
T COG2814          50 AGQLITAYALGVALGAPLLALLTGRLERR-----------RLLLGLLALFIVSNLLSALA--------------------   98 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchH-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence            46788888999999999998876544333           22445566777777776665                    


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCC
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  393 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~  393 (431)
                       -|++.++..-++.+++--...+...+.+.+++|++.|+..+|+.+...+++..+|..++.++.+..      +|=    
T Consensus        99 -p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GWR----  167 (394)
T COG2814          99 -PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GWR----  167 (394)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hHH----
Confidence             467889999999999999999999999999999999999999999999999999999998886433      353    


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014067          394 LNHYHLERFYWLMCILGGLNFLHFLFWAA  422 (431)
Q Consensus       394 ~n~~~l~~~f~~la~l~~v~~i~~~~~~~  422 (431)
                             .-|+.++.++++..+..+...+
T Consensus       168 -------~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         168 -------ATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHhCC
Confidence                   4588888888888877777776

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=2e-05  Score=76.81  Aligned_cols=147  Identities=12%  Similarity=0.141  Sum_probs=119.5

Q ss_pred             CCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 014067          233 PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP  312 (431)
Q Consensus       233 p~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~  312 (431)
                      ..+++.+.-.++-++..|+.+.+..+...|           .-|.+|++++..+-++.++.+                  
T Consensus       107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~-----------ipm~~Gl~vmf~sTilFafg~------------------  157 (464)
T KOG3764|consen  107 QIGLLFASKALVQLLVNPFFGNLIDRIGYK-----------IPMVAGLFVMFLSTILFAFGN------------------  157 (464)
T ss_pred             chhHHHHHHHHHHHHhcccchhhHHHhccc-----------cHHHHHHHHHHHHHHHHHHcc------------------
Confidence            345666666777777778887766543332           348899999999888888864                  


Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchh-hhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcC
Q 014067          313 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM-RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG  391 (431)
Q Consensus       313 ~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~-~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~  391 (431)
                         |++.++.+..++|+|..+++..+++++.+.-|++. ||.+||+-.-..++|..+|+.+++++.+..++     -. |
T Consensus       158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk-----~a-P  228 (464)
T KOG3764|consen  158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK-----SA-P  228 (464)
T ss_pred             ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC-----cC-c
Confidence               45578899999999999999999999999999977 59999999999999999999999998865431     11 2


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 014067          392 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS  428 (431)
Q Consensus       392 ~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~~~  428 (431)
                                 |+++++++++...+-+++.+.++.++
T Consensus       229 -----------FlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  229 -----------FLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             -----------HHHHHHHHHHHHHHHHheeCccccCc
Confidence                       89999999999999999988877655

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.07  E-value=0.00013  Score=73.23  Aligned_cols=111  Identities=14%  Similarity=0.059  Sum_probs=84.9

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+..++..++.+++.++..+|           +-+.++.++.+++.+..++.                     
T Consensus        53 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------  100 (406)
T PRK11551         53 GWAFSAGILGLLPGALLGGRLADRIGRK-----------RILIVSVALFGLFSLATAQA---------------------  100 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHh---------------------
Confidence            4566777777777888887776544332           33556666666655544432                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .++++++...++.+++.....+...+.+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus       101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  163 (406)
T PRK11551        101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA  163 (406)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            356677788899999999999999999999999999999999999999999999988876553

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.07  E-value=0.00013  Score=60.56  Aligned_cols=108  Identities=19%  Similarity=0.201  Sum_probs=79.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 014067          238 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF  317 (431)
Q Consensus       238 ~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~  317 (431)
                      .....+..++..|+.+++.++..+           .+-+..+..+.+++.......                     .+.
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~~   51 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGR-----------KPVLLVGLFIFVLSTAMFALS---------------------SNI   51 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcch-----------hHHHHHHHHHHHHHHHHHHHh---------------------ccH
Confidence            344556666777777765543322           233555666666555544332                     235


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          318 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       318 ~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      +++....++.+++.-...+.....+.+..|++.|+..+|+......+|..+++.+.+.+.
T Consensus        52 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        52 TVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence            566677889999998888999999999999999999999999999999999998887764

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.06  E-value=0.00011  Score=73.21  Aligned_cols=112  Identities=10%  Similarity=0.040  Sum_probs=88.5

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .++..+.+.+..++..|+.+++.++..           ..+-+.++.++.+++.+.+++.                    
T Consensus        40 ~g~~~s~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~l~~~~--------------------   88 (382)
T PRK10091         40 AGHMISYYALGVVVGAPIIALFSSRYS-----------LKHILLFLVALCVIGNAMFTLS--------------------   88 (382)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHccCc-----------cHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            356677888888888888887654332           2234667778777777766554                    


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                       .+.++++...++.|+++....+.....+.+..|++.|+..+|++.....+|..+++.+++.+.
T Consensus        89 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         89 -SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             -CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence             356778888999999999988888889999999999999999999999999999988877664

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.06  E-value=5.4e-05  Score=73.76  Aligned_cols=134  Identities=16%  Similarity=0.189  Sum_probs=99.9

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+...+..|+.+++.++..+|           +-+.++.++.+++.....+.                     
T Consensus        35 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~---------------------   82 (352)
T PF07690_consen   35 GLLFSAFFLGSALFSPFAGYLSDRFGRR-----------RVLIIGLLLFALGSLLLAFA---------------------   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-HH-----------HHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCe-----------eeEeehhhhhhhHHHHhhhh---------------------
Confidence            4556667777778888888776544332           34667777777774444432                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                      .+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+++.+.+..      +|-     
T Consensus        83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~~~-----  151 (352)
T PF07690_consen   83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------GWR-----  151 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------HHC-----
T ss_pred             hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------ccc-----
Confidence            134478889999999999999999999999999999999999999999999999999988775211      121     


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHH
Q 014067          395 NHYHLERFYWLMCILGGLNFLHF  417 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~  417 (431)
                            ..|++.+++.++..++.
T Consensus       152 ------~~~~~~~~~~~~~~il~  168 (352)
T PF07690_consen  152 ------WAFLISAILSLIAAILF  168 (352)
T ss_dssp             ------CHHHHHHHHHHHHHHHH
T ss_pred             ------cccccccchhhhhhhhH
Confidence                  24777777777776643

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.05  E-value=0.00016  Score=72.63  Aligned_cols=110  Identities=11%  Similarity=0.023  Sum_probs=87.3

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      +..+...+...+..|+..++.++.           ...+-+..++++.+++.+..++.                     .
T Consensus        59 ~~~~~~~~~~~~~~~~~g~l~Dr~-----------grr~~~~~~~~~~~~~~~~~~~~---------------------~  106 (394)
T PRK10213         59 QSVTVTAFVAMFASLFITQTIQAT-----------DRRYVVILFAVLLTLSCLLVSFA---------------------N  106 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc-----------CcHHHHHHHHHHHHHHHHHHHHH---------------------C
Confidence            445667777777888887665433           22244677888887776665443                     3


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      +.++++...++.|++.....|.....+.+..|++.|+..+|+.....++|..+++.+++.+.
T Consensus       107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~  168 (394)
T PRK10213        107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG  168 (394)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788888899999999999999999999999999999999999999999999999988775

>PRK10054 putative transporter; Provisional

Probab=98.04  E-value=0.00012  Score=73.57  Aligned_cols=112  Identities=12%  Similarity=0.148  Sum_probs=83.7

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .++..++..+..++..|+.+++.++..+|           +-+.+|.++.+++++..++.+                   
T Consensus        45 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k-----------~~~~~~~~~~~~~~~~~~~~~-------------------   94 (395)
T PRK10054         45 IGYAMTIALTIGVVFSLGFGILADKFDKK-----------RYMLLAITAFASGFIAIPLVN-------------------   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhHHHHHHHHHHHHHHHHHHh-------------------
Confidence            35566677777788888888877654332           235677777777776665542                   


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                        +.+.++..+.+.+.+.....+.....+.+..|++.|+..+|+.....++|..+++.+++.+.
T Consensus        95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              23344445667777777778888899999999999999999999999999999999988775

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.03  E-value=0.002  Score=66.26  Aligned_cols=84  Identities=10%  Similarity=0.079  Sum_probs=63.8

Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHHH
Q 014067          324 YLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFY  403 (431)
Q Consensus       324 ~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f  403 (431)
                      -++.|+.---..+..=++..++.|++..+.+.|+|.++.-..+.+||++.+++...+++              .+  +-+
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~--------------~r--~g~  450 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS--------------QR--YGF  450 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------ch--hHH
Confidence            34566666667788889999999999999999999999999999999999999866631              11  225


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 014067          404 WLMCILGGLNFLHFLFWAAR  423 (431)
Q Consensus       404 ~~la~l~~v~~i~~~~~~~~  423 (431)
                      +.+.++.+++++++..+..+
T Consensus       451 ~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  451 LFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHHHHHHHHHHHHHhhccch
Confidence            56666667777766554433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.03  E-value=0.0006  Score=69.53  Aligned_cols=83  Identities=6%  Similarity=-0.083  Sum_probs=54.8

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc-----c----------
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-----D----------   66 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~-----~----------   66 (431)
                      +++..++.++| |..-+.....+.++|+++      +|..+.+++....|+|..+++++++.+.     .          
T Consensus       131 lli~r~l~Gig-g~~f~~~~~~vs~wfp~~------~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~  203 (462)
T PRK15034        131 FIVIALLCGFA-GANFASSMGNISFFFPKA------KQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQA  203 (462)
T ss_pred             HHHHHHHHHHH-HHhHHHHHHHHHHHCCHh------HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            45566778887 667788889999999754      3567888887788888877666665432     2          


Q ss_pred             ---ccCchhHHHHHHHHHHHHHHHHHhc
Q 014067           67 ---NKGWQWGFGISTATILLSIPIFLLG   91 (431)
Q Consensus        67 ---~~g~~~~F~i~~i~~~i~~iif~~~   91 (431)
                         ..+|+.++.+-.+..++..+++++.
T Consensus       204 ~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        204 DGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               2345655555555555555555443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.03  E-value=9e-05  Score=74.90  Aligned_cols=138  Identities=9%  Similarity=0.066  Sum_probs=94.5

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      +..++..+...+.+|+.+.+.+++.||           +-+..|+++.+++.+..++.                     .
T Consensus        55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr-----------~~l~~~~~~~~~~~~~~~~a---------------------~  102 (413)
T PRK15403         55 ASVSLYLAGGMALQWLLGPLSDRIGRR-----------PVLITGALIFTLACAATLFT---------------------T  102 (413)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHc---------------------C
Confidence            344455555566677766655444332           34566777776666555443                     3


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCC
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  395 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n  395 (431)
                      ++++++...+++|+++.+..+.....+.+.-|++.++..+|++.....+|..+|+.+++.+...      .+|-      
T Consensus       103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~------~gw~------  170 (413)
T PRK15403        103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF------VHWK------  170 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCHH------
Confidence            5677888899999999887777778888888999999999999999999999999888766421      1232      


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014067          396 HYHLERFYWLMCILGGLNFLHFLFWAA  422 (431)
Q Consensus       396 ~~~l~~~f~~la~l~~v~~i~~~~~~~  422 (431)
                           ..|+..+++.++..+...+..+
T Consensus       171 -----~~f~~~~~~~~i~~~~~~~~lp  192 (413)
T PRK15403        171 -----VLFAIIAVMGLIAFVGLLLAMP  192 (413)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHhCC
Confidence                 3466667766666554443333

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.99  E-value=0.0001  Score=72.67  Aligned_cols=138  Identities=14%  Similarity=0.095  Sum_probs=101.9

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .+++.+...+..++..|+.+++.++..+|           +-+.++.++.+++....++.                    
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------   79 (399)
T TIGR00893        31 YGYVFSAFSWGYVVGQFPGGWLLDRFGAR-----------KTLAVFIVIWGVFTGLQAFA--------------------   79 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhcCcc-----------eeeHHHHHHHHHHHHHHHHH--------------------
Confidence            35667778888888888888876654433           12456666666666665553                    


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCC
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  393 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~  393 (431)
                       .+.++++...++.|++.....+....++.+..|++.|+..+|++.....+|..+++.+.+.+...      .+|-    
T Consensus        80 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~----  148 (399)
T TIGR00893        80 -GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH------FSWQ----  148 (399)
T ss_pred             -cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh------CCch----
Confidence             25667788899999999999999999999999999999999999999999999999888765321      1232    


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014067          394 LNHYHLERFYWLMCILGGLNFLHFLFW  420 (431)
Q Consensus       394 ~n~~~l~~~f~~la~l~~v~~i~~~~~  420 (431)
                             +.|+..+++.++..++..+.
T Consensus       149 -------~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893       149 -------WAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             -------HHHHHHHHHHHHHHHHhhhe
Confidence                   45666666666665554443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.99  E-value=0.00011  Score=71.87  Aligned_cols=116  Identities=16%  Similarity=0.132  Sum_probs=88.8

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.++..+..++..|+.+++.++..||           +-+.++.++.+++....++....                ..
T Consensus        37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~----------------~~   89 (365)
T TIGR00900        37 SLAALAGMLPYVVLSPIAGALADRYDRK-----------KVMIGADLIRAVLVAVLPFVALL----------------GG   89 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhchh-----------HHHHHHHHHHHHHHHHHHHHHHc----------------CC
Confidence            4566777777888888888876654433           23556666666665555554310                01


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+.+++....++.+++..+..|...+++.+..|++.|+..+|+......+|..+++.+++.+.
T Consensus        90 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        90 LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            367778888999999999999999999999999999999999999999999999999887764

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.97  E-value=0.00029  Score=71.62  Aligned_cols=111  Identities=12%  Similarity=-0.012  Sum_probs=83.9

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+...+..|+.+++.+++.+|           +-+.+++++.+++.+..++.                     
T Consensus        61 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------  108 (434)
T PRK11663         61 GLLATLFYITYGVSKFVSGIVSDRSNAR-----------YFMGIGLIATGIINILFGFS---------------------  108 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhcCCc-----------hhHHHHHHHHHHHHHHHHHH---------------------
Confidence            4455666666777777777766444322           23667777777776665553                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+++.++...++.++++....+.....+.+..|++.||..+|++....++|..+++.+.+.+.
T Consensus       109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  171 (434)
T PRK11663        109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA  171 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            244556666788899998888999999999999999999999999999999999998887764

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.97  E-value=0.00017  Score=71.85  Aligned_cols=112  Identities=16%  Similarity=0.143  Sum_probs=88.2

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .+++.++..+...+..|+.+++.++..+|           +-+.++.++.+++.+..++.                    
T Consensus        49 ~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------   97 (405)
T TIGR00891        49 AASLISAALISRWFGALMFGLWGDRYGRR-----------LPMVTSIVLFSAGTLACGFA--------------------   97 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence            34567777788888888888877655433           23556666666666555443                    


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                       .+++++....++.|+++....+....++.+..|++.|+..+|++....++|..+++.+...+.
T Consensus        98 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891        98 -PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             -ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             246667788899999999999999999999999999999999999999999999998887664

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.96  E-value=0.00026  Score=71.17  Aligned_cols=108  Identities=15%  Similarity=0.031  Sum_probs=82.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 014067          238 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF  317 (431)
Q Consensus       238 ~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~  317 (431)
                      .....+..++..|+.+++.++..+|           +-+..|.++.+++++.+...                     .++
T Consensus        52 ~~~~~l~~~~~~~~~G~l~dr~g~k-----------~~l~~~~~~~~~~~~~~~~~---------------------~~~   99 (400)
T PRK11646         52 LGLRQFIQQGLGIFGGAIADRFGAK-----------PMIVTGMLMRAAGFATMAIA---------------------HEP   99 (400)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHh---------------------ccH
Confidence            3344444555566666665443222           33667778777777766543                     256


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          318 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       318 ~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      |+++...++.++++....|...+.+.+.+|++.|+..+|+.....++|..+|+.+++.+.
T Consensus       100 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        100 WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888899999998888999999999999999999999999999999999999988774

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.93  E-value=0.00023  Score=71.07  Aligned_cols=137  Identities=16%  Similarity=0.063  Sum_probs=95.8

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      +..++..+..++..|+.+++.+++.||           +-+.+|.++.+++.......                     .
T Consensus        42 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~i~~~~~~~~---------------------~   89 (392)
T PRK10473         42 IAFSVYLAGMAAAMLFAGKIADRSGRK-----------PVAIPGAALFIIASLLCSLA---------------------E   89 (392)
T ss_pred             HHHHHHHHHHHHHHHhHhHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHh---------------------C
Confidence            445566666677788888877655332           23556776666666554443                     2


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCC
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  395 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n  395 (431)
                      +.++++...++++++..+..+.....+.+..|++.|+..+|++.....+|..+++.++..+...      .+|-      
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~------~g~~------  157 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK------FPWQ------  157 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------cChH------
Confidence            4566777888999999998899999999999999999999999999999999998887765421      1232      


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHh
Q 014067          396 HYHLERFYWLMCILGGLNFLHFLFWA  421 (431)
Q Consensus       396 ~~~l~~~f~~la~l~~v~~i~~~~~~  421 (431)
                           ..|++.++++++..++..+..
T Consensus       158 -----~~~~~~~~~~~i~~~~~~~~~  178 (392)
T PRK10473        158 -----SLFYTMAAMGILVLLLSLFIL  178 (392)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHc
Confidence                 345666666665555443333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.90  E-value=0.00065  Score=67.95  Aligned_cols=137  Identities=14%  Similarity=0.108  Sum_probs=92.8

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      +..++..+...+..|+.+++.++..+|           +-+..+.++.+++....+..                     .
T Consensus        58 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------~  105 (408)
T PRK09874         58 LVFSITFLFSAIASPFWGGLADRKGRK-----------IMLLRSALGMGIVMVLMGLA---------------------Q  105 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhCcH-----------HHHHHHHHHHHHHHHHHHHH---------------------h
Confidence            445666677777888887776544322           23556666666665554442                     3


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCC
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  395 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n  395 (431)
                      ++++++...++.+++..+ .+.....+.+..|++.|+..+|++.....+|..+++.+.+.+....      +|-      
T Consensus       106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~~------  172 (408)
T PRK09874        106 NIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY------GLR------  172 (408)
T ss_pred             hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CHH------
Confidence            466777788888888765 4667788889999999999999999999999999998887764211      121      


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014067          396 HYHLERFYWLMCILGGLNFLHFLFWAA  422 (431)
Q Consensus       396 ~~~l~~~f~~la~l~~v~~i~~~~~~~  422 (431)
                           ..|++.+++.++..+...+..+
T Consensus       173 -----~~~~~~~~~~~~~~~~~~~~~~  194 (408)
T PRK09874        173 -----PVFFITASVLFLCFLVTLFCIR  194 (408)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhc
Confidence                 3466666666666555444443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.89  E-value=0.0025  Score=64.10  Aligned_cols=129  Identities=12%  Similarity=0.119  Sum_probs=85.1

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCch
Q 014067          270 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS  349 (431)
Q Consensus       270 ~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~  349 (431)
                      .+..+-+.+|++..++=+...+..+             ++   .+..+..++...+++|+.-.+..+++..++.+.+|++
T Consensus       270 ~g~~~ll~~a~~~~~vR~~l~a~~~-------------~~---~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~  333 (400)
T PF03825_consen  270 FGIKWLLLLALVAYAVRWLLYAYFS-------------DP---WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE  333 (400)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhc-------------CC---cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc
Confidence            3455556667666666555555441             00   1122222344456899999999999999999999999


Q ss_pred             hhhHHHHHHHHH-HHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 014067          350 MRSLATSLSWAS-LAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  425 (431)
Q Consensus       350 ~~g~~~gl~~l~-~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~  425 (431)
                      .|+..||++... .++|..+|..+++.+.+.-+         .+.  --....+|.+.+++.++..+++++..|+-+
T Consensus       334 ~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g---------~~~--~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  334 LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG---------ARG--MFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc---------chh--hhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            999999998765 58888888888877653221         110  001224567777788888888888766543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.88  E-value=0.00011  Score=75.46  Aligned_cols=115  Identities=10%  Similarity=-0.172  Sum_probs=84.6

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+...+..|+.+++.+++.           +.+-+.+++++.+++.+..+..-.         +       ..
T Consensus        67 g~~~s~~~~~~~~~~~~~G~l~Dr~g-----------~r~~l~~~~~~~~~~~~~~~~~~~---------~-------~~  119 (467)
T PRK09556         67 GMIGLGFSITYGVGKTLVGYYADGKN-----------TKQFLPFLLILSAICMLGFGASLG---------S-------GS  119 (467)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhhccC-----------ccchHHHHHHHHHHHHHHHHHHHh---------c-------cc
Confidence            44555556666677788777654332           224466777776666655554310         0       12


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV  376 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~  376 (431)
                      .+.+.++...++.|++|-...|.....+.+..|++.||.++|++....++|..+++.+....
T Consensus       120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence            35677888899999999999999999999999999999999999999999999998876544

>TIGR00895 2A0115 benzoate transport

Probab=97.87  E-value=0.00016  Score=71.66  Aligned_cols=111  Identities=15%  Similarity=0.087  Sum_probs=84.1

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+..++..|+.+++.++..+|           +-+.++.++.+++.+..++.                     
T Consensus        55 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~---------------------  102 (398)
T TIGR00895        55 GFLFSAGLIGMAFGALFFGPLADRIGRK-----------RVLLWSILLFSVFTLLCALA---------------------  102 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence            3455566666667777777766554332           33556666666666555443                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+.++++...++.+++.....+.....+.+..|++.|+..+|+......+|..+++.+.+.+.
T Consensus       103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  165 (398)
T TIGR00895       103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI  165 (398)
T ss_pred             cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence            245567778899999999999999999999999999999999999999999999998887664

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.85  E-value=0.00026  Score=70.91  Aligned_cols=111  Identities=17%  Similarity=0.074  Sum_probs=88.0

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .++..+.+.+...+.+|+.+++.++..+|           +-+..|+++.+++.+..++.+                   
T Consensus        46 ~g~~~s~~~~~~~l~~~~~g~l~dr~G~r-----------~~l~~~~~l~~~~~~~~~~a~-------------------   95 (393)
T PRK09705         46 AALLTALPVVTMGGLALAGSWLHQHVSER-----------RSVAISLLLIAVGALMRELYP-------------------   95 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHCc-------------------
Confidence            35566777778888888888877554443           447788898988888877752                   


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                        ++++++...++.|+++....+...+.+.+..| +.|+.++|++......|..+++.++..+.
T Consensus        96 --~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~  156 (393)
T PRK09705         96 --QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV  156 (393)
T ss_pred             --chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              45566778999999999999998899988887 77999999999988888888888877654

>PRK10504 putative transporter; Provisional

Probab=97.84  E-value=0.00057  Score=70.04  Aligned_cols=110  Identities=13%  Similarity=0.048  Sum_probs=81.9

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      ++.+...+...+..|+.+++.++..+|           +-+..+.++.+++.+..++.                     .
T Consensus        49 ~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------~   96 (471)
T PRK10504         49 MVIVSYVLTVAVMLPASGWLADRVGVR-----------NIFFTAIVLFTLGSLFCALS---------------------G   96 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHHh---------------------C
Confidence            445555555667777777766554333           23445666666665554332                     2


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      +.++++...+++|++.....|.....+.+..|++.++..+|+......+|..+++.+++.+.
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            45567778899999999999999999999999999999999999999999999999887765

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.83  E-value=7.9e-05  Score=73.19  Aligned_cols=139  Identities=14%  Similarity=-0.006  Sum_probs=98.4

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+...+..|+.+++.++..+|           +-+.+|.++.+++.+..++.                     
T Consensus        33 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   80 (379)
T TIGR00881        33 GLLLSSFSIAYGISKFVMGSVSDRSNPR-----------VFLPIGLILCAIVNLFFGFS---------------------   80 (379)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhhCCe-----------ehhHHHHHHHHHHHHHHHHh---------------------
Confidence            4556677777777788887766544332           23667777777777766654                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhh-hhhhhhccccccCCCCCCCcCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFST-VLVSIVNNITSTYRHTPWLFGSN  393 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~-~l~~~~~~~~~~~~~~~w~~~~~  393 (431)
                      .+.++++...++.++++.+..|.....+.+..|++.|+..+|++.....+|..+++ .+...+...      .+|-    
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~----  150 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL------YSWH----  150 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc------CCch----
Confidence            24567778889999999999999999999999999999999999999999999998 454443211      1232    


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014067          394 LNHYHLERFYWLMCILGGLNFLHFLFWAA  422 (431)
Q Consensus       394 ~n~~~l~~~f~~la~l~~v~~i~~~~~~~  422 (431)
                             ..|++.++++++..++..+..+
T Consensus       151 -------~~~~~~~~~~~~~~~~~~~~~~  172 (379)
T TIGR00881       151 -------WVFIVPGIIAIIVSLICFLLLR  172 (379)
T ss_pred             -------hHHHHHHHHHHHHHHHHheeeC
Confidence                   2366666666665555544433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.82  E-value=0.004  Score=63.11  Aligned_cols=85  Identities=8%  Similarity=0.024  Sum_probs=61.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccC------
Q 014067          274 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP------  347 (431)
Q Consensus       274 ~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP------  347 (431)
                      +-+.+|.++.+++.+...+..                   .-+.++.+...++.++|-....+.-++++.+...      
T Consensus       303 ~~~~~~~~~~~i~~~~~~f~~-------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~T  363 (467)
T COG2211         303 KLFLIGLLLLAVGYLLLYFTP-------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKT  363 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc-------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHh
Confidence            447778888888877776652                   2345566667788888888888888888877654      


Q ss_pred             -chhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          348 -LSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       348 -~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                       ++..|..-|...+..=+|..+++.+.+++-
T Consensus       364 G~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         364 GVRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             566788888888887777777776655543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.82  E-value=0.00095  Score=67.01  Aligned_cols=135  Identities=13%  Similarity=0.072  Sum_probs=90.1

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      +..+...+...+..|+.+.+.++..+|           +-+.++.++.+++....+..                     .
T Consensus        52 ~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~---------------------~   99 (406)
T PRK15402         52 TSMTAYLAGGMFLQWLLGPLSDRIGRR-----------PVMLAGVAFFILTCLAILLA---------------------Q   99 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHH---------------------c
Confidence            344555556666667777665444322           23556666666665554443                     2


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCC
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  395 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n  395 (431)
                      +.++++...++.+++..+..+.....+.+..|++.++..+++......+|..+++.+++.+...      .+|-      
T Consensus       100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~------~~w~------  167 (406)
T PRK15402        100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV------LPWR------  167 (406)
T ss_pred             cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cCcc------
Confidence            4556777788999999888888899999999999999999988887788888888887765421      1232      


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHH
Q 014067          396 HYHLERFYWLMCILGGLNFLHFLF  419 (431)
Q Consensus       396 ~~~l~~~f~~la~l~~v~~i~~~~  419 (431)
                           ..|+..++++++..+....
T Consensus       168 -----~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK15402        168 -----GMFVLFAALAALSFFGLWR  186 (406)
T ss_pred             -----HHHHHHHHHHHHHHHHHHH
Confidence                 3356666666665554433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.80  E-value=0.0012  Score=65.01  Aligned_cols=111  Identities=19%  Similarity=0.169  Sum_probs=82.0

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .+++.+...+..++..|+.+++.++..+|           +.+.++.++.+++.+..++..                   
T Consensus        39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~~~~~~~-------------------   88 (366)
T TIGR00886        39 LGNLVAVPVLAGAVLRIILGFLVDKFGPR-----------YTTTLSLLLLAIPCLWAGLAV-------------------   88 (366)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            45677788888888888888877554332           346678888888777766542                   


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV  376 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~  376 (431)
                       .++++++...++.+++.... +.....+.+..|++.|+..++++.....+|..+++.+...+
T Consensus        89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence             15666777888999987655 45678999999999999999999877777777666665443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.80  E-value=0.0041  Score=60.37  Aligned_cols=81  Identities=23%  Similarity=0.403  Sum_probs=66.8

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccccc-CchhHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWGFGISTAT   80 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i~~i~   80 (431)
                      ++.+.+++++|.+..+.-.++++-+-|+++       .....+.|-.+.++|+.+++.++..+.++. ||+.+...=++.
T Consensus       102 L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~  174 (395)
T COG2807         102 LFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALL  174 (395)
T ss_pred             HHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHH
Confidence            577888899999999999999998888754       356788889999999999999999998887 799888777776


Q ss_pred             HHHHHHHHH
Q 014067           81 ILLSIPIFL   89 (431)
Q Consensus        81 ~~i~~iif~   89 (431)
                      -++++++.+
T Consensus       175 allAl~~Wl  183 (395)
T COG2807         175 ALLALLIWL  183 (395)
T ss_pred             HHHHHHHHh
Confidence            666666443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.78  E-value=0.0013  Score=65.54  Aligned_cols=112  Identities=12%  Similarity=-0.016  Sum_probs=89.0

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .++..+...+...+..|+.+++.++..+|           +-+.+|.++.+++....++.                    
T Consensus        43 ~G~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~--------------------   91 (381)
T PRK03633         43 VGVVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLM--------------------   91 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence            35667777777788888888877665544           34667788877777665553                    


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                       .|.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+|+.+.+.+.
T Consensus        92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         92 -VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             256677788899999999988888888888999999999999999999999999999887764

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.77  E-value=0.00046  Score=69.98  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=85.4

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.++..+...+..|+.+++.+++.||           +-+.++.++.+++.+..++..                  ..
T Consensus        74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr-----------~~~~~~~~~~~~~~~~~~~~~------------------~~  124 (481)
T TIGR00879        74 GLVVSIFLVGGFIGALFAGWLSDRFGRK-----------KSLLIIALLFVIGAILMGLAA------------------FA  124 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHhc------------------cc
Confidence            4556666777778888888776555433           335667777777666655542                  12


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhh
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLV  373 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~  373 (431)
                      .+.++++...++.|+++....+....++.+..|++.|+..+|++.....+|..+++.+.
T Consensus       125 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            34457778889999999999999999999999999999999999999999999999887

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12382 putative transporter; Provisional

Probab=97.75  E-value=0.00081  Score=67.14  Aligned_cols=119  Identities=12%  Similarity=0.064  Sum_probs=86.3

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +.+.+...+...+.+|+.+++.+++.+|           +-+.+|.+..+++.+.......     .        +....
T Consensus        54 g~~~s~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~-----~--------~~~~~  109 (392)
T PRK12382         54 GIAVGIQFLATVLTRGYAGRLADQYGAK-----------RSALQGMLACGLAGLAYLLAAI-----L--------PVSAP  109 (392)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHhhcch-----------HHHHHHHHHHHHHHHHHHhhhc-----c--------ccchh
Confidence            4567777788888899999887665443           2355566555544332222110     0        00012


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+.++++...++.|+++....+...+.+.+..|++.|+..+|.+.....+|..+++.+++.+.
T Consensus       110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~  172 (392)
T PRK12382        110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH  172 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            467778888999999999999999999999999999999999999988899999998887764

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.75  E-value=0.011  Score=60.50  Aligned_cols=84  Identities=19%  Similarity=0.248  Sum_probs=62.0

Q ss_pred             ChhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhh-h-hcccccCchhHHHHHH
Q 014067            1 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV-V-WIEDNKGWQWGFGIST   78 (431)
Q Consensus         1 ~~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~-~-~l~~~~g~~~~F~i~~   78 (431)
                      ++.+|..+.++..|.......-++.+.-|++      .|...=...-.++++|.+++..++ + .+..+-.|++.+..+.
T Consensus       118 ~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~  191 (485)
T KOG0569|consen  118 MLILGRLIVGLACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPL  191 (485)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHH
Confidence            3678899999999999988888888776543      244444445678889999885554 2 4556667999999999


Q ss_pred             HHHHHHHHHHHh
Q 014067           79 ATILLSIPIFLL   90 (431)
Q Consensus        79 i~~~i~~iif~~   90 (431)
                      +..++.++...+
T Consensus       192 i~~~~~l~~l~~  203 (485)
T KOG0569|consen  192 IPALLQLALLPF  203 (485)
T ss_pred             HHHHHHHHHHhc
Confidence            888877665543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.72  E-value=0.0006  Score=66.02  Aligned_cols=111  Identities=14%  Similarity=0.101  Sum_probs=88.4

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++..+...+..++..|+.+++.++..||           +-+.++.++.+++.......                     
T Consensus        37 ~~~~~~~~~~~~~~~~~~g~~~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   84 (352)
T cd06174          37 GLIVSAFSLGYALGSLLAGYLSDRFGRR-----------RVLLLGLLLFALGSLLLAFA---------------------   84 (352)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhCCc-----------hhhHHHHHHHHHHHHHHHHh---------------------
Confidence            4556677777778888888776554332           23667777777777665553                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+.+++....++.+++..+..+....+..+..|++.|+..+|+.....++|..+++.+.+.+.
T Consensus        85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  147 (352)
T cd06174          85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA  147 (352)
T ss_pred             ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            245677788999999999999999999999999999999999999999999999999887765

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.71  E-value=0.0014  Score=70.79  Aligned_cols=110  Identities=12%  Similarity=0.047  Sum_probs=84.8

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.++..+..++..++.+++.+++.||           +-+.+++++.+++.++.++.                     
T Consensus       205 g~l~s~~~lG~iiG~li~G~LsDR~GRR-----------~~lii~lil~~i~~ll~afa---------------------  252 (742)
T TIGR01299       205 GMLGLIVYLGMMVGAFFWGGLADKLGRK-----------QCLLICLSVNGFFAFFSSFV---------------------  252 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence            4566777777778888877776555443           33556666666655555443                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV  376 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~  376 (431)
                      .++++++...++.|++.....|....++.+.+|++.||..++++....++|..+++.++..+
T Consensus       253 ~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       253 QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            24667788899999999999999999999999999999999999999999999988776554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.70  E-value=0.00059  Score=67.51  Aligned_cols=139  Identities=14%  Similarity=0.126  Sum_probs=97.0

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.++..+...+..|+.+++.++..|           .+-+..|.++.+++.......+                    
T Consensus        29 ~~~~~~~~~~~~~~~~~~g~l~d~~g~-----------~~~~~~~~~~~~i~~~~~~~~~--------------------   77 (377)
T PRK11102         29 QMTLSAYILGFAIGQLFYGPMADSFGR-----------KPVILGGTLVFALAAVACALAQ--------------------   77 (377)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHhhcCC-----------hHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence            344566666677777777766543322           2346677777777776665542                    


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                       +.+.++...++.+++.....+...+.+.+..|++.|+..+|++.....+|..+++.+++.+....      +|      
T Consensus        78 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~------  144 (377)
T PRK11102         78 -TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF------SW------  144 (377)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------Ch------
Confidence             34556677889999999888999999999999999999999999999999999998887664211      22      


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014067          395 NHYHLERFYWLMCILGGLNFLHFLFWAA  422 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~~~~~~  422 (431)
                           ...|+..++++++..++..+..+
T Consensus       145 -----~~~~~~~~~~~~~~~~~~~~~~~  167 (377)
T PRK11102        145 -----HAIFWVLALAAILAAALVFFFIP  167 (377)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence                 13466666666666554444333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.67  E-value=0.0019  Score=65.18  Aligned_cols=115  Identities=13%  Similarity=0.031  Sum_probs=90.0

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .+++.+...+..++..|+..++.+++.+|           +-+.+|+++.+++.+......                  .
T Consensus        40 ~g~l~s~~~~g~~i~~~~~g~l~~r~G~r-----------~~~~~g~~l~~~g~~l~~~~~------------------~   90 (410)
T TIGR00885        40 AALVQSAFYGGYFIMAIPAAIFMKKLSYK-----------AGILLGLFLYALGAFLFWPAA------------------E   90 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHH------------------h
Confidence            35677888888888888888766544332           447788888888876654332                  0


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ..++++++...++.++|.-+..+....++.+.+|++.++..+++.....++|..+++.+...+.
T Consensus        91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1356677788899999999999999999999999999999999999999999999998887663

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03699 putative transporter; Provisional

Probab=97.65  E-value=0.0019  Score=64.68  Aligned_cols=110  Identities=14%  Similarity=0.057  Sum_probs=82.4

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++..+...+...+..++.+++.+++.+|           +-+..+.++.+++.+..++.                     
T Consensus        45 g~~~s~~~~~~~i~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~l~~~~---------------------   92 (394)
T PRK03699         45 SNTFTFLNAGILISIFLNAWLMEIIPLK-----------RQLIFGFALMILAVAGLMFS---------------------   92 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence            3455666667777777777776655443           23556666666666655543                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV  376 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~  376 (431)
                      .+.++++...++.++++....+.....+.+..|++.|+..++......++|..+++.+.+.+
T Consensus        93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699         93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            24566777889999999988888889999999999999999999888889988888877654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.65  E-value=0.00049  Score=73.41  Aligned_cols=134  Identities=16%  Similarity=0.052  Sum_probs=93.7

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH--HHhhh-------h--
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIK--RKRVA-------V--  302 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~--~~~~~-------~--  302 (431)
                      .+++.+.+-+.-.+..++..++-    .|.       ...+-+++|+++.+++.+..++.+-.  +|...       +  
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~~~----~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSYFG----TKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHHhh----ccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            35677777777777777776643    332       33356889999999999888776421  11000       0  


Q ss_pred             --hcCC-C-C-------------CCCCc--chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHH
Q 014067          303 --NSGL-V-N-------------SSEPL--PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLA  363 (431)
Q Consensus       303 --~~g~-~-~-------------~~~~~--~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~  363 (431)
                        +..+ . +             ..+..  ...+..++..-+++|+|+....+.+..++.+..|++.|+.++|++.....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence              0000 0 0             00000  11344566788999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhcc
Q 014067          364 MGYYFSTVLVSIVNN  378 (431)
Q Consensus       364 iG~~l~~~l~~~~~~  378 (431)
                      +|..+|..+++.+..
T Consensus       219 iG~~lG~llgg~l~~  233 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQ  233 (633)
T ss_pred             hhhHHHHHHHHHHHh
Confidence            999999998887653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.62  E-value=0.00064  Score=69.62  Aligned_cols=113  Identities=16%  Similarity=0.077  Sum_probs=84.1

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +.+.+...+..++..++.+++.+++.+|           +-+.+++++.+++.+......                   .
T Consensus        79 g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~-------------------~  128 (465)
T TIGR00894        79 GLILSSHFYGQIIIQIPVGYLAGKYVFK-----------WSIGIGMFLSSVISIVIPWAA-------------------G  128 (465)
T ss_pred             hHHHHHHHHHHHHHHcchHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHHHH-------------------H
Confidence            3445555566667777777665544332           235566666666555443321                   1


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+.++++...+++|++|....|.....+.+..|++.|+.++|++.....+|..+++.+.+.+.
T Consensus       129 ~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~  191 (465)
T TIGR00894       129 GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC  191 (465)
T ss_pred             cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678888999999999999999999999999999999999999999999999999987765

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.62  E-value=0.00093  Score=68.88  Aligned_cols=142  Identities=11%  Similarity=0.006  Sum_probs=98.6

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHH-HhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIP-FARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~p-l~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      +...+...+...+..++.+++-++ +.+|           +-+.+|.++.+++.+.+++..                   
T Consensus        51 g~~~~~~~~~~~~~~~~~G~laDr~~G~~-----------~~l~~~~~~~~~g~~~~~~~~-------------------  100 (475)
T TIGR00924        51 FIIFGAYSALVYLLTSVGWWFGDRVWGTK-----------KTMVLGGIVLMLGHFMLAMSI-------------------  100 (475)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhcchH-----------HHHHHHHHHHHHHHHHHHhcc-------------------
Confidence            344555555666666666666554 3332           336778888888777665531                   


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCch---hhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS---MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLF  390 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~---~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~  390 (431)
                        +.+++....++.++|+-+..|....++.++.|++   .|+...++++...++|..+|+.+++.+....      +|  
T Consensus       101 --~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~------g~--  170 (475)
T TIGR00924       101 --YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY------GY--  170 (475)
T ss_pred             --cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc------Ch--
Confidence              3445566778899999999999999999998875   4888999999999999999999988775211      22  


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 014067          391 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  425 (431)
Q Consensus       391 ~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~  425 (431)
                               ..-|.+.++.++++.+++.+..++++
T Consensus       171 ---------~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       171 ---------HVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence                     24466666666667777766666553

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.61  E-value=0.0066  Score=60.03  Aligned_cols=71  Identities=13%  Similarity=0.119  Sum_probs=57.5

Q ss_pred             cccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccC---chhHHHHHHHHHHHHHHHHHhcC
Q 014067           16 IKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG---WQWGFGISTATILLSIPIFLLGS   92 (431)
Q Consensus        16 ~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g---~~~~F~i~~i~~~i~~iif~~~~   92 (431)
                      .....-+.++..|++++      +..+..++= .-|+|..+...+++.+....|   |+.+-.+..+.+++..+.++++.
T Consensus       121 sFav~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~  193 (417)
T COG2223         121 SFAVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGM  193 (417)
T ss_pred             eehcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555677888997663      456677666 889999999999999999899   99998899999999888887765


Q ss_pred             c
Q 014067           93 P   93 (431)
Q Consensus        93 ~   93 (431)
                      +
T Consensus       194 ~  194 (417)
T COG2223         194 N  194 (417)
T ss_pred             C
Confidence            4

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.60  E-value=0.0031  Score=63.53  Aligned_cols=111  Identities=14%  Similarity=0.144  Sum_probs=86.9

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++..+...+..++..|+.+++.++..+|           +-+.++.++.+++.+..++.                     
T Consensus        56 ~~~~~~~~~~~~l~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~---------------------  103 (426)
T PRK12307         56 AFLATAAFIGRPFGGALFGLLADKFGRK-----------PLMMWSIVAYSVGTGLSGLA---------------------  103 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence            4556667777777888777766543322           34667788777777766654                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+...+.
T Consensus       104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~  166 (426)
T PRK12307        104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA  166 (426)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence            246677788899999999999999999999999999999999999999999999988776653

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.60  E-value=0.0011  Score=66.24  Aligned_cols=120  Identities=12%  Similarity=0.040  Sum_probs=87.9

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .++..+...+...+..|+.+++.++..||           +-+..+.++.+++.+.+++....     .  .      ..
T Consensus        53 ~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~-----~--~------~~  108 (399)
T PRK05122         53 AGLVISLQYLATLLSRPHAGRYADTLGPK-----------KAVVFGLCGCALSGLLYLLAGLL-----A--A------WP  108 (399)
T ss_pred             HHHHHHHHHHHHHHhchhhHhHHhccCCc-----------chHHHHHHHHHHHHHHHHHhhhh-----h--c------cc
Confidence            35667777788888889988877655433           33566666666655444433210     0  0      01


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ..++++++...++.|+++....+.....+.+..|++.|+..+|+......+|..+|+.++..+.
T Consensus       109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  172 (399)
T PRK05122        109 VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY  172 (399)
T ss_pred             hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence            2356678888899999999999999999999999999999999998888888888888877664

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.57  E-value=0.00096  Score=69.01  Aligned_cols=103  Identities=14%  Similarity=0.084  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHH-HhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHH
Q 014067          244 FILILAPVYNHVIIP-FARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL  322 (431)
Q Consensus       244 ~iil~~pl~~~~~~p-l~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~  322 (431)
                      ...++.|+.+++-++ +.+|           +-+.+|.++.+++.+.+++..                    .....+..
T Consensus        62 ~~~~~~~~~G~laDr~~G~r-----------~~~~~g~~~~~~g~~~~~~~~--------------------~~~~ll~~  110 (489)
T PRK10207         62 LVYGLISIGGYVGDHLLGTK-----------RTIVLGAIVLAIGYFMTGMSL--------------------LKPDLIFI  110 (489)
T ss_pred             HHHHHHhhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHHhc--------------------cchhHHHH
Confidence            344555566665544 3332           457888888888887776642                    00111335


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCch--hhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          323 QYLFLGSADLFTLAGMMEFFFTDAPLS--MRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       323 ~~~l~~igE~~~~~~~~~~~~~~aP~~--~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ..+++++|+-+..|....++.++-|++  .|+...+++++..++|..+|+.+++++.
T Consensus       111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~  167 (489)
T PRK10207        111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA  167 (489)
T ss_pred             HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            678899999999999999999999887  4577899999999999999999988875

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.56  E-value=0.0017  Score=64.60  Aligned_cols=90  Identities=12%  Similarity=0.087  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCC
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  395 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n  395 (431)
                      ++++++...++.|+||-. .+.....+.+..|++.|++++|++.....+|..+++.++..+...      .+|=      
T Consensus        78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gWr------  144 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGLQ------  144 (368)
T ss_pred             cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cchH------
Confidence            678899999999999986 455566678899999999999999999999999999988887531      2453      


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067          396 HYHLERFYWLMCILGGLNFLHFLFWAAR  423 (431)
Q Consensus       396 ~~~l~~~f~~la~l~~v~~i~~~~~~~~  423 (431)
                           ..|...++++++..++..+..++
T Consensus       145 -----~~f~~~~~l~~~~~~~~~~~lp~  167 (368)
T TIGR00903       145 -----LLIIPIAAVAAAGIILVLAALPA  167 (368)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHcCC
Confidence                 45666777777766655555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.55  E-value=0.0013  Score=64.42  Aligned_cols=137  Identities=17%  Similarity=0.109  Sum_probs=94.1

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++..+...+...+..|+.+++.++..||           +-+.+|.++.+++....++.+                    
T Consensus        41 g~~~s~~~~~~~~~~~~~G~l~d~~G~r-----------~~~~~~~~~~~~~~~~~~~~~--------------------   89 (377)
T TIGR00890        41 AIWFTLLLIGLAMSMPVGGLLADKFGPR-----------AVAMLGGILYGLGFTFYAIAD--------------------   89 (377)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHcCcc-----------chhHHhHHHHHHHHHHHHHHH--------------------
Confidence            5566777777888888888877655443           235667777777776666542                    


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                       +.+.+....++.++++....+.....+.+..|+ .|+.++|++....++|..+++.+...+...      .+|      
T Consensus        90 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~------  155 (377)
T TIGR00890        90 -SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINL------EGV------  155 (377)
T ss_pred             -HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhc------ccH------
Confidence             455666777899999988887877888777775 699999999999999988766555443210      122      


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHh
Q 014067          395 NHYHLERFYWLMCILGGLNFLHFLFWA  421 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~~~~~  421 (431)
                           ...|+..++++++..+..++..
T Consensus       156 -----~~~f~~~~~~~~~~~~~~~~~~  177 (377)
T TIGR00890       156 -----PAAFIYMGIIFLLVIVLGAFLI  177 (377)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhe
Confidence                 2446666776666655544443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.54  E-value=0.0033  Score=62.73  Aligned_cols=111  Identities=10%  Similarity=-0.017  Sum_probs=80.9

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++..+...+..++..|+.+.+.+++.||           +-+.++.++.+++.+.....                     
T Consensus        46 ~~~~~~~~~~~~~~~~~~G~l~Dr~grr-----------~~~~~~~~~~~~~~~~~~~~---------------------   93 (394)
T PRK11652         46 QAVMAAYLLTYGLSQLFYGPLSDRVGRR-----------PVILVGMSIFILGTLVALFA---------------------   93 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhcCCh-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence            3445666666777777777766544322           23556666666666554432                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+.++++...++.+++.....+...++..+..|++.++..++.+.+...+|..+++.+.+.+.
T Consensus        94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  156 (394)
T PRK11652         94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT  156 (394)
T ss_pred             ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            245667778889999888888888888989999999999999999999999999988887764

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.53  E-value=0.025  Score=57.54  Aligned_cols=81  Identities=10%  Similarity=0.025  Sum_probs=62.9

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHH---HHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG---IST   78 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~---i~~   78 (431)
                      +.+..++.|+++|..- +....+..+++++      +|.++.+++..+.++|.++++++++++ .++||+.-+.   ++.
T Consensus       118 L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl  189 (511)
T TIGR00806       118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISL  189 (511)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHH
Confidence            4567889999999999 9999999999744      367788999999999999999999995 4678885443   445


Q ss_pred             HHHHHHHHHHHh
Q 014067           79 ATILLSIPIFLL   90 (431)
Q Consensus        79 i~~~i~~iif~~   90 (431)
                      ..+.+++++-++
T Consensus       190 ~s~~~a~~~a~~  201 (511)
T TIGR00806       190 VFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHHHh
Confidence            555555544333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00898 2A0119 cation transport protein

Probab=97.50  E-value=0.00097  Score=69.01  Aligned_cols=132  Identities=13%  Similarity=0.096  Sum_probs=97.1

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++.+++..+..++..++.+++.+++.||           +-+.++.++.+++.+..++.                     
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr-----------~~~~~~~~~~~i~~~~~~~~---------------------  177 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYLSDRFGRK-----------KVLLLSTLVTAVSGVLTAFS---------------------  177 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccch-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence            4567777778888888888776554433           22555666666655554443                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                      .++++++...++.|++.....+....++.+..|++.|+..++++....++|..+++.+..++.         +|-     
T Consensus       178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~wr-----  243 (505)
T TIGR00898       178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DWR-----  243 (505)
T ss_pred             ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HHH-----
Confidence            356778888999999999999999999999999999999999999999999999888876553         242     


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHH
Q 014067          395 NHYHLERFYWLMCILGGLNFLHFL  418 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~~  418 (431)
                            ..|+..++.+++..+.++
T Consensus       244 ------~~~~~~~i~~~~~~~~~~  261 (505)
T TIGR00898       244 ------WLQLAVSLPTFLFFLLSW  261 (505)
T ss_pred             ------HHHHHHHHHHHHHHHHHH
Confidence                  446666666665555543

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.47  E-value=0.0054  Score=63.19  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=84.4

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+..++..|+.+++.++..+|           +-+.++.++.+++.+.+++.                     
T Consensus        58 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------  105 (496)
T PRK03893         58 ASLISAAFISRWFGGLLLGAMGDRYGRR-----------LAMVISIVLFSVGTLACGFA---------------------  105 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence            3455555566666677777665544322           23556777777776665553                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+.++++...++.|++.....+....++.+..|++.|+..+|++....++|+.+++.+...+.
T Consensus       106 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893        106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            256677888899999999999999999999999999999999999999999999998887764

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.46  E-value=0.001  Score=67.62  Aligned_cols=85  Identities=20%  Similarity=0.087  Sum_probs=64.7

Q ss_pred             HHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHHH
Q 014067            4 AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL   83 (431)
Q Consensus         4 ~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~i   83 (431)
                      +.+.+..+|.....-...+++.+.-+++. ++   +...-++.|.+.++|++++..+.|++.++.+++..|.+.++.-.+
T Consensus        91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p-~~---~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l  166 (433)
T PF03092_consen   91 VLLFLASFGYAFADVAADALVVELARREP-ES---RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLL  166 (433)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcCC-ch---hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHH
Confidence            44566778888888888888888776553 22   344566779999999999999999999999999999998877776


Q ss_pred             HHHHHHhcC
Q 014067           84 SIPIFLLGS   92 (431)
Q Consensus        84 ~~iif~~~~   92 (431)
                      ..+..++..
T Consensus       167 ~~~~~~~~~  175 (433)
T PF03092_consen  167 MLIVALFLL  175 (433)
T ss_pred             HHHHHHHhh
Confidence            655444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.45  E-value=0.004  Score=63.63  Aligned_cols=107  Identities=11%  Similarity=-0.083  Sum_probs=75.5

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      +..+...+...+..|+.+++.++..+|           +-+.+|.++.+++.+..++...                 ...
T Consensus        67 ~~~~~~~i~~~~~~~~~G~l~Dr~g~k-----------~~l~~~~~~~~i~~~~~~~~~~-----------------~~~  118 (452)
T PRK11273         67 FALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPW-----------------ATS  118 (452)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhccCCc-----------hhHHHHHHHHHHHHHHHHhhhc-----------------ccc
Confidence            345555666667777777765444322           3366777777777776665420                 012


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhh
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFST  370 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~  370 (431)
                      ++++++...++.++++....|.....+.+..|++.|+..+|+++....+|..+.+
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  173 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPP  173 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHH
Confidence            4556677788999999888887778888999999999999999998888875433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.45  E-value=0.0061  Score=62.46  Aligned_cols=122  Identities=11%  Similarity=0.004  Sum_probs=85.1

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      +..+...+..++.+++.+++.+++.||           +-+.++.++.+++.+..++.+......         ......
T Consensus        59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr-----------~~~~~~~~l~~i~~~~~~~~~~~~~~~---------~~~~~~  118 (479)
T PRK10077         59 FCVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISALGSAWPEFGFTSI---------GPDNTG  118 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHhhccccccc---------cccchh
Confidence            445566666777778877776655444           336667777766666555432100000         000122


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+++++...++.|++.-...|....++.+..|++.||.++|++.....+|..+++.+.....
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  180 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA  180 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567788899999999999999999999999999999999999999999998877665443

>PRK11043 putative transporter; Provisional

Probab=97.44  E-value=0.0051  Score=61.57  Aligned_cols=111  Identities=8%  Similarity=-0.044  Sum_probs=79.5

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++..++..+...+..|+.+++.++..+|           +-+..+.++.+++.+..++.                     
T Consensus        44 g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   91 (401)
T PRK11043         44 SASLSLFLAGFALGQLLWGPLSDRYGRK-----------PVLLAGLSLFALGSLGMLWV---------------------   91 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHhhcCCc-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            4455666666667777777665443322           33556666666666555443                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+.++++...++.+++.....+...+.+.+..|++.++...+......++|..+++.+++.+.
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  154 (401)
T PRK11043         92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL  154 (401)
T ss_pred             cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            245667777889999887777888889999999999998888888888888888888877664

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.44  E-value=0.0032  Score=64.08  Aligned_cols=144  Identities=13%  Similarity=-0.013  Sum_probs=93.9

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++..++..+...+..++.+++.+++.+|           +-+.+|.++.+++.+.++....                 ..
T Consensus        64 g~~~~~~~~~~~~~~~~~G~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~~-----------------~~  115 (438)
T TIGR00712        64 GFALSAISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILSAAVMLLMGFVPW-----------------AT  115 (438)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCCc-----------eehHHHHHHHHHHHHHHhcccc-----------------cc
Confidence            4455566666667777777765433222           2355677777776665544310                 01


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                      .+.+.+....++.++++....+...+.+.+..|++.||..+|+++...++|..+++.+........     .+|-     
T Consensus       116 ~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~w~-----  185 (438)
T TIGR00712       116 SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-----NDWH-----  185 (438)
T ss_pred             chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh-----hhhH-----
Confidence            244455667888999998888888899999999999999999999999999998887765432111     1232     


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014067          395 NHYHLERFYWLMCILGGLNFLHFLFWAA  422 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~~~~~~  422 (431)
                            ..|++.++++++..++..+..|
T Consensus       186 ------~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       186 ------AALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHhcc
Confidence                  3466667776666554444443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.41  E-value=0.0019  Score=64.77  Aligned_cols=108  Identities=15%  Similarity=0.079  Sum_probs=82.9

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+...++.|+.+++.+++.||           +-+.++.++.+++.+.+++..                    
T Consensus        41 ~~~~~~~~l~~~l~~~~~G~laDr~grr-----------~vl~~~~~~~~~~~~~~~~~~--------------------   89 (393)
T PRK11195         41 PLLQMFFVLAYIVLAPFVGAFADSFPKG-----------RVMFIANGIKLLGCLLMLFGI--------------------   89 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhccCCc-----------hhhHHHHHHHHHHHHHHHHHH--------------------
Confidence            5666777788888899998876554433           235566666655544433321                    


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                       +.   +...+++|+++.+..|...+.+.+..|++.|+.++|++.....+|..+|+.+++++.
T Consensus        90 -~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         90 -HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             -HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11   345688999999999999999999999999999999999999999999999988874

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.41  E-value=0.013  Score=59.58  Aligned_cols=100  Identities=14%  Similarity=0.097  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHH
Q 014067          244 FILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQ  323 (431)
Q Consensus       244 ~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~  323 (431)
                      .-.++..+.+++.+++           .+.+-+.++++.-++..+..++.                     .|++.+...
T Consensus        74 sYal~qIp~GlLaDrl-----------G~K~vL~l~~l~Wsl~t~L~~fa---------------------~Sl~~L~i~  121 (511)
T TIGR00806        74 SHLAVLVPVFLLTDYL-----------RYKPVLVLQALSFVCVWLLLLLG---------------------TSVWHMQLM  121 (511)
T ss_pred             HHHHHHHHHHHHHHHh-----------CchHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHH
Confidence            3445555555554433           23344667777666666666664                     357788899


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 014067          324 YLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV  376 (431)
Q Consensus       324 ~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~  376 (431)
                      .++.|++|.... +...++++..|++.|++++|++.....+|..+++.+++++
T Consensus       122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999 9999999999999999999999999999999999999884

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.40  E-value=0.038  Score=58.08  Aligned_cols=82  Identities=16%  Similarity=0.210  Sum_probs=51.4

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +..|.++.++|.|... .....++|..+.+      .|..++.+..+..=+...+++.++..+..+-+|++.|++.++..
T Consensus       134 ~iag~~l~GvgaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~  206 (599)
T PF06609_consen  134 FIAGMVLYGVGAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS  206 (599)
T ss_pred             HHHHHHHHHHhhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence            4578889999977765 4455678888543      23223333333222223345555555555679999999999988


Q ss_pred             HHHHHHHHh
Q 014067           82 LLSIPIFLL   90 (431)
Q Consensus        82 ~i~~iif~~   90 (431)
                      .++++...+
T Consensus       207 ~i~~vl~~~  215 (599)
T PF06609_consen  207 GIALVLIFF  215 (599)
T ss_pred             HHHHHHHHH
Confidence            888765444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.40  E-value=0.031  Score=55.22  Aligned_cols=59  Identities=17%  Similarity=0.160  Sum_probs=48.0

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED   66 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~   66 (431)
                      |..++.+++.|.|..+...++++++.-+++...   +|   .|.--....+|++++|.+++++..
T Consensus       107 FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~---~r---lnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         107 FLVALFILASGIGLLETAANPYVTLLGKPESAA---FR---LNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HHHHHHHHHhhhHHHHhccchHHHHhCCchhHH---HH---HHHHHHhhhhHHHHHHHHHHHHHH
Confidence            677889999999999999999999998865322   22   455566678999999999998866

>TIGR00901 2A0125 AmpG-related permease

Probab=97.38  E-value=0.0073  Score=59.32  Aligned_cols=84  Identities=6%  Similarity=0.010  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHH
Q 014067          276 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLAT  355 (431)
Q Consensus       276 i~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~  355 (431)
                      +..+.++.+++++.+++..                  ...+.+++...+++.++.-.+..|...+++.+..|++.|+...
T Consensus        60 l~~~~~~~~~~~~~l~~~~------------------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~  121 (356)
T TIGR00901        60 LVLTQVLLLSLLLILSFLV------------------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGS  121 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCC------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHH
Confidence            3456666666655554432                  1235666777777888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhc
Q 014067          356 SLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       356 gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      |+.....++|..+++.++..+.
T Consensus       122 ~~~~~~~~~G~~~~~~l~~~l~  143 (356)
T TIGR00901       122 TIYIVGYRAGMLLSGSLALVLA  143 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998887665

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.38  E-value=0.0019  Score=65.03  Aligned_cols=117  Identities=13%  Similarity=-0.032  Sum_probs=85.6

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .+++.+...+..++..|+.+++.+++.+|           +-+.++.++.++++...+....     .           .
T Consensus        54 ~g~~~~~~~l~~~~~~~~~G~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~~~-----~-----------~  106 (417)
T PRK10489         54 VGLSVTLTGGAMFIGLMVGGVLADRYDRK-----------KLILLARGTCGLGFIGLALNAF-----L-----------P  106 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhcCCc-----------eEEEehHHHHHHHHHHHHHHHH-----c-----------C
Confidence            35667777778888888888776554333           2244566666666655443210     0           0


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ..+++++....++.+++..+..+...+.+.+..|++.++..+|++....++|..+|+.+++.+.
T Consensus       107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~  170 (417)
T PRK10489        107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI  170 (417)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence            1345667777888999998888999999999999999999999999999999999998887764

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.36  E-value=0.0031  Score=64.57  Aligned_cols=136  Identities=13%  Similarity=0.076  Sum_probs=87.2

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++..+...+...+..|+.+++.+++.+|           +-+..++++.+++.+.+++..                    
T Consensus        57 ~~~~s~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~--------------------  105 (455)
T TIGR00892        57 AWISSIMLAVLYAGGPISSILVNRFGCR-----------PVVIAGGLLASLGMILASFSS--------------------  105 (455)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHcCch-----------HHHHhhHHHHHHHHHHHHHhh--------------------
Confidence            4445555555566777777665443222           345667777776666655542                    


Q ss_pred             hhHHHHHH-HHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCC
Q 014067          315 ITFLWVAL-QYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  393 (431)
Q Consensus       315 ~s~~wli~-~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~  393 (431)
                       +.+.+.. ..++.|+++....+.....+.+..| +.|+..+|++.....+|..+++.+.+.+....      +|-    
T Consensus       106 -~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------gwr----  173 (455)
T TIGR00892       106 -NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------GWR----  173 (455)
T ss_pred             -hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------ChH----
Confidence             2333332 3467788888766666677777766 78999999999999999999988877664211      232    


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHH
Q 014067          394 LNHYHLERFYWLMCILGGLNFLHFLFW  420 (431)
Q Consensus       394 ~n~~~l~~~f~~la~l~~v~~i~~~~~  420 (431)
                             ..|++.++++++..+..+++
T Consensus       174 -------~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       174 -------GSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHh
Confidence                   45777777777665554444

>PTZ00207 hypothetical protein; Provisional

Probab=97.34  E-value=0.0089  Score=62.87  Aligned_cols=119  Identities=6%  Similarity=0.023  Sum_probs=86.1

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhh
Q 014067          272 HLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMR  351 (431)
Q Consensus       272 ~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~  351 (431)
                      +.+-+.+|.++.+++.+..++...         +      ....+++.+....++.|+|+....+.....+.+..| +.|
T Consensus        90 ~R~vllig~ll~~iG~ll~ala~~---------~------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~R  153 (591)
T PTZ00207         90 PRPIFVLSMTVFCLGTLLFALTFQ---------E------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNR  153 (591)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhc---------c------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhh
Confidence            334577899999999888777521         0      012467777888999999999988888888888887 678


Q ss_pred             hHHHHHHHHHHHHHHHHhh-hhhhhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 014067          352 SLATSLSWASLAMGYYFST-VLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  425 (431)
Q Consensus       352 g~~~gl~~l~~~iG~~l~~-~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~  425 (431)
                      |.++|++....++|+.+.+ +...++.              +     +...+|++++++.++..++.....|..+
T Consensus       154 G~a~Gi~~~~~gLGsaI~~~l~~~l~~--------------~-----~~~~~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        154 GAVVAIMKTFTGLGSAILGSIQLAFFS--------------D-----NTSAYFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-----hHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence            9999999999999997644 4444432              1     1235677788888777777666665554

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.34  E-value=0.013  Score=60.68  Aligned_cols=132  Identities=17%  Similarity=0.202  Sum_probs=90.8

Q ss_pred             HHHHHHHHHhhhccCCCCCCCchhh-hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHh
Q 014067          251 VYNHVIIPFARKVTKTEMGITHLQR-IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGS  329 (431)
Q Consensus       251 l~~~~~~pl~~~~~~~~~~~s~~~k-i~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~i  329 (431)
                      +...+|-|+.+|.+...  ....++ +.++.++.+++...+++.+                  ...+.+|+....++.++
T Consensus        60 ~~~~l~gpl~Dr~~~~~--~Grrr~~ll~~~i~~~~~~~~~a~~~------------------~~~~l~~l~~~~~l~~~  119 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPF--LGRRRGWLLATQLLLLVAIAAMGFLE------------------PGTQLRWLAALAVVIAF  119 (491)
T ss_pred             HHHHHHHHHHHcccccC--CCCchHHHHHHHHHHHHHHHHHHHcC------------------CcchHHHHHHHHHHHHH
Confidence            56666777777742110  111122 5566676767766665542                  12457788888889998


Q ss_pred             hhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHH
Q 014067          330 ADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCIL  409 (431)
Q Consensus       330 gE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l  409 (431)
                      +-....+...+++.+..|++.|+..+|+......+|..+++.+...+....     .+|-           ..|++.+++
T Consensus       120 ~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~-----~GWr-----------~~f~i~a~l  183 (491)
T PRK11010        120 CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY-----LGWQ-----------GMYWLMAAL  183 (491)
T ss_pred             HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCHH-----------HHHHHHHHH
Confidence            888888999999999999999999999999999999999988877664210     1343           346667776


Q ss_pred             HHHHHHHHH
Q 014067          410 GGLNFLHFL  418 (431)
Q Consensus       410 ~~v~~i~~~  418 (431)
                      +++..+..+
T Consensus       184 ~ll~~l~~~  192 (491)
T PRK11010        184 LIPCIIATL  192 (491)
T ss_pred             HHHHHHHHH
Confidence            666654433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.32  E-value=0.0048  Score=64.03  Aligned_cols=116  Identities=16%  Similarity=0.104  Sum_probs=79.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchh--h
Q 014067          274 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM--R  351 (431)
Q Consensus       274 ~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~--~  351 (431)
                      +-+.+|.++.+++...+++..                    .+.+++....+++++|.-+..|....++.++-|++.  +
T Consensus        89 ~~~~~g~~~~~ig~~l~~~~~--------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~  148 (500)
T PRK09584         89 RVIMLGAIVLAIGYALVAWSG--------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRL  148 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhh
Confidence            346678887777766655431                    123345566788899999888888899999887643  4


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014067          352 SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY  426 (431)
Q Consensus       352 g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~  426 (431)
                      +..+++++...++|..+++.+.+.+.+..      +|           .+-|.+.++..+++.+.+++..++++.
T Consensus       149 ~~~~~~~~~~~~iG~~~gp~i~g~l~~~~------g~-----------~~~F~i~~i~~~i~~i~~~~~~~~~~~  206 (500)
T PRK09584        149 DGAFTMYYMSINIGSFFSMLATPWLAAKY------GW-----------SVAFALSVVGMLITVVNFAFCQRWVKQ  206 (500)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhh------CH-----------HHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence            45788889999999999999988775211      22           234666666666666667666655543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.30  E-value=0.01  Score=60.44  Aligned_cols=151  Identities=13%  Similarity=0.109  Sum_probs=98.8

Q ss_pred             CCcccCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 014067          228 GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV  307 (431)
Q Consensus       228 gg~~ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~  307 (431)
                      ++.++-.+...+.+-..=|++-++..+++    +|.       ...+-|.+|+...++=++....++             
T Consensus       402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI----~ki-------GHv~v~~lgLa~~~~Rf~~~S~L~-------------  457 (618)
T KOG3762|consen  402 GGIKTLFGVVSALCHAGEILFYFFSFKLI----EKI-------GHVNVMYLGLACNVGRFLYYSYLQ-------------  457 (618)
T ss_pred             CCcceeeeehhhhhccchHHHHHHHHHHH----HHh-------cccceeeehhhHHHHHHHHHHHhc-------------
Confidence            33333344445555555555555555544    443       223446677766666555554442             


Q ss_pred             CCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHH-HHHHHHhhhhhhhhccccccCCCC
Q 014067          308 NSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASL-AMGYYFSTVLVSIVNNITSTYRHT  386 (431)
Q Consensus       308 ~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~-~iG~~l~~~l~~~~~~~~~~~~~~  386 (431)
                              |+|..+|.-+++++.-.+++.+..+++...||++++..++|+.-... ++|.-+|+++++.+....      
T Consensus       458 --------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f------  523 (618)
T KOG3762|consen  458 --------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF------  523 (618)
T ss_pred             --------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee------
Confidence                    55667788899999999999999999999999999999999887654 666667766666654211      


Q ss_pred             CCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 014067          387 PWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS  427 (431)
Q Consensus       387 ~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~~  427 (431)
                       |          .-.+|...++-+++.++++..+-+..++|
T Consensus       524 -g----------~~ttf~~~giAcl~~l~~~~~iq~~l~~~  553 (618)
T KOG3762|consen  524 -G----------ARTTFRIFGIACLVTLALFISIQLLLKRR  553 (618)
T ss_pred             -h----------hHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence             1          12356777777777777766666555543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.30  E-value=0.0005  Score=56.95  Aligned_cols=82  Identities=13%  Similarity=0.156  Sum_probs=68.1

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL   82 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~   82 (431)
                      ++...+.+++.+...+...+...|.++++      +|....++.+.+.++|..+++.+.+++.+..+|+..|.+.++..+
T Consensus        55 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (141)
T TIGR00880        55 IIARFLQGFGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL  128 (141)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHH
Confidence            44567788888888899999999998755      356788999999999999999999999998999999998888777


Q ss_pred             HHHHHHHh
Q 014067           83 LSIPIFLL   90 (431)
Q Consensus        83 i~~iif~~   90 (431)
                      ++.+...+
T Consensus       129 ~~~~~~~~  136 (141)
T TIGR00880       129 AAFILLAF  136 (141)
T ss_pred             HHHHHHhh
Confidence            77665543

>TIGR00897 2A0118 polyol permease family

Probab=97.25  E-value=0.0092  Score=59.91  Aligned_cols=115  Identities=18%  Similarity=0.118  Sum_probs=79.8

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .++..+...+...++.|+.+++.++..+|           +-+..|.++.+++.+.......                 .
T Consensus        50 ~g~~~~~~~~~~~i~~~~~g~l~dr~g~k-----------~~l~~~~~~~~~~~~~~~~~~~-----------------~  101 (402)
T TIGR00897        50 SASAFTLYGIAAAISAWISGVVAEIIGPL-----------KTMMIGLLLWCVGHAAFIVFGL-----------------G  101 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHhc-----------------c
Confidence            34556667777777888887766544332           3356677777766544322210                 0


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHH-HHhhhhhhhh
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGY-YFSTVLVSIV  376 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~-~l~~~l~~~~  376 (431)
                      ..+++.++..+++.+++.....+.....+.+..|++.|+..+|++....++|. .+++.+.+..
T Consensus       102 ~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l  165 (402)
T TIGR00897       102 HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA  165 (402)
T ss_pred             CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            12455566778889999877777777888889999999999999999999986 5777776554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.24  E-value=0.0024  Score=72.95  Aligned_cols=115  Identities=14%  Similarity=0.034  Sum_probs=83.1

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++..++..+..+++.|+.+++.+++.||           +-+.++.++.+++.+...+...                  .
T Consensus        50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk-----------~~l~~~~~~~~~~~~~~~~~~~------------------~  100 (1146)
T PRK08633         50 AIVNALFLLPFLLLSSPAGFLADKFSKN-----------RVIRIVKLFEVGLTLLIVLAYY------------------L  100 (1146)
T ss_pred             HHHHHHHHHHHHHHhhhHhhhcccccHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence            3444555566667777777766544333           2244455444444433333210                  1


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  378 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  378 (431)
                      .++++++...++.|++..+..|...+++.+..|++.|+.++|+.....++|..+|+.+++++..
T Consensus       101 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633        101 GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2467788889999999999999999999999999999999999999999999999999887753

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.22  E-value=0.018  Score=59.80  Aligned_cols=110  Identities=12%  Similarity=0.052  Sum_probs=78.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHH
Q 014067          275 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA  354 (431)
Q Consensus       275 ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~  354 (431)
                      -..++++..+++.++..+.                     .+.+-++..-++.|+..-...........+..+.+.-+-.
T Consensus       367 ~~~~~ll~~gl~~~~~p~~---------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a  425 (509)
T KOG2504|consen  367 LFLLTLLIAGLARLFLPFA---------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNA  425 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchH
Confidence            3556666666666444443                     2344555666777887777777766788888999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 014067          355 TSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWA  421 (431)
Q Consensus       355 ~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~  421 (431)
                      .|+..+..+++..+|+.+.+.+.+.++     .           ++..|...++..+++.+++++..
T Consensus       426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg-----~-----------Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  426 YGLLLLFQGIGALVGPPIAGLLYDITG-----N-----------YDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHhHHHHHcCcccceeeeeccC-----C-----------eeeehhhcChHHHHHHHHHHHhH
Confidence            999999999999999999887765442     1           23446667777777776666665

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.18  E-value=0.008  Score=61.92  Aligned_cols=95  Identities=15%  Similarity=0.168  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCC
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  395 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n  395 (431)
                      |.+-++...+++|+.|....|........-=.++.||..+|+|+...++|+.+|+++..-+....+.....+|=      
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~------  206 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWR------  206 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCce------
Confidence            45567778899999999999999999999999999999999999999999999999987653322111122342      


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHh
Q 014067          396 HYHLERFYWLMCILGGLNFLHFLFWA  421 (431)
Q Consensus       396 ~~~l~~~f~~la~l~~v~~i~~~~~~  421 (431)
                           +.|.+-|+++++.+++.+++.
T Consensus       207 -----~~FiI~G~i~~~~gi~~f~~l  227 (495)
T KOG2533|consen  207 -----WLFIIEGVITLVLGIVVFFFL  227 (495)
T ss_pred             -----eehhHHHHHHHHHHheEEEEe
Confidence                 558888888888876555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.18  E-value=0.0086  Score=58.95  Aligned_cols=140  Identities=9%  Similarity=-0.006  Sum_probs=85.1

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIG-TGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~-~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      +++.+...+..++..|+.+++.++..+|           +.+. .+.++.+++.+..+..                    
T Consensus        36 g~~~~~~~~~~~~~~~~~g~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~--------------------   84 (375)
T TIGR00899        36 GLFYTGSAIVGIAVSQLLATRSDYQGDR-----------KGLILFCCLLAALACLLFAWN--------------------   84 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCc-----------hHHHHHHHHHHHHHHHHHHhc--------------------
Confidence            3455666666777888877765433221           2333 3444444444443332                    


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHH--HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcC
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA--TSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG  391 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~--~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~  391 (431)
                       .++++++...++++.++....|...+...+..|++.|+..  .+......++|..+++.+++.+...      .+|-  
T Consensus        85 -~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~------~~~~--  155 (375)
T TIGR00899        85 -RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG------FGFT--  155 (375)
T ss_pred             -chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh------cccH--
Confidence             2445555556677777777788888888888888777643  5777777788888888887766421      1232  


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067          392 SNLNHYHLERFYWLMCILGGLNFLHFLFWAAR  423 (431)
Q Consensus       392 ~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~  423 (431)
                               ..|++.+.+.++..++.++..++
T Consensus       156 ---------~~f~~~~~~~~~~~~~~~~~~~~  178 (375)
T TIGR00899       156 ---------VMFLTAALAFVLCGVLVWLFLPS  178 (375)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHhCCC
Confidence                     34666666666666555554443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.17  E-value=0.0043  Score=70.96  Aligned_cols=63  Identities=8%  Similarity=-0.026  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .|+++++...+++|+++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+++++.
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~  168 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT  168 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            367888899999999999999999999999999999999999999999999999999999875

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.16  E-value=0.0063  Score=62.49  Aligned_cols=177  Identities=11%  Similarity=0.072  Sum_probs=102.4

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +....+.++..++.+|+.+++.++...|.++|    .+.  +..|.+..++++..++............   . ++....
T Consensus        42 ~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~--il~g~~~~~~~l~ll~~~~~~~~~~~~~---~-~~~~~~  111 (477)
T TIGR01301        42 SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPF--IAAGAALVAFAVILIGFAADIGHLFGDN---L-DKKTKP  111 (477)
T ss_pred             HHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHH--HHHHHHHHHHHHHHHHhCchhhhhcccc---c-cccchh
Confidence            45677888899999999999887644343322    111  3445677777777766643110000000   0 000012


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhh--hHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCc--
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMR--SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLF--  390 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~--g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~--  390 (431)
                      ..+++.+..+.+..++--...+..-+++.+.+|++.|  +...+......++|+.+|..++++......    -++..  
T Consensus       112 ~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~----~~~~~~~  187 (477)
T TIGR01301       112 RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI----FPFTKTE  187 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh----ccccccc
Confidence            2334445555555556666667778999999999876  578888889999999999998876421000    00000  


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 014067          391 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  425 (431)
Q Consensus       391 ~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~  425 (431)
                      +...-..+...-|.+-+++.+++.++-++..|.+.
T Consensus       188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            00111123445566666666777666666666654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.14  E-value=0.0099  Score=58.15  Aligned_cols=62  Identities=8%  Similarity=0.043  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 014067          319 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT  380 (431)
Q Consensus       319 wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~  380 (431)
                      .+.....+.++.-....+....++.+..|.+.||..+|+.....+++..+||++.+....+.
T Consensus       354 ~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws  415 (451)
T KOG2615|consen  354 VLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS  415 (451)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence            34556788889999999999999999999999999999999999999999999987765443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.05  E-value=0.017  Score=57.87  Aligned_cols=84  Identities=7%  Similarity=-0.097  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHH
Q 014067          276 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLAT  355 (431)
Q Consensus       276 i~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~  355 (431)
                      +.++.++.++++..+++.+                  ...+++++...+++.++......|...+++.+..|++.|+.+.
T Consensus        71 l~~~~~~~~l~~~~l~~~~------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~  132 (402)
T PRK11902         71 LLLTQVGLAASIAAMAFCP------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGA  132 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcC------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHH
Confidence            6666777777777665542                  0135666777777888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhc
Q 014067          356 SLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       356 gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ++.....++|..+++.+...+.
T Consensus       133 ~~~~~g~~~g~i~g~~l~~~l~  154 (402)
T PRK11902        133 AVKVLGYRLAMLVSGGLALWLA  154 (402)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH
Confidence            9999999999999988776654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.05  E-value=0.0089  Score=61.78  Aligned_cols=90  Identities=12%  Similarity=0.084  Sum_probs=69.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhH
Q 014067          274 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL  353 (431)
Q Consensus       274 ~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~  353 (431)
                      +-+.+++++.+++.+..++....-     .-|        ...+++++...+++|+++-...+....++.+..|++.||.
T Consensus        88 ~~l~~~~~l~~i~~~~~a~~~~~~-----~~g--------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~  154 (490)
T PRK10642         88 KILAITIVIMSISTFCIGLIPSYA-----TIG--------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGF  154 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHH-----HHH--------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcH
Confidence            457788888888888877764110     000        1122347888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhh
Q 014067          354 ATSLSWASLAMGYYFSTVLVSIV  376 (431)
Q Consensus       354 ~~gl~~l~~~iG~~l~~~l~~~~  376 (431)
                      +++++.....+|..+++.+..++
T Consensus       155 ~~~~~~~~~~~G~~lg~~~~~~~  177 (490)
T PRK10642        155 MGSWLDFGSIAGFVLGAGVVVLI  177 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888887766544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.01  E-value=0.0093  Score=61.85  Aligned_cols=116  Identities=16%  Similarity=0.077  Sum_probs=83.9

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      ++.+...+..++..++..++.+++.||           +-+.+++++..++.+.+++..        +.       ....
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr-----------~~~~~~~~~~~v~~~~~~~~~--------~~-------~~~~  113 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRK-----------RVYGMELIIMIIATVASGLSP--------GS-------SPKS  113 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccH-----------HHHHHHHHHHHHHHHHHHHcc--------Cc-------ccch
Confidence            345555556666777777666554443           224566666666655554431        00       0112


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      +.++++...++.|+++....+....++.+.+|++.||..++++.....+|..+++.+...+.
T Consensus       114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887       114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999988876543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=96.99  E-value=0.019  Score=59.08  Aligned_cols=105  Identities=13%  Similarity=0.023  Sum_probs=66.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHH
Q 014067          239 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFL  318 (431)
Q Consensus       239 ~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~  318 (431)
                      +...+..++..++.+++.+++.+|           +-+..+.++.+++.+..++..                     +.+
T Consensus        78 ~~~~~~~~~~~~~~G~l~dr~G~r-----------~~~~~~~~~~~~~~~~~~~~~---------------------s~~  125 (476)
T PLN00028         78 IASVSGSIFSRLAMGPVCDLYGPR-----------YGSAFLLMLTAPAVFCMSLVS---------------------SAT  125 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHhc---------------------CHH
Confidence            333444444555665554433222           335566776666666555531                     344


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 014067          319 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV  376 (431)
Q Consensus       319 wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~  376 (431)
                      .+....++.|+++.... .....+.+..|++.||..+|++.....+|..+++.+...+
T Consensus       126 ~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i  182 (476)
T PLN00028        126 GFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV  182 (476)
T ss_pred             HHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566788999987644 3456788999999999999999877777777666555443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.98  E-value=0.18  Score=52.40  Aligned_cols=80  Identities=19%  Similarity=0.281  Sum_probs=60.5

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc-cCchhHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGISTAT   80 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i~~i~   80 (431)
                      +++|+++.++|.|+..-.+.-.+++.-+++      .|...-+.+.+++++|.+++..+.....+. ++|+..+.+..+.
T Consensus       145 l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~  218 (513)
T KOG0254|consen  145 LIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIP  218 (513)
T ss_pred             HHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHH
Confidence            678999999999999977777777776533      466777888999999999996665555543 5899888777766


Q ss_pred             HHHHHHH
Q 014067           81 ILLSIPI   87 (431)
Q Consensus        81 ~~i~~ii   87 (431)
                      .++-.+.
T Consensus       219 ~~~~~~~  225 (513)
T KOG0254|consen  219 AVILALG  225 (513)
T ss_pred             HHHHHHH
Confidence            6655544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=96.97  E-value=0.0079  Score=59.63  Aligned_cols=115  Identities=15%  Similarity=0.115  Sum_probs=91.9

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCch
Q 014067          270 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS  349 (431)
Q Consensus       270 ~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~  349 (431)
                      .+|.+=|.+|++++++..+.+++.                     .|++.+...+++.|.-+-.-.|.....++.--|++
T Consensus        91 ~npr~fm~~gLilsai~nil~Gfs---------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~  149 (448)
T COG2271          91 SNPRYFMAFGLILSAIVNILFGFS---------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK  149 (448)
T ss_pred             CCCceeehHHHHHHHHHHHHHhhh---------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc
Confidence            466666999999999999998886                     36677778888888888888899999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhh--hhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014067          350 MRSLATSLSWASLAMGYYFSTVLV--SIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAA  422 (431)
Q Consensus       350 ~~g~~~gl~~l~~~iG~~l~~~l~--~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~  422 (431)
                      .||...++|+.+.++|+.+.+.+.  ..+..      ..+|-           .-|+.-++++++..++.++..|
T Consensus       150 eRG~~~siWn~shNiGGal~~~~~~la~~~~------~~~w~-----------~~f~~pgiiaiival~~~~~~r  207 (448)
T COG2271         150 ERGTWWSIWNTSHNIGGALAPLVALLAFFAF------HGGWR-----------AAFYFPGIIAIIVALILLFLLR  207 (448)
T ss_pred             ccCceEEEehhhhhcccchHHHHHHHHHHHh------ccchh-----------HHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999888  44431      01343           3467777777777776666554

>TIGR00896 CynX cyanate transporter

Probab=96.96  E-value=0.013  Score=57.59  Aligned_cols=110  Identities=16%  Similarity=0.191  Sum_probs=79.1

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .++..+++.+...+..|+.+++.+++.+|           +.+.+|.++.+++.+.. ..                    
T Consensus        37 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~-~~--------------------   84 (355)
T TIGR00896        37 AGLLTALPVLCFAVLAPLAPWLARRFGEE-----------RSVAAGLLLIAAGILIR-SA--------------------   84 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhCch-----------HHHHHHHHHHHHHHHHH-Hh--------------------
Confidence            35567788888888888888876554433           33566666666555443 21                    


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                       .+.++++...++.+++..+..+.....+.+..| +.|+..+|++.....+|..+++.+...+.
T Consensus        85 -~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  146 (355)
T TIGR00896        85 -PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA  146 (355)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             234556677888999998877777777777776 57999999999999999999888876653

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10133 L-fucose transporter; Provisional

Probab=96.94  E-value=0.013  Score=59.65  Aligned_cols=113  Identities=12%  Similarity=0.042  Sum_probs=84.8

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+...+..|+.+++.+++.+|           +-+.+|+++.+++.+......                  ..
T Consensus        64 gl~~~~~~~g~~i~~~~~g~l~dr~G~r-----------~~l~~g~~~~~~~~~l~~~~~------------------~a  114 (438)
T PRK10133         64 GLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAA------------------EI  114 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHH------------------hc
Confidence            4556666777778888887766554433           346778888888776543221                  01


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV  376 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~  376 (431)
                      .++++++...++.|+|.-...+....++.+..|++.+...++++....++|..+++.++..+
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888999999999999999999999988888887788998888899999998887654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.93  E-value=0.11  Score=51.79  Aligned_cols=87  Identities=17%  Similarity=0.223  Sum_probs=63.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhH
Q 014067          274 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL  353 (431)
Q Consensus       274 ~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~  353 (431)
                      +.+.+|+++..+..+...+.+                  .+..+ |...  ++.+...-=+....=++..+.+|++..+.
T Consensus       319 ~vl~~~lvi~~~~~~~~~~~~------------------~~~~f-~i~g--ll~g~s~G~~qA~SRSy~~~lvp~~k~~~  377 (438)
T COG2270         319 PVLMIGLVILSIAALYLIFLE------------------GELDF-WILG--LLVGTSLGGAQASSRSYLARLVPKGKEGR  377 (438)
T ss_pred             eeehHHHHHHHHHHHHHHHcc------------------ccHHH-HHHH--HHHHHhcchHHHHHHHHHHHhCCCccccc
Confidence            556677776666655555543                  12333 3321  44444444455667789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccccc
Q 014067          354 ATSLSWASLAMGYYFSTVLVSIVNNITS  381 (431)
Q Consensus       354 ~~gl~~l~~~iG~~l~~~l~~~~~~~~~  381 (431)
                      ..|++.++.-.++.+|+.+.+++..+|+
T Consensus       378 fFglyaltgra~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         378 FFGLYALTGRAASFLGPFLVAVITQITG  405 (438)
T ss_pred             eeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999987774

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=96.88  E-value=0.033  Score=56.48  Aligned_cols=110  Identities=13%  Similarity=0.075  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHH
Q 014067          248 LAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFL  327 (431)
Q Consensus       248 ~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~  327 (431)
                      ..|+-..+.-++.+|.++       .+-+.+++++.+++.+..++....    . .        ....++.+++...+++
T Consensus        75 ~~~ig~~~~G~l~Dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~~~----~-~--------~~~~~~~~l~~~R~l~  134 (432)
T PRK10406         75 MRPIGGWLFGRIADKHGR-------KKSMLISVCMMCFGSLVIACLPGY----E-T--------IGTWAPALLLLARLFQ  134 (432)
T ss_pred             HHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHhhcCCc----h-h--------HHHHHHHHHHHHHHHH
Confidence            334444455555565432       244777888887777776664210    0 0        0013456788889999


Q ss_pred             HhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          328 GSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       328 ~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      |+++-...|....++.+..|++.||.+++++......|..+++.+...+.
T Consensus       135 G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  184 (432)
T PRK10406        135 GLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ  184 (432)
T ss_pred             HhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998888888888877655543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.81  E-value=0.022  Score=58.82  Aligned_cols=135  Identities=11%  Similarity=0.065  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHH-hhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHH
Q 014067          243 IFILILAPVYNHVIIPF-ARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVA  321 (431)
Q Consensus       243 ~~iil~~pl~~~~~~pl-~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli  321 (431)
                      ....+..++.+++-+++ .+|           +-+.+|.++.+++.+.++..+                    .+..++.
T Consensus        56 ~~~~l~~ligG~LaDRilGrr-----------r~iliG~il~~lg~lll~~~~--------------------~~~~~~~  104 (493)
T PRK15462         56 SLVYVTPILGGFLADKVLGNR-----------MAVMLGALLMAIGHVVLGASE--------------------IHPSFLY  104 (493)
T ss_pred             HHHHHHHHHHHHHHHHccCcH-----------HHHHHHHHHHHHHHHHHHHhh--------------------cchhHHH
Confidence            34444555666665544 222           336788888877766544321                    1111222


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCch--hhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchh
Q 014067          322 LQYLFLGSADLFTLAGMMEFFFTDAPLS--MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHL  399 (431)
Q Consensus       322 ~~~~l~~igE~~~~~~~~~~~~~~aP~~--~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l  399 (431)
                      ....+..+|.-+..+...+++.++-|++  .|....++++....+|+.+++.+.+.+....      +|-          
T Consensus       105 l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw~----------  168 (493)
T PRK15462        105 LSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SWA----------  168 (493)
T ss_pred             HHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------ChH----------
Confidence            3334445555556676678888888875  7888999999999999999999988874211      232          


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccc
Q 014067          400 ERFYWLMCILGGLNFLHFLFWAARYK  425 (431)
Q Consensus       400 ~~~f~~la~l~~v~~i~~~~~~~~~~  425 (431)
                       .-|.+.++.++++.+.+++..|++.
T Consensus       169 -~~F~iaaigm~l~li~~~~~~~~l~  193 (493)
T PRK15462        169 -MGFGLAAVGMIAGLVIFLCGNRHFT  193 (493)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhhhhc
Confidence             3466666666666666665555543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.77  E-value=0.012  Score=57.87  Aligned_cols=90  Identities=14%  Similarity=0.108  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHH
Q 014067          275 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA  354 (431)
Q Consensus       275 ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~  354 (431)
                      -+.+|.++.+++.+..++....    . .        ......++++...+++|++.....+....++.+..|++.|+.+
T Consensus        67 ~l~~~~~~~~~~~~~~~~~~~~----~-~--------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  133 (394)
T TIGR00883        67 TLVITLLMMGIGTLLIGLLPSY----A-T--------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFY  133 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCh----h-h--------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHH
Confidence            3667777777777666654210    0 0        0012233567778999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhc
Q 014067          355 TSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       355 ~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ++++.....+|..+++.+...+.
T Consensus       134 ~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883       134 GSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998876654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00889 2A0110 nucleoside transporter

Probab=96.70  E-value=0.0018  Score=65.54  Aligned_cols=83  Identities=12%  Similarity=0.150  Sum_probs=66.1

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHhhhhhhcccc------cCchhHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV-FCLSCGALIAVTFVVWIEDN------KGWQWGFG   75 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y-~~iNiG~~i~~~~~~~l~~~------~g~~~~F~   75 (431)
                      ++...+.+++.+...++...++.|+++++      +|.+++++++ ...++|+.+||+++|++.++      +||+.+|.
T Consensus       312 ~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~  385 (418)
T TIGR00889       312 FLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL  385 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence            34556677788888888889999998744      3677899987 56789999999999999887      46999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 014067           76 ISTATILLSIPIFLLG   91 (431)
Q Consensus        76 i~~i~~~i~~iif~~~   91 (431)
                      ++++..+++.+++++.
T Consensus       386 ~~~~~~~i~~~l~~~~  401 (418)
T TIGR00889       386 FFAGYIAILAVLFMIF  401 (418)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888877776665544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.66  E-value=0.029  Score=58.51  Aligned_cols=117  Identities=15%  Similarity=0.114  Sum_probs=88.5

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .+.++....+..+++.|+.+.+.+++-||           +-+..+-++.++..+..++...        .        .
T Consensus        47 valv~~a~~LP~~Llsl~aG~laDr~drr-----------rili~~~~~~~~~~~~L~~l~~--------~--------~   99 (524)
T PF05977_consen   47 VALVQAASTLPILLLSLFAGALADRFDRR-----------RILILSQLLRALVALLLAVLAF--------F--------G   99 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccch-----------HHHHHHHHHHHHHHHHHHHHHH--------h--------C
Confidence            35668888889999999998877655433           2244444444444333333321        0        1


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ..++|.++..-++.+++..+..|+-.+.+-++.|++.-..+.++.....+++..+||.+++.+-
T Consensus       100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv  163 (524)
T PF05977_consen  100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV  163 (524)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            4677778888899999999999999999999999999999999999999999999998888764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.59  E-value=0.046  Score=51.57  Aligned_cols=147  Identities=11%  Similarity=0.178  Sum_probs=96.4

Q ss_pred             cCCCCcCchhHH---HHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 014067          232 VPPASLPVFPVI---FILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN  308 (431)
Q Consensus       232 ip~~~l~~~n~~---~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~  308 (431)
                      +++..-.++|..   ...++.|+++.+.++..++.          ..+..+.++..++=...++..              
T Consensus       297 lS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~----------~wv~~a~~~tl~~H~~l~Ft~--------------  352 (459)
T KOG4686|consen  297 LSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL----------WWVASACILTLLGHSGLFFTF--------------  352 (459)
T ss_pred             CChhhccchhhhhhhhhhhhhhhHHHhHhhhccee----------hhHHHHHHHHHHHhhhHHhhh--------------
Confidence            334333444443   34467888999888776552          223334333333322222221              


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCC
Q 014067          309 SSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPW  388 (431)
Q Consensus       309 ~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w  388 (431)
                            .|+|   ....++|++.-+..-..+..+..+.|++.-|+.-|......++|-.+.+.+.+++.+..+     ++
T Consensus       353 ------lsPy---~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g-----~y  418 (459)
T KOG4686|consen  353 ------LSPY---TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG-----SY  418 (459)
T ss_pred             ------ccHH---HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC-----ch
Confidence                  2332   356788888888888889999999999999999999999999999999888888763221     11


Q ss_pred             CcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 014067          389 LFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY  424 (431)
Q Consensus       389 ~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~  424 (431)
                              ..++.||..++.+++.+..+.+.+-|+-
T Consensus       419 --------~~le~ffl~~~~~aL~svgil~~~N~kq  446 (459)
T KOG4686|consen  419 --------DNLEAFFLIIGLMALTSVGILFYLNKKQ  446 (459)
T ss_pred             --------hhHHHHHHHHHHHHHHHHHHHhheeccc
Confidence                    2367888888888888776666555543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.58  E-value=1.1  Score=46.43  Aligned_cols=77  Identities=17%  Similarity=0.119  Sum_probs=63.8

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +.+.+.+.+++.++...+....++|.++++      +|..+-++ +.....|+.+++..++++..  +|++.+.+..+..
T Consensus       174 ~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~  244 (521)
T KOG0255|consen  174 FLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPS  244 (521)
T ss_pred             HHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence            466778899999999999999999999865      35556666 77888889999999999887  8999999888877


Q ss_pred             HHHHHH
Q 014067           82 LLSIPI   87 (431)
Q Consensus        82 ~i~~ii   87 (431)
                      ++.++.
T Consensus       245 ~~~~~~  250 (521)
T KOG0255|consen  245 GLFLLL  250 (521)
T ss_pred             HHHHHH
Confidence            777665

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.53  E-value=0.073  Score=54.46  Aligned_cols=84  Identities=11%  Similarity=0.076  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHH
Q 014067          275 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA  354 (431)
Q Consensus       275 ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~  354 (431)
                      -+.+|++.-.++..+.++...                  +    |+.-........-.+..|...+++.+++.++.+|..
T Consensus       310 ~i~lGl~~~~~~~~~~af~~~------------------~----w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v  367 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFATE------------------T----WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKV  367 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhcc------------------c----hhhhHHHHHHHhhcchhHHHHhHHHhhcccccccch
Confidence            466888888888888888641                  1    555556666666777889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcccc
Q 014067          355 TSLSWASLAMGYYFSTVLVSIVNNIT  380 (431)
Q Consensus       355 ~gl~~l~~~iG~~l~~~l~~~~~~~~  380 (431)
                      +++.....++.+.+++.+.+.+...|
T Consensus       368 ~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  368 FGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            99999999999999999988876665

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.50  E-value=0.014  Score=58.89  Aligned_cols=121  Identities=12%  Similarity=0.107  Sum_probs=80.2

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +.+.++..+.-.+..|+.+.+.++..+|.++|      ...+.+|.++.+++++.+....        .       ....
T Consensus        38 g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grr------r~~i~~~~~~~~i~~~~~~~~~--------~-------~~~~   96 (437)
T TIGR00792        38 GTLFLVARILDAITDPIMGNIVDRTRTRWGKF------RPWLLIGAIPFSIVLVLLFTTP--------D-------FSAT   96 (437)
T ss_pred             HHHHHHHHHHHHhccchheEeeecCCCCCCCc------chhHHHhHHHHHHHHHHHHhCC--------C-------CCcc
Confidence            34455566666777777777666543333221      1125667777777666554431        0       0012


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhccc-CchhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDA-PLSMRSLATSLSWASLAMGYYFSTVLVSIV  376 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~l~~~l~~~~  376 (431)
                      ...+|.+..+++.+++..+..+...+...+.+ |++.|+...+.......+|..+++.+...+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l  159 (437)
T TIGR00792        97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPL  159 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678888899999999888888788888887 468899999998888888888776664443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15075 citrate-proton symporter; Provisional

Probab=96.45  E-value=0.11  Score=52.62  Aligned_cols=91  Identities=20%  Similarity=0.136  Sum_probs=64.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhH
Q 014067          274 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL  353 (431)
Q Consensus       274 ~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~  353 (431)
                      +-+..+.++.+++.+..++....-. .            ......+++..-++.|+++-...+....++.+..|++.|+.
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~~~-~------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~  153 (434)
T PRK15075         87 KGLIVTLSIMASGTLLIAFVPGYAT-I------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGF  153 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcHHH-H------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchH
Confidence            4467777777777777666531000 0            00011245667789999999888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          354 ATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       354 ~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .++++.....+|..+++.++..+.
T Consensus       154 ~~~~~~~~~~~g~~~g~~~g~~l~  177 (434)
T PRK15075        154 YTSWQSASQQVAVVFAALLGYLLN  177 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988887777777777666553

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.39  E-value=0.3  Score=49.99  Aligned_cols=82  Identities=12%  Similarity=-0.013  Sum_probs=57.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhH
Q 014067          274 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL  353 (431)
Q Consensus       274 ~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~  353 (431)
                      +-+.++.++.++..+..++...             +   ...|++.++...++.|++ ....+.....+.+..|++.||+
T Consensus       101 ~v~~~~~ll~~i~~~~~~~a~~-------------~---~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~  163 (462)
T PRK15034        101 RWTVFSTAILIIPCVWLGIAVQ-------------N---PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGS  163 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-------------c---cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHH
Confidence            4566777777777766665310             0   114677788889999998 5577889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 014067          354 ATSLSWASLAMGYYFSTVL  372 (431)
Q Consensus       354 ~~gl~~l~~~iG~~l~~~l  372 (431)
                      ++|++.....+|..++..+
T Consensus       164 A~Gi~~g~G~~G~~l~~~l  182 (462)
T PRK15034        164 ALGINGGLGNLGVSVMQLV  182 (462)
T ss_pred             HHHHHHHHHhhHHHHHHHH
Confidence            9999954444444444333

>PRK09952 shikimate transporter; Provisional

Probab=96.38  E-value=0.06  Score=54.76  Aligned_cols=111  Identities=16%  Similarity=0.094  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHH
Q 014067          247 ILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLF  326 (431)
Q Consensus       247 l~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l  326 (431)
                      +..|+-..+.-++.+|.+       ..+-+.+++++.+++.+..++....-     .-        ...+++.++...++
T Consensus        75 ~~~~~g~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~~~l~~~R~l  134 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLG-------RKRMLMLTVWMMGIATALIGLLPSFS-----TI--------GWWAPVLLVTLRAI  134 (438)
T ss_pred             HHHhhHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHhcCCcHH-----HH--------HHHHHHHHHHHHHH
Confidence            445665555566666643       22446677877777777766653100     00        00123346778899


Q ss_pred             HHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          327 LGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       327 ~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      +|+++-...|....++.+..|++.||.+++......++|..++..+...+.
T Consensus       135 ~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~  185 (438)
T PRK09952        135 QGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS  185 (438)
T ss_pred             HHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998877665543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.32  E-value=0.067  Score=54.88  Aligned_cols=117  Identities=13%  Similarity=0.211  Sum_probs=91.3

Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchh
Q 014067          271 THLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM  350 (431)
Q Consensus       271 s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~  350 (431)
                      ...+-+..+.++.+++-+...++.                   ..+.+.++..-+++|++|-...|....+..+-+|++.
T Consensus       101 G~r~v~~~~~~~sa~~t~l~P~aa-------------------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E  161 (466)
T KOG2532|consen  101 GARRVFFISGLISALLTLLTPLAA-------------------SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE  161 (466)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHH-------------------HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH
Confidence            444568888888888777766654                   2455577889999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014067          351 RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAA  422 (431)
Q Consensus       351 ~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~  422 (431)
                      |++..++......+|..++..+++.+....     -+|=           .-|.+.|+++++-.+++.++.+
T Consensus       162 rs~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW~-----------sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  162 RSTFIAILTAGSQLGTIITMPVSGLLCESS-----LGWP-----------SIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCCc-----------hHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999988888775331     3563           3355667777777666666554

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.25  E-value=0.064  Score=57.21  Aligned_cols=89  Identities=15%  Similarity=0.164  Sum_probs=67.2

Q ss_pred             ChhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc-------------
Q 014067            1 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-------------   67 (431)
Q Consensus         1 ~~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~-------------   67 (431)
                      +|++|..+.++|...+.|--.+.+=|-..++      +....++++|..--+|.++|.+++++..+-             
T Consensus       239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~  312 (735)
T KOG3626|consen  239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITP  312 (735)
T ss_pred             HHHHHHHHhhcCCCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCC
Confidence            3678888899998887776666655554433      235688999999999999999999976431             


Q ss_pred             -----c-CchhHHHHHHHHHHHHHHHHHhcCcce
Q 014067           68 -----K-GWQWGFGISTATILLSIPIFLLGSPFY   95 (431)
Q Consensus        68 -----~-g~~~~F~i~~i~~~i~~iif~~~~~~~   95 (431)
                           + -||++|++++..++++.+-+++.-|.+
T Consensus       313 ~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  313 TDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence                 1 499999999999999888776654433

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.13  E-value=0.15  Score=50.89  Aligned_cols=91  Identities=11%  Similarity=0.070  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhh--hHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCC
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMR--SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN  393 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~--g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~  393 (431)
                      +.++++....+.+..+....|...+.+.+..|++-|  +.+.+......++|..+++.+++.+....      +|-    
T Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw~----  173 (393)
T PRK15011        104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SFT----  173 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------ChH----
Confidence            344444444445555556678888888777666544  45668888888999999999988774211      232    


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067          394 LNHYHLERFYWLMCILGGLNFLHFLFWAAR  423 (431)
Q Consensus       394 ~n~~~l~~~f~~la~l~~v~~i~~~~~~~~  423 (431)
                             .-|++.+++.++..+...+..|+
T Consensus       174 -------~~f~~~~~~~~~~~~~~~~~~~~  196 (393)
T PRK15011        174 -------VMYLSAAVAFIVCGVMVWLFLPS  196 (393)
T ss_pred             -------HHHHHHHHHHHHHHHHHHhhcCc
Confidence                   34667777776666655554444

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.02  E-value=0.097  Score=55.85  Aligned_cols=151  Identities=14%  Similarity=0.107  Sum_probs=99.9

Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHH----HHHhhhh-----hcC-----------CCC-----CCC-----CcchhHH-H
Q 014067          271 THLQRIGTGLILSIVAMAVAALVEI----KRKRVAV-----NSG-----------LVN-----SSE-----PLPITFL-W  319 (431)
Q Consensus       271 s~~~ki~~G~~l~~l~~~~~~~~~~----~~~~~~~-----~~g-----------~~~-----~~~-----~~~~s~~-w  319 (431)
                      ..++-+++|.++++++.++.++.+.    .+++...     +..           ..+     .++     .....+| .
T Consensus       160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  239 (735)
T KOG3626|consen  160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL  239 (735)
T ss_pred             CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence            4457799999999999999887752    1121111     000           000     000     1112233 4


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCC-Cc--CCCCCc
Q 014067          320 VALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPW-LF--GSNLNH  396 (431)
Q Consensus       320 li~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w-~~--~~~~n~  396 (431)
                      ++..-++.|+|+.-+.+.|.+++.+.+-++...++.|+.+....+|-.+|-+++++..+.-.     ++ ..  ..+.+|
T Consensus       240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYv-----D~~~~~~~it~~D  314 (735)
T KOG3626|consen  240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYV-----DFGLSPIGITPTD  314 (735)
T ss_pred             HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeee-----ccccCCCCCCCCC
Confidence            56788999999999999999999999999999999999999988777777777766654331     11 10  113334


Q ss_pred             chhhHH----HHHHHHHHHHHHHHHHHHhhcccc
Q 014067          397 YHLERF----YWLMCILGGLNFLHFLFWAARYKY  426 (431)
Q Consensus       397 ~~l~~~----f~~la~l~~v~~i~~~~~~~~~~~  426 (431)
                      ++-.--    |++.+++.++..+-+++.=|.+..
T Consensus       315 PrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  315 PRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence            442222    566778888888888887777754

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.01  E-value=0.086  Score=54.87  Aligned_cols=106  Identities=13%  Similarity=0.091  Sum_probs=88.6

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+...+..++.+++.+.+.||           +-+.++.++..++.++.+++                     
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----------~~l~~~~~~~~iG~ii~~~a---------------------  139 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----------KTLLLAVVLFLIGAIIIALA---------------------  139 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            5777788888888888888877777665           23667777777777777665                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhh
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVL  372 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l  372 (431)
                      .++++++...++.|+|--+.+....-++.+.+|++.||.+.++..+...+|..++-.+
T Consensus       140 ~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~  197 (513)
T KOG0254|consen  140 PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI  197 (513)
T ss_pred             hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            2678999999999999999999999999999999999999999999999998888333

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=95.95  E-value=0.013  Score=61.57  Aligned_cols=210  Identities=17%  Similarity=0.135  Sum_probs=118.4

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL   82 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~   82 (431)
                      |+...+..-+ +..++|++++.|+++....-  -+.+..+|..+|+.+|+++++..+.            .|+++...++
T Consensus        63 ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~--g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~~a~~  127 (571)
T KOG1237|consen   63 YLTLELHASG-GGAANNVNAFGGTQFLLPLL--GAFLADSFLGRYFTINIGSLISLLG------------LFGLTLSAMI  127 (571)
T ss_pred             HHHHHhccch-HHHHHHHHHHhhHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHHHh
Confidence            4455555555 88999999999999975321  2356778999999999999986544            6677777777


Q ss_pred             HHHHHHHhcCcceeec-CCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCch
Q 014067           83 LSIPIFLLGSPFYRNK-IPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE  161 (431)
Q Consensus        83 i~~iif~~~~~~~~~~-~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~  161 (431)
                      .++..+-+   .+... ...++|-.....++..++........             .      .+.++..-       +.
T Consensus       128 ~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~g-------------g------~r~~~~~f-------Ga  178 (571)
T KOG1237|consen  128 PALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAG-------------G------IRPCLLAF-------GA  178 (571)
T ss_pred             hhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccC-------------C------CCCcchhh-------cc
Confidence            66543332   11110 01112222233344444433221100             0      00000000       00


Q ss_pred             hHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhcc-CCCCcccCCCCcCch
Q 014067          162 DIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNT-KLGSLKVPPASLPVF  240 (431)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~-~~gg~~ip~~~l~~~  240 (431)
                      |+.+                ...+ ++++        .....++|..+.|..+.++.+...++. +..||.+-.+..+..
T Consensus       179 dQfd----------------~~~~-~~~~--------~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~  233 (571)
T KOG1237|consen  179 DQFD----------------ELDP-VEVK--------GIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVL  233 (571)
T ss_pred             cccC----------------ccCc-chhh--------CcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHH
Confidence            0000                0000 1111        134566788888888888777654443 335787888888999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHH
Q 014067          241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAA  291 (431)
Q Consensus       241 n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~  291 (431)
                      |.+.+++|.|....+.+|.          +.-..+..++.++.+++.-..+
T Consensus       234 ~~lai~iF~~g~~~y~~~~----------p~gsp~t~i~~Vlvaa~~k~~~  274 (571)
T KOG1237|consen  234 NALAILIFLPGFPFYRYKK----------PRGSPKTRIGQVLVAAAFKRKA  274 (571)
T ss_pred             HHHHHHHHHcCceeEEeeC----------CCCCchhHHHHHHHHHHHHHhc
Confidence            9999999988766543222          2222567778888887776644

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=95.78  E-value=0.42  Score=50.35  Aligned_cols=122  Identities=12%  Similarity=0.111  Sum_probs=81.9

Q ss_pred             HhccCCCCcccCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014067          222 TMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA  301 (431)
Q Consensus       222 ~~~~~~gg~~ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~  301 (431)
                      ++..++|+-. ...|+...+.+..-+..|+++++.+-+.||.           -+..|.++..++..+.+-.+       
T Consensus        69 ~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA~-------  129 (599)
T PF06609_consen   69 YINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATAQ-------  129 (599)
T ss_pred             HHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcCC-------
Confidence            3445566432 2457778888888889999999888777652           35677788888877766542       


Q ss_pred             hhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          302 VNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       302 ~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                                    |+.-++...++.|+|--..... ...+.+..|.+.|....++.....-+....|+.+...+.
T Consensus       130 --------------~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~  190 (599)
T PF06609_consen  130 --------------NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA  190 (599)
T ss_pred             --------------cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence                          2334566677777775555443 455788999999988777666655555556666665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=95.73  E-value=0.19  Score=50.18  Aligned_cols=116  Identities=10%  Similarity=0.057  Sum_probs=68.2

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +.+.++..+...+..|+.+++.++..||           +.+..+++..+++............              ..
T Consensus        41 g~~~~~~~l~~~i~~~~~G~l~Dr~grr-----------~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~   95 (396)
T TIGR00882        41 GIVFSCISLFSILFQPLFGLISDKLGLK-----------KHLLWIISGLLVLFAPFFIYVFGPL--------------LQ   95 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHHhhhH--------------HH
Confidence            5667788888889999999988776554           1233333333332221111100000              00


Q ss_pred             hhHH-HHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFL-WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~-wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ...+ ..+...++.+++.....|...+++.+..++  ++...|......++|..+++.+++.+.
T Consensus        96 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~  157 (396)
T TIGR00882        96 SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILF  157 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhh
Confidence            1122 345567788888888888887777766554  344556666666788888888877664

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.72  E-value=0.054  Score=53.84  Aligned_cols=124  Identities=17%  Similarity=0.142  Sum_probs=87.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCch---hh
Q 014067          275 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS---MR  351 (431)
Q Consensus       275 ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~---~~  351 (431)
                      -+.+|.++..+|.+++.+....        ...    ....+...+.....++++|.-++-|....+..+|-+++   .+
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~--------~~~----~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~   70 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIP--------PSL----PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR   70 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTS--------SSC----------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhc--------chh----hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence            3678888888888886665310        000    01234556777888999999999999999999999887   34


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 014067          352 SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS  427 (431)
Q Consensus       352 g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~~  427 (431)
                      ......++....+|+.++..+..++.+-      .+|.           ..|++.++.++++.+.|+.-.++|+.+
T Consensus        71 ~~~F~~fY~~in~G~~~~~~~~~~i~~~------~~~~-----------~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   71 DSFFNWFYWGINIGSLFSPTLVPYIQQN------YGWF-----------LGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHC------S-HH-----------HHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhHHHHHHHHhhhhHhhcccchhhccc------cchh-----------hhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            4566677888899999998887777521      2333           568888889999999999888888776

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.72  E-value=0.17  Score=50.75  Aligned_cols=45  Identities=16%  Similarity=-0.121  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHH
Q 014067          318 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASL  362 (431)
Q Consensus       318 ~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~  362 (431)
                      +++...-.+++..+.-..|++.|+.-+..=+...+...|+-.+..
T Consensus       360 viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~g  404 (480)
T KOG2563|consen  360 VIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSG  404 (480)
T ss_pred             EehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeeh
Confidence            344445567788888889999999999999999999999877643

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=95.70  E-value=0.76  Score=45.75  Aligned_cols=93  Identities=22%  Similarity=0.287  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHH---HHHHHHHHHhhhhhhhhhhhhhhhcccCchhhh
Q 014067          276 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLW---VALQYLFLGSADLFTLAGMMEFFFTDAPLSMRS  352 (431)
Q Consensus       276 i~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~w---li~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g  352 (431)
                      +-.|.++.+.+...+...-...   +. .+  ++ + ...++.|   ....|++.|+|--......++.+.|.+|++.|+
T Consensus        53 I~~G~~~~~~g~~~ap~a~~~l---~~-~~--~~-~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~  124 (403)
T PF03209_consen   53 IWGGTLLQAGGLAIAPFALLLL---AE-SG--QQ-S-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRP  124 (403)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH---cc-cc--cc-c-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhh
Confidence            6678887777776665543211   11 00  00 0 1122333   457889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhh
Q 014067          353 LATSLSWASLAMGYYFSTVLVSIV  376 (431)
Q Consensus       353 ~~~gl~~l~~~iG~~l~~~l~~~~  376 (431)
                      ...++.+.+.-+|-.+++.+.+..
T Consensus       125 ~~v~ivw~Mli~G~iv~ai~~g~l  148 (403)
T PF03209_consen  125 RVVAIVWVMLIVGIIVSAIVFGRL  148 (403)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998887654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.54  E-value=0.16  Score=51.95  Aligned_cols=158  Identities=12%  Similarity=0.094  Sum_probs=95.8

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      ++..+...+...+..|+++++-    +|.      .+..+-+.+|.+++++|-++...++..                 +
T Consensus        74 G~viaa~slg~~i~~liF~~Ws----~k~------~~~k~Pli~s~ii~~~g~llY~~l~~~-----------------~  126 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWS----NKT------GSVKKPLIVSFLIAIIGNLLYLALAYV-----------------P  126 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccc----ccc------CCcccCHHHHHHHHHHHHHHHHHHHhc-----------------c
Confidence            5666778888889999988742    221      122333788999999998887666521                 2


Q ss_pred             h-hHHHHHHHHHHHHhhh-hhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcC-
Q 014067          315 I-TFLWVALQYLFLGSAD-LFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG-  391 (431)
Q Consensus       315 ~-s~~wli~~~~l~~igE-~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~-  391 (431)
                      . +.|+++..+++.|+|- .+..--.+.-..+-.+++.|  +++.......+|..+|+.+...+..+-+.  +-.|. + 
T Consensus       127 ~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~r--A~a~~~~~~vlg~ilGp~~q~~f~~Lg~~--G~~i~-~~  201 (488)
T KOG2325|consen  127 NGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPR--AFAATSGGFVLGIILGPTIQLAFTPLGEK--GFMIL-PG  201 (488)
T ss_pred             cchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHH--HHHHhhhHHHHHHHHhHHHHHHHhhhcCC--ceEEc-Cc
Confidence            2 6788999999999994 44434433333334455555  45555555556666666665555444321  12344 4 


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014067          392 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY  426 (431)
Q Consensus       392 ~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~  426 (431)
                      ..+|......  |+++++.+++.++..+..|...+
T Consensus       202 ~~~n~YTap~--w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  202 LIFNMYTAPA--WLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             ceEEecchHH--HHHHHHHHHHHHHHHhheeeccc
Confidence            3455544443  55667777777777776665543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.51  E-value=3.4  Score=42.21  Aligned_cols=160  Identities=13%  Similarity=0.046  Sum_probs=95.9

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC--CCC-C
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGL--VNS-S  310 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~--~~~-~  310 (431)
                      ...+..++.+.+-+..-..+-.+..+.||.+ +   .....-+.+|.++..++++..-+.      ..++..+  .++ +
T Consensus       277 ~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir-~---fg~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~  346 (461)
T KOG3098|consen  277 TTYLIAIYSIGIGLGEVIGGLDFSILSKRIR-G---FGRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPP  346 (461)
T ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHhhhhh-h---cccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCcccc
Confidence            3445667777777776666666666655532 1   333334666666655544432221      1111111  011 1


Q ss_pred             CCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCc
Q 014067          311 EPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLF  390 (431)
Q Consensus       311 ~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~  390 (431)
                      ..-+.+...-...++++|++|.+.....+.++.... ++-+..+-+++-+..++++-++.......              
T Consensus       347 ~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~--------------  411 (461)
T KOG3098|consen  347 LLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL--------------  411 (461)
T ss_pred             cccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh--------------
Confidence            111233444556779999999999999999999999 55566777888888888887754443221              


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 014067          391 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  425 (431)
Q Consensus       391 ~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~  425 (431)
                             .+..+.+.+.+++....+++..+.++++
T Consensus       412 -------~l~~~~l~~~i~~~i~~~~~~~~~~~~~  439 (461)
T KOG3098|consen  412 -------LLYIYTLGLPIFCVIATTIFFIVAERTQ  439 (461)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   1223455666778888888888888774

>TIGR01272 gluP glucose/galactose transporter

Probab=95.46  E-value=0.11  Score=50.24  Aligned_cols=63  Identities=10%  Similarity=0.031  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      -|..+.+..+++.+.|-.+..++...++.+..|++.++..+++....+++|..++|.+++.+.
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            467789999999999999999999999999999999999999999999999999999998765

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.33  E-value=0.0037  Score=65.28  Aligned_cols=143  Identities=19%  Similarity=0.157  Sum_probs=3.0

Q ss_pred             HHhccCCCCcccCC---CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH-
Q 014067          221 ATMNTKLGSLKVPP---ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIK-  296 (431)
Q Consensus       221 ~~~~~~~gg~~ip~---~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~-  296 (431)
                      .+.++.++   ++.   +++.+.+=+.-+++..++..    +..|       -+.++-+++|.++++++.++.++.+-. 
T Consensus        27 ttiErRF~---l~S~~~G~i~s~~di~~~~~~~~vsy----~g~~-------~hrprwig~g~~~~~~g~~l~~lPhf~~   92 (539)
T PF03137_consen   27 TTIERRFG---LSSSQSGLISSSYDIGSLVVVLFVSY----FGGR-------GHRPRWIGIGALLMGLGSLLFALPHFLS   92 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHH----Hhhh-------cCCcceeeecHHHHHHHHHHHhccHhhc
Confidence            45555543   443   34455555555555544443    2333       245678999999999999887766521 


Q ss_pred             ---HHhhhhh--------cCCC------------C---C-CC-CcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCc
Q 014067          297 ---RKRVAVN--------SGLV------------N---S-SE-PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL  348 (431)
Q Consensus       297 ---~~~~~~~--------~g~~------------~---~-~~-~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~  348 (431)
                         ++.....        ...-            +   + ++ ....-+++++...++.|+|..-.++.+.+++.+.+++
T Consensus        93 ~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~  172 (539)
T PF03137_consen   93 GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK  172 (539)
T ss_dssp             -----------------------------------------------------------SSS------------------
T ss_pred             CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc
Confidence               1111000        0000            0   0 00 1123346678888999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          349 SMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       349 ~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      +..+++.|+.+....+|..+|-++++...
T Consensus       173 ~~splYiGi~~~~~~lGPa~Gf~lg~~~L  201 (539)
T PF03137_consen  173 KNSPLYIGILYAMSILGPALGFLLGSFCL  201 (539)
T ss_dssp             -----------------------------
T ss_pred             ccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence            99999999999999888877766666554

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=94.77  E-value=1.2  Score=44.33  Aligned_cols=143  Identities=12%  Similarity=0.021  Sum_probs=92.4

Q ss_pred             hHHHHHHhhcccchH-HHHHHHhccCCCCcccCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHH
Q 014067          202 TIMLNCCLAQLSTFS-VQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGL  280 (431)
Q Consensus       202 ~~~f~~~~~Q~~t~~-~~~~~~~~~~~gg~~ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~  280 (431)
                      ..+.|.+-++....+ +...+.+|.+    ....+..|..--....+..-..+++..+           .+..+-+.+|+
T Consensus        21 lFfl~G~~~~l~diLip~l~~~f~ls----~~~a~liqfaff~gYf~~~lpa~~~~kk-----------~gyk~gi~lgL   85 (422)
T COG0738          21 LFFLWGFITCLNDILIPHLKEVFDLT----YFEASLIQFAFFGGYFIMSLPAGLLIKK-----------LGYKAGIVLGL   85 (422)
T ss_pred             HHHHHHHHhhcchhhHHHHHHHhCcc----HHHHHHHHHHHHHHHHHHhccHHHHHHH-----------hhhHHHHHHHH
Confidence            333455555555443 2223444433    1123334443333333444344444332           34445588999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHH
Q 014067          281 ILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWA  360 (431)
Q Consensus       281 ~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l  360 (431)
                      .+++++..+..-+..                  .-++-..+...++++.|--+...++..+++.+.|++..+.=+.+...
T Consensus        86 ~l~avg~~lF~pAa~------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~  147 (422)
T COG0738          86 LLYAVGAALFWPAAS------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQA  147 (422)
T ss_pred             HHHHHHHHHHhhhhh------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHH
Confidence            999988777544321                  23444566778899999999999999999999999988888888888


Q ss_pred             HHHHHHHHhhhhhhhhc
Q 014067          361 SLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       361 ~~~iG~~l~~~l~~~~~  377 (431)
                      .+++|..+++.+++..-
T Consensus       148 fn~lGa~~gp~~g~~li  164 (422)
T COG0738         148 FNGLGAILGPLLGSSLI  164 (422)
T ss_pred             hhhhHHHHHHHHHHHHH
Confidence            88999999998886654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.67  E-value=0.0079  Score=62.84  Aligned_cols=90  Identities=10%  Similarity=0.113  Sum_probs=2.7

Q ss_pred             ChhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc-------------
Q 014067            1 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-------------   67 (431)
Q Consensus         1 ~~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~-------------   67 (431)
                      +|++|-++.++|...+.+--.+++=|-.++++      ..-..+++|.+..+|.++|.++++..-+.             
T Consensus       143 ~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~  216 (539)
T PF03137_consen  143 VFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVG  216 (539)
T ss_dssp             ---------SSS--------------------------------------------------------------------
T ss_pred             HHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCC
Confidence            36778888889988887777776666655432      34578889999999999999998865321             


Q ss_pred             --------c-CchhHHHHHHHHHHHHHHHHHhcCccee
Q 014067           68 --------K-GWQWGFGISTATILLSIPIFLLGSPFYR   96 (431)
Q Consensus        68 --------~-g~~~~F~i~~i~~~i~~iif~~~~~~~~   96 (431)
                              + .|+++|.+.++..++..+-+++.-|+++
T Consensus       217 i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp  254 (539)
T PF03137_consen  217 ITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP  254 (539)
T ss_dssp             --------------------------------------
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence                    2 3999999999999888776665555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=94.56  E-value=0.38  Score=47.74  Aligned_cols=111  Identities=8%  Similarity=-0.115  Sum_probs=66.4

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhh-hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQR-IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP  312 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~k-i~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~  312 (431)
                      .+++.++..+..++..|+.+.+.++..|+.        ..+| +.++..+.  +.   ....                  
T Consensus        41 iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~--------~~~~~~~~~~~~~--~~---~~~~------------------   89 (382)
T PRK11128         41 IGLLLGAGLVARFLGSLLIAPRVKDPSQLI--------PALRLLALLTLLF--AV---AFWF------------------   89 (382)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcchH--------HHHHHHHHHHHHH--HH---HHHH------------------
Confidence            355677778888888888887765544321        1112 21111111  11   1111                  


Q ss_pred             cchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          313 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       313 ~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ...++|.++...++.+++.....|...+.+.+.  ++.++..+|......++|..+|+.+++.+.
T Consensus        90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~  152 (382)
T PRK11128         90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLV  152 (382)
T ss_pred             hcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            013456666677778888877777766666654  344666677777777888888888887764

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.47  E-value=2.9  Score=36.08  Aligned_cols=62  Identities=10%  Similarity=0.110  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      +.+.+++.-++.|+|+.+.+.+.-.++.+.+.++.+++..|+++.....+..+|+++.-.+.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999988888877765553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=94.41  E-value=0.21  Score=49.18  Aligned_cols=108  Identities=16%  Similarity=0.126  Sum_probs=78.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 014067          238 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF  317 (431)
Q Consensus       238 ~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~  317 (431)
                      .+.-.+.=.+..|.++.+-+...||       +.    +.+|.+..+++....+...                     +.
T Consensus        74 GSsF~ilQ~~sS~~~G~~SD~yGRk-------pv----ll~c~~~va~s~ll~~~S~---------------------~F  121 (451)
T KOG2615|consen   74 GSSFSILQFISSPLWGCLSDRYGRK-------PV----LLACLIGVALSYLLWALSR---------------------NF  121 (451)
T ss_pred             hhHHHHHHHHhhhhhhhhhhhhCch-------HH----HHHHHHHHHHHHHHHHHHH---------------------HH
Confidence            3333344445666666666555443       22    4566666666666655542                     33


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 014067          318 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN  378 (431)
Q Consensus       318 ~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~  378 (431)
                      ..++.+-++.|+..-.++++ -+++.+.++++.|+..|+......++|..+||+++++...
T Consensus       122 ~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  122 AAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            45666788888888888766 4999999999999999999999999999999999998864

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=94.34  E-value=0.58  Score=46.46  Aligned_cols=60  Identities=5%  Similarity=-0.207  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ++++++..+++++.+.....|...+++.+  +++.|+...|......++|..+++.+++.+.
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~  152 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLI  152 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777888888887777887777643  4577899999999999999999998887765

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.21  E-value=1.3  Score=45.43  Aligned_cols=58  Identities=19%  Similarity=0.223  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhh
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLV  373 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~  373 (431)
                      +...++..-++.|+..-+......=++.+.||++.||.+..+..+...+|..++..++
T Consensus       115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~  172 (485)
T KOG0569|consen  115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG  172 (485)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            5566888999999999999999999999999999999999999999999999986665

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=94.12  E-value=0.45  Score=47.29  Aligned_cols=87  Identities=7%  Similarity=-0.039  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCc
Q 014067          317 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH  396 (431)
Q Consensus       317 ~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~  396 (431)
                      .+|++....+.++......+....+..+..+++.++.+.+.......+|..+|+.....+....      +|-       
T Consensus        97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw~-------  163 (390)
T TIGR02718        97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQR-------  163 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CHH-------
Confidence            3455555555656666666777778888888888888888888888889888887665543211      232       


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHH
Q 014067          397 YHLERFYWLMCILGGLNFLHFLFW  420 (431)
Q Consensus       397 ~~l~~~f~~la~l~~v~~i~~~~~  420 (431)
                          .-|++.+++.++..+..++.
T Consensus       164 ----~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       164 ----PAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHc
Confidence                34777777777666655444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09528 lacY galactoside permease; Reviewed

Probab=94.11  E-value=0.046  Score=55.14  Aligned_cols=79  Identities=18%  Similarity=0.124  Sum_probs=55.8

Q ss_pred             HHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHHH
Q 014067            5 GLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILL   83 (431)
Q Consensus         5 ~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~-~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~i   83 (431)
                      ...+.+++.+...+.....+.+.++++      .+...+.. +.++.++|+.+++.++|++.+.+||+..|.+.++..++
T Consensus       321 ~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i  394 (420)
T PRK09528        321 LKLLHAFEVPFLLVGVFKYITLNFDVR------LSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLL  394 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCcc------ceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence            344555666666666666667777543      23334433 45678899999999999999999999999988887776


Q ss_pred             HHHHHH
Q 014067           84 SIPIFL   89 (431)
Q Consensus        84 ~~iif~   89 (431)
                      ..++.+
T Consensus       395 ~~~~~~  400 (420)
T PRK09528        395 FTLISV  400 (420)
T ss_pred             HHHHHH
Confidence            655443

>PRK09669 putative symporter YagG; Provisional

Probab=94.08  E-value=0.24  Score=50.39  Aligned_cols=115  Identities=10%  Similarity=-0.017  Sum_probs=68.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 014067          238 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF  317 (431)
Q Consensus       238 ~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~  317 (431)
                      ..+.-++-.+..|+.+.+.++...|.+++      ..-+..|.+..++++..+....        +.+       .....
T Consensus        51 ~~i~~i~dai~dp~~G~lsD~~~~r~Grr------rp~il~~~~~~~i~~~l~f~~p--------~~~-------~~~~~  109 (444)
T PRK09669         51 FLVVRVLDAVTDPLMGALVDRTRTRHGQF------RPYLLWFAIPFGVVCLLTFYTP--------DFG-------ATGKI  109 (444)
T ss_pred             HHHHHHHHHcccceeeEeeecCCCCCCCc------chhHHHHHHHHHHHHHHHHhCC--------CCC-------cchHH
Confidence            33334444455555555555433332221      1125566666666655433321        000       12456


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhccc-CchhhhHHHHHHHHHHHHHHHHhhhhh
Q 014067          318 LWVALQYLFLGSADLFTLAGMMEFFFTDA-PLSMRSLATSLSWASLAMGYYFSTVLV  373 (431)
Q Consensus       318 ~wli~~~~l~~igE~~~~~~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~l~~~l~  373 (431)
                      +|....|++.+++-.+..+.-.+...+.+ +++.|+...+.-.....+|..+++.+.
T Consensus       110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~  166 (444)
T PRK09669        110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA  166 (444)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888888777777777778888887 447788888887777777777776544

>PRK11462 putative transporter; Provisional

Probab=94.04  E-value=1.2  Score=45.75  Aligned_cols=84  Identities=14%  Similarity=0.042  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccC-chhhhHH
Q 014067          276 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-LSMRSLA  354 (431)
Q Consensus       276 i~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP-~~~~g~~  354 (431)
                      +.+|.+..++++..+....        +.+       ......|....|++..++-.+....-.++...+++ ++.|+..
T Consensus        83 il~g~i~~~i~~~llf~~p--------~~s-------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l  147 (460)
T PRK11462         83 VLFGALPFGIVCVLAYSTP--------DLS-------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISL  147 (460)
T ss_pred             HhHHHHHHHHHHHHHHhCC--------CCC-------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHH
Confidence            5567777777765544321        000       11236788999999999999999999999999999 6899999


Q ss_pred             HHHHHHHHHHHHHHhhhhhh
Q 014067          355 TSLSWASLAMGYYFSTVLVS  374 (431)
Q Consensus       355 ~gl~~l~~~iG~~l~~~l~~  374 (431)
                      ++.-.....+|..+++.+..
T Consensus       148 ~s~r~~~~~iG~~~~~~~~~  167 (460)
T PRK11462        148 QSWRFVLATAGGMLSTVLMM  167 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999888888877766643

>PTZ00207 hypothetical protein; Provisional

Probab=94.00  E-value=9.8  Score=40.36  Aligned_cols=76  Identities=13%  Similarity=-0.020  Sum_probs=56.1

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHH-HhhhhhhcccccCchhHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALI-AVTFVVWIEDNKGWQWGFGISTAT   80 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i-~~~~~~~l~~~~g~~~~F~i~~i~   80 (431)
                      +++...+.++|.+.+.+.......++|++       +|..+.++...+.++|+++ +++..+++.+  +|+..|.+.++.
T Consensus       123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl  193 (591)
T PTZ00207        123 LSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSF  193 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHH
Confidence            35566778889988888888889999852       3577899999999999975 6666666654  567777766665


Q ss_pred             HHHHHH
Q 014067           81 ILLSIP   86 (431)
Q Consensus        81 ~~i~~i   86 (431)
                      .++..+
T Consensus       194 ~~vv~l  199 (591)
T PTZ00207        194 ALVVGI  199 (591)
T ss_pred             HHHHHH
Confidence            555444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=93.25  E-value=0.18  Score=52.00  Aligned_cols=83  Identities=16%  Similarity=0.297  Sum_probs=70.6

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccC-chhHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTAT   80 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g-~~~~F~i~~i~   80 (431)
                      ||+.-+++++..|...+..-++.++..|+++      ...+|++|-......+.+||++.+.+.+..| .+.+|....+.
T Consensus       383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~l  456 (477)
T PF11700_consen  383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVL  456 (477)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            3455567899999999999999999998763      4679999999999999999999999988665 88999888888


Q ss_pred             HHHHHHHHHh
Q 014067           81 ILLSIPIFLL   90 (431)
Q Consensus        81 ~~i~~iif~~   90 (431)
                      ++++++++..
T Consensus       457 f~~gl~ll~~  466 (477)
T PF11700_consen  457 FLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHhh
Confidence            8888876643

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=93.25  E-value=1.6  Score=43.60  Aligned_cols=118  Identities=14%  Similarity=0.030  Sum_probs=76.9

Q ss_pred             cCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 014067          232 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE  311 (431)
Q Consensus       232 ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~  311 (431)
                      +++++...+..+.++..+.+ -...-++.+|.       .+.+-..+++++..+-.+..++...                
T Consensus        46 LS~~q~~ll~aiPil~Gall-Rl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~----------------  101 (417)
T COG2223          46 LSEGQKGLLVAIPILVGALL-RLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVT----------------  101 (417)
T ss_pred             CCHHHHHHHHHHHHHHhHHH-HHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHcc----------------
Confidence            66777666666666655443 22233444553       3445566777877887777777641                


Q ss_pred             CcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          312 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       312 ~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                        ..|.|+++..=++.|++-.- ...++..+.+-=||+.||.++|++. ..++|..+...+...+.
T Consensus       102 --~~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~  163 (417)
T COG2223         102 --YPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA  163 (417)
T ss_pred             --CCchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence              23445566666677776533 3566788999999999999999998 66666666665555554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=93.19  E-value=0.00023  Score=72.45  Aligned_cols=79  Identities=19%  Similarity=0.271  Sum_probs=58.8

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc---ccCchhHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---NKGWQWGFGIST   78 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~---~~g~~~~F~i~~   78 (431)
                      +.++..+.++|.|+.-+....++.+..+++      +|.....+...+.++|.+++..++-.+.+   +.+|+..+.+++
T Consensus       105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~  178 (451)
T PF00083_consen  105 LLIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGA  178 (451)
T ss_pred             cccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccc
Confidence            466788999999999999999998887644      35556677778888998888776654433   346999988877


Q ss_pred             HHHHHHHH
Q 014067           79 ATILLSIP   86 (431)
Q Consensus        79 i~~~i~~i   86 (431)
                      +..++.++
T Consensus       179 ~~~l~~~~  186 (451)
T PF00083_consen  179 IPSLLVLL  186 (451)
T ss_pred             cccccccc
Confidence            76655433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF13347 MFS_2: MFS/sugar transport protein

Probab=92.98  E-value=0.42  Score=48.32  Aligned_cols=125  Identities=18%  Similarity=0.270  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-hhhhHH
Q 014067          276 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLA  354 (431)
Q Consensus       276 i~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~-~~~g~~  354 (431)
                      +.+|.++.++++..+....-        .+     ........|+...|++..++--+....-.++..+.+|+ +.|...
T Consensus        75 ~l~g~i~~~~~~~llf~~~p--------~~-----~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l  141 (428)
T PF13347_consen   75 ILIGAILLALSFFLLFSPPP--------AG-----LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRL  141 (428)
T ss_pred             eehhhHHHHHHHHHhhcccc--------ch-----hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhH
Confidence            66788888888877665410        00     00124667889999999999999999999999999995 689999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067          355 TSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAAR  423 (431)
Q Consensus       355 ~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~  423 (431)
                      .+.-.+...+|+.+.+.+...+..         |+ .++-+........++.+++.++..++..+..|.
T Consensus       142 ~~~~~~~~~~g~~l~~~~~~~l~~---------~~-g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  142 SSWRMIFSMIGSLLASFLAPILVS---------WF-GGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh---------hh-ccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            998888888888766655554432         22 111000022244555666666666655555555

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=92.55  E-value=1.4  Score=45.82  Aligned_cols=84  Identities=15%  Similarity=0.220  Sum_probs=65.1

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                      -|+++++..-++.|++..-....+...+.+..+++.|+.++.+ ......+..+++.++.++.        .+|=     
T Consensus       169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~--------~~Wr-----  234 (521)
T KOG0255|consen  169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT--------RDWR-----  234 (521)
T ss_pred             CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH--------hhHH-----
Confidence            4678889999999999999999999999999999999999999 6666666666666666654        2453     


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHH
Q 014067          395 NHYHLERFYWLMCILGGLNFLHFL  418 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~~  418 (431)
                            ++++..++.+++..++++
T Consensus       235 ------~~~~~~~~~~~~~~~~~~  252 (521)
T KOG0255|consen  235 ------WLFWIISIPSGLFLLLWF  252 (521)
T ss_pred             ------HHHHHHHHHHHHHHHHHH
Confidence                  556766666666655533

>PRK10429 melibiose:sodium symporter; Provisional

Probab=92.24  E-value=1.1  Score=46.17  Aligned_cols=116  Identities=11%  Similarity=0.068  Sum_probs=71.3

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 014067          237 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT  316 (431)
Q Consensus       237 l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s  316 (431)
                      +..+..++-.+..|+.+.+.++...|.+++    .  .-+.+|.+..++++..+....          +   .  .....
T Consensus        47 i~~i~ri~dai~dp~~G~lsD~t~sr~Grr----r--p~il~g~i~~~i~~~llf~~p----------~---~--~~~~~  105 (473)
T PRK10429         47 LFLVARIWDAINDPIMGWIVNNTRSRWGKF----K--PWILIGTLANSVVLFLLFSAH----------L---F--EGTAQ  105 (473)
T ss_pred             HHHHHHHHHHHhhchheeehhcCCCCCCCc----c--hhHhhhhHHHHHHHHHHHcCC----------C---C--CccHH
Confidence            344444444555555555554332222211    1  125667777777765543221          0   0  01234


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhccc-CchhhhHHHHHHHHHHHHHHHHhhhhh
Q 014067          317 FLWVALQYLFLGSADLFTLAGMMEFFFTDA-PLSMRSLATSLSWASLAMGYYFSTVLV  373 (431)
Q Consensus       317 ~~wli~~~~l~~igE~~~~~~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~l~~~l~  373 (431)
                      .+|.+..|++..++--+..+.-.++..+++ +++.|+...+.-.....+|+.+.+.+.
T Consensus       106 ~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~  163 (473)
T PRK10429        106 YVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFT  163 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678888999999998888899999999999 588999988875666666666655443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=91.81  E-value=0.44  Score=48.72  Aligned_cols=60  Identities=7%  Similarity=0.002  Sum_probs=50.5

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 014067          321 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT  380 (431)
Q Consensus       321 i~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~  380 (431)
                      +-.-++.|++--+++....+..+++.-+..+|+++|++....+++..+++.+........
T Consensus       392 ~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~  451 (488)
T KOG2325|consen  392 ISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS  451 (488)
T ss_pred             eehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc
Confidence            334457778887888889999999999999999999999999999999998887665433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=91.49  E-value=5.6  Score=40.84  Aligned_cols=103  Identities=17%  Similarity=0.143  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHH
Q 014067          240 FPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLW  319 (431)
Q Consensus       240 ~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~w  319 (431)
                      .-++..++..|+++.+.+++.||        .++..-..|.++-.+..++                          ..||
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk--------~~L~~~~~~~~l~~~~~~~--------------------------~~~~  115 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRK--------VVLLLPLFGTILPALCLLF--------------------------QGYW  115 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhh--------hhHHHHHHHHHHhHHHHHH--------------------------HHHH
Confidence            34677888999999998888776        3333333444443333222                          1245


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          320 VALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       320 li~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+. ..=..-+-..+...+.+++++.+..+.|....|+...+.+.+..+++.+++...
T Consensus       116 ~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~  172 (463)
T KOG2816|consen  116 FFL-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV  172 (463)
T ss_pred             Hhh-hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            544 111122333456778899999999999999999999999999999998887764

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.37  E-value=0.64  Score=44.13  Aligned_cols=77  Identities=17%  Similarity=0.161  Sum_probs=58.5

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccC---chhHHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG---WQWGFGISTA   79 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g---~~~~F~i~~i   79 (431)
                      |+++.+.++...+.--+.-++++...+++      +...+|...|...|+|-.+.|++++.+.++-|   |--+|.+...
T Consensus       356 y~~m~~lGLsysllAcslWP~va~~vpE~------qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~  429 (459)
T KOG4686|consen  356 YTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG  429 (459)
T ss_pred             HHHHHHHhhhHHHHHHHHhhhhhhhCCHH------HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence            56777788877776666778888888755      46789999999999999999999999988644   5555655555


Q ss_pred             HHHHHH
Q 014067           80 TILLSI   85 (431)
Q Consensus        80 ~~~i~~   85 (431)
                      .|.+..
T Consensus       430 ~~aL~s  435 (459)
T KOG4686|consen  430 LMALTS  435 (459)
T ss_pred             HHHHHH
Confidence            555443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=89.28  E-value=3.1  Score=42.54  Aligned_cols=100  Identities=15%  Similarity=0.129  Sum_probs=71.8

Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-hhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCC
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS  392 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~-~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~  392 (431)
                      ..+..|....|.+++++--++...--++...++++ +.|....+..+...++|+.+...+...+...-+         ++
T Consensus       109 ~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g---------~~  179 (467)
T COG2211         109 TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG---------GG  179 (467)
T ss_pred             CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CC
Confidence            36778888999999999999998888998888886 788999999999999998888777655442222         11


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014067          393 NLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY  426 (431)
Q Consensus       393 ~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~  426 (431)
                      |    +..-|+.....++++..+.++++.+.-|-
T Consensus       180 ~----~~~g~~~~~~~~~vi~~i~~l~~~~~v~E  209 (467)
T COG2211         180 D----KALGYQGTALVLGVIGVILLLFCFFNVKE  209 (467)
T ss_pred             c----chhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            1    11234555555666666666666655543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=88.66  E-value=4.7  Score=40.99  Aligned_cols=84  Identities=17%  Similarity=0.167  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcc---cCchhhh
Q 014067          276 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTD---APLSMRS  352 (431)
Q Consensus       276 i~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~---aP~~~~g  352 (431)
                      +.+|.++.+++...++....                 ...+........++.++|..+.....-+.+.+.   -|++ +|
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~-----------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g  123 (433)
T PF03092_consen   62 MIIGWLLGAVSALVLALLPA-----------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RG  123 (433)
T ss_pred             HHHHHHHHHHHHHHHHhccc-----------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hH
Confidence            66777777666655555421                 012222333344555555555555544444433   3555 88


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          353 LATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       353 ~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      ..++..+....+|+.++..+++...
T Consensus       124 ~lqS~~~~~~~~G~lv~~~l~G~l~  148 (433)
T PF03092_consen  124 DLQSFVWGVRSVGSLVGSLLSGPLL  148 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            8999988889999999988876654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=88.26  E-value=12  Score=35.06  Aligned_cols=122  Identities=13%  Similarity=0.139  Sum_probs=76.4

Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchh
Q 014067          271 THLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM  350 (431)
Q Consensus       271 s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~  350 (431)
                      .|..-..+|.++..+++....+.-.         +.     ....+.|.+.....+.+.|.....-....-..+.-|+ .
T Consensus        64 gp~~~l~iG~~~~~~GY~~~~l~~~---------~~-----i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~  128 (250)
T PF06813_consen   64 GPWVVLLIGAVLGFVGYGLLWLAVS---------GR-----IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S  128 (250)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHh---------Cc-----cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence            3444567888888888877666531         10     0124555555555666677766655555555567775 7


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 014067          351 RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  425 (431)
Q Consensus       351 ~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~  425 (431)
                      ||.+.|+---..++++.+=..+...+.             ++     +.+.|+++++....+..++.....|..+
T Consensus       129 RG~vvgilk~~~GLSaai~t~i~~~~f-------------~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  129 RGTVVGILKGFFGLSAAIFTQIYSAFF-------------GD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             cCceehhhhHHHHhHHHHHHHHHHHHc-------------CC-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            999999999888888877555544332             22     2235667777766666555655666664

>PRK09848 glucuronide transporter; Provisional

Probab=88.05  E-value=5.2  Score=40.56  Aligned_cols=109  Identities=9%  Similarity=0.006  Sum_probs=60.0

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +.+.....+...+..|+.+++.++..+|.+++    .+  -+.+|.+..+++...+....         .+.     ...
T Consensus        47 g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~----~~--~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~  106 (448)
T PRK09848         47 GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKF----RP--FLLFGTAPLMIFSVLVFWVP---------TDW-----SHS  106 (448)
T ss_pred             HHHHHHHHHHHHHhhhhheeeeecCCCCCcCc----hH--HHHHHHHHHHHHHHHHHhCc---------CCC-----Ccc
Confidence            44556666677777777777766554332221    11  12344443433332221111         000     012


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCc-hhhhHHHHHHHHHHH
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLATSLSWASLA  363 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~-~~~g~~~gl~~l~~~  363 (431)
                      ...+|....+++.+++..+..+...+....++++ +.|+...+.-....+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~  156 (448)
T PRK09848        107 SKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAAS  156 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence            3567778888888988888887777777766655 557777665544333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=87.67  E-value=15  Score=36.27  Aligned_cols=139  Identities=20%  Similarity=0.209  Sum_probs=90.1

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      .+.+++-+..=++.|+..    ++.||       .++.+-+..++++.+++..+       |.               -.
T Consensus        51 lLTtLPll~fg~~ap~a~----~Lar~-------~g~er~l~~~Llli~~G~~i-------R~---------------~~   97 (395)
T COG2807          51 LLTTLPLLAFGLFAPAAP----RLARR-------FGEERSLFLALLLIAAGILI-------RS---------------LG   97 (395)
T ss_pred             HHHHHHHHHHHHHHhhhH----HHHHH-------HhhHHHHHHHHHHHHHHHHH-------Hh---------------cc
Confidence            344444444444444443    34455       45666677777776655443       21               12


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCC
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN  395 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n  395 (431)
                      +.+-+...-++.+.|-....+-..+.+-+.-|++. +.+||+|..+.++|..+++.+...+....     .+|-      
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW~------  165 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGWR------  165 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccHH------
Confidence            44556777788888888888888899999988875 58999999999999999988876654222     2353      


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 014067          396 HYHLERFYWLMCILGGLNFLHFLFWAARY  424 (431)
Q Consensus       396 ~~~l~~~f~~la~l~~v~~i~~~~~~~~~  424 (431)
                           .-....+..+++++++++-...|+
T Consensus       166 -----~aL~~WAl~allAl~~WlPq~~r~  189 (395)
T COG2807         166 -----GALGFWALLALLALLIWLPQALRE  189 (395)
T ss_pred             -----HHHHHHHHHHHHHHHHHhhhcccc
Confidence                 123445667777777777664443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=87.41  E-value=10  Score=38.61  Aligned_cols=123  Identities=10%  Similarity=0.140  Sum_probs=71.1

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCch
Q 014067          270 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS  349 (431)
Q Consensus       270 ~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~  349 (431)
                      .+...|+..++++..+.++.....-. +       +   .  ......+..+..-++.+++..+...+.+.++...-|+ 
T Consensus        72 i~~~~Ri~~~lv~~~~~~~~~~~l~~-~-------~---~--~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~-  137 (437)
T TIGR00939        72 IPVTVRLLGGLVILLVVVILVMVLVK-V-------Q---T--SETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPST-  137 (437)
T ss_pred             cCccchhHHHHHHHHHHHHHHhheee-e-------c---C--CcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHH-
Confidence            56667888887765555544333210 0       0   0  0113455556666788999999888888888865543 


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCC--CCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 014067          350 MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN--LNHYHLERFYWLMCILGGLNFLHFLFWA  421 (431)
Q Consensus       350 ~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~--~n~~~l~~~f~~la~l~~v~~i~~~~~~  421 (431)
                          +++.+....++++.++..+--+.. ...         +|+  .+.+. ..||.+-+++.+++.+.|..+.
T Consensus       138 ----~~~a~~~G~g~aGv~~s~~~ii~~-a~~---------~~~~~~~~~a-~~YF~~a~~v~l~~i~~~~~l~  196 (437)
T TIGR00939       138 ----YSSAVMSGQGLAGVLTSLAMILVK-ASG---------NDSHGLKKSA-LGYFGTPCVVQLICIVCYLLLP  196 (437)
T ss_pred             ----HHHHHHhcchhHHHHHHHHHHHHH-Hhc---------CCccchhhhh-hhHHHHHHHHHHHHHHHHHHHh
Confidence                444555557777776655533222 111         221  22222 2467777777888888877654

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=87.12  E-value=4.6  Score=42.00  Aligned_cols=139  Identities=11%  Similarity=0.044  Sum_probs=94.8

Q ss_pred             CCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          234 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       234 ~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      .+|..++......+..|+...+.    +|.+       -..-+.+|-++++++++...+..                   
T Consensus        83 ~~~i~sl~~~~~~~~gpl~s~l~----~rfg-------~R~v~i~G~~v~~~g~~lssF~~-------------------  132 (509)
T KOG2504|consen   83 IAWIGSLLLGVYLLAGPLVSALC----NRFG-------CRTVMIAGGLVAALGLLLSSFAT-------------------  132 (509)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHH----hhcC-------chHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            46777787777777788877654    5532       22457789999999999988873                   


Q ss_pred             chhHHHH-HHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCC
Q 014067          314 PITFLWV-ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS  392 (431)
Q Consensus       314 ~~s~~wl-i~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~  392 (431)
                        ++|.+ +-.-++.|+|--+++......+. .=.++.|++++|+-....++|..+=+.+....-..      .+|-   
T Consensus       133 --~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~------~G~r---  200 (509)
T KOG2504|consen  133 --SLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSK------YGWR---  200 (509)
T ss_pred             --hHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHH------hCcH---
Confidence              44444 34556778888888777666665 45678899999999999999888777666554311      1342   


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067          393 NLNHYHLERFYWLMCILGGLNFLHFLFWAAR  423 (431)
Q Consensus       393 ~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~  423 (431)
                              +-.+.++.++ ++.+++.+..|+
T Consensus       201 --------~~~l~~~~~~-l~~~~~~~~~rp  222 (509)
T KOG2504|consen  201 --------GALLIFGGIS-LNVLVAGALLRP  222 (509)
T ss_pred             --------HHHHHHHHHH-HHHHHHHHHcCC
Confidence                    2345555555 555556665555

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=86.91  E-value=35  Score=34.06  Aligned_cols=54  Identities=15%  Similarity=0.116  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          319 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       319 wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      |+...-++++.+-    -..+.+.-+.=|...|++..|.-..+.-+|.+++|++. ...
T Consensus       440 llf~arafisg~f----qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~  493 (528)
T KOG0253|consen  440 LLFTARAFISGAF----QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRA  493 (528)
T ss_pred             HHHHHHHHHhchh----eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHh
Confidence            5555555555544    33444555566789999999999999999999999887 443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=86.12  E-value=3.6  Score=41.68  Aligned_cols=163  Identities=15%  Similarity=0.083  Sum_probs=104.8

Q ss_pred             HHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcccCC---CCcCchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 014067          190 KIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP---ASLPVFPVIFILILAPVYNHVIIPFARKVTKT  266 (431)
Q Consensus       190 k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~ip~---~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~  266 (431)
                      +++++...+.+..=+.|....+..|-+++       .+|   +|-   +..+..-|+.-++.+|+.+...++.-.|.++|
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-------~lG---vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR  101 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-------SLG---VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR  101 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-------HcC---CCcccccccccccccccceecccccccccccccccccc
Confidence            45555556666677778877766655543       223   443   34567788999999999999888877776543


Q ss_pred             CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC-C-CcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 014067          267 EMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSS-E-PLPITFLWVALQYLFLGSADLFTLAGMMEFFFT  344 (431)
Q Consensus       267 ~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~  344 (431)
                          +|  =|.+|.++.++++...+...-.-+...      |++ . ..+-++...+..+.++-++--.+.-..=++..+
T Consensus       102 ----RP--fI~~~s~~i~~~l~Lig~aaDig~~lg------d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~D  169 (498)
T KOG0637|consen  102 ----RP--FILAGSLLIAVSLFLIGYAADIGLLLG------DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLAD  169 (498)
T ss_pred             ----cc--hHHHhhHHHHHHHhhhhhHhhhhHHhc------CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHH
Confidence                12  166777777777776665542111111      111 1 223555566667777777775555445577777


Q ss_pred             ccCchhhhH-HHHHHHHHHHHHHHHhhhhhh
Q 014067          345 DAPLSMRSL-ATSLSWASLAMGYYFSTVLVS  374 (431)
Q Consensus       345 ~aP~~~~g~-~~gl~~l~~~iG~~l~~~l~~  374 (431)
                      ++-...|-. ..+.+.+..++||.+|-.+++
T Consensus       170 l~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  170 LARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            765555555 999999999999999876665

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=84.39  E-value=1.4  Score=44.30  Aligned_cols=78  Identities=17%  Similarity=0.168  Sum_probs=55.7

Q ss_pred             HHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHH-HHHHHHHhhhhhhcccccC------chhHHHHHHHHH
Q 014067            9 VALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCL-SCGALIAVTFVVWIEDNKG------WQWGFGISTATI   81 (431)
Q Consensus         9 i~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~i-NiG~~i~~~~~~~l~~~~g------~~~~F~i~~i~~   81 (431)
                      =++..|.+......++.+..+++.      |.++=+++.... -+|..+|..++|++.|++|      |...|.++++..
T Consensus       311 hG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~  384 (400)
T PF03825_consen  311 HGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMA  384 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            466677788888888888887653      344555545443 4899999999999998766      445667777777


Q ss_pred             HHHHHHHHhcC
Q 014067           82 LLSIPIFLLGS   92 (431)
Q Consensus        82 ~i~~iif~~~~   92 (431)
                      ++..++|.+..
T Consensus       385 ~~~~~~f~~~f  395 (400)
T PF03825_consen  385 LVILVLFVILF  395 (400)
T ss_pred             HHHHHHHHhhc
Confidence            77777776543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=82.91  E-value=61  Score=33.40  Aligned_cols=52  Identities=10%  Similarity=0.028  Sum_probs=37.6

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHH-HHHHHhhhhh
Q 014067          322 LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLA-MGYYFSTVLV  373 (431)
Q Consensus       322 ~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~-iG~~l~~~l~  373 (431)
                      .+.++.-.++--..-..-|+++...+++.|...-+..=...+ +|-.+|+.+.
T Consensus       381 ~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~  433 (472)
T TIGR00769       381 IQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQ  433 (472)
T ss_pred             HHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHH
Confidence            377777777777777778999999999999888776655443 5555554443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00788 fbt folate/biopterin transporter

Probab=82.33  E-value=24  Score=36.17  Aligned_cols=58  Identities=16%  Similarity=0.064  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhH---HHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          319 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL---ATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       319 wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~---~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      +.+...++.+++.....+..-++..+..| +.++.   .+...+...++|..+|+.+++...
T Consensus       122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            33345778888888888888888888887 43333   444444445678888877777654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	431
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		1e-04

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/361 (18%), Positives = 142/361 (39%), Gaps = 46/361 (12%)
Query: 3   FAGLYIVALGVGGIKGSLAPHGAEQYDETTQ-LGRKQRSAFFNYYVFCLSCGALIAVTFV 61
           + GL+++ALG GGIK  ++    +Q+D++ + L +K     F+ + F ++ G+  A   +
Sbjct: 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA----FDMFYFTINFGSFFASLSM 168
Query: 62  VWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCK 121
             +  N G    FGI    + ++   F LG   Y +  P          V+ +A+    +
Sbjct: 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVE 228
Query: 122 SKNSSNAVTEVHSSPTCSNESRD-------EGNSNVKEKVPSQKPTEDIKFLNRALRNNP 174
            K +   V  +    + +    +        G       V           L RA +++P
Sbjct: 229 GKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHP 288
Query: 175 AYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVP- 233
              +                     +  ++L   +    +   Q+A+T   +   +  P 
Sbjct: 289 DAAVDGVRSV---------------LRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ 333
Query: 234 ---PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVA 290
              PA +     + +++L P  N V+ P    + +  + +T L+++G G+ ++ ++  V 
Sbjct: 334 WFEPAMMQALNPLLVMLLIPFNNFVLYP---AIERMGVKLTALRKMGAGIAITGLSWIVV 390
Query: 291 ALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM 350
             +++          +++    L I   W  L Y  L   ++   A  +EF ++ AP +M
Sbjct: 391 GTIQL----------MMDGGSALSI--FWQILPYALLTFGEVLVSATGLEFAYSQAPKAM 438
Query: 351 R 351
           +
Sbjct: 439 K 439

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	431
2xut_A	524	Proton/peptide symporter family protein; transport	6e-86
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  270 bits (693), Expect = 6e-86
 Identities = 72/426 (16%), Positives = 160/426 (37%), Gaps = 28/426 (6%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
             + GL+++ALG GGIK  ++    +Q+D++    +      F+ + F ++ G+  A   
Sbjct: 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQS---NKSLAQKAFDMFYFTINFGSFFASLS 167

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 120
           +  +  N G    FGI    + ++   F LG   Y +  P          V+ +A+    
Sbjct: 168 MPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV 227

Query: 121 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQ 180
           + K +   V  +    + +    +     +   +        + F+              
Sbjct: 228 EGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGL-CCAMVLVMGFVGAGASLQLERARKS 286

Query: 181 CTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVF 240
                V+ V+ V++I  +F           Q ++  + QA  M   +      PA +   
Sbjct: 287 HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---VKPQWFEPAMMQAL 343

Query: 241 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 300
             + +++L P  N V+ P   ++      +T L+++G G+ ++ ++  V   +++     
Sbjct: 344 NPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSWIVVGTIQLMM--- 397

Query: 301 AVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWA 360
                         ++  W  L Y  L   ++   A  +EF ++ AP +M+    S    
Sbjct: 398 ---------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTL 448

Query: 361 SLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFW 420
           S+ +G  +  +    V + T     T  +  + ++    + F++       L  + F  +
Sbjct: 449 SVTVGNLWVLLANVSVKSPT----VTEQIVQTGMSVTAFQMFFFA--GFAILAAIVFALY 502

Query: 421 AARYKY 426
           A  Y+ 
Sbjct: 503 ARSYQM 508

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 1   MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 60
            LF  + ++ +G G +K +++      YDE      ++R A F+ +VF ++ GA IA   
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDE----HDRRRDAGFSIFVFGINLGAFIAPLI 165

Query: 61  VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 99
           V   ++  G+   F ++   + + + ++  G     +  
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPH 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 69/525 (13%), Positives = 138/525 (26%), Gaps = 182/525 (34%)

Query: 26  EQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV-WIEDNKGWQWGFGISTATILLS 84
           E+ D               ++         +   FV   +  N  +     I T     S
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPS 106

Query: 85  IPIFLLGSPFYRNKIPTGSPLTTIFKV--------LTAAIFN------------------ 118
           +   +      R+++   + +   + V        L  A+                    
Sbjct: 107 MMTRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 119 -----TCKSK------------------NSSNAVTE----VHSSPTCSNESRDEGNSNVK 151
                 C S                   NS   V E    +      +  SR + +SN+K
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 152 EKVPSQKPTEDIK-FLNRALRNNPAYPI------------------VQCTV------KEV 186
                      I+  L R L++ P Y                    + C +      K+V
Sbjct: 225 L------RIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 187 EEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATM-----NTKLGSLKVPPASLPVFP 241
            +         I +             T +  +  ++     + +   L  P   L   P
Sbjct: 278 TDFLSAATTTHISLDHH--------SMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNP 327

Query: 242 VIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA 301
               +I   + + +    A           + + +    + +I+  ++  L   + +++ 
Sbjct: 328 RRLSIIAESIRDGL----AT--------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 302 VNSGLVNSSEPLP---ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS 358
               +   S  +P   ++ +W  +                     +D  + +  L     
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIK-------------------SDVMVVVNKLHKY-- 414

Query: 359 WASLA-----------MGYYFSTVLV---------SIVN--NITSTYRH----TPWLFGS 392
             SL               Y    +          SIV+  NI  T+       P+L   
Sbjct: 415 --SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 393 NLNH--YHL------ERFYWLMCILGGLNFLHFLFWAARYKYSST 429
             +H  +HL      ER      +     FL F F   + ++ ST
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMV-----FLDFRFLEQKIRHDST 512

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	431
2xut_A	524	Proton/peptide symporter family protein; transport	99.87
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.84
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.46
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.23
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.09
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.69
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.63
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.36
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.28
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.15
2xut_A	524	Proton/peptide symporter family protein; transport	97.97
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.84
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.11
2cfq_A	417	Lactose permease; transport, transport mechanism,	94.96

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.87  E-value=2.6e-22  Score=206.32  Aligned_cols=384  Identities=19%  Similarity=0.296  Sum_probs=229.3

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++++++.++|.|...|+..++++|++++++   |.+..+.|++++.+.|+|.+++|.+++++.++.||+..|.+.++..
T Consensus       112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~  188 (524)
T 2xut_A          112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLM  188 (524)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            4677888999999999999999999998653   3345678999999999999999999999998899999999999998


Q ss_pred             HHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCC-Cc-ccccC----CCCCCCCCCCcc-cccccccCCC
Q 014067           82 LLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNS-SN-AVTEV----HSSPTCSNESRD-EGNSNVKEKV  154 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~-~~-~~~~~----~~~l~~~~~~~~-~~a~~~~~~~  154 (431)
                      +++.++++..++++.+++|++++..+..+.+..+.+++....+. .. .....    .....+...... .....     
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  263 (524)
T 2xut_A          189 FVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCC-----  263 (524)
T ss_dssp             HHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHH-----
T ss_pred             HHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhh-----
Confidence            88877776665555433333333222222222222211100000 00 00000    000000000000 00000     


Q ss_pred             CCCCCchhHHHHhhhccCCCCCCc-------cccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCC
Q 014067          155 PSQKPTEDIKFLNRALRNNPAYPI-------VQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKL  227 (431)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~  227 (431)
                              ..+......  ...+|       ...+..+.+++|+..+.+++++....++..+.|..+.+..+..+++.+.
T Consensus       264 --------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (524)
T 2xut_A          264 --------AMVLVMGFV--GAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ  333 (524)
T ss_dssp             --------HHHHHHHHH--HTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS
T ss_pred             --------hhhhhhccc--ccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe
Confidence                    000000000  00111       0011122345666777778888888888888888877776666665432


Q ss_pred             CCcccCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 014067          228 GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV  307 (431)
Q Consensus       228 gg~~ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~  307 (431)
                        + ++.+.+..++++..++..|+.+++..|..+|++++   .++.+++.+|+++.+++++.+++.+..+          
T Consensus       334 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------  397 (524)
T 2xut_A          334 --W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM----------  397 (524)
T ss_dssp             --S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----------
T ss_pred             --e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence              1 35667788888899999999999877766664333   5667788899999888887766543110          


Q ss_pred             CCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCC
Q 014067          308 NSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTP  387 (431)
Q Consensus       308 ~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~  387 (431)
                        +.....+.+|+++.+++.++++.+..|...+++.+.+|+++||.++|+++...++|+.+++.+.+.+...+.    .+
T Consensus       398 --~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~  471 (524)
T 2xut_A          398 --DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TE  471 (524)
T ss_dssp             --TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HH
T ss_pred             --cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cc
Confidence              001235788999999999999999999999999999999999999999999999999999999887753221    12


Q ss_pred             CCcCC-CCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 014067          388 WLFGS-NLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS  428 (431)
Q Consensus       388 w~~~~-~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~~~  428 (431)
                      |. ++ +++..  .+.|++.+++++++.++++++.+++++++
T Consensus       472 ~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (524)
T 2xut_A          472 QI-VQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQMQD  510 (524)
T ss_dssp             HH-HHHHSCHH--HHHHHHHHHHHHHHHHHHC----------
T ss_pred             cc-cccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            32 11 11111  12277888888888888888887776543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.84  E-value=1.6e-19  Score=183.79  Aligned_cols=349  Identities=16%  Similarity=0.241  Sum_probs=228.3

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      +++++++.++|.|...|+..++++|++++++.    +|..++++++.+.|+|..++|.+++++.++.||++.|.+.++..
T Consensus       111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~  186 (491)
T 4aps_A          111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGM  186 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            56788899999999999999999999986532    46778999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhcCcceeec---CCCCC-chhHHHHHHHH-------------HHHhhcCCCCCCcccccCCCCCCCCCCCcc
Q 014067           82 LLSIPIFLLGSPFYRNK---IPTGS-PLTTIFKVLTA-------------AIFNTCKSKNSSNAVTEVHSSPTCSNESRD  144 (431)
Q Consensus        82 ~i~~iif~~~~~~~~~~---~p~~~-~~~~~~~v~~~-------------a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  144 (431)
                      +++++++++.++++..+   +|+.. ...+..+....             ......                    ..++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~--------------------~~~~  246 (491)
T 4aps_A          187 FIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVG--------------------WNSL  246 (491)
T ss_dssp             HHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHS--------------------SCCT
T ss_pred             HHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcc--------------------Cccc
Confidence            88877766554433221   12111 11111111100             000000                    0000


Q ss_pred             cc-cccccCCCCCCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHH-
Q 014067          145 EG-NSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT-  222 (431)
Q Consensus       145 ~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~-  222 (431)
                      +. ........    ......+...        .++... ...+++++..+..++++....++..+.+..+.+..+..+ 
T Consensus       247 ~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (491)
T 4aps_A          247 PAYINLLTIVA----IAIPVFYFAW--------MISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER  313 (491)
T ss_dssp             THHHHHHHHHH----HHHHHHHHHH--------HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS
T ss_pred             ccchhhhhHHH----HHHHHHHHHH--------Hhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            00 00000000    0000000000        000000 011345566667788888889999998888766554433 


Q ss_pred             hccCCCCcccCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014067          223 MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAV  302 (431)
Q Consensus       223 ~~~~~gg~~ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~  302 (431)
                      .+.+    ..+.+.+..++++..++..|+.+++.+++.||.      +...+++.+|+++.+++++.++......     
T Consensus       314 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  378 (491)
T 4aps_A          314 VDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY-----  378 (491)
T ss_dssp             CCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC-----
T ss_pred             hccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            3322    146788899999999999999999877665542      5667889999999999988877764210     


Q ss_pred             hcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Q 014067          303 NSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST  382 (431)
Q Consensus       303 ~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~  382 (431)
                        +     +..+.+.+|+++.+++.++++.+..|...+++.+..|++.||.++|+++....+|+.+++.+.+.+.+..  
T Consensus       379 --~-----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--  449 (491)
T 4aps_A          379 --G-----TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--  449 (491)
T ss_dssp             --C-----CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--
T ss_pred             --C-----CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence              0     0124678899999999999999999999999999999999999999999999999999999987765211  


Q ss_pred             CCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 014067          383 YRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS  427 (431)
Q Consensus       383 ~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~~  427 (431)
                                      ....|+.+++++++..++.++..++.+++
T Consensus       450 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          450 ----------------EVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             ----------------TTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            12457778888888888777777766543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.46  E-value=8.7e-13  Score=131.95  Aligned_cols=308  Identities=9%  Similarity=-0.014  Sum_probs=176.4

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccC-chhHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTAT   80 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g-~~~~F~i~~i~   80 (431)
                      ++++.++.++|.|...|...++++|.++++      +|.++++++..+.++|.+++|.+++++.+..| |+..|.+.++.
T Consensus       122 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~  195 (451)
T 1pw4_A          122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC  195 (451)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            467788899999999999999999999754      46789999999999999999999999888888 99999999887


Q ss_pred             HHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCc
Q 014067           81 ILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPT  160 (431)
Q Consensus        81 ~~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~  160 (431)
                      .++..++.++..+.    +|+.....               ..+.          ......  .+.     +..      
T Consensus       196 ~~~~~~~~~~~~~~----~~~~~~~~---------------~~~~----------~~~~~~--~~~-----~~~------  233 (451)
T 1pw4_A          196 AILVALFAFAMMRD----TPQSCGLP---------------PIEE----------YKNDYP--DDY-----NEK------  233 (451)
T ss_dssp             HHHHHHHHHHHCCC----SSTTTCCC---------------SCTT----------TCCC---------------------
T ss_pred             HHHHHHHHHhhccC----CHhhcCCC---------------Chhh----------hccccc--ccc-----hhh------
Confidence            77665544333221    11110000               0000          000000  000     000      


Q ss_pred             hhHHHHhhhccCCCCCCccccccchhhHHHHHH---hHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcc-cCCCC
Q 014067          161 EDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVV---KIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK-VPPAS  236 (431)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~-ip~~~  236 (431)
                                ++ ....+     .+.- .+..+   .+..+.+...+.+..+....+.+.   ..+....| .. ...+.
T Consensus       234 ----------~~-~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-~~~~~~~~  292 (451)
T 1pw4_A          234 ----------AE-QELTA-----KQIF-MQYVLPNKLLWYIAIANVFVYLLRYGILDWSP---TYLKEVKH-FALDKSSW  292 (451)
T ss_dssp             ----------------CC-----THHH-HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH---HHBTTBSC-CCHHHHHH
T ss_pred             ----------hh-ccccc-----ccch-HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcC-CCHHHHHH
Confidence                      00 00000     0000 01111   122222222222222222221111   22222222 10 01234


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          237 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSI-VAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       237 l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      +.+...+..++..++..++.+++.+         ...+.+.++.++.+ ++++...+.                   ...
T Consensus       293 ~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~  344 (451)
T 1pw4_A          293 AYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIVYWMN-------------------PAG  344 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHHTTSC-------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHh-------------------ccc
Confidence            4555566666666666665443210         11122334444433 333332221                   013


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHH-HHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAM-GYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~i-G~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                      +.++.+...++.+++.....+....++.+..|++.||.++|++.....+ |..+++.+.+.+.+..      +       
T Consensus       345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g-------  411 (451)
T 1pw4_A          345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G-------  411 (451)
T ss_dssp             CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C-------
T ss_pred             CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C-------
Confidence            5566777778888888888888889999999999999999999999999 9999999988765321      1       


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067          395 NHYHLERFYWLMCILGGLNFLHFLFWAAR  423 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~~~~~~~  423 (431)
                          ....|++.+++.+++.+++++..++
T Consensus       412 ----~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          412 ----WDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             ----SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                1245777777777777766665443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.23  E-value=4.3e-10  Score=111.90  Aligned_cols=83  Identities=28%  Similarity=0.307  Sum_probs=68.8

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc-cccC-----------
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-DNKG-----------   69 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~-~~~g-----------   69 (431)
                      +++++.+.++|.|...|...++++|.++++      +|...++++..+.++|.++++.+++++. +..+           
T Consensus       120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  193 (438)
T 3o7q_A          120 FLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMS  193 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSC
T ss_pred             HHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence            567888999999999999999999999765      3567899999999999999999999998 5554           


Q ss_pred             --------------chhHHHHHHHHHHHHHHHHHh
Q 014067           70 --------------WQWGFGISTATILLSIPIFLL   90 (431)
Q Consensus        70 --------------~~~~F~i~~i~~~i~~iif~~   90 (431)
                                    |++.|.+.++..++..+++++
T Consensus       194 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          194 PEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                          899998777766666554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.09  E-value=7.7e-11  Score=115.15  Aligned_cols=79  Identities=13%  Similarity=0.024  Sum_probs=68.7

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++++..+.++|.+...|...+++.|.++++      +|.+.++++..+.++|..++|.+++++.++.||+..|.+.++..
T Consensus        91 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  164 (375)
T 2gfp_A           91 LIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC  164 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            456778889999999999999999998654      36778999999999999999999999999899999999888877


Q ss_pred             HHHHH
Q 014067           82 LLSIP   86 (431)
Q Consensus        82 ~i~~i   86 (431)
                      ++..+
T Consensus       165 ~~~~~  169 (375)
T 2gfp_A          165 AGVTF  169 (375)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            76654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.69  E-value=1.2e-08  Score=101.58  Aligned_cols=139  Identities=10%  Similarity=0.027  Sum_probs=88.5

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      .+.+++.+..++..++..++.+++.+|           +.+.+|.++.+++++..++.                     .
T Consensus       263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~---------------------~  310 (417)
T 2cfq_A          263 YVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA---------------------T  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTC---------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHh---------------------c
Confidence            344555555566666666665544332           23455666665554443221                     1


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHH-HHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL-SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                      +.++++...++.+++.....+....++.+..|++.||..+|+ +....++|+.+++.+.+.+....              
T Consensus       311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~--------------  376 (417)
T 2cfq_A          311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--------------  376 (417)
T ss_dssp             SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS--------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc--------------
Confidence            344555555666776656666678899999999999999998 57778899999998887664211              


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067          395 NHYHLERFYWLMCILGGLNFLHFLFWAAR  423 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~~~~~~~  423 (431)
                         .....|.+.+++++++.++.++..|+
T Consensus       377 ---g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          377 ---GFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence               12234677777777777766555543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.63  E-value=4.5e-07  Score=91.44  Aligned_cols=77  Identities=21%  Similarity=0.259  Sum_probs=58.1

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc--------cCchhH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN--------KGWQWG   73 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~--------~g~~~~   73 (431)
                      +++++.+.++|.|+..+....+++|..+++      +|....+++..+..+|.++++.++..+...        .+|+..
T Consensus       129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4gc0_A          129 FVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYM  202 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHH
Confidence            567889999999999999999999998754      466778888899999999988887665432        345666


Q ss_pred             HHHHHHHHHHH
Q 014067           74 FGISTATILLS   84 (431)
Q Consensus        74 F~i~~i~~~i~   84 (431)
                      +.+..+..++.
T Consensus       203 ~~~~~~~~~~~  213 (491)
T 4gc0_A          203 FASECIPALLF  213 (491)
T ss_dssp             HHTTHHHHHHH
T ss_pred             hhhhhhhhhhh
Confidence            65555444443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.36  E-value=5.5e-06  Score=82.18  Aligned_cols=145  Identities=11%  Similarity=-0.048  Sum_probs=104.3

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.++..+...+..|+.+++.++..+|           +-+.+|.++.+++.+..++....                 .
T Consensus        65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~-----------------~  116 (451)
T 1pw4_A           65 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA-----------------T  116 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc-----------------c
Confidence            3456666677777778877766544333           34677888888888777662100                 0


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                      .++++++...++.|++.....+...+++.+..|++.|+..+|++....++|..+++.+++.+....+     +|-     
T Consensus       117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----~w~-----  186 (451)
T 1pw4_A          117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DWH-----  186 (451)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CST-----
T ss_pred             ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cHH-----
Confidence            2456788889999999999999999999999999999999999999999999999999876532110     143     


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067          395 NHYHLERFYWLMCILGGLNFLHFLFWAAR  423 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~~~~~~~  423 (431)
                            ..|++.+++.++..++..+..++
T Consensus       187 ------~~f~~~~~~~~~~~~~~~~~~~~  209 (451)
T 1pw4_A          187 ------AALYMPAFCAILVALFAFAMMRD  209 (451)
T ss_dssp             ------TCTHHHHHHHHHHHHHHHHHCCC
T ss_pred             ------HHHHHHHHHHHHHHHHHHhhccC
Confidence                  22666677766666555554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.28  E-value=7.4e-06  Score=80.99  Aligned_cols=114  Identities=12%  Similarity=0.034  Sum_probs=92.0

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+..++..|+.+++.+++.+|           +-+.+|.++.+++.+..+....                  .
T Consensus        64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~------------------~  114 (438)
T 3o7q_A           64 GLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE------------------I  114 (438)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------T
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc------------------c
Confidence            4556777777778888888876655443           3477888888888777644320                  2


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .++++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+++.+.
T Consensus       115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788899999999999999999999999999999999999999999999999999987765

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.15  E-value=1.9e-05  Score=79.52  Aligned_cols=142  Identities=13%  Similarity=0.065  Sum_probs=105.8

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHH-HhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIP-FARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL  313 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~p-l~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~  313 (431)
                      +++.+...+...+..|+.+++.++ +.||           +-+.+|.++.+++.+.+++.                    
T Consensus        57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------  105 (491)
T 4aps_A           57 ASIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLALP--------------------  105 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHSC--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence            456777777888888888887766 4443           23667777777766655442                    


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchh--hhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcC
Q 014067          314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM--RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG  391 (431)
Q Consensus       314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~--~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~  391 (431)
                       .+.++++...++.|+++....|....++.+..|++.  |+..++++....++|..+++.+++.+....      +|-  
T Consensus       106 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~~--  176 (491)
T 4aps_A          106 -FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GYH--  176 (491)
T ss_dssp             -CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CHH--
T ss_pred             -hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hHH--
Confidence             345677788899999999999999999999999988  888888899999999999999988775311      232  


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 014067          392 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  425 (431)
Q Consensus       392 ~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~  425 (431)
                               ..|++.+++.+++.+++.+..+++.
T Consensus       177 ---------~~f~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4aps_A          177 ---------VAFSLAAIGMFIGLLVYYFGGKKTL  201 (491)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHhCcccc
Confidence                     3466667777777777666666554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.97  E-value=3.3e-05  Score=78.45  Aligned_cols=142  Identities=12%  Similarity=0.045  Sum_probs=97.0

Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067          236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI  315 (431)
Q Consensus       236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  315 (431)
                      ++.+...+..++..|+.+++.    +|.      ....+-+.+|.++.+++.+..++.                    +.
T Consensus        58 ~~~~~~~~~~~~~~~~~G~l~----dr~------~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~  107 (524)
T 2xut_A           58 DVFHSFVIGVYFFPLLGGWIA----DRF------FGKYNTILWLSLIYCVGHAFLAIF--------------------EH  107 (524)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHH----TTS------SCSHHHHHHHHHHHHHHHHHHHHT--------------------SS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHH------hcchHHHHHHHHHHHHHHHHHHHh--------------------cc
Confidence            345555566666667766654    332      022234667777777776665543                    12


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHH---HHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCC
Q 014067          316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL---SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS  392 (431)
Q Consensus       316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl---~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~  392 (431)
                      +.++++...++.|+++....|...+++.+..|++.|+..+++   +....++|..+++.+++.+....      +|    
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~----  177 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA----  177 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH----
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH----
Confidence            567788889999999999999999999999999999877666   88888999999998877664211      22    


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 014067          393 NLNHYHLERFYWLMCILGGLNFLHFLFWAARY  424 (431)
Q Consensus       393 ~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~  424 (431)
                             ...|++.+++.++..+++.+..+++
T Consensus       178 -------~~~f~~~~~~~~~~~~~~~~~~~~~  202 (524)
T 2xut_A          178 -------AVAFGIPGVLMFVATVFFWLGRKRY  202 (524)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence                   2446666666666666555444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.84  E-value=1.3e-05  Score=77.66  Aligned_cols=111  Identities=11%  Similarity=-0.007  Sum_probs=87.6

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+...+..|+.+++.++..||           +-+.+|.++.+++.+..++.                     
T Consensus        38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   85 (375)
T 2gfp_A           38 QSVMGAYLLTYGVSQLFYGPISDRVGRR-----------PVILVGMSIFMLATLVAVTT---------------------   85 (375)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHTTSCCC-----------CCCHHHHHHHHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHh---------------------
Confidence            3456666777777777777765433222           23557777777777776664                     


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+.++++...++.+++.....+....++.+..|++.|+..+|++....++|..+++.+++.+.
T Consensus        86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  148 (375)
T 2gfp_A           86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD  148 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            256678888999999999999999999999999999999999999999999999999988764

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.11  E-value=0.0046  Score=61.75  Aligned_cols=121  Identities=12%  Similarity=0.051  Sum_probs=83.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC----Ccc
Q 014067          239 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE----PLP  314 (431)
Q Consensus       239 ~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~  314 (431)
                      +.-.+..++..++.+++-+++.||           +-+.++.++..++-+..++...       .........    ...
T Consensus        62 s~~~~G~~iG~~~~G~laDr~GRk-----------~~l~~~~~l~~i~~i~~a~~~~-------~~~~~~~~~~~~~~~a  123 (491)
T 4gc0_A           62 ASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISGVGSAWPEL-------GFTSINPDNTVPVYLA  123 (491)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHHHHHHHCTTT-------TTSCSSSSSSCCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHhh-------hhhhhcchhHHHHHHh
Confidence            333444555666666665555544           2356677777766666554320       000000000    012


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN  377 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~  377 (431)
                      .+++.++...++.|+|+-...+....++.+.+|++.|+..++++.....+|..++..+.....
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence            467788999999999999999999999999999999999999999999999999888776654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=94.96  E-value=0.0058  Score=60.06  Aligned_cols=76  Identities=9%  Similarity=0.025  Sum_probs=56.3

Q ss_pred             HHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHHHHHHH
Q 014067            9 VALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI   87 (431)
Q Consensus         9 i~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~-~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~i~~ii   87 (431)
                      .+++.+.+.+...+...|.++++      .|..++.+ +..+.++|+.++|.++|++.++.|+...|.+.++..+++.++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~  395 (417)
T 2cfq_A          322 HMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI  395 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            34444455555667777777532      35566777 456777999999999999998889999999988888888776


Q ss_pred             HHh
Q 014067           88 FLL   90 (431)
Q Consensus        88 f~~   90 (431)
                      .+.
T Consensus       396 ~~~  398 (417)
T 2cfq_A          396 SVF  398 (417)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	431
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.33
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.91
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.42
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.55

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.3e-11  Score=120.20  Aligned_cols=83  Identities=10%  Similarity=0.091  Sum_probs=67.4

Q ss_pred             hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc-ccCchhHHHHHHHH
Q 014067            2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-NKGWQWGFGISTAT   80 (431)
Q Consensus         2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~-~~g~~~~F~i~~i~   80 (431)
                      ++++..+.++|.|...|...++++|.++++      +|..+++++..+.++|.++++.+++.+.. ..+|+..|.+.++.
T Consensus       119 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~  192 (447)
T d1pw4a_         119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC  192 (447)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhh
Confidence            456777889999999999999999999754      36778999999999999999998887655 35899999988887


Q ss_pred             HHHHHHHHHh
Q 014067           81 ILLSIPIFLL   90 (431)
Q Consensus        81 ~~i~~iif~~   90 (431)
                      .++..++.+.
T Consensus       193 ~~~~~~~~~~  202 (447)
T d1pw4a_         193 AILVALFAFA  202 (447)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7766554444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=5.6e-09  Score=98.90  Aligned_cols=114  Identities=11%  Similarity=0.041  Sum_probs=85.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhH
Q 014067          274 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL  353 (431)
Q Consensus       274 ~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~  353 (431)
                      +-+.++.++.+++++...+.                     .+.++++...++.+++..+..+...+++.+..|++.|+.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  348 (417)
T d1pv7a_         290 NALLLAGTIMSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSAT  348 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHH
T ss_pred             cchhhhHHHHHHhhhccccc---------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHH
Confidence            44566666666665554432                     356677888899999999999999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 014067          354 ATSLS-WASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK  425 (431)
Q Consensus       354 ~~gl~-~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~  425 (431)
                      .+|+. .+..++|..+++.+.+.+.+..+                 ....|++.++++++..++..+..|+-+
T Consensus       349 ~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         349 IYLVCFCFFKQLAMIFMSVLAGNMYESIG-----------------FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHHHHHHHHHC-----------------HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99985 46678999999988877653221                 224577788888888877777766543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=2.9e-06  Score=81.31  Aligned_cols=144  Identities=11%  Similarity=-0.049  Sum_probs=105.0

Q ss_pred             CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067          235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP  314 (431)
Q Consensus       235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  314 (431)
                      +++.+...+...+..|+.+++.++..+|           +-+.+|+++.+++.+..+++...                 .
T Consensus        62 g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~-----------------~  113 (447)
T d1pw4a_          62 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA-----------------T  113 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHhhccccchh-----------------h
Confidence            4566777777778888888877655443           34667888888888777665311                 2


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067          315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL  394 (431)
Q Consensus       315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~  394 (431)
                      .++++++...++.++++....+....++.+..|++.|+..+|++....++|..+++.+........     .+|-     
T Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-----~~w~-----  183 (447)
T d1pw4a_         114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-----NDWH-----  183 (447)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-----CCST-----
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh-----hccc-----
Confidence            356678888999999999999999999999999999999999999999999999988776654222     1332     


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014067          395 NHYHLERFYWLMCILGGLNFLHFLFWAA  422 (431)
Q Consensus       395 n~~~l~~~f~~la~l~~v~~i~~~~~~~  422 (431)
                            ..|++.+.+.++..++.++..+
T Consensus       184 ------~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         184 ------AALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             ------TCTHHHHHHHHHHHHHHHHHCC
T ss_pred             ------ccchhhhhhHHHHHHHHHHhcc
Confidence                  2255556666555555554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00056  Score=63.19  Aligned_cols=83  Identities=7%  Similarity=-0.060  Sum_probs=68.0

Q ss_pred             hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067            3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVF-CLSCGALIAVTFVVWIEDNKGWQWGFGISTATI   81 (431)
Q Consensus         3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~-~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~   81 (431)
                      ++...+.+++.+...|...++..|.++++      .|.+.++..+. +.++|.+++|.+.|++.+++||+..|.+.++..
T Consensus       316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~  389 (417)
T d1pv7a_         316 VILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA  389 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCGG------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence            45566788899999999999999999754      35677887664 556999999999999999999999999988888


Q ss_pred             HHHHHHHHhc
Q 014067           82 LLSIPIFLLG   91 (431)
Q Consensus        82 ~i~~iif~~~   91 (431)
                      ++..++..+.
T Consensus       390 ~~~~~~~~~~  399 (417)
T d1pv7a_         390 LGFTLISVFT  399 (417)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8777665543