Citrus Sinensis ID: 014088

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
Protein Sequence
MCCFDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccEEccccccccccccccc
Coil and Loop (DISEMBL)
MCCFDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTniasgtsentrvvidhgAVPIFVRLlssptddvREQAVWALGnvagdspkcrdlvlsngalmPLLAQFNEHAKLSMLRNATWTlsnfcrgkpqplfeqtrpalpaLERLihsnddevLTDACWALsylsdgtnDKIQAVIEAGVCPRLvellrhpspsvlipalrtvgnivtgddmqtqciinhqalPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISnatsggsneQIKFLVSqgcikplcdllncpdpriVTVCLEGLENILKAGEAeknmgntggvNLFAQAIDDAEGLEKIEnlqshdntEIYEKAVKILETYwveededeplppgdatqagfgfagnglpvpsggfnfg
Flexible Loop (DISEMBL)
MCCFDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAlgnvagdspKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLrhpspsvlipALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEnlqshdnteiYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Low Complexity Region (SEG)
MCCFDLRFECILISLFVDQfffhcffsccfGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNqiqaiieagiigPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVeededeplppgdATQAGFGFAGNGLPVPSGGFNFG
Disordered region (IsUnstruct)
*CCFDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE**********************************
Disordered Region (DISOPRED)
MCCFDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPP**A******************FNF*
Disordered Region (DISEMBL)
MCCFDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Disordered Region (DISPRO)
***FDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED**EPLPPG************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCCFDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	431	2.2.26 [Sep-21-2011]
Q96321	532	Importin subunit alpha-1	yes	no	0.972	0.787	0.790	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.923	0.755	0.823	0.0
Q9SLX0	534	Importin subunit alpha-1b	yes	no	0.928	0.749	0.810	0.0
Q71VM4	526	Importin subunit alpha-1a	no	no	0.860	0.705	0.860	0.0
O04294	531	Importin subunit alpha-2	no	no	0.925	0.751	0.755	1e-176
Q76P29	516	Importin subunit alpha-B	yes	no	0.881	0.736	0.635	1e-136
O35345	536	Importin subunit alpha-7	yes	no	0.902	0.725	0.605	1e-128
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.902	0.725	0.605	1e-128
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.902	0.725	0.605	1e-128
O60684	536	Importin subunit alpha-7	yes	no	0.902	0.725	0.605	1e-128

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/421 (79%), Positives = 372/421 (88%), Gaps = 2/421 (0%)

Query: 12  LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 71
           +IS  V   F        + A+QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP
Sbjct: 111 VISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASP 170

Query: 72  TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 131
           +DDVREQAVWALGNVAGDSP+CRDLVL  GAL+PLL Q NEHAKLSMLRNATWTLSNFCR
Sbjct: 171 SDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCR 230

Query: 132 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 191
           GKPQP F+Q +PALPALERLIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LV
Sbjct: 231 GKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLV 290

Query: 192 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 251
           ELL H SPSVLIPALRTVGNIVTGDD+QTQC+IN  ALPCL +LLTQN+KKSIKKEACWT
Sbjct: 291 ELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWT 350

Query: 252 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS 311
           ISNITAGN +QIQ ++EA +I PLV+LL NAEF+IKKEAAWAISNATSGGS++QIK+LV 
Sbjct: 351 ISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVE 410

Query: 312 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 371
           QGCIKPLCDLL CPDPRI+TVCLEGLENILK GEAEKN+G+TG +N +AQ IDDAEGLEK
Sbjct: 411 QGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEK 470

Query: 372 IENLQSHDNTEIYEKAVKILETYWVEEDEDEP-LPPG-DATQAGFGFAGNGLPVPSGGFN 429
           IENLQSHDN EIYEKAVKILETYW+EE++DE   PPG D +QAGF F GN  PVPSGGFN
Sbjct: 471 IENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFN 530

Query: 430 F 430
           F
Sbjct: 531 F 531

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.
Arabidopsis thaliana (taxid: 3702)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/402 (82%), Positives = 363/402 (90%), Gaps = 4/402 (0%)

Query: 30  FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89
           +  +QFEAAWALTNIASGTSENT+VVID+G+VPIF+RLLSSP+DDVREQAVWALGN+AGD
Sbjct: 130 YPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGD 189

Query: 90  SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 149
           SPK RDLVL +GAL+ LLAQFNE AKLSMLRNATWTLSNFCRGKPQPLFEQT+ ALP L 
Sbjct: 190 SPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQTKAALPTLG 249

Query: 150 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
           RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVC RLVELL H SPSVLIPALRTV
Sbjct: 250 RLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPSVLIPALRTV 309

Query: 210 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 269
           GNIVTGDD+QTQ +I+H ALPCL++LLTQNYKKSIKKEACWTISNITAGN NQIQ +IEA
Sbjct: 310 GNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQIQIVIEA 369

Query: 270 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 329
           GII PLV LL NAEFEIKKEAAWAISNATSGG+++QIKFLVSQGCIKPLCDLL CPDPRI
Sbjct: 370 GIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRI 429

Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           VTVCLEGLENILK GEA+K++GNT GVN++AQ ID+AEGLEKIENLQSHDNTEIYEKAVK
Sbjct: 430 VTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVK 489

Query: 390 ILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 431
           ILETYW+EE ED P+      +  F F G  + +PSGGFNF 
Sbjct: 490 ILETYWLEE-EDVPV---SLNEDQFEFGGADISLPSGGFNFS 527

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/402 (81%), Positives = 360/402 (89%), Gaps = 2/402 (0%)

Query: 30  FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89
           +  +QFEAAWALTNIASGTS+NT+VV++ GAVPIFV+LLSSP++DVREQAVWALGNVAGD
Sbjct: 135 YPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGD 194

Query: 90  SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 149
           SPKCRDLVL++G L PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP FEQ +PAL AL+
Sbjct: 195 SPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSALQ 254

Query: 150 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
           RLIHS D+EVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL HPS SVLIPALRTV
Sbjct: 255 RLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIPALRTV 314

Query: 210 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 269
           GNIVTGDDMQTQC+I+HQALPCLL+LLT N+KKSIKKEACWTISNITAGN  QIQA+I A
Sbjct: 315 GNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVINA 374

Query: 270 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 329
            II PLV+LL  AEF+IKKEAAWAISNATSGG+++QIK+LV+QGCIKPLCDLL CPDPRI
Sbjct: 375 NIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRI 434

Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           VTVCLEGLENILK GEAEKN+G  G VN +AQ IDDAEGLEKIENLQSHDNTEIYEKAVK
Sbjct: 435 VTVCLEGLENILKVGEAEKNLG-AGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVK 493

Query: 390 ILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 431
           +LE+YW+EE ED+ +P GD  Q GF F      VPSGGFNFG
Sbjct: 494 MLESYWLEE-EDDAMPSGDNAQNGFNFGNQQPNVPSGGFNFG 534

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/372 (86%), Positives = 344/372 (92%), Gaps = 1/372 (0%)

Query: 30  FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89
           F  +QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAGD
Sbjct: 129 FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD 188

Query: 90  SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 149
           SPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPAL 
Sbjct: 189 SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALA 248

Query: 150 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
           RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTV
Sbjct: 249 RLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 308

Query: 210 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 269
           GNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +QIQA+I A
Sbjct: 309 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINA 368

Query: 270 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 329
           GIIGPLVNLL  AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD RI
Sbjct: 369 GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRI 428

Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           VTVCLEGLENILK GE +K +   G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKAVK
Sbjct: 429 VTVCLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVK 487

Query: 390 ILETYWVEEDED 401
           ILE YW++E++D
Sbjct: 488 ILEAYWMDEEDD 499

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  618 bits (1594), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 303/401 (75%), Positives = 348/401 (86%), Gaps = 2/401 (0%)

Query: 30  FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89
           F  +QFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQAVWALGNVAGD
Sbjct: 132 FPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGD 191

Query: 90  SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 149
           SPKCRDLVLS GA+ PLL+QFNE+ KLSMLRNATWTLSNFCRGKP P FEQT+PALP LE
Sbjct: 192 SPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLE 251

Query: 150 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
           RL+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL H SPSVLIPALRT+
Sbjct: 252 RLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTI 311

Query: 210 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 269
           GNIVTGDD+QTQ +++ QALPCLL+LL  NYKKSIKKEACWTISNITAGN +QIQA+I+A
Sbjct: 312 GNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDA 371

Query: 270 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 329
           GII  LV +L +AEFE+KKEAAW ISNATSGG+++QIKF+VSQGCIKPLCDLL CPD ++
Sbjct: 372 GIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKV 431

Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           VTVCLE LENIL  GEAEKN+G+TG  NL+AQ ID+AEGLEKIENLQSHDN +IY+KAVK
Sbjct: 432 VTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVK 491

Query: 390 ILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 430
           ILET+W E++E+E      A Q+GF F      VP G FNF
Sbjct: 492 ILETFWTEDNEEEGNDENHAPQSGFQFGSTN--VPPGQFNF 530

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  483 bits (1244), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/390 (63%), Positives = 300/390 (76%), Gaps = 10/390 (2%)

Query: 30  FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89
           F  +QFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+AGD
Sbjct: 124 FPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGD 183

Query: 90  SPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 147
           S  CRDLVLS+ AL PLL+     A  K+SM+RNATWTLSNFCRGKPQP FE  R +LP 
Sbjct: 184 SHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPV 243

Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L +LI+  D+EVL DACWALSYLSDG+N++IQ VI+A VC ++VELL HP+ +V  PALR
Sbjct: 244 LAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPALR 303

Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 267
           T+GNIVTGDD QTQ +++ QAL  LL+LL Q+ K++I+KEACWTISNITAG+ NQIQ +I
Sbjct: 304 TIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQVI 362

Query: 268 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
           +A II  LV LL NAEFEI+KEAAWAISNATS G+ +QI FLVSQGC+KPLCDLL   DP
Sbjct: 363 DANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDP 422

Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           RI+ V LEG+ENIL AG+ E       GVN + + I+DA+GL KI +LQ H N + +EK 
Sbjct: 423 RIINVALEGIENILVAGKKE---AQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKV 479

Query: 388 VKILETYWVEEDEDEPLPPGDATQAGFGFA 417
            +I+ TY  +E EDE    GD    G  F+
Sbjct: 480 SRIISTYLEDEQEDE----GDLMPEGSSFS 505

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  458 bits (1179), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/393 (60%), Positives = 289/393 (73%), Gaps = 4/393 (1%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFEAAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  
Sbjct: 141 LQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSL 200

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
           CRD VL+   L PLL    +  +L+M RNA W LSN CRGK P P F +  P LP L RL
Sbjct: 201 CRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRL 260

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           + S+D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGN
Sbjct: 261 LFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGN 320

Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 271
           IVTGDD+QTQ I+N  ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I
Sbjct: 321 IVTGDDIQTQVILNCSALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANI 379

Query: 272 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 331
              L+ +L  AEF  +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV 
Sbjct: 380 FPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQ 439

Query: 332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
           V L GLENIL+ GE E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++
Sbjct: 440 VALNGLENILRLGEQESKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLI 498

Query: 392 ETYWVEEDEDEPLPPG-DATQAGFGFAGNGLPV 423
           E Y+  ED+D  L P  D TQ  F F     P+
Sbjct: 499 EHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPM 531

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/393 (60%), Positives = 289/393 (73%), Gaps = 4/393 (1%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFEAAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  
Sbjct: 141 LQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSV 200

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
           CRD VL+   L PLL    +  +L+M RNA W LSN CRGK P P F +  P LP L RL
Sbjct: 201 CRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRL 260

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           + S+D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGN
Sbjct: 261 LFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGN 320

Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 271
           IVTGDD+QTQ I+N  ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I
Sbjct: 321 IVTGDDIQTQVILNCSALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANI 379

Query: 272 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 331
              L+ +L  AEF  +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV 
Sbjct: 380 FPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQ 439

Query: 332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
           V L GLENIL+ GE E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++
Sbjct: 440 VALNGLENILRLGEQEGKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLI 498

Query: 392 ETYWVEEDEDEPLPPG-DATQAGFGFAGNGLPV 423
           E Y+  ED+D  L P  D TQ  F F     P+
Sbjct: 499 EHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPM 531

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/393 (60%), Positives = 289/393 (73%), Gaps = 4/393 (1%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFEAAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  
Sbjct: 141 LQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSV 200

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
           CRD VL+   L PLL    +  +L+M RNA W LSN CRGK P P F +  P LP L RL
Sbjct: 201 CRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRL 260

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           + S+D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGN
Sbjct: 261 LFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGN 320

Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 271
           IVTGDD+QTQ I+N  ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I
Sbjct: 321 IVTGDDIQTQVILNCSALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANI 379

Query: 272 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 331
              L+ +L  AEF  +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV 
Sbjct: 380 FPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQ 439

Query: 332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
           V L GLENIL+ GE E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++
Sbjct: 440 VALNGLENILRLGEQEGKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLI 498

Query: 392 ETYWVEEDEDEPLPPG-DATQAGFGFAGNGLPV 423
           E Y+  ED+D  L P  D TQ  F F     P+
Sbjct: 499 EHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPM 531

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/393 (60%), Positives = 289/393 (73%), Gaps = 4/393 (1%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFEAAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  
Sbjct: 141 LQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSV 200

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
           CRD VL+   L PLL    +  +L+M RNA W LSN CRGK P P F +  P LP L RL
Sbjct: 201 CRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRL 260

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           + S+D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGN
Sbjct: 261 LFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGN 320

Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 271
           IVTGDD+QTQ I+N  ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I
Sbjct: 321 IVTGDDIQTQVILNCSALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANI 379

Query: 272 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 331
              L+ +L  AEF  +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV 
Sbjct: 380 FPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQ 439

Query: 332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
           V L GLENIL+ GE E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++
Sbjct: 440 VALNGLENILRLGEQEGKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLI 498

Query: 392 ETYWVEEDEDEPLPPG-DATQAGFGFAGNGLPV 423
           E Y+  ED+D  L P  D TQ  F F     P+
Sbjct: 499 EHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPM 531

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
255548535	454	importin alpha, putative [Ricinus commun	0.791	0.751	0.875	0.0
255542844	531	importin alpha, putative [Ricinus commun	0.948	0.770	0.859	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.969	0.785	0.842	0.0
356576835	532	PREDICTED: importin subunit alpha-1-like	0.948	0.768	0.856	0.0
224122988	529	predicted protein [Populus trichocarpa]	0.948	0.773	0.853	0.0
224130302	529	predicted protein [Populus trichocarpa]	0.948	0.773	0.851	0.0
224123916	529	predicted protein [Populus trichocarpa]	0.951	0.775	0.841	0.0
224128392	538	predicted protein [Populus trichocarpa]	0.930	0.745	0.858	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.951	0.772	0.846	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.951	0.772	0.844	0.0

>gi|255548535|ref|XP_002515324.1| importin alpha, putative [Ricinus communis] gi|223545804|gb|EEF47308.1| importin alpha, putative [Ricinus communis]

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/402 (87%), Positives = 377/402 (93%)

Query: 30  FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89
           F  +QFEAAWALTNIASGTSENT+VVIDHGAVPIF++LLSSPTDDVREQAVWALGN+AGD
Sbjct: 53  FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFIKLLSSPTDDVREQAVWALGNIAGD 112

Query: 90  SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 149
           SPKCRD VL +GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP FEQT+PALPALE
Sbjct: 113 SPKCRDFVLGHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPSFEQTKPALPALE 172

Query: 150 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
           RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP+VLIPALRTV
Sbjct: 173 RLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPTVLIPALRTV 232

Query: 210 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 269
           GNIVTGDDMQTQC+INHQALPCLL+LLT NYKKSIKKEACWTISNITAGNVNQIQAII+A
Sbjct: 233 GNIVTGDDMQTQCMINHQALPCLLNLLTHNYKKSIKKEACWTISNITAGNVNQIQAIIDA 292

Query: 270 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 329
            +IGPL+ LL  AEFEIKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCDLL CPDPRI
Sbjct: 293 DLIGPLIQLLQIAEFEIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLICPDPRI 352

Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           VTVCLEGLENILK GEAEKN+GNTG  NL+AQ ID+AEGLEKIENLQSHDN +IYEKAVK
Sbjct: 353 VTVCLEGLENILKVGEAEKNLGNTGDANLYAQMIDEAEGLEKIENLQSHDNNDIYEKAVK 412

Query: 390 ILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 431
           ILETYW+EEDEDE L P DA+Q+GF F GN +P PSGGF FG
Sbjct: 413 ILETYWLEEDEDEALAPADASQSGFHFGGNEVPAPSGGFKFG 454

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/412 (85%), Positives = 379/412 (91%), Gaps = 3/412 (0%)

Query: 21  FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 80
           F        F  +QFEAAWALTNIASGTSENTRVVIDHGAVPIFV+LL+SP+DDVREQAV
Sbjct: 120 FVEFLMREDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQAV 179

Query: 81  WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140
           WALGNVAGDSPKCRDLVL NGAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FEQ
Sbjct: 180 WALGNVAGDSPKCRDLVLGNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFEQ 239

Query: 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 200
            +PALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260
           VLIPALRTVGNIVTGDDMQTQCIINHQALPCLL+LLT NYKKSIKKEACWTISNITAGN 
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNK 359

Query: 261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
            QIQA+IEA IIGPLV+LL NAEF+IKKEAAWAISNATSGG+++QIK+LVSQGCIKPLCD
Sbjct: 360 EQIQAVIEANIIGPLVHLLENAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCD 419

Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNT-GGVNLFAQAIDDAEGLEKIENLQSHD 379
           LL CPDPRIVTVCLEGLENILK GEA+KN+GN  GGVNL+AQ IDDAEGLEKIENLQSHD
Sbjct: 420 LLICPDPRIVTVCLEGLENILKVGEADKNLGNNDGGVNLYAQMIDDAEGLEKIENLQSHD 479

Query: 380 NTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLP-VPSGGFNF 430
           N EIYEKAVKILETYW+EE EDE +PPGDA+Q+GF F G+ +P +PSGGFNF
Sbjct: 480 NIEIYEKAVKILETYWLEE-EDETMPPGDASQSGFQFGGSDMPTIPSGGFNF 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/420 (84%), Positives = 380/420 (90%), Gaps = 2/420 (0%)

Query: 12  LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 71
           +I   V   F        F  +QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL+SP
Sbjct: 113 VIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172

Query: 72  TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 131
           +DDVREQAVWALGNVAGDSP+CRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCR
Sbjct: 173 SDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCR 232

Query: 132 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 191
           GKPQP F+Q +PALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV
Sbjct: 233 GKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292

Query: 192 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 251
           ELL HPSPSVLIPALRTVGNIVTGDDMQTQ IINHQALPCLL+LLT NYKKSIKKEACWT
Sbjct: 293 ELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWT 352

Query: 252 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS 311
           ISNITAGN  QIQA+IEA +I PLVNLL NAEF+IKKEAAWAISNATSGGS+EQIKFLVS
Sbjct: 353 ISNITAGNKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVS 412

Query: 312 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 371
           QGCIKPLCDLL CPDPRIVTVCLEGLENILK GEA+KN+GNTG VNL+AQ ID+AEGLEK
Sbjct: 413 QGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEK 472

Query: 372 IENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLP-VPSGGFNF 430
           IENLQSHDNTEIYEKAVKILETYW+EE EDE +PPGDA+Q+GF F  +  P VPSGGFNF
Sbjct: 473 IENLQSHDNTEIYEKAVKILETYWLEE-EDETMPPGDASQSGFNFGSSDAPTVPSGGFNF 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/411 (85%), Positives = 377/411 (91%), Gaps = 2/411 (0%)

Query: 21  FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 80
           F        F  +QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL+SP+DDVREQAV
Sbjct: 122 FVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAV 181

Query: 81  WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140
           WALGNVAGDSP+CRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 182 WALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQ 241

Query: 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 200
            +PALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPS
Sbjct: 242 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 301

Query: 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260
           VLIPALRTVGNIVTGDDMQTQ IINHQALPCLL+LLT NYKKSIKKEACWTISNITAGN 
Sbjct: 302 VLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNK 361

Query: 261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
            QIQA+IEA +I PLVNLL NAEF+IKKEAAWAISNATSGGS+EQIKFLVSQGCIKPLCD
Sbjct: 362 QQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCD 421

Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 380
           LL CPDPRIVTVCLEGLENILK GEA+KN+GNTG VNL+AQ ID+AEGLEKIENLQSHDN
Sbjct: 422 LLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSHDN 481

Query: 381 TEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLP-VPSGGFNF 430
           TEIYEKAVKILETYW+EE EDE +PPGDA+Q+GF F  +  P VPSGGFNF
Sbjct: 482 TEIYEKAVKILETYWLEE-EDETMPPGDASQSGFNFGSSDAPAVPSGGFNF 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122988|ref|XP_002318966.1| predicted protein [Populus trichocarpa] gi|222857342|gb|EEE94889.1| predicted protein [Populus trichocarpa]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/410 (85%), Positives = 375/410 (91%), Gaps = 1/410 (0%)

Query: 21  FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 80
           F        F  +QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL+SP+DDVREQAV
Sbjct: 120 FVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLASPSDDVREQAV 179

Query: 81  WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140
           WALGNVAGDSP+CRDLVL NGAL+PLLAQ NE+AKLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPRCRDLVLGNGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 200
            +PALPAL RLIHS+D+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPS
Sbjct: 240 VKPALPALARLIHSDDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260
           VLIPALRTVGNIVTGDDMQTQCIINHQALPCLL+LL  NYKKSIKKEACWTISNITAGN 
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLANNYKKSIKKEACWTISNITAGNK 359

Query: 261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
            QIQA+IEA IIGPLVNLL NAEF+IKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCD
Sbjct: 360 EQIQAVIEANIIGPLVNLLQNAEFDIKKEAAWAISNATSGGAHEQIKYLVSQGCIKPLCD 419

Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 380
           LL CPDPRIVTVCLEGLENILK GEA+KN+  TGGVNL+AQ IDDAEGLEKIENLQSHDN
Sbjct: 420 LLICPDPRIVTVCLEGLENILKVGEADKNVSETGGVNLYAQMIDDAEGLEKIENLQSHDN 479

Query: 381 TEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 430
           TEIYEKAVKILETYW+EE EDE +PPGDA+Q+GF F G    VPSGGFNF
Sbjct: 480 TEIYEKAVKILETYWLEE-EDETMPPGDASQSGFQFGGEAPAVPSGGFNF 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/410 (85%), Positives = 371/410 (90%), Gaps = 1/410 (0%)

Query: 21  FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 80
           F        F  +QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL SP+DDVREQAV
Sbjct: 121 FVELLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAV 180

Query: 81  WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140
           WALGNVAGDSPKCRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQPLFE+
Sbjct: 181 WALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPLFEK 240

Query: 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 200
            RPALPALERL+HS D+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPS
Sbjct: 241 VRPALPALERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 300

Query: 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260
           VL+PALRTVGNIVTGDDMQTQCIIN  ALPCLL LLT N+KKSIKKEACWTISNITAGN 
Sbjct: 301 VLVPALRTVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNK 360

Query: 261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
            QIQA+IEAG+IGPLVNLL NAEF+IKKEAAWA+SNATSGG++EQIKFLVSQGCIKPLCD
Sbjct: 361 EQIQAVIEAGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCD 420

Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 380
           LL CPDPRIVTVCLEGLENILK GEAEKN+GN+G VN +AQ IDDAEGLEKIENLQSHDN
Sbjct: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGDVNFYAQMIDDAEGLEKIENLQSHDN 480

Query: 381 TEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 430
            EIYEKAVKILETYW+EED DE LP GD  Q GF F  N + VPSGGFNF
Sbjct: 481 NEIYEKAVKILETYWLEED-DEALPSGDGAQQGFHFGENNVQVPSGGFNF 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123916|ref|XP_002330241.1| predicted protein [Populus trichocarpa] gi|222871697|gb|EEF08828.1| predicted protein [Populus trichocarpa]

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/411 (84%), Positives = 378/411 (91%), Gaps = 1/411 (0%)

Query: 21  FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 80
           F        F  +QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL SP+DDVREQAV
Sbjct: 120 FVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLGSPSDDVREQAV 179

Query: 81  WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140
           WALGNVAGDSP+CRDLVL +GAL+PLLAQ NE+AKLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 200
            +PALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL+ELL HPSPS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLIELLLHPSPS 299

Query: 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260
           VLIPALRTVGNIVTGDDMQTQCIINHQ+LPCLL+LLT NYKKSIKKEACWTISNITAGN 
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQSLPCLLNLLTNNYKKSIKKEACWTISNITAGNK 359

Query: 261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
            QIQA+IEA +IGPLV+LL NAEF+IKKE+AWAISNATSGG++EQIK+LVSQGCIKPLCD
Sbjct: 360 EQIQAVIEANLIGPLVHLLQNAEFDIKKESAWAISNATSGGTHEQIKYLVSQGCIKPLCD 419

Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 380
           LL CPDPRIVTVCLEGLENILK GEA+KN+ +TGGVNL+AQ IDDAEGLEKIENLQSHDN
Sbjct: 420 LLICPDPRIVTVCLEGLENILKVGEADKNVSDTGGVNLYAQMIDDAEGLEKIENLQSHDN 479

Query: 381 TEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 431
           +EIYEKAVKILETYW+EED DE +PPGDA+Q+GF F G+   VPSGGFNFG
Sbjct: 480 SEIYEKAVKILETYWLEED-DETMPPGDASQSGFQFGGDAPAVPSGGFNFG 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128392|ref|XP_002320318.1| predicted protein [Populus trichocarpa] gi|222861091|gb|EEE98633.1| predicted protein [Populus trichocarpa]

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/402 (85%), Positives = 372/402 (92%), Gaps = 1/402 (0%)

Query: 30  FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89
           F  +QFEAAWALTNIASGTSENTRVVIDHGA+PIFV+LLSSP +DVREQAVWALGNVAGD
Sbjct: 136 FPQLQFEAAWALTNIASGTSENTRVVIDHGAIPIFVKLLSSPAEDVREQAVWALGNVAGD 195

Query: 90  SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 149
           SPKCRDLVL +GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF+QT+PALPALE
Sbjct: 196 SPKCRDLVLGHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFDQTKPALPALE 255

Query: 150 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
           RLIHSND+EVLTDACWALSYLSDG+N+KIQAVIEAGVCPRLVELLRH SP+VLIPALR V
Sbjct: 256 RLIHSNDNEVLTDACWALSYLSDGSNEKIQAVIEAGVCPRLVELLRHQSPTVLIPALRAV 315

Query: 210 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 269
           GNIVTGDDMQTQC+INHQALPCLL+LLT NYKKSIKKEACWTISN+TAGN NQIQA++EA
Sbjct: 316 GNIVTGDDMQTQCMINHQALPCLLNLLTNNYKKSIKKEACWTISNVTAGNANQIQAVLEA 375

Query: 270 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 329
           GIIGPLV LL NAEFEIKKEAAWAISNATSGGS+EQIKFLV QGCIKPLCDLL CPDPRI
Sbjct: 376 GIIGPLVQLLQNAEFEIKKEAAWAISNATSGGSHEQIKFLVDQGCIKPLCDLLICPDPRI 435

Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           VTVCLEGLENILK GEA+KN+GNTG  NL+ Q I+D EGLEKIENLQSHDN EIYEKAVK
Sbjct: 436 VTVCLEGLENILKVGEAKKNLGNTGNANLYTQMIEDVEGLEKIENLQSHDNNEIYEKAVK 495

Query: 390 ILETYWVEEDED-EPLPPGDATQAGFGFAGNGLPVPSGGFNF 430
           ILET+WVE+ +D E  PPGDA+Q+GF F G  +PV S GF F
Sbjct: 496 ILETFWVEDGDDFEAFPPGDASQSGFQFGGTEVPVSSNGFKF 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/411 (84%), Positives = 372/411 (90%), Gaps = 1/411 (0%)

Query: 21  FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 80
           F        F  +QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LLSSP+DDVREQAV
Sbjct: 122 FVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAV 181

Query: 81  WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140
           WALGNVAGDSP+CRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FEQ
Sbjct: 182 WALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ 241

Query: 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 200
            R ALPALERL+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPSPS
Sbjct: 242 VRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPS 301

Query: 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260
           VLIPALRTVGNIVTGDDMQTQ IINH ALPCLL LLT N+KKSIKKEACWTISNITAGN 
Sbjct: 302 VLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNR 361

Query: 261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
           +QIQA+IEAG+I PLVNLL NAEF+IKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCD
Sbjct: 362 DQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCD 421

Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 380
           LL CPDPRIVTVCLEGLENILK GEAEK++GNTG VNL+AQ ID+AEGLEKIENLQSHDN
Sbjct: 422 LLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDEAEGLEKIENLQSHDN 481

Query: 381 TEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 431
            EIYEKAVKILETYW+ ED+DE LP GD  Q GF F  N LPVPSGGFNF 
Sbjct: 482 NEIYEKAVKILETYWL-EDDDETLPAGDGAQPGFNFGNNDLPVPSGGFNFS 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/411 (84%), Positives = 372/411 (90%), Gaps = 1/411 (0%)

Query: 21  FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 80
           F        F  +QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LLSSP+DDVREQAV
Sbjct: 122 FVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAV 181

Query: 81  WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140
           WALGNVAGDSPKCRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FEQ
Sbjct: 182 WALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ 241

Query: 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 200
            R ALPALERL+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPSPS
Sbjct: 242 VRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPS 301

Query: 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260
           VLIPALRTVGNIVTGDDMQTQ IINH ALPCLL LLT N+KKSIKKEACWTISNITAGN 
Sbjct: 302 VLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNR 361

Query: 261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
           +QIQA++EAG+I PLVNLL NAEF+IKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCD
Sbjct: 362 DQIQAVVEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCD 421

Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 380
           LL CPDPRIVTVCLEGLENILK GEAEK+MGN+G VNL+AQ ID+AEGLEKIENLQSHDN
Sbjct: 422 LLVCPDPRIVTVCLEGLENILKVGEAEKSMGNSGDVNLYAQMIDEAEGLEKIENLQSHDN 481

Query: 381 TEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 431
            EIYEKAVKILETYW+ ED+DE LP GD  Q GF F  N +PVPSGGFNF 
Sbjct: 482 NEIYEKAVKILETYWL-EDDDETLPTGDGAQPGFNFGNNDVPVPSGGFNFS 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.925	0.75	0.785	7.4e-169
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.921	0.742	0.776	1.5e-163
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.925	0.740	0.735	8e-156
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.918	0.745	0.728	7.2e-155
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.921	0.737	0.73	1.8e-151
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.832	0.691	0.654	1.3e-123
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.923	0.719	0.608	2.5e-120
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.844	0.689	0.644	2.5e-120
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.902	0.705	0.610	7.7e-119
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.830	0.693	0.637	5.6e-116

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1642 (583.1 bits), Expect = 7.4e-169, P = 7.4e-169
 Identities = 315/401 (78%), Positives = 347/401 (86%)

Query:    32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
             A+QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAVWALGNVAGDSP
Sbjct:   131 AIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSP 190

Query:    92 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151
             +CRDLVL  GAL+PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q +PALPALERL
Sbjct:   191 RCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERL 250

Query:   152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
             IHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPSVLIPALRTVGN
Sbjct:   251 IHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGN 310

Query:   212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
             IVTGDD+QTQC+IN  ALPCL +LLTQN+KKSIKKEACWTISNITAGN +          
Sbjct:   311 IVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANL 370

Query:   272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 331
               PLV+LL NAEF+IKKEAAWAISNATSGGS++QIK+LV QGCIKPLCDLL CPDPRI+T
Sbjct:   371 ISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIIT 430

Query:   332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
             VCLEGLENILK GEAEKN+G+TG +N +AQ IDDAEGLEKIENLQSHDN EIYEKAVKIL
Sbjct:   431 VCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKIL 490

Query:   392 ETYWVXXXXXXXXX--XXXATQAGFGFAGNGLPVPSGGFNF 430
             ETYW+               +QAGF F GN  PVPSGGFNF
Sbjct:   491 ETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNF 531

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1592 (565.5 bits), Expect = 1.5e-163, P = 1.5e-163
 Identities = 310/399 (77%), Positives = 340/399 (85%)

Query:    33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
             +QFEAAWALTNIASGTSENT+VVI+HGAVPIFV+LL+S +DDVREQAVWALGNVAGDSP+
Sbjct:   137 LQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVREQAVWALGNVAGDSPR 196

Query:    93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
             CRDLVL  GAL+PLL+Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q RPALPALERLI
Sbjct:   197 CRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALERLI 256

Query:   153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
             HS D+EVLTDACWALSYLSDGTNDKIQ+VIEAGV PRLVELL+H SPSVLIPALR++GNI
Sbjct:   257 HSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQHQSPSVLIPALRSIGNI 316

Query:   213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXX 272
             VTGDD+QTQC+I+H AL  LL LLT N+KKSIKKEACWTISNITAGN +           
Sbjct:   317 VTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVCEAGLI 376

Query:   273 XPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 332
              PLVNLL NAEF+IKKEAAWAISNATSGGS +QIK++V QG +KPLCDLL CPDPRI+TV
Sbjct:   377 CPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVKPLCDLLVCPDPRIITV 436

Query:   333 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 392
             CLEGLENILK GEAEK  GNTG VN +AQ IDDAEGLEKIENLQSHDN+EIYEKAVKILE
Sbjct:   437 CLEGLENILKVGEAEKVTGNTGDVNFYAQLIDDAEGLEKIENLQSHDNSEIYEKAVKILE 496

Query:   393 TYWVXXXXXXXXXXXXATQAGFGFAG-NGLPVPSGGFNF 430
             TYW+            + Q GF F G N   VP GGFNF
Sbjct:   497 TYWLEEEDETLPPGDPSAQ-GFQFGGGNDAAVPPGGFNF 534

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1519 (539.8 bits), Expect = 8.0e-156, P = 8.0e-156
 Identities = 297/404 (73%), Positives = 334/404 (82%)

Query:    33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
             +QFEAAWALTNIASGTSENTRV+ID GAVP+FV+LLSS +++VREQAVWALGNVAGDSPK
Sbjct:   136 LQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAGDSPK 195

Query:    93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPALERL 151
             CRD VLS  A+M LLAQF+EH+KLSMLRNATWTLSNFCRGKPQP FEQ T+ ALPALERL
Sbjct:   196 CRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKAALPALERL 255

Query:   152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
             +HS D+EVLTDA WALSYLSDGTN+KIQ VI+AGV PRLV+LL HPSPSVLIPALRT+GN
Sbjct:   256 LHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLIPALRTIGN 315

Query:   212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
             IVTGDD+QTQ +I+ QALP LL+LL   YKKSIKKEACWTISNITAGN +          
Sbjct:   316 IVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQIQEVFQAGI 375

Query:   272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 331
               PL+NLL   EFEIKKEA WAISNATSGG+++QIKFLVSQGCI+PLCDLL CPDPR+VT
Sbjct:   376 IRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDPRVVT 435

Query:   332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
             V LEGLENILK GEAEKN+GNTG  NL+AQ I+DA+GL+KIENLQSHDN EIYEKAVKIL
Sbjct:   436 VTLEGLENILKVGEAEKNLGNTGNDNLYAQMIEDADGLDKIENLQSHDNNEIYEKAVKIL 495

Query:   392 ETYWVXXXXXXXXXXXXATQ----AGFGFAGNGLPVPSGGFNFG 431
             E+YW             A +    +GF F       P+GGFNFG
Sbjct:   496 ESYWAADDEEEDIGGVDAPENVQSSGFQFGNQSGNAPTGGFNFG 539

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
 Identities = 290/398 (72%), Positives = 330/398 (82%)

Query:    33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
             +QFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQAVWALGNVAGDSPK
Sbjct:   135 LQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPK 194

Query:    93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
             CRDLVLS GA+ PLL+QFNE+ KLSMLRNATWTLSNFCRGKP P FEQT+PALP LERL+
Sbjct:   195 CRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLV 254

Query:   153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
              S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL H SPSVLIPALRT+GNI
Sbjct:   255 QSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNI 314

Query:   213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXX 272
             VTGDD+QTQ +++ QALPCLL+LL  NYKKSIKKEACWTISNITAGN +           
Sbjct:   315 VTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGII 374

Query:   273 XPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 332
               LV +L +AEFE+KKEAAW ISNATSGG+++QIKF+VSQGCIKPLCDLL CPD ++VTV
Sbjct:   375 QSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTV 434

Query:   333 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 392
             CLE LENIL  GEAEKN+G+TG  NL+AQ ID+AEGLEKIENLQSHDN +IY+KAVKILE
Sbjct:   435 CLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILE 494

Query:   393 TYWVXXXXXXXXXXXXATQAGFGFAGNGLPVPSGGFNF 430
             T+W             A Q+GF F      VP G FNF
Sbjct:   495 TFWTEDNEEEGNDENHAPQSGFQFGSTN--VPPGQFNF 530

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1478 (525.3 bits), Expect = 1.8e-151, P = 1.8e-151
 Identities = 292/400 (73%), Positives = 326/400 (81%)

Query:    33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
             +QFEAAWALTN+ASGTS++TRVVI+ GAVPIFV+LL+S +DDVREQAVWALGNVAGDSP 
Sbjct:   139 LQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVWALGNVAGDSPN 198

Query:    93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
             CR+LVL+ GAL PLLAQ NE++KLSMLRNATWTLSNFCRGKP   FEQ +PALP L +LI
Sbjct:   199 CRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILRQLI 258

Query:   153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
             + ND+EVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL H SP+VLIPALRTVGNI
Sbjct:   259 YLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLGHQSPTVLIPALRTVGNI 318

Query:   213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXX 272
             VTGDD QTQ II    LP L +LLTQN+KKSIKKEACWTISNITAGN             
Sbjct:   319 VTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISNITAGNKLQIEAVVGAGII 378

Query:   273 XPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 332
              PLV+LL NAEF+IKKEAAWAISNATSGGS+EQI++LV+QGCIKPLCDLL CPDPRIVTV
Sbjct:   379 LPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLICPDPRIVTV 438

Query:   333 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 392
             CLEGLENILK GEA+K MG   GVNL+AQ I++++GL+K+ENLQSHDN EIYEKAVKILE
Sbjct:   439 CLEGLENILKVGEADKEMGLNSGVNLYAQIIEESDGLDKVENLQSHDNNEIYEKAVKILE 498

Query:   393 TYWVXXXXXXXXXXXXA--TQAGFGFAGNGLPVPSGGFNF 430
              YW                +Q  F F GN    P GGF F
Sbjct:   499 RYWAEEEEEQILQDGGNDNSQQAFNF-GNNPAAPVGGFKF 537

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
 Identities = 237/362 (65%), Positives = 283/362 (78%)

Query:    33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
             +QFEAAWALTNIASG SE+T+VVIDHG VP+FV+LL+SP DDVREQA+W LGNVAGDS +
Sbjct:   130 LQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQAIWGLGNVAGDSIQ 189

Query:    93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
             CRD VL++GA +PLL Q N HA LS+LRNATWTLSNF RGKP P F+  +  LP L+RL+
Sbjct:   190 CRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFDLVKHVLPVLKRLV 249

Query:   153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
             +S+D++VL DACWALS LSD +N+ IQ+VIEAGV PRLVELL+H SP VL+PALR +GNI
Sbjct:   250 YSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASPVVLVPALRCIGNI 309

Query:   213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXX 272
             V+G+  QT C+IN   LP L DLLTQN+ + I++EACWTISNITAG              
Sbjct:   310 VSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGLEEQIQSVIDANLI 369

Query:   273 XPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 332
               LVNL  +AEF+IKKEA WAISNA+ GGS  QIK+LV Q CIK LCD+L CPD RI+ V
Sbjct:   370 PSLVNLAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKALCDILVCPDLRIILV 429

Query:   333 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 392
              L GLE IL AGE +KN+ +   VN ++Q I+DAEGLEKIENLQ H N EIYEKAVKIL+
Sbjct:   430 SLGGLEMILIAGEVDKNLRD---VNCYSQMIEDAEGLEKIENLQHHGNNEIYEKAVKILQ 486

Query:   393 TY 394
             TY
Sbjct:   487 TY 488

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
 Identities = 246/404 (60%), Positives = 289/404 (71%)

Query:    33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
             VQFEAAWALTNIASG+++ T+VVI+ GAVPIFV LLSSP  DVREQAVWALGN+AGDSP+
Sbjct:   141 VQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNIAGDSPQ 200

Query:    93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
             CRD VL+ GAL PLL   N+  K+SMLRNATWTLSNFCRGK PQP +    PALP L +L
Sbjct:   201 CRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPALPVLAKL 260

Query:   152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
             I+  DDEVL DACWA+SYLSDG N+KIQAVIEAG+  RLVELL H S SV  PALR+VGN
Sbjct:   261 IYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGN 320

Query:   212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
             IVTGDD+QTQ IIN  ALP LL LL+   K  I+KEACWTISNITAGN +          
Sbjct:   321 IVTGDDVQTQVIINCGALPALLSLLSST-KDGIRKEACWTISNITAGNSSQIQSVIDAGI 379

Query:   272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
               PLV+LL N +F+ +KEA WAISNATSGG    +QI++LV+QGCIKPLCDLL CPD +I
Sbjct:   380 IPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLACPDNKI 439

Query:   330 VTVCLEGLENILKAGEAEKNMGNTGG-VNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 388
             + V L+GLENILK GE +K  G     VN +A  I++A G+EKI + Q++ N EIY KA 
Sbjct:   440 IQVALDGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEEIYMKAY 499

Query:   389 KILETYWVXXXXXXXXXXXXATQ-AGFGFAGNGLPVPSGGFNFG 431
              I+E Y+             A Q    GF         GGF+FG
Sbjct:   500 NIIEKYFSDEDEAAGDIDELAPQQTQTGFTLGATQQQPGGFSFG 543

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
 Identities = 239/371 (64%), Positives = 278/371 (74%)

Query:    33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
             +QFEAAWALTNIASGTSENT VVIDHGAV I VRLL+SP D VREQ VWALGN++GDSP+
Sbjct:   120 LQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSPR 179

Query:    93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
             CRD+VL + AL  LL Q N  AKLSML NA WTLSN CRGKPQP F+Q   ALPAL +LI
Sbjct:   180 CRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQLI 239

Query:   153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
               +D E+L   CWAL YLSDG+N+KIQAVIEA VC RL+ L  H SPSV+ PALRT+GNI
Sbjct:   240 RLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGNI 299

Query:   213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXX 272
             VTG+D QTQ II+ QALPCL++LL  +Y K+I+KEACWT+SNITAG  +           
Sbjct:   300 VTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADIC 359

Query:   273 XPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 332
               LVNLL N+E ++KKEAAWAI NA +GGS +QI FLV Q CIKPLCDLL C D ++V V
Sbjct:   360 PALVNLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMV 419

Query:   333 CLEGLENILKAGEAEKNMGNTG-------GVNLFAQAIDDAEGLEKIENLQSHDNTEIYE 385
             CLE L+ ILK GE   +    G        VN  AQ I++AEGLEKIE LQSH+N +IYE
Sbjct:   420 CLEALKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIYE 479

Query:   386 KAVKILETYWV 396
              AVKILETYW+
Sbjct:   480 TAVKILETYWM 490

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
 Identities = 245/401 (61%), Positives = 286/401 (71%)

Query:    33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
             VQFEAAWALTNIASG++  T+VVI+ GAVPIFV LL SP  DVREQAVWALGN+AGDSP+
Sbjct:   140 VQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQ 199

Query:    93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
             CRD VLS GAL PLL    +  KLSMLRNATWTLSNFCRGK PQP +    PALP L +L
Sbjct:   200 CRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKL 259

Query:   152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
             ++S DDEVL DACWA+SYLSDG+NDKIQAVIEAG+  RLVELL H S SV  PALR+VGN
Sbjct:   260 VYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGN 319

Query:   212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
             IVTGDD+QTQ IIN  ALPCLL LL  N K  I+KEACWTISNITAGN            
Sbjct:   320 IVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAGNSAQIQSVVDANI 378

Query:   272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
               PL++LL N + + +KEA WAISNATSGG    +QI++LV+QGCIKPLCDLL+CPD +I
Sbjct:   379 IPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSCPDNKI 438

Query:   330 VTVCLEGLENILKAGEAEKNMGNTG--GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
             + V L+GLENILK G+ +K     G   +N +A  I++  G+EKI   Q++ N EIY KA
Sbjct:   439 IQVALDGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEEIYMKA 498

Query:   388 VKILETYWVXXXXXXXXXXXXATQAG-FGFAGNGLPVPSGG 427
               I+E Y+                 G FGF GN    PSGG
Sbjct:   499 FNIIEKYFSDDDENADDAAPAQGPNGTFGF-GN----PSGG 534

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
 Identities = 232/364 (63%), Positives = 281/364 (77%)

Query:    33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
             +QFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+AGDS  
Sbjct:   127 LQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSHY 186

Query:    93 CRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 150
             CRDLVLS+ AL PLL+     A  K+SM+RNATWTLSNFCRGKPQP FE  R +LP L +
Sbjct:   187 CRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLAK 246

Query:   151 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 210
             LI+  D+EVL DACWALSYLSDG+N++IQ VI+A VC ++VELL HP+ +V  PALRT+G
Sbjct:   247 LIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPALRTIG 306

Query:   211 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXX 270
             NIVTGDD QTQ +++ QAL  LL+LL Q+ K++I+KEACWTISNITAG+ N         
Sbjct:   307 NIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQVIDAN 365

Query:   271 XXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 330
                 LV LL NAEFEI+KEAAWAISNATS G+ +QI FLVSQGC+KPLCDLL   DPRI+
Sbjct:   366 IIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRII 425

Query:   331 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 390
              V LEG+ENIL AG+ E  +    GVN + + I+DA+GL KI +LQ H N + +EK  +I
Sbjct:   426 NVALEGIENILVAGKKEAQVT---GVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRI 482

Query:   391 LETY 394
             + TY
Sbjct:   483 ISTY 486

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.6055	0.9025	0.7257	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.6055	0.9025	0.7257	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5790	0.8886	0.7066	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.7909	0.9721	0.7875	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5550	0.9443	0.7551	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.6358	0.8816	0.7364	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.8233	0.9234	0.7552	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.6055	0.9025	0.7257	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.6055	0.9025	0.7257	yes	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.8109	0.9280	0.7490	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	431
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-178
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-32
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-27
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-23
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-21
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-18
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	2e-10
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-09
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	2e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	7e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-05
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	8e-05
pfam04826	254	pfam04826, Arm_2, Armadillo-like	9e-05
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	2e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	2e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	4e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	8e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	8e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.003
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.004
COG5369	743	COG5369, COG5369, Uncharacterized conserved protei	0.004

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  507 bits (1306), Expect = e-178
 Identities = 230/400 (57%), Positives = 285/400 (71%), Gaps = 9/400 (2%)

Query: 34  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 93
           QFEAAWALTNIASGT++ T+VV+D GAVP+F++LLSS  DDVREQAVWALGN+AGDS  C
Sbjct: 132 QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC 191

Query: 94  RDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
           RD VL  GAL PLL      A  +SMLRNATWTLSN CRGK P P +     ALP L +L
Sbjct: 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKL 251

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           I+S D EVL DACWA+SYLSDG N+KIQAV++ G+  RLVELL H S  +  PALR+VGN
Sbjct: 252 IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN 311

Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 271
           IVTG D QTQ IIN  AL     LL+ + K++I+KEACWTISNITAGN  QIQA+I+A +
Sbjct: 312 IVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQAVIDANL 370

Query: 272 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
           I PL++LL +AE++IKKEA WAISNATSGG N  + I++LVSQG IKPLCDLL+  D +I
Sbjct: 371 IPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI 430

Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           + V L+ +ENILK GE ++       +N++A  ++ A G++ I  LQ   N  IY+KA  
Sbjct: 431 IEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYS 489

Query: 390 ILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFN 429
           I+E ++ EED  + L P  A    F F G+      G FN
Sbjct: 490 IIEKFFGEEDAVDELAPETAGNT-FTF-GSN-VNQQGNFN 526

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  117 bits (296), Expect = 4e-32
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 144 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
            LPAL  L+ S+D+ V  +A WALS LS G ND IQAV+EAG  P LV+LL+     V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 204 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 257
            AL  + N+  G +     ++    +P L++LL  +  + I+K A   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  105 bits (264), Expect = 1e-27
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
            VQ EAAWAL+N+++G ++N + V++ G +P  V+LL S  ++V + A+WAL N+A    
Sbjct: 22  NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 131
             + +VL  G + P L    + +   + +NAT  LSN   
Sbjct: 82  DNKLIVLEAGGV-PKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 93.5 bits (233), Expect = 4e-23
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 264 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323
           +A+I+AG +  LV+LL +++  +++EAAWA+SN ++G +N+ I+ +V  G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59

Query: 324 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 383
             D  +V   L  L N+              G       + +A G+ K+ NL    N +I
Sbjct: 60  SEDEEVVKAALWALRNL------------AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDI 107

Query: 384 YEKAVKILETYW 395
            + A   L    
Sbjct: 108 QKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA 282
           +I    LP L+ LL+ +  +++++EA W +SN++AGN + IQA++EAG +  LV LL + 
Sbjct: 3   VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 340
           + E+ K A WA+ N  +G  +     ++  G +  L +LL+  +  I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPED-NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 88.9 bits (221), Expect = 2e-21
 Identities = 44/161 (27%), Positives = 65/161 (40%), Gaps = 42/161 (26%)

Query: 54  VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH 113
            VI  G +P  V LLSS  ++V+ +A WAL N++  +      V+  G            
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAG------------ 49

Query: 114 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 173
                                          LPAL +L+ S D+EV+  A WAL  L+ G
Sbjct: 50  ------------------------------GLPALVQLLKSEDEEVVKAALWALRNLAAG 79

Query: 174 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 214
             D    V+EAG  P+LV LL   +  +   A   + N+ +
Sbjct: 80  PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 87.6 bits (217), Expect = 1e-18
 Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 46/257 (17%)

Query: 136 PLFEQTRPALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELL 194
           P+ +Q    LP L + + S+D E    A +     LS  T+  IQ VI+AGV PR VE +
Sbjct: 64  PMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFM 123

Query: 195 RHPSPSVL-IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 253
                 +L   A   + NI +G   QT+ +++  A+P  + LL+   +  ++++A W + 
Sbjct: 124 DEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALG 182

Query: 254 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK--KEAAWAISNATSG----------- 300
           NI   +      +++ G + PL+ LLL++   I   + A W +SN   G           
Sbjct: 183 NIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS 242

Query: 301 ------------------------------GSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 330
                                         G NE+I+ ++  G    L +LL+    +I 
Sbjct: 243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQ 302

Query: 331 TVCLEGLENILKAGEAE 347
           T  L  + NI+   + +
Sbjct: 303 TPALRSVGNIVTGSDDQ 319

Length = 526

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 40/151 (26%), Positives = 82/151 (54%), Gaps = 8/151 (5%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP 91
           +Q  A  ++ NI +G+ + T+V+I+ GA+  F  LLSSP +++R++A W + N+ AG++ 
Sbjct: 301 IQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTE 360

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF---CRGKPQPL-FEQTRPALPA 147
           + + ++ +N  L+P L      A+  + + A W +SN       +P  + +  ++  +  
Sbjct: 361 QIQAVIDAN--LIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKP 418

Query: 148 LERLIHSNDDEVLTDACWALSY-LSDGTNDK 177
           L  L+   D++++  A  A+   L  G  D+
Sbjct: 419 LCDLLDVVDNKIIEVALDAIENILKVGEQDR 449

Length = 526

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 54.0 bits (131), Expect = 5e-10
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 48 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 87
            EN + V+D G +P  V LL S  ++V ++A WAL N++
Sbjct: 1  DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.0 bits (131), Expect = 5e-10
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 48 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 87
          + EN + VI+ GAVP  V+LLSSP ++V+E+A WAL N+A
Sbjct: 1  SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 259 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299
           +    QA+IEAG + PLV LL + + E+++EAAWA+SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 86
          V+  AA AL  +A G  E  R  +    +P  + LL    D+VRE A WALG +
Sbjct: 3  VREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 49.0 bits (118), Expect = 3e-08
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 174 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 214
           + +  QAVIEAG  P LV+LL  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.8 bits (115), Expect = 7e-08
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 174 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 213
            ++  QAV++AG  P LVELL+     V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.5 bits (109), Expect = 6e-07
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 262 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 299
             QA+++AG +  LV LL + + E+ KEAAWA+SN +S
Sbjct: 4   NKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 44.3 bits (106), Expect = 1e-06
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 302 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 340
            +E  + +V  G +  L +LL   D  +V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 216 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 257
                Q +I   A+P L+ LL+    + +++EA W +SN+ A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 216 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 257
           DD   Q +++   LP L++LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 302 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 340
           S E  + ++  G + PL  LL+ PD  +       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 144 ALPALERLIHSNDDEVLTDACWALSYLSD 172
           A+P L +L+ S D+EV  +A WALS L+ 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 144 ALPALERLIHSNDDEVLTDACWALSYLSD 172
            LPAL  L+ S D+EV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 64/309 (20%), Positives = 108/309 (34%), Gaps = 50/309 (16%)

Query: 55  VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLV--LSNGALMPLLAQFN 111
           ++    VP    LLS     V   AV  L  +   D      L+  L    L  LL   N
Sbjct: 147 LVRDFLVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVR-RLCNLLTVCN 205

Query: 112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 171
              ++ +LR     L+ +    P+      +  L  +  L+ ++++ VL +A   + +L 
Sbjct: 206 PWLQVKILR----LLTRYAPQDPRE----PKELLEDILNLLQNSNNAVLYEAVKTIIHL- 256

Query: 172 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-------DMQTQCII 224
           D   + I   + A     L  LL  P  ++   ALR +  I+          D+   C+ 
Sbjct: 257 DPEPELIVLAVNA-----LGRLLSSPDENLRYVALRNLNKILEKHPPAVQHLDLIIFCLK 311

Query: 225 NHQ-------ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ--IQAIIEAGI---- 271
                     AL  L  L+ ++  K I KE    +S I         ++AI         
Sbjct: 312 TDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEFKIKLVKAIGRLAEKFPT 371

Query: 272 -----IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-NCP 325
                I  L+ LL  A   +  E    I +        + ++++       LC+LL +  
Sbjct: 372 DAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYPELR-EYILEH-----LCELLEDIE 425

Query: 326 DPRIVTVCL 334
            P      L
Sbjct: 426 SPEARAAAL 434

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

>gnl|CDD|218281 pfam04826, Arm_2, Armadillo-like

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 281
            ++    L  LL LL       I + A  T+ N  A + NQ   I + G I  + NLL N
Sbjct: 7   DVLEPHDLQKLLALLESTEDPFIHEIALITLGNSAAYSFNQ-DIIRDLGGIPIIANLLSN 65

Query: 282 AEFEIKKEAAWAISNATSGGSN-EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 337
              EIK++A  A++N +    N ++IK  V+Q C   +   LN        V L GL
Sbjct: 66  PNPEIKEKALNALNNLSVNVENQKKIKVYVNQVCEDIVSSPLNSA------VQLAGL 116

This domain contains armadillo-like repeats. Proteins containing this domain interact with numerous other proteins, through these interactions they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation of circadian rhythm and lysosomal sorting of G protein-coupled receptors. Length = 254

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 61/299 (20%), Positives = 89/299 (29%), Gaps = 63/299 (21%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
            V+  AA AL  + S             AVP+   LLS     VR+ A  ALG + GD  
Sbjct: 58  LVRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVRDAAADALGEL-GDPE 105

Query: 92  KCRDLV--LSN--------------------GALMPLLAQFNEHAKLSMLRNATWTLSNF 129
               LV  L N                     AL PLL    +    S        L + 
Sbjct: 106 AVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDV 165

Query: 130 CRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 188
                + L E     A+P L  L+   D +V      A S L    ++ ++A        
Sbjct: 166 RAAAAEALGELGDPEAIPLLIELLEDEDADVR---RAAASALGQLGSENVEAA------D 216

Query: 189 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC-------------------IINHQAL 229
            LV+ L   S  V   AL  +G I   + +                        ++    
Sbjct: 217 LLVKALSDESLEVRKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALGALDLAEA 276

Query: 230 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 288
              L LL  +   +++ EA   +  I          +        +    L     I K
Sbjct: 277 ALPLLLLLIDEANAVRLEAALALGQIGQEKAVAALLLALEDGDADVRKAALILLEGIDK 335

Length = 335

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 22/108 (20%)

Query: 146 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 205
             LE L+   D EV   A  AL  L D               P L+ELL+ P P V   A
Sbjct: 3   ALLEALLSDPDPEVRAAAARALGELGD-----------PEALPALLELLKDPDPEVRRAA 51

Query: 206 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 253
              +G +  GD          +ALP LL+LL  +    ++  A   ++
Sbjct: 52  AEALGKL--GDP---------EALPALLELLQDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 75  VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 129
           VRE A  ALG +AG  P    L  +   L+P L    +     +   A W L   
Sbjct: 3   VREAAALALGALAGGGP--ELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 90  SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 131
           SP+ +  V+  GA+ P L Q        +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAV-PPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 18/51 (35%), Positives = 22/51 (43%)

Query: 120 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 170
             A   L     G P+ L       LPAL  L+  +DDEV   A WAL  +
Sbjct: 5   EAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 90
           V+  AA AL  +            D  A+P  + LL  P  +VR  A  ALG +    
Sbjct: 15 EVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRRAAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 199 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 255
             V   A   +G +  G   +       + LP LL LL  +    +++ A W +  I
Sbjct: 1   WEVREAAALALGALA-GGGPELLRPAVPELLPALLPLLKDD-DDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 61 VPIFVRLLSSPTDDVREQAVWALGNVA 87
          +P+ + LL+ P  +VRE A  ALG +A
Sbjct: 2  LPLLLELLNDPDPEVREAAAEALGALA 28

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

>gnl|CDD|227663 COG5369, COG5369, Uncharacterized conserved protein [Function unknown]

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 26/198 (13%)

Query: 232 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 291
           L+D L+ N +  I+      I N      N     +E  II  LVNL+++ +  ++  + 
Sbjct: 436 LIDALS-NPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSE 494

Query: 292 WAISNATSG-GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL-------KA 343
           W + +       NE+ KFL   G  K +    N P  ++    L+ L N         K+
Sbjct: 495 WVLRHLMYNCQKNEKFKFLAKIGVEK-VLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKS 553

Query: 344 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS--------------HDNTEIYEKAVK 389
            +       T    LF + ID  E    +E L+                   +  E  + 
Sbjct: 554 KDVFIKA--TPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLD 611

Query: 390 ILETYWVEEDEDEPLPPG 407
            +     E     PL PG
Sbjct: 612 SIFEILDEFAGRTPLSPG 629

Length = 743

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	431
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.94
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.89
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.87
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.79
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.78
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.76
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.74
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.71
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.7
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.7
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.7
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.69
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.67
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.66
PRK09687	280	putative lyase; Provisional	99.66
PRK09687	280	putative lyase; Provisional	99.65
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.64
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.64
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.61
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.6
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.57
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.54
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.53
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.53
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.52
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.5
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.48
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.45
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.44
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.41
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.38
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.37
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.36
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.34
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.29
PTZ00429	746	beta-adaptin; Provisional	99.29
PTZ00429	746	beta-adaptin; Provisional	99.27
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.26
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.23
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.23
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.23
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.21
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.14
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.1
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.07
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.07
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.0
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.95
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.89
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.86
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.85
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.85
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.84
COG5369	743	Uncharacterized conserved protein [Function unknow	98.82
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.78
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.78
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.77
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.77
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.76
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.75
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.75
COG5369	743	Uncharacterized conserved protein [Function unknow	98.73
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.72
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.71
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.67
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.65
TIGR02270	410	conserved hypothetical protein. Members are found	98.62
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.6
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.6
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.58
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.56
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.54
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.53
TIGR02270	410	conserved hypothetical protein. Members are found	98.5
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.49
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.48
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.45
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.43
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.42
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.42
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.41
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.4
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.38
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.36
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.34
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.34
PF05536	543	Neurochondrin: Neurochondrin	98.33
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.32
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.32
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.31
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.31
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.28
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.27
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.25
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.21
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.2
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.18
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.17
PF05536	543	Neurochondrin: Neurochondrin	98.17
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.15
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.13
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.12
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.12
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.12
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.11
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.1
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.07
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.05
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.04
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.03
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.03
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.02
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.0
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.99
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.96
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.96
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.95
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.94
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.93
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.89
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.84
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.79
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.78
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.75
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.74
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.73
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.7
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.7
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.64
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.62
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.61
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.6
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.59
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.58
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.57
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.51
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.5
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.49
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.46
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.46
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.44
KOG0567	289	consensus HEAT repeat-containing protein [General	97.41
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.4
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.4
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.39
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.38
KOG0567	289	consensus HEAT repeat-containing protein [General	97.38
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.37
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.36
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.35
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.34
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.33
PF05004	309	IFRD: Interferon-related developmental regulator (	97.26
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.25
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.25
KOG2025	892	consensus Chromosome condensation complex Condensi	97.24
KOG2956	516	consensus CLIP-associating protein [General functi	97.22
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.22
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.18
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.11
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.1
KOG3036	293	consensus Protein involved in cell differentiation	97.08
PF05004	309	IFRD: Interferon-related developmental regulator (	97.08
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.05
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.96
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.94
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.94
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.93
KOG2025	892	consensus Chromosome condensation complex Condensi	96.92
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.88
KOG3036	293	consensus Protein involved in cell differentiation	96.88
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	96.83
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.77
KOG1243	690	consensus Protein kinase [General function predict	96.77
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.71
PRK14707	2710	hypothetical protein; Provisional	96.68
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.62
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.57
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.55
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.52
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.5
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.48
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.42
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.41
KOG2956	516	consensus CLIP-associating protein [General functi	96.39
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.29
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.28
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	96.27
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.26
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.24
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.21
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.15
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	96.12
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.09
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.07
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	96.04
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.02
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.02
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	96.0
KOG1243	690	consensus Protein kinase [General function predict	95.83
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.72
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.69
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.67
KOG2137	700	consensus Protein kinase [Signal transduction mech	95.67
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.67
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	95.63
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.62
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.49
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.47
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	95.45
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.38
KOG2137	700	consensus Protein kinase [Signal transduction mech	95.33
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.28
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.26
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.2
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.19
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.11
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.08
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	94.95
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.72
PRK14707	2710	hypothetical protein; Provisional	94.71
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.55
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.5
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.45
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.45
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.44
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.38
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	94.35
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	94.34
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.24
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.2
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.19
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.18
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	94.1
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.04
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.96
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	93.92
KOG2933	334	consensus Uncharacterized conserved protein [Funct	93.78
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.65
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.43
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.39
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	93.31
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	93.18
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.15
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	92.97
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.93
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	92.92
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	92.75
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.28
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.09
cd03561	133	VHS VHS domain family; The VHS domain is present i	92.08
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.01
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	91.8
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	91.74
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	91.49
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.32
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	90.98
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	90.98
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	90.79
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	90.76
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	90.76
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	90.71
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	90.71
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	90.67
KOG0413	1529	consensus Uncharacterized conserved protein relate	90.38
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	90.38
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	90.26
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	90.25
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	90.17
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	89.73
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	89.62
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	88.86
cd03561	133	VHS VHS domain family; The VHS domain is present i	88.82
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	88.75
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	88.67
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	88.65
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	88.35
KOG2229	616	consensus Protein required for actin cytoskeleton	88.26
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	88.2
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	88.14
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	87.84
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	87.73
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	87.63
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	87.13
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	86.84
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	86.67
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	86.49
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	86.39
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	86.03
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	86.0
KOG0413	1529	consensus Uncharacterized conserved protein relate	85.65
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	85.58
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	85.35
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	84.8
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	84.51
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	84.5
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	83.51
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	83.38
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	82.83
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	82.55
PF12463	303	DUF3689: Protein of unknown function (DUF3689) ; I	82.26
PF04499	475	SAPS: SIT4 phosphatase-associated protein; InterPr	82.16
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	82.04
KOG2199	462	consensus Signal transducing adaptor protein STAM/	81.57
KOG2199	462	consensus Signal transducing adaptor protein STAM/	81.53
PF11229	589	DUF3028: Protein of unknown function (DUF3028); In	81.45
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	80.63
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	80.44
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	80.34
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	80.28

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-61  Score=440.44  Aligned_cols=410  Identities=65%  Similarity=1.027  Sum_probs=382.2

Q ss_pred             chhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 014088            5 DLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG   84 (431)
Q Consensus         5 ~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~   84 (431)
                      +..++.|++|.+|.     +|...+++.+|..|+|+|.|+++++.+..+.+++.|++|.+++++.+++..++++|+|+|+
T Consensus       103 ~~vi~~G~v~~lV~-----~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALg  177 (514)
T KOG0166|consen  103 DEVIQSGVVPRLVE-----FLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALG  177 (514)
T ss_pred             HHHHHcCcHHHHHH-----HHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHh
Confidence            34567799999999     7777888999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHH
Q 014088           85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDA  163 (431)
Q Consensus        85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  163 (431)
                      |++.+++.+|+.+...|++.+|+.++..+....+.+++.|+|+|||++. |.+.......++|.|..++.+.|+++...+
T Consensus       178 NIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da  257 (514)
T KOG0166|consen  178 NIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA  257 (514)
T ss_pred             ccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            9999999999999999999999999965555689999999999999998 888888999999999999999999999999


Q ss_pred             HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhh
Q 014088          164 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  243 (431)
Q Consensus       164 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  243 (431)
                      +|++++++.+.++.++.+++.|+++.|+.+|.+.++.++..|+++++|++.+++.+.+.+++.++++.|..++...+.+.
T Consensus       258 ~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~  337 (514)
T KOG0166|consen  258 CWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKES  337 (514)
T ss_pred             HHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999654778


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 014088          244 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  323 (431)
Q Consensus       244 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  323 (431)
                      +|++|||+++|++.++++.++.+++.|++|.|+.+++.++.++|++|+|+++|++..+++++..++++.|++++++++|.
T Consensus       338 ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~  417 (514)
T KOG0166|consen  338 IKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT  417 (514)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 014088          324 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP  403 (431)
Q Consensus       324 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~~  403 (431)
                      -.|.++...++.+|.++++.++.......    +++..+++++||+++|+.|++|+|.+++++|..++++||++|+++++
T Consensus       418 ~~D~~ii~v~Ld~l~nil~~~e~~~~~~~----n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~~~~  493 (514)
T KOG0166|consen  418 CPDVKIILVALDGLENILKVGEAEKNRGT----NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDDEDD  493 (514)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHhccccc----cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCccccc
Confidence            99999999999999999999998764321    78999999999999999999999999999999999999999865554


Q ss_pred             C-CCCCCCCCCcccCCCCCCCCCCCCcC
Q 014088          404 L-PPGDATQAGFGFAGNGLPVPSGGFNF  430 (431)
Q Consensus       404 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
                      . |..+    .|+|..+   .|.|||||
T Consensus       494 ~~~~~~----~~~~~~~---~~~~~f~f  514 (514)
T KOG0166|consen  494 QQPTTS----QFTFQVQ---APDGGFNF  514 (514)
T ss_pred             cccccc----ccccCCC---CCCCCCCC
Confidence            3 3332    6666554   89999998

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.3e-57  Score=385.75  Aligned_cols=416  Identities=55%  Similarity=0.874  Sum_probs=380.5

Q ss_pred             cchhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 014088            4 FDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL   83 (431)
Q Consensus         4 ~~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L   83 (431)
                      ++..++.|++|+||+     +|.++...-++..|+|+|.|++++.....+.+++.|++|.++++|.+++.+++++++|+|
T Consensus       107 Iq~VIdaGvVpRfve-----fm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWAL  181 (526)
T COG5064         107 IQPVIDAGVVPRFVE-----FMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWAL  181 (526)
T ss_pred             chhHHhccccHHHHH-----HHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHh
Confidence            355688999999999     665777778999999999999999888888999999999999999999999999999999


Q ss_pred             HHhcCCChHHHHHHHHcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHH
Q 014088           84 GNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLT  161 (431)
Q Consensus        84 ~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~  161 (431)
                      +|++.+++.+|+.+.+.|++++++.++.++. +..+.+++.|.|+|||++. |.+........+|.|.+++.+.|+++..
T Consensus       182 GNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlv  261 (526)
T COG5064         182 GNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLV  261 (526)
T ss_pred             ccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHH
Confidence            9999999999999999999999999996443 4689999999999999998 7778888899999999999999999999


Q ss_pred             HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccch
Q 014088          162 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK  241 (431)
Q Consensus       162 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  241 (431)
                      .|+|++++++..+.++++.+++.|....|+.+|.+++..++..+++.++|++.+++.+.+.+++.|+++.+..+|+++ .
T Consensus       262 DA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-k  340 (526)
T COG5064         262 DACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-K  340 (526)
T ss_pred             HHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-h
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHH
Q 014088          242 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLC  319 (431)
Q Consensus       242 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~  319 (431)
                      ..+|++|||+++|++.++.+.++++++.+++|+|+.+|...+..++++|||+++|..+++  .|+..+++++.|++++|.
T Consensus       341 e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc  420 (526)
T COG5064         341 ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC  420 (526)
T ss_pred             hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHH
Confidence            899999999999999999999999999999999999999999999999999999999876  578999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 014088          320 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED  399 (431)
Q Consensus       320 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~  399 (431)
                      ++|...+..+.+.++.++.++++.++..+.. +....|.|...+.+.|+++.|..++++.|.+++.+|-.+++.||.+||
T Consensus       421 ~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~-~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD  499 (526)
T COG5064         421 DLLDVVDNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEED  499 (526)
T ss_pred             HHHhccCccchhhhHHHHHHHHhhhhHHHHh-ccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccch
Confidence            9999888889999999999999988887643 345668899999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCcccCCCCCCCCCCCCc
Q 014088          400 EDEPLPPGDATQAGFGFAGNGLPVPSGGFN  429 (431)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (431)
                      .-|++.|.- .-..|+|..+  +-|.|.||
T Consensus       500 ~vd~lapet-~g~tftfg~~--~~~qg~f~  526 (526)
T COG5064         500 AVDELAPET-AGNTFTFGSN--VNQQGNFN  526 (526)
T ss_pred             hhhhcCccc-cCCeeecCCC--ccccCCCC
Confidence            877765443 3455777544  34556554

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-38  Score=290.71  Aligned_cols=331  Identities=26%  Similarity=0.421  Sum_probs=295.0

Q ss_pred             hhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHH
Q 014088            6 LRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALG   84 (431)
Q Consensus         6 ~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~   84 (431)
                      ..++.|.+|.|+.      |..+++.+++++|+|+|+|++.+++..|+.+++.|+++.|+.++..... .+.+.+.|+|+
T Consensus       147 ~vv~agavp~fi~------Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~Ls  220 (514)
T KOG0166|consen  147 VVVDAGAVPIFIQ------LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLS  220 (514)
T ss_pred             ccccCCchHHHHH------HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHH
Confidence            3467899999999      7778889999999999999999999999999999999999999988664 88899999999


Q ss_pred             HhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHH
Q 014088           85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDA  163 (431)
Q Consensus        85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  163 (431)
                      |+|++....-..-.-..+++.|..++ ++.|+++...|+|++++|+.+. +..++....|++|.|+++|.+.+..++..|
T Consensus       221 Nlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~Pa  299 (514)
T KOG0166|consen  221 NLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPA  299 (514)
T ss_pred             HHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHH
Confidence            99976521112222334788999999 8899999999999999999887 555666779999999999999999999999


Q ss_pred             HHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchh
Q 014088          164 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK  242 (431)
Q Consensus       164 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  242 (431)
                      +++++|++.+.+...+.+++.|+++.|..++. ++...++..|+|+++|++.++..+++.+++.+++|.|+.+|++. +.
T Consensus       300 LRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef  378 (514)
T KOG0166|consen  300 LRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EF  378 (514)
T ss_pred             HhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-ch
Confidence            99999999999999999999999999999998 56677999999999999999999999999999999999999999 89


Q ss_pred             hHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC-------HHHHHHHHHCCC
Q 014088          243 SIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-------NEQIKFLVSQGC  314 (431)
Q Consensus       243 ~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~  314 (431)
                      ++|++|+|+++|++. ++++...++++.|++++++++|...+.++...++.++.++...+.       ......+.+.|+
T Consensus       379 ~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~gg  458 (514)
T KOG0166|consen  379 DIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGG  458 (514)
T ss_pred             HHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccC
Confidence            999999999999998 689999999999999999999999999999999999999976542       234456668899


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088          315 IKPLCDLLNCPDPRIVTVCLEGLENILKAG  344 (431)
Q Consensus       315 l~~L~~ll~~~~~~v~~~al~~L~~l~~~~  344 (431)
                      ++++-.+-.+.+.++...|..++.+.+..+
T Consensus       459 ldkiE~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  459 LDKIENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             hhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999887654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=4.7e-38  Score=267.08  Aligned_cols=329  Identities=25%  Similarity=0.348  Sum_probs=287.8

Q ss_pred             hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHH
Q 014088            7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALG   84 (431)
Q Consensus         7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~   84 (431)
                      .++.|.+|.|+.      |+++.+.+++++++|+|+|++.+++..|+++.+.|+++.++.++.+.  +..+.+.+.|+|+
T Consensus       153 Vvd~~AVPlfiq------lL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS  226 (526)
T COG5064         153 VVDAGAVPLFIQ------LLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS  226 (526)
T ss_pred             EEeCCchHHHHH------HHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence            356799999999      66677789999999999999999999999999999999999998874  4588999999999


Q ss_pred             HhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHH
Q 014088           85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDA  163 (431)
Q Consensus        85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  163 (431)
                      |+|+.....-+.-.-...++.|.+++ .+.|+++...|+|++++++... .........+..+.|+++|.+++..++..+
T Consensus       227 NlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPa  305 (526)
T COG5064         227 NLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA  305 (526)
T ss_pred             HhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHH
Confidence            99964321111111123688888888 8889999999999999999986 444455557888899999999999999999


Q ss_pred             HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhh
Q 014088          164 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  243 (431)
Q Consensus       164 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  243 (431)
                      ++.++|+..+.+...+.++..|+++.+..+|.++...++..+||+++|+..++.++.+.+++.+++|.|+.+|... +..
T Consensus       306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k  384 (526)
T COG5064         306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYK  384 (526)
T ss_pred             HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHH
Confidence            9999999999998889999999999999999999999999999999999999999999999999999999999988 999


Q ss_pred             HHHHHHHHHHHhhc---CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCH----------HHHHHHH
Q 014088          244 IKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN----------EQIKFLV  310 (431)
Q Consensus       244 v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~  310 (431)
                      ++++|||+++|.+.   ..|+.++++++.|++.+|+++|...+.++-+.++.++.|+...+..          .+..++.
T Consensus       385 ~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE  464 (526)
T COG5064         385 IKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVE  464 (526)
T ss_pred             HHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHH
Confidence            99999999999997   3689999999999999999999999888888899999999876532          3444555


Q ss_pred             HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088          311 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       311 ~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~  343 (431)
                      +.|+++.+..+-++.+..+..+|..++..++..
T Consensus       465 ~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFge  497 (526)
T COG5064         465 KAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGE  497 (526)
T ss_pred             hcccHHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence            689999999999999999999999999988743

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=302.71  Aligned_cols=378  Identities=19%  Similarity=0.209  Sum_probs=330.4

Q ss_pred             hhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 014088            6 LRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN   85 (431)
Q Consensus         6 ~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~   85 (431)
                      ...+.|++|.++.      +..++++..|..|++.|++++.++++++..+++.|++|.|+++|.+++..+++.|+|+|+|
T Consensus       441 aIi~~ggIp~LV~------LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~N  514 (2102)
T PLN03200        441 ALGGREGVQLLIS------LLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWN  514 (2102)
T ss_pred             HHHHcCcHHHHHH------HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            3456688999999      5556778999999999999999889999999999999999999999999999999999999


Q ss_pred             hcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-----------------------------
Q 014088           86 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-----------------------------  136 (431)
Q Consensus        86 l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-----------------------------  136 (431)
                      ++.+.+..+..+...|++++|+++| ++.+.+.+..++|+|.+++......                             
T Consensus       515 La~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIls  593 (2102)
T PLN03200        515 LCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLS  593 (2102)
T ss_pred             HhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Confidence            9998878888888899999999999 6668999999999999997532110                             


Q ss_pred             -----Chh----hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHH
Q 014088          137 -----LFE----QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  207 (431)
Q Consensus       137 -----~~~----~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  207 (431)
                           ...    ...++++.|.++++++++++++.|+|+|.+++.+.++..+.++..|+++.++.+|++.+.+++..+++
T Consensus       594 l~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~  673 (2102)
T PLN03200        594 VASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSAR  673 (2102)
T ss_pred             hcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHH
Confidence                 000    02468999999999999999999999999999998888888999999999999999999999999999


Q ss_pred             HHhHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhH
Q 014088          208 TVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  286 (431)
Q Consensus       208 ~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  286 (431)
                      +|++++... +.+...+++.|+++.|+++|++. +.+++..|+.+|.|++.. ++....+.+.|+++.|++++.+++++.
T Consensus       674 AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~  751 (2102)
T PLN03200        674 ALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSD-PEVAAEALAEDIILPLTRVLREGTLEG  751 (2102)
T ss_pred             HHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcC-chHHHHHHhcCcHHHHHHHHHhCChHH
Confidence            999999644 34456678999999999999998 999999999999999997 566778888999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHH-H-HHHHHCCChHHHHhhcCCCCHHHHHH--HHHHHHHHHHhhhhhhhcCCCCCcchHHHH
Q 014088          287 KKEAAWAISNATSGGSNEQ-I-KFLVSQGCIKPLCDLLNCPDPRIVTV--CLEGLENILKAGEAEKNMGNTGGVNLFAQA  362 (431)
Q Consensus       287 ~~~a~~aL~~l~~~~~~~~-~-~~l~~~~~l~~L~~ll~~~~~~v~~~--al~~L~~l~~~~~~~~~~~~~~~~~~~~~~  362 (431)
                      |++|+++|.+++...+.+. . ..+...|.+.+|+++|+..|.+....  ++.+|..+.+..+...     ...+++..+
T Consensus       752 k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~-----~~~~~~~~~  826 (2102)
T PLN03200        752 KRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGAN-----FSHPPWAVL  826 (2102)
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCC-----CCCCchhhH
Confidence            9999999999999886544 3 56678999999999999888776665  9999999998655543     234668889


Q ss_pred             HHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088          363 IDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       363 l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  397 (431)
                      ++..++++.|...+.+.+|.++++|..+|++++.+
T Consensus       827 ~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~  861 (2102)
T PLN03200        827 AEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD  861 (2102)
T ss_pred             HhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence            99999999998888999999999999999999875

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.4e-34  Score=302.06  Aligned_cols=365  Identities=18%  Similarity=0.221  Sum_probs=321.3

Q ss_pred             hhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088            9 ECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG   88 (431)
Q Consensus         9 ~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   88 (431)
                      +.|+++.+|.      |..+.+.++|..++++|.+++.++.+.++.+.+.|++|.|+++|.+++..+++.++|+|++++.
T Consensus       402 ~~daik~LV~------LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~  475 (2102)
T PLN03200        402 HAEAKKVLVG------LITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTD  475 (2102)
T ss_pred             hccchhhhhh------hhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            3456666666      5556678999999999999999889999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh-HhhhHHHHHHhhcCCChHHHHHHHHHH
Q 014088           89 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPALERLIHSNDDEVLTDACWAL  167 (431)
Q Consensus        89 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L  167 (431)
                      .+++.+..+.+.|++++|+++| .+++.++++.|+|+|+|++.+.+..+... ..|.+|.|+++|++++++.+..++++|
T Consensus       476 ~ndenr~aIieaGaIP~LV~LL-~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL  554 (2102)
T PLN03200        476 EVDESKWAITAAGGIPPLVQLL-ETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTL  554 (2102)
T ss_pred             CCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence            8888899999999999999999 67889999999999999998754444333 469999999999999999999999999


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh---hhHHHhhcCChHHHHHHhcccchhhH
Q 014088          168 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSI  244 (431)
Q Consensus       168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v  244 (431)
                      .+++.+.+..        .++.++.++.++++.++..++.+++++....+.   ........++++.|.++++++ ++.+
T Consensus       555 ~nLi~~~d~~--------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~i  625 (2102)
T PLN03200        555 TKLVRTADAA--------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEET  625 (2102)
T ss_pred             HHHHhccchh--------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHH
Confidence            9998765432        337788899999999999999999998653332   222233579999999999999 9999


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 014088          245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC  324 (431)
Q Consensus       245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~  324 (431)
                      ++.|+|+|.|++.++++..+.++..|++++++.++..++.+++++++|+|.+++.....++...+.+.|++++|+++++.
T Consensus       626 kk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~  705 (2102)
T PLN03200        626 QEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS  705 (2102)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999899999999999999999999999999999999999999988777888888999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 014088          325 PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE  402 (431)
Q Consensus       325 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~  402 (431)
                      .+.++...++.+|.++++.++.             +..+.+.|+++.|.+++.+.+++.|+.|.++|..++.....+|
T Consensus       706 ~d~~v~e~Al~ALanLl~~~e~-------------~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~  770 (2102)
T PLN03200        706 SSIEVAEQAVCALANLLSDPEV-------------AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD  770 (2102)
T ss_pred             CChHHHHHHHHHHHHHHcCchH-------------HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence            9999999999999999998875             3445568999999999999999999999999988887665555

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-31  Score=228.74  Aligned_cols=356  Identities=21%  Similarity=0.247  Sum_probs=312.0

Q ss_pred             hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088           24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  103 (431)
Q Consensus        24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  103 (431)
                      .+..+.++.+|..+..+++|++. +.+++-.+++.+++..|+.-+..+..++|..+..|++|++..+ .++..+...|++
T Consensus        92 ~llqs~d~~Iq~aa~~alGnlAV-n~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d-~nk~kiA~sGaL  169 (550)
T KOG4224|consen   92 ALLQSCDKCIQCAAGEALGNLAV-NMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFD-SNKVKIARSGAL  169 (550)
T ss_pred             HHHhCcchhhhhhhhhhhcccee-ccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccc-cchhhhhhccch
Confidence            45668889999999999999997 6778888888899999999888899999999999999999774 468889999999


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014088          104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  183 (431)
Q Consensus       104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  183 (431)
                      .++.+ |.++.+..+++++..+|.|+....+..+.....|.+|.|++++.++|.+++.+++.++++++-....+ +.+.+
T Consensus       170 ~pltr-LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R-k~Laq  247 (550)
T KOG4224|consen  170 EPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR-KILAQ  247 (550)
T ss_pred             hhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH-HHHHh
Confidence            99999 55889999999999999999998877888888999999999999999999999999999999776544 45777


Q ss_pred             hC--cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHH
Q 014088          184 AG--VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  261 (431)
Q Consensus       184 ~~--~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  261 (431)
                      .+  +++.|+.+++++++.++..|..+|++++.... +...+++.|.+|.++++++++ .-....+...++.|++.+ +-
T Consensus       248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrnisih-pl  324 (550)
T KOG4224|consen  248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNISIH-PL  324 (550)
T ss_pred             cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhcccc-cC
Confidence            66  99999999999999999999999999998765 666789999999999999988 677778888899999986 55


Q ss_pred             HHHHHHHhCCHHHHHHHHccCC-HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 014088          262 QIQAIIEAGIIGPLVNLLLNAE-FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI  340 (431)
Q Consensus       262 ~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l  340 (431)
                      +...+++.|++.+|+++|..++ .+++..|..+|.|++... ....+.+.+.|.++++..++......++...-.++..+
T Consensus       325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L  403 (550)
T KOG4224|consen  325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL  403 (550)
T ss_pred             cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence            5567889999999999999984 559999999999998754 36778889999999999999988889998888888877


Q ss_pred             HHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088          341 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  400 (431)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~  400 (431)
                      .-.+.             ++..+.+.|.++.|..+..+.+++++..|..+|.++.++-++
T Consensus       404 al~d~-------------~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~  450 (550)
T KOG4224|consen  404 ALNDN-------------DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH  450 (550)
T ss_pred             Hhccc-------------cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence            65544             377788899999999999999999999999999888765443

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.3e-29  Score=213.05  Aligned_cols=350  Identities=23%  Similarity=0.267  Sum_probs=297.9

Q ss_pred             CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHH
Q 014088           28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL  107 (431)
Q Consensus        28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~  107 (431)
                      ++..++|..++.|+.|++.. ++++..+...|++.++.++-++.+..+|..+..+|.|++.. .+.|+.++..|+++.|+
T Consensus       137 td~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLV  214 (550)
T KOG4224|consen  137 TDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLV  214 (550)
T ss_pred             CCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhh
Confidence            45569999999999999985 78999999999999999988899999999999999999754 45789999999999999


Q ss_pred             HHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhh--hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhC
Q 014088          108 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP--ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG  185 (431)
Q Consensus       108 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  185 (431)
                      +++ .+.|.+++.+++.++++++-+....+.....+  ++|.|+.++.+++++++..|..+|++++.+.. .+..+++.|
T Consensus       215 sll-~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag  292 (550)
T KOG4224|consen  215 SLL-KSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAG  292 (550)
T ss_pred             hhh-ccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcC
Confidence            999 88899999999999999998864455554444  99999999999999999999999999998765 445589999


Q ss_pred             cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHH
Q 014088          186 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA  265 (431)
Q Consensus       186 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  265 (431)
                      .+|.++++++++..........|+.|++.+.- +...+++.|++.+|+.+|....+++++-.|..+|.|++..+......
T Consensus       293 ~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~  371 (550)
T KOG4224|consen  293 SLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSV  371 (550)
T ss_pred             CchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHH
Confidence            99999999999988888999999999988644 44567799999999999998856779999999999999988899999


Q ss_pred             HHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088          266 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       266 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  345 (431)
                      +.+.|.+|.+..++.++...++.+...++..++.+.  .....+.+.|+++.|+.++.+.+.+++-.+..+|.|+...-+
T Consensus       372 i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~  449 (550)
T KOG4224|consen  372 IRESGAIPKLIELLLDGPVSVQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE  449 (550)
T ss_pred             HhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence            999999999999999999999999999999998865  566788899999999999999999999999999999987654


Q ss_pred             hhhhcCCCCCcchHHHHHHhh----ccH-HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          346 AEKNMGNTGGVNLFAQAIDDA----EGL-EKIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       346 ~~~~~~~~~~~~~~~~~l~~~----~~~-~~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      .            |...++--    +++ -.|.++..++...++..|.|.+..+..
T Consensus       450 ~------------YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle  493 (550)
T KOG4224|consen  450 H------------YARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE  493 (550)
T ss_pred             H------------HHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            3            33333221    122 235556666667777777776666543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.94  E-value=8.3e-24  Score=205.13  Aligned_cols=354  Identities=20%  Similarity=0.193  Sum_probs=293.0

Q ss_pred             hhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088            9 ECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG   88 (431)
Q Consensus         9 ~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   88 (431)
                      +.|+++.++.     +|. +++.++...++.+|.+++. ..+++..+.+.|+++.|.+++.+++..++..++++|.|++.
T Consensus       288 ~~~iV~~Lv~-----~Ld-r~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf  360 (708)
T PF05804_consen  288 NKGIVSLLVK-----CLD-RENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF  360 (708)
T ss_pred             hcCCHHHHHH-----HHc-CCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc
Confidence            4467777776     554 5678999999999999998 67899999999999999999999999999999999999998


Q ss_pred             CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHH
Q 014088           89 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWAL  167 (431)
Q Consensus        89 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L  167 (431)
                      +.. .|..++..|.++.|+.+|.   ++..+..++.+|+++|.+..........+.+|.+++++- .+++++...++..+
T Consensus       361 d~~-~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~  436 (708)
T PF05804_consen  361 DPE-LRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALL  436 (708)
T ss_pred             CHH-HHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHH
Confidence            764 6999999999999999994   345667899999999998766666666789999998765 45677778888999


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHH
Q 014088          168 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  247 (431)
Q Consensus       168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~  247 (431)
                      .|++.+.. ..+.+.+.++++.|+........   ...++.+.|++.+.+.....+.  +.+..|+..+..+.+++...+
T Consensus       437 iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE  510 (708)
T PF05804_consen  437 INLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVE  510 (708)
T ss_pred             HHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHH
Confidence            99998875 45778888889999887644332   2355789999988754443333  578888888887768899999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-
Q 014088          248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-  324 (431)
Q Consensus       248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-  324 (431)
                      ++.+|+|+...+.+..+.+.+.+++|.+.++|..+  ..++..+++.+++.++..  ++.+..+.+.|+++.|+++++. 
T Consensus       511 ~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~k  588 (708)
T PF05804_consen  511 CLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAK  588 (708)
T ss_pred             HHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhh
Confidence            99999999987667677777789999999999876  568999999999999874  4788888899999999999975 


Q ss_pred             -CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088          325 -PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  393 (431)
Q Consensus       325 -~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  393 (431)
                       .|.++....+.++++++.+.+..            ..++.+.+....+.+++++.|+++++.|..+|+-
T Consensus       589 qeDdE~VlQil~~f~~ll~h~~tr------------~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldi  646 (708)
T PF05804_consen  589 QEDDEIVLQILYVFYQLLFHEETR------------EVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDI  646 (708)
T ss_pred             CchHHHHHHHHHHHHHHHcChHHH------------HHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence             46889999999999999886542            4556778889999999999999999888777765

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.89  E-value=2.9e-20  Score=180.60  Aligned_cols=324  Identities=18%  Similarity=0.191  Sum_probs=266.4

Q ss_pred             chhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 014088            5 DLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG   84 (431)
Q Consensus         5 ~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~   84 (431)
                      +...+.|++|.+++      +..+++.+++..++++|.|++. +++.|..+++.|++|.|+.+|.++  ..+..++.+|.
T Consensus       325 ~~m~~~giV~kL~k------Ll~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy  395 (708)
T PF05804_consen  325 DEMAESGIVEKLLK------LLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILY  395 (708)
T ss_pred             HHHHHcCCHHHHHH------HhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHH
Confidence            34457799999999      6667888999999999999998 688999999999999999999864  45667999999


Q ss_pred             HhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC-CChHHHHHH
Q 014088           85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDA  163 (431)
Q Consensus        85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a  163 (431)
                      ++|.+. ..|..+...++++.+++++..++++.+...+++++.|++.+....+.....++++.|++..-. .++-    .
T Consensus       396 ~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----L  470 (708)
T PF05804_consen  396 NLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----L  470 (708)
T ss_pred             HhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----H
Confidence            999865 468889999999999999878788888888999999999997666555566788888876543 4433    3


Q ss_pred             HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-ch
Q 014088          164 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YK  241 (431)
Q Consensus       164 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~  241 (431)
                      +..+.|++.+++.....+.  +++..++.++.. ++++....++++|+|+...+....+.+-+.+++|.+.++|..+ ..
T Consensus       471 lKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~  548 (708)
T PF05804_consen  471 LKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE  548 (708)
T ss_pred             HHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            4688999998854434343  577778887766 4678899999999999876655555556789999999999755 24


Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHH-HCCChHHH
Q 014088          242 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPL  318 (431)
Q Consensus       242 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~l~~L  318 (431)
                      +++..+++..++.++.. +.....+.+.|+++.|++++...  |.++..+.++++..+..+.  +.+..+. +.+++..|
T Consensus       549 dDl~LE~Vi~~gtla~d-~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~yl  625 (708)
T PF05804_consen  549 DDLLLEVVILLGTLASD-PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE--ETREVLLKETEIPAYL  625 (708)
T ss_pred             hHHHHHHHHHHHHHHCC-HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh--HHHHHHHhccchHHHH
Confidence            67999999999999875 78788888999999999999775  7899999999999999986  4555554 57899999


Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088          319 CDLLNCPDPRIVTVCLEGLENILKAGEAE  347 (431)
Q Consensus       319 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~  347 (431)
                      ++++++++++++..|-.+|--++..++..
T Consensus       626 idL~~d~N~~ir~~~d~~Ldii~e~d~~w  654 (708)
T PF05804_consen  626 IDLMHDKNAEIRKVCDNALDIIAEYDEEW  654 (708)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence            99999999999999999999888877654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.87  E-value=1.1e-19  Score=172.60  Aligned_cols=360  Identities=19%  Similarity=0.193  Sum_probs=279.8

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChH--HHHHHH
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--CRDLVL   98 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~   98 (431)
                      .+++|. +.++.+|..|..-+.-+|..+.+.+..+.+.|+|+.|+.+|.++..+++.+++++|.||......  ++-.+.
T Consensus       238 ~i~mL~-~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~  316 (717)
T KOG1048|consen  238 VISMLM-SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIK  316 (717)
T ss_pred             HHHHHh-ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhh
Confidence            445665 66789999999999999999999999999999999999999999999999999999999965544  678899


Q ss_pred             HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--------------ChHHHHHHH
Q 014088           99 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--------------DDEVLTDAC  164 (431)
Q Consensus        99 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--------------~~~v~~~a~  164 (431)
                      +.++++.++++|++..|.++++.+..+||||+..+ ...+......++.|...+-.+              +.++..++.
T Consensus       317 ~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~t  395 (717)
T KOG1048|consen  317 ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVT  395 (717)
T ss_pred             hcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhh
Confidence            99999999999988899999999999999999883 444455566677666544311              357888999


Q ss_pred             HHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCcccHHHHHHHHhHhhcCCh-----hh-------------
Q 014088          165 WALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDD-----MQ-------------  219 (431)
Q Consensus       165 ~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~-----~~-------------  219 (431)
                      .||.|++....+..+.+.+. |++..|+..+++      .+....++|+.++.|++..-.     ..             
T Consensus       396 gcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~  475 (717)
T KOG1048|consen  396 GCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGV  475 (717)
T ss_pred             hhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccC
Confidence            99999998776666666554 889999888753      466778899999999985322     00             


Q ss_pred             -------------hHH----------------------HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC----H
Q 014088          220 -------------TQC----------------------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN----V  260 (431)
Q Consensus       220 -------------~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~----~  260 (431)
                                   .+.                      +....++..-..+|....++.+.+.++.+|-|++.+.    .
T Consensus       476 ~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~  555 (717)
T KOG1048|consen  476 GPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSE  555 (717)
T ss_pred             CCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchh
Confidence                         000                      0111224443445544447888999999999999842    2


Q ss_pred             HHHHHH-HHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC------CHHHHHHH
Q 014088          261 NQIQAI-IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP------DPRIVTVC  333 (431)
Q Consensus       261 ~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~------~~~v~~~a  333 (431)
                      ..+..+ .+..+++.+++++..++..|...++.+|.|++.+.  .. +.++...+++.|++.|...      +.++...+
T Consensus       556 ~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~v  632 (717)
T KOG1048|consen  556 YMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAV  632 (717)
T ss_pred             HHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHH
Confidence            333333 46788999999999999999999999999999865  33 3445588999999999643      35888899


Q ss_pred             HHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCC
Q 014088          334 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       334 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~~~~  397 (431)
                      +.+|.+++...-.            ....+.+.+++++|..+. ...++.+.+.|...+..+|+.
T Consensus       633 c~tl~niv~~~~~------------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y  685 (717)
T KOG1048|consen  633 CHTLNNIVRKNVL------------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY  685 (717)
T ss_pred             HHhHHHHHHHhHH------------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            9999999965443            244556799999999995 456779999999999998874

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.79  E-value=3.7e-16  Score=150.54  Aligned_cols=369  Identities=17%  Similarity=0.186  Sum_probs=276.6

Q ss_pred             hhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH
Q 014088           15 LFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR   94 (431)
Q Consensus        15 ~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   94 (431)
                      .+..+.+..+|..+ +.+....++.+|..+.... .....  ..++.+.+...|.++++.+|..+++.+.++..++....
T Consensus        37 ~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~  112 (503)
T PF10508_consen   37 RLPEPVLFDCLNTS-NREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA  112 (503)
T ss_pred             hchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            34444466677755 4566678888888877632 22222  44778999999999999999999999999998888777


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014088           95 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  174 (431)
Q Consensus        95 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  174 (431)
                      ..+.+.+.++.++..+ .+++..+...|..+|.+++.+.+........+.++.|..++..++..+|..++.++.+++...
T Consensus       113 ~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S  191 (503)
T PF10508_consen  113 QLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS  191 (503)
T ss_pred             HHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Confidence            7888899999999999 888999999999999999987644443334566888999998888899999999999999999


Q ss_pred             hHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhh-----HHHHHH
Q 014088          175 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-----IKKEAC  249 (431)
Q Consensus       175 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~-----v~~~a~  249 (431)
                      ++......+.|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|.+++.+...+.     .....+
T Consensus       192 ~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~  270 (503)
T PF10508_consen  192 PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM  270 (503)
T ss_pred             HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH
Confidence            8888888889999999999999988999999999999999 5556778889999999999997663333     223334


Q ss_pred             HHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHH-HHC-C----ChHHHHhhcC
Q 014088          250 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL-VSQ-G----CIKPLCDLLN  323 (431)
Q Consensus       250 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~-~----~l~~L~~ll~  323 (431)
                      ...++++...+....... ..++..+.+++.+.+...+..|+.+++.++...  +....+ ... +    ++..+.....
T Consensus       271 ~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~--~G~~~L~~~~~~~~~~~l~~~~~~~~  347 (503)
T PF10508_consen  271 KFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTV--EGKQLLLQKQGPAMKHVLKAIGDAIK  347 (503)
T ss_pred             HHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH--HHHHHHHhhcchHHHHHHHHHHHHhc
Confidence            666777774344332222 336667777888889999999999999998643  555555 322 2    3555555666


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCc-chHHHHHHhhc--cHH-HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          324 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV-NLFAQAIDDAE--GLE-KIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       324 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~~--~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      ....+++..++.++.+++........    ... +.....+...+  ... .+..+.+.|-+++|-.+..+|..++.
T Consensus       348 ~~~~~lk~r~l~al~~il~~~~~~~~----~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  348 SGSTELKLRALHALASILTSGTDRQD----NDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA  420 (503)
T ss_pred             CCchHHHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            77789999999999999865543110    001 11122222222  233 66777889999999999988887654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.78  E-value=2.2e-15  Score=145.23  Aligned_cols=357  Identities=17%  Similarity=0.174  Sum_probs=268.1

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS   99 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   99 (431)
                      .+...|. ++++.+|..+++.|.+++.++....+.+.+.++++.++..+.+++..+...|+.+|.+++..... .+.++.
T Consensus        81 ~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~  158 (503)
T PF10508_consen   81 FLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFD  158 (503)
T ss_pred             HHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhC
Confidence            4555555 67799999999999999998888788889999999999999999999999999999999987765 456777


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH
Q 014088          100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI  178 (431)
Q Consensus       100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  178 (431)
                      .+.+..|..++ ...+..+|..+..++.+++...+.. ......|+++.++..++++|.-++..++.++..++.. +...
T Consensus       159 ~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~  236 (503)
T PF10508_consen  159 SNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHGL  236 (503)
T ss_pred             cchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHH
Confidence            78888888888 5557788999999999999876333 3444578999999999999999999999999999994 4556


Q ss_pred             HHHHHhCcHHHHHHhcCCCCcc-----cH-HHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHH
Q 014088          179 QAVIEAGVCPRLVELLRHPSPS-----VL-IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  252 (431)
Q Consensus       179 ~~~~~~~~i~~L~~ll~~~~~~-----v~-~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  252 (431)
                      +.+.+.|+++.|...+.+.+.+     +. ...+...++++...+....... ..++..+.+++.+. +...+..|.-++
T Consensus       237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtl  314 (503)
T PF10508_consen  237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTL  314 (503)
T ss_pred             HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHH
Confidence            7789999999999999663222     22 2344777778775332222111 23555666777777 899999999999


Q ss_pred             HHhhcCCHHHHHHH-HHh-CC----HHHHHHHHccCCHhHHHHHHHHHHHhcCCCCH---H----HHHHHH---HCCChH
Q 014088          253 SNITAGNVNQIQAI-IEA-GI----IGPLVNLLLNAEFEIKKEAAWAISNATSGGSN---E----QIKFLV---SQGCIK  316 (431)
Q Consensus       253 ~nl~~~~~~~~~~l-~~~-~~----i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~---~----~~~~l~---~~~~l~  316 (431)
                      +.++.. .+....+ ... +.    +..+......+..++|..++.++.++....+.   +    ......   ..+...
T Consensus       315 g~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~  393 (503)
T PF10508_consen  315 GQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLS  393 (503)
T ss_pred             HHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchH
Confidence            999865 6666666 432 23    44444455566789999999999999655432   1    112211   234444


Q ss_pred             -HHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088          317 -PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       317 -~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  395 (431)
                       .+..+++.+=++++..++..|..++...+..            +.+....|+++-+.+=....+++.++.=-.++..+.
T Consensus       394 ~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~------------~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  394 NLLMSLLKQPFPELRCAAYRLLQALAAQPWGQ------------REICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHhcCHHHH------------HHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence             7788888777999999999999999887653            556777777777766555567777666555555555

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.76  E-value=2.6e-16  Score=139.05  Aligned_cols=340  Identities=16%  Similarity=0.140  Sum_probs=249.0

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC----C---CHHHHHHHHHHHHHhcCCChHHHHHH
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----P---TDDVREQAVWALGNVAGDSPKCRDLV   97 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~---~~~v~~~a~~~L~~l~~~~~~~~~~i   97 (431)
                      +.+|++.++-.++.++|+|+|.++.+.|..+.+.|+-..++..|+.    .   +.+....+...|.|..-++.+.+..+
T Consensus        95 ~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~  174 (604)
T KOG4500|consen   95 TPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQV  174 (604)
T ss_pred             CCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHH
Confidence            4567778999999999999999999999999999998888888865    1   24666677789999999999999999


Q ss_pred             HHcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCC--CCChhhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccC
Q 014088           98 LSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDG  173 (431)
Q Consensus        98 ~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~  173 (431)
                      .+.|.++.|...+- ..++...-+.......|+..--.  -........+.-.+++++.+ -++++.+.+...+...+.+
T Consensus       175 ~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen  254 (604)
T KOG4500|consen  175 ADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN  254 (604)
T ss_pred             HhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC
Confidence            99999999988874 22333333444433333332110  01111123444455666653 3677888889999999988


Q ss_pred             ChHHHHHHHHhCcHHHHHHhcCC-CCcc-------cHHHHHHHHhHhhcCChhhhHHHhhcC-ChHHHHHHhcccchhhH
Q 014088          174 TNDKIQAVIEAGVCPRLVELLRH-PSPS-------VLIPALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSI  244 (431)
Q Consensus       174 ~~~~~~~~~~~~~i~~L~~ll~~-~~~~-------v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v  244 (431)
                      +..+.. +.+.|.+..++++++. ++..       ....++..+.-+..+.+ ..+.+...+ +++.+..++.+. +...
T Consensus       255 d~Vkl~-la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l  331 (604)
T KOG4500|consen  255 DLVKLS-LAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNL  331 (604)
T ss_pred             cceeee-hhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhH
Confidence            765544 7778999999998866 2222       22334444444444444 455566555 899999999999 9999


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc-----CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088          245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC  319 (431)
Q Consensus       245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~  319 (431)
                      .-.+..+++|+++. ++.+.++++.+++..|++++..     ++.+++..++.+|.|+...-  .....+...|+.+.+.
T Consensus       332 ~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL  408 (604)
T KOG4500|consen  332 ITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAIL  408 (604)
T ss_pred             HHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHH
Confidence            99999999999998 5667888999999999999965     36788899999999998754  4566778999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCH
Q 014088          320 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT  381 (431)
Q Consensus       320 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~  381 (431)
                      ..++...|.+...-+..++-+....+..           ..+.......+++|++...+++-
T Consensus       409 ~~lk~~~ppv~fkllgTlrM~~d~qe~~-----------a~eL~kn~~l~ekLv~Wsks~D~  459 (604)
T KOG4500|consen  409 LQLKLASPPVTFKLLGTLRMIRDSQEYI-----------ACELAKNPELFEKLVDWSKSPDF  459 (604)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHhchHHH-----------HHHHhcCHHHHHHHHHhhhCCcc
Confidence            9999999999998888888665444322           24445555567777777666653

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.3e-15  Score=144.74  Aligned_cols=349  Identities=18%  Similarity=0.232  Sum_probs=271.9

Q ss_pred             hhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHH
Q 014088           16 FVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCR   94 (431)
Q Consensus        16 ~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~   94 (431)
                      .+.|.|+.+|....+.+++..|+++|.+++.--|+....+++.++||.|+.-|.. ...++.++++.+|..|++..+.  
T Consensus       211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~--  288 (1051)
T KOG0168|consen  211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK--  288 (1051)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH--
Confidence            3445566688877789999999999999999889999999999999999996665 8899999999999999987653  


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc--
Q 014088           95 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD--  172 (431)
Q Consensus        95 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--  172 (431)
                       .+.++|++...+..| .--+..+++.|+.+..|+|..-+..........+|.|..+|...+.+..+.++-++..++.  
T Consensus       289 -AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f  366 (1051)
T KOG0168|consen  289 -AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF  366 (1051)
T ss_pred             -HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence             788999999999999 6667889999999999999998666677778899999999999999999999999999875  


Q ss_pred             -CChHHHHHHHHhCcHHHHHHhcCCC----CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc-------
Q 014088          173 -GTNDKIQAVIEAGVCPRLVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-------  240 (431)
Q Consensus       173 -~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-------  240 (431)
                       +.+++.+.+...+++....+++.-.    +..+..-.++.+..++.+.+-....+...++...|..+|....       
T Consensus       367 ~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~  446 (1051)
T KOG0168|consen  367 QHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASL  446 (1051)
T ss_pred             ccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccccc
Confidence             4566777888889999999998653    3345666778888888887767777777777777777773210       


Q ss_pred             ------hhhHHHHHHH----------------------------------------------------HHH---------
Q 014088          241 ------KKSIKKEACW----------------------------------------------------TIS---------  253 (431)
Q Consensus       241 ------~~~v~~~a~~----------------------------------------------------~L~---------  253 (431)
                            .+.-..+...                                                    .+.         
T Consensus       447 ~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~  526 (1051)
T KOG0168|consen  447 HELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTS  526 (1051)
T ss_pred             ccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccc
Confidence                  0000000000                                                    001         


Q ss_pred             -------------HhhcCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHH-CCChHHH
Q 014088          254 -------------NITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPL  318 (431)
Q Consensus       254 -------------nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L  318 (431)
                                   .+....|+..+.++. .++|.|++++.+. ++.||..++.+|..+....+.+.++.++. ..+-..+
T Consensus       527 ~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~l  605 (1051)
T KOG0168|consen  527 RKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHL  605 (1051)
T ss_pred             hhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHH
Confidence                         011112233333333 3789999999876 99999999999999999888888777664 5666778


Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCC
Q 014088          319 CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN  380 (431)
Q Consensus       319 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~  380 (431)
                      -.++.+++..+..-|+....-+++.-..           .|...|.+.|.+..+.+|....+
T Consensus       606 AG~lsskD~~vlVgALQvAEiLmeKlpd-----------~F~~~F~REGV~~~v~~L~~~~~  656 (1051)
T KOG0168|consen  606 AGMLSSKDLTVLVGALQVAEILMEKLPD-----------TFSPSFRREGVFHAVKQLSVDSN  656 (1051)
T ss_pred             HhhhhcCCCeeEeehHHHHHHHHHHhHH-----------HhhhhHhhhhHHHHHHHHhccCC
Confidence            8899999999988888888888775533           27888999999999999976443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.7e-15  Score=140.59  Aligned_cols=372  Identities=17%  Similarity=0.204  Sum_probs=243.5

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHH
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVID----HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL   96 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   96 (431)
                      |.++| .+++...++.|..+|.+++.++.+.-+.-..    .-.+|.++++.+++++.+|..|+.++..+....+.  ..
T Consensus       133 L~~~L-~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al  209 (885)
T KOG2023|consen  133 LCELL-DSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--AL  209 (885)
T ss_pred             HHHHh-cCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HH
Confidence            33355 4666789999999999999987665443211    13689999999999999999999999988754432  12


Q ss_pred             HHH-cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014088           97 VLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  175 (431)
Q Consensus        97 i~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  175 (431)
                      ... ..+++.+..+- .+.++++|.+.|.++..|..-.+........+++..+++..++.|.+|.-.||.....++..+-
T Consensus       210 ~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi  288 (885)
T KOG2023|consen  210 YVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI  288 (885)
T ss_pred             HHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC
Confidence            221 12344444444 7889999999999999999888777777788888888888888888888888888877776431


Q ss_pred             HHHHH---------------------------------------------------------------------------
Q 014088          176 DKIQA---------------------------------------------------------------------------  180 (431)
Q Consensus       176 ~~~~~---------------------------------------------------------------------------  180 (431)
                       ....                                                                           
T Consensus       289 -~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~  367 (885)
T KOG2023|consen  289 -CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFS  367 (885)
T ss_pred             -cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccc
Confidence             1010                                                                           


Q ss_pred             -----------------HHHhCcHHHH----HHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhh--cCChHHHHHHhc
Q 014088          181 -----------------VIEAGVCPRL----VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN--HQALPCLLDLLT  237 (431)
Q Consensus       181 -----------------~~~~~~i~~L----~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~l~~L~~lL~  237 (431)
                                       +....+++.+    -..|.++++.+++.++-+++.++.+.   .+-++.  ..++|.++++|.
T Consensus       368 dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p~LpeLip~l~~~L~  444 (885)
T KOG2023|consen  368 DWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVPHLPELIPFLLSLLD  444 (885)
T ss_pred             cccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhcccchHHHHHHHHHHhc
Confidence                             0011122222    22233455556666666666666542   111111  135788899999


Q ss_pred             ccchhhHHHHHHHHHHHhhcC--CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCCh
Q 014088          238 QNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI  315 (431)
Q Consensus       238 ~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l  315 (431)
                      +. .+-||.-.||+|++.+..  +.+ .+.... .++..+++.+-+++.+|++.|+.++..+-....++...++..  ++
T Consensus       445 DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~--IL  519 (885)
T KOG2023|consen  445 DK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEY--IL  519 (885)
T ss_pred             cC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHH--HH
Confidence            88 999999999999998861  112 222222 245667777778899999999999999988776565555433  45


Q ss_pred             HHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC-------------
Q 014088          316 KPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-------------  379 (431)
Q Consensus       316 ~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-------------  379 (431)
                      ..|...++   .++-.+..-|.++|..-+...-...         .|..++. --.+++...|.+++             
T Consensus       520 ~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~---------~YiqiLm-PPLi~KW~~lsd~DKdLfPLLEClSsi  589 (885)
T KOG2023|consen  520 DQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKP---------AYIQILM-PPLIEKWELLSDSDKDLFPLLECLSSI  589 (885)
T ss_pred             HHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcH---------HHHHHhc-cHHHHHHHhcCcccchHHHHHHHHHHH
Confidence            55555554   2343444444444443331111110         0222222 11222222222111             


Q ss_pred             -----------CHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 014088          380 -----------NTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFG  415 (431)
Q Consensus       380 -----------~~~v~~~a~~~l~~~~~~e~~~~~~~~~~~~~~~~~  415 (431)
                                 -+.|+.++-++++++.+..-+.+.+|++++|.+||-
T Consensus       590 a~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfi  636 (885)
T KOG2023|consen  590 ASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFI  636 (885)
T ss_pred             HHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceE
Confidence                       378899999999999999999999999999999994

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=3.8e-14  Score=121.74  Aligned_cols=321  Identities=14%  Similarity=0.144  Sum_probs=250.7

Q ss_pred             hhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHh
Q 014088            9 ECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNV   86 (431)
Q Consensus         9 ~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l   86 (431)
                      +.|..|.++-  +.. |.++++..+...++.+|..+....++    +.+..++..++++|..  ++.++....+.++..-
T Consensus       102 ~~ga~~~~it--~~~-la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~A  174 (461)
T KOG4199|consen  102 KNGAHDALIT--LLE-LAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKA  174 (461)
T ss_pred             cCCCcchhhh--HHH-HhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            4466666665  222 46778888889999999998876554    5567889999998865  6678888888888888


Q ss_pred             cCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC----------ChhhHhhhHHHHHHhhcCC-
Q 014088           87 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP----------LFEQTRPALPALERLIHSN-  155 (431)
Q Consensus        87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~----------~~~~~~~~i~~L~~lL~~~-  155 (431)
                      |....-+|+.+++.++++.+...|.+.....+.+.++|++..|..++..+          +.....+++..|.+.++.. 
T Consensus       175 c~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~  254 (461)
T KOG4199|consen  175 CIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI  254 (461)
T ss_pred             HHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC
Confidence            88788889999999999999988876666689999999999998765221          1222355677888888754 


Q ss_pred             ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCccc---HHHHHHHHhHhhcCChhhhHHHhhcCChHH
Q 014088          156 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSV---LIPALRTVGNIVTGDDMQTQCIINHQALPC  231 (431)
Q Consensus       156 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v---~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  231 (431)
                      +|.+...++.+|..++-.+ +..+.+.+.|++..+++++.+ ++...   ...++..|..++- ++.....+++.|+.+.
T Consensus       255 dp~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~  332 (461)
T KOG4199|consen  255 DPDSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDK  332 (461)
T ss_pred             CccHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHH
Confidence            7899999999999999775 456779999999999999987 33333   4567888888875 4557778899999999


Q ss_pred             HHHHhc-ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHH
Q 014088          232 LLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKF  308 (431)
Q Consensus       232 L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~  308 (431)
                      ++.++. +..++.+..+++.+++-++..+|+.....++.|.-...++.++..  ...++++|++.+.|+...+ .+++..
T Consensus       333 ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~  411 (461)
T KOG4199|consen  333 IITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTI  411 (461)
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccch
Confidence            988773 334789999999999999998899999999999988888888764  6789999999999999875 366666


Q ss_pred             HHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 014088          309 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI  340 (431)
Q Consensus       309 l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l  340 (431)
                      ++.. +++.|+..-+..++.....+-.+|..+
T Consensus       412 ~l~~-GiE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  412 LLAN-GIEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             HHhc-cHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence            5554 478888777777776666666666554

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.70  E-value=2.5e-15  Score=149.61  Aligned_cols=334  Identities=19%  Similarity=0.178  Sum_probs=256.2

Q ss_pred             ccchhhhhhhhhhhhHHHHHhhhccCC--ChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHH----------hhCC
Q 014088            3 CFDLRFECILISLFVDQFFFHCFFSCC--FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR----------LLSS   70 (431)
Q Consensus         3 c~~~~~~~g~~~~~v~~~lv~~L~~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~----------lL~~   70 (431)
                      |..+| ..|-+|.+++     +|...+  +.+.+..|-.+|.||....++.+..-.+..+++.|-+          .++.
T Consensus       228 CaamR-~SgCLpLLvQ-----ilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqa  301 (2195)
T KOG2122|consen  228 CAAMR-RSGCLPLLVQ-----ILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQA  301 (2195)
T ss_pred             hHHHH-hccchHHHHH-----HhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55554 5688888888     554332  3578889999999999877665544444444444332          2222


Q ss_pred             -----CC--HHHHH-HHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc-----------ccchhHHHHHHHHHHHhhc
Q 014088           71 -----PT--DDVRE-QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-----------HAKLSMLRNATWTLSNFCR  131 (431)
Q Consensus        71 -----~~--~~v~~-~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~-----------~~~~~~~~~a~~~L~~l~~  131 (431)
                           .+  ..-+. .|+.+|-.++.+ .+.|..+-+.|++.++-+++.-           .....+|+++..+|-||..
T Consensus       302 r~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTF  380 (2195)
T KOG2122|consen  302 RGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTF  380 (2195)
T ss_pred             cCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccc
Confidence                 11  22233 455666666654 5689999999999999998741           1246799999999999998


Q ss_pred             CCCCCC--hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH-HHHHHHHhCcHHHHHHh-cCCCCcccHHHHHH
Q 014088          132 GKPQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVEL-LRHPSPSVLIPALR  207 (431)
Q Consensus       132 ~~~~~~--~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~  207 (431)
                      ++...+  .....+++..++..|.+...++..-...+|.||+=..+. ....+.+.|-+..|+.. +...+.......+.
T Consensus       381 GDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLS  460 (2195)
T KOG2122|consen  381 GDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLS  460 (2195)
T ss_pred             ccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHH
Confidence            873333  233489999999999999889999999999999854443 34445566777777776 56677788999999


Q ss_pred             HHhHhhcCChhhhHHHh-hcCChHHHHHHhcccc---hhhHHHHHHHHHHHhhc---CCHHHHHHHHHhCCHHHHHHHHc
Q 014088          208 TVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNY---KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLL  280 (431)
Q Consensus       208 ~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~  280 (431)
                      +||||+.+..++...+- -.|.+..|+.+|....   ...+.+.|..+|.|++.   .+.++++.+.+++++..|++.|+
T Consensus       461 ALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK  540 (2195)
T KOG2122|consen  461 ALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK  540 (2195)
T ss_pred             HHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh
Confidence            99999988766655553 4589999999996541   35677788888888775   57888999999999999999999


Q ss_pred             cCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088          281 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  344 (431)
Q Consensus       281 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~  344 (431)
                      +.+..+..++|.+|.||.... ++..++|.+.|.+..|.+++++++..+..-+..+|.|++.+-
T Consensus       541 S~SLTiVSNaCGTLWNLSAR~-p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  541 SHSLTIVSNACGTLWNLSARS-PEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hcceEEeecchhhhhhhhcCC-HHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            999999999999999998865 466788899999999999999999999999999999998765

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=1.3e-14  Score=124.50  Aligned_cols=276  Identities=13%  Similarity=0.115  Sum_probs=229.5

Q ss_pred             hhhc-cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCC---------h
Q 014088           23 HCFF-SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS---------P   91 (431)
Q Consensus        23 ~~L~-~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~---------~   91 (431)
                      .+|. ++++.++-...+.++..-|..++.+|+.+++.++++.+.+.|.. +...+.+.+.|++..+..++         .
T Consensus       152 ~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah  231 (461)
T KOG4199|consen  152 KLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAH  231 (461)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhh
Confidence            3553 45567888999999999999899999999999999999987765 44568888999999987654         2


Q ss_pred             HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC-Ch---HHHHHHHHHH
Q 014088           92 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DD---EVLTDACWAL  167 (431)
Q Consensus        92 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~---~v~~~a~~~L  167 (431)
                      +....+.+.|++..|++.+....++.+...++.+|..++-.++........|++..+++++.+. +.   +..+.++..|
T Consensus       232 ~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslL  311 (461)
T KOG4199|consen  232 GHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLL  311 (461)
T ss_pred             HHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHH
Confidence            4456778888899999999877789999999999999998876666777799999999999874 33   3557788888


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhcC--CCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhH
Q 014088          168 SYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSI  244 (431)
Q Consensus       168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v  244 (431)
                      ..++-+++.+ ..+++.|+.+.++.++.  .++|.+...++.+++-++-..+.....+++.|+-...++.|+.. ....+
T Consensus       312 ralAG~DsvK-s~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~v  390 (461)
T KOG4199|consen  312 RALAGSDSVK-STIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQV  390 (461)
T ss_pred             HHHhCCCchH-HHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHH
Confidence            8888776544 66899999999999873  36788999999999999998899999999999999999999644 35789


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCC
Q 014088          245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  300 (431)
Q Consensus       245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  300 (431)
                      +++|||++.|+...+.+++..++.. .++.|+......++.....|-.+|..+-.+
T Consensus       391 Qrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~  445 (461)
T KOG4199|consen  391 QRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCD  445 (461)
T ss_pred             HHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence            9999999999999878888777776 578899888888888888888888888653

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.69  E-value=3.1e-15  Score=142.62  Aligned_cols=327  Identities=20%  Similarity=0.207  Sum_probs=243.5

Q ss_pred             hhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChH--hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHH
Q 014088            8 FECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSE--NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALG   84 (431)
Q Consensus         8 ~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~   84 (431)
                      .+.|.+|.+|.      |..++..++|.+|+++|.|++.++..  ++-.+.+.++|+.++.+|.. .+.++++.+..+|+
T Consensus       272 rqlggI~kLv~------Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LW  345 (717)
T KOG1048|consen  272 RQLGGIPKLVA------LLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILW  345 (717)
T ss_pred             HHhccHHHHHH------HhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHh
Confidence            35589999999      77789999999999999999987655  88889999999999999987 89999999999999


Q ss_pred             HhcCCChHHHHHHHHcCChHHHHHHhcc-------------ccchhHHHHHHHHHHHhhcCCCC--CChhhHhhhHHHHH
Q 014088           85 NVAGDSPKCRDLVLSNGALMPLLAQFNE-------------HAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALE  149 (431)
Q Consensus        85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~-------------~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~  149 (431)
                      ||++.+ ..+..++ ...+..|......             -.+.++..++..||.|++.....  ..+-...|++..|+
T Consensus       346 NLSS~D-~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~  423 (717)
T KOG1048|consen  346 NLSSND-ALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALL  423 (717)
T ss_pred             cccchh-HHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHH
Confidence            999873 3333333 3345555554421             11367888999999999986522  23334588999888


Q ss_pred             Hhhc------CCChHHHHHHHHHHHHhccCCh-----HHH--------------------------HH------------
Q 014088          150 RLIH------SNDDEVLTDACWALSYLSDGTN-----DKI--------------------------QA------------  180 (431)
Q Consensus       150 ~lL~------~~~~~v~~~a~~~L~~l~~~~~-----~~~--------------------------~~------------  180 (431)
                      ..++      ..+.+..+++...+.|++..-.     ...                          +.            
T Consensus       424 ~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe  503 (717)
T KOG1048|consen  424 FSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPE  503 (717)
T ss_pred             HHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcc
Confidence            8776      2366778888889999874221     000                          00            


Q ss_pred             ----------HHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHhhcCCh----hhhHHH-hhcCChHHHHHHhcccchhhH
Q 014088          181 ----------VIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDD----MQTQCI-INHQALPCLLDLLTQNYKKSI  244 (431)
Q Consensus       181 ----------~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~----~~~~~~-~~~~~l~~L~~lL~~~~~~~v  244 (431)
                                +....++..-..++ ...++.+.+.++.+|-|++.+..    .....+ ...++++.++++|..+ ++.+
T Consensus       504 ~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~v  582 (717)
T KOG1048|consen  504 RATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDV  582 (717)
T ss_pred             cccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchH
Confidence                      00111222212223 23456788999999999998753    222333 4779999999999999 9999


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC------CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHH
Q 014088          245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL  318 (431)
Q Consensus       245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L  318 (431)
                      ...++.+|.|++.+ ... +.++..++++.|++.|...      +.++...++.+|.++.... ....+-+.+.+.+++|
T Consensus       583 v~s~a~~LrNls~d-~rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~-~~nAkdl~~~~g~~kL  659 (717)
T KOG1048|consen  583 VRSAAGALRNLSRD-IRN-KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN-VLNAKDLLEIKGIPKL  659 (717)
T ss_pred             HHHHHHHHhhhccC-chh-hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh-HHHHHHHHhccChHHH
Confidence            99999999999986 443 4455578999999999765      3678889999999998754 5788888999999999


Q ss_pred             HhhcCCC-CHHHHHHHHHHHHHHHHhhhh
Q 014088          319 CDLLNCP-DPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       319 ~~ll~~~-~~~v~~~al~~L~~l~~~~~~  346 (431)
                      +.+.++. +++..+.+...|..|-.+.+-
T Consensus       660 ~~I~~s~~S~k~~kaAs~vL~~lW~y~eL  688 (717)
T KOG1048|consen  660 RLISKSQHSPKEFKAASSVLDVLWQYKEL  688 (717)
T ss_pred             HHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            9988764 568888888888887776653

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=2.7e-13  Score=121.89  Aligned_cols=360  Identities=16%  Similarity=0.114  Sum_probs=270.9

Q ss_pred             hhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 014088            6 LRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN   85 (431)
Q Consensus         6 ~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~   85 (431)
                      .+.|-......+..+||+.|..++ .++-......|.+++- -.+++..+.+.|+++.|+++....+++++...+..+.|
T Consensus       294 ~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfN  371 (791)
T KOG1222|consen  294 ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFN  371 (791)
T ss_pred             hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence            344444555566667778888665 5777888888888886 57888999999999999999999999999999999999


Q ss_pred             hcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHH
Q 014088           86 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDAC  164 (431)
Q Consensus        86 l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~  164 (431)
                      ++.+.. .|..++..|.+|.+..++.++.   -...|+..+..++.+.....+......++.+.+.+- ..+.++-...+
T Consensus       372 lSFD~g-lr~KMv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~li  447 (791)
T KOG1222|consen  372 LSFDSG-LRPKMVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALI  447 (791)
T ss_pred             cccccc-ccHHHhhccchHHHHHHhCCcc---cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHH
Confidence            998764 6888899999999999995332   235578888999888766666677888998887654 44566655555


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhh
Q 014088          165 WALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  243 (431)
Q Consensus       165 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  243 (431)
                      ..-.|++-+.. ..+.+++..++..|+..- ...++    .....+.|++.+.......+++  .+..|...++...++.
T Consensus       448 a~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~  520 (791)
T KOG1222|consen  448 ALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSES  520 (791)
T ss_pred             HHHHHHHhccc-cceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHH
Confidence            55567776543 335566666677766543 33332    2456677888776544444543  5777777787765678


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 014088          244 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL  321 (431)
Q Consensus       244 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l  321 (431)
                      ...+++.+++|+...+-+..+.+.+..++|.+-..|..+  ..++....+-+++.++...  .....+...++++.++++
T Consensus       521 F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~--~cA~Lla~a~~i~tlieL  598 (791)
T KOG1222|consen  521 FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL--DCARLLAPAKLIDTLIEL  598 (791)
T ss_pred             HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh--HHHHHhCccccHHHHHHH
Confidence            889999999999987778788888899999999999876  5678888888888888754  566777788999999999


Q ss_pred             cCC--CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 014088          322 LNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE  392 (431)
Q Consensus       322 l~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  392 (431)
                      ++.  .+.++....+..+..+++....            -+-++++...-.-+.+|+++.|.++|+-+...|.
T Consensus       599 L~a~QeDDEfV~QiiyVF~Q~l~He~t------------r~~miket~~~AylIDLMHDkN~eiRkVCDn~Ld  659 (791)
T KOG1222|consen  599 LQACQEDDEFVVQIIYVFLQFLKHELT------------RRLMIKETALGAYLIDLMHDKNAEIRKVCDNALD  659 (791)
T ss_pred             HHhhcccchHHHHHHHHHHHHHHHHHH------------HHHHHhhccchHHHHHHHhcccHHHHHHHHHHHH
Confidence            974  4667777888888888877322            1456777777777999999999999876655443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.66  E-value=5.7e-15  Score=147.12  Aligned_cols=371  Identities=20%  Similarity=0.179  Sum_probs=273.5

Q ss_pred             HHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhcCCChHH---HHHHHHcCChHHH-
Q 014088           34 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPL-  106 (431)
Q Consensus        34 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~~i~~l-  106 (431)
                      ++.-.+.+..++. +++.+..+...|.++.|+++|..   .+.+.+..+-.+|.||....++.   |..+.....++.+ 
T Consensus       211 ~ee~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr  289 (2195)
T KOG2122|consen  211 EEEMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR  289 (2195)
T ss_pred             HHHHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence            4555666777776 78888899999999999999976   35788999999999998655432   2222211122211 


Q ss_pred             --HHHh----c-cc---cchhHH---HHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC---------C---ChHHHH
Q 014088          107 --LAQF----N-EH---AKLSML---RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS---------N---DDEVLT  161 (431)
Q Consensus       107 --~~~l----~-~~---~~~~~~---~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~---------~---~~~v~~  161 (431)
                        +..+    . ..   .+....   ..|+.+|..++.+.+.......-|++..+.+++.-         +   ...+|.
T Consensus       290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRr  369 (2195)
T KOG2122|consen  290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRR  369 (2195)
T ss_pred             HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence              1111    1 11   122222   34555666666665555555567888888777651         1   246899


Q ss_pred             HHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh-hcCChHHHHHHhccc
Q 014088          162 DACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQN  239 (431)
Q Consensus       162 ~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~  239 (431)
                      ++..+|.||..++..+...++. .|++..++..|.....++......+|.||+=..+...+.++ +.|-+..|...-...
T Consensus       370 Ya~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~  449 (2195)
T KOG2122|consen  370 YAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN  449 (2195)
T ss_pred             HHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh
Confidence            9999999999877665555554 48999999999998889999999999999977776666665 557777777765444


Q ss_pred             chhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccC----CHhHHHHHHHHHHHhcCCC--CHHHHHHHHHC
Q 014088          240 YKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNA----EFEIKKEAAWAISNATSGG--SNEQIKFLVSQ  312 (431)
Q Consensus       240 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~----~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~  312 (431)
                      ..+...+..+.+|+||+.++.++...+.. .|.+..|+.+|...    ...+.+.+-.+|.|....-  ..++++.+.+.
T Consensus       450 ~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~  529 (2195)
T KOG2122|consen  450 KKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH  529 (2195)
T ss_pred             cccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh
Confidence            36677888899999999987777777665 78999999999765    4567788888888775422  34788888899


Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 014088          313 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE  392 (431)
Q Consensus       313 ~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  392 (431)
                      +++..|++.|++..--++.+++++|+||...+..+            -.+|.+.|++.-|..|.++.+..+.+-+..+|.
T Consensus       530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D------------Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALr  597 (2195)
T KOG2122|consen  530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED------------QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALR  597 (2195)
T ss_pred             hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH------------HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHH
Confidence            99999999999999899999999999999877665            456889999999999999999999999999998


Q ss_pred             HhcCCCCCCCCCCCCCCCCCCcccCCCCCCCCCC
Q 014088          393 TYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSG  426 (431)
Q Consensus       393 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (431)
                      ++....      |   +-|++..|-..|--||++
T Consensus       598 NLln~R------P---Akq~~~~~~~~g~svgsL  622 (2195)
T KOG2122|consen  598 NLLNFR------P---AKQASHRLMSPGSSVGSL  622 (2195)
T ss_pred             HHhcCC------c---hhhhhhcccCccccccch
Confidence            887654      1   125555555555555543

>PRK09687 putative lyase; Provisional

Probab=99.66  E-value=1.9e-14  Score=127.51  Aligned_cols=251  Identities=15%  Similarity=0.137  Sum_probs=195.9

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN  100 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~  100 (431)
                      |++.| .+++..+|..+++.|..+-.           ..+++.+..+++++++.+|..++++|+.+-.....      ..
T Consensus        28 L~~~L-~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~   89 (280)
T PRK09687         28 LFRLL-DDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QD   89 (280)
T ss_pred             HHHHH-hCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hH
Confidence            44455 56778999999999998764           24678888899999999999999999998643211      11


Q ss_pred             CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHH
Q 014088          101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA  180 (431)
Q Consensus       101 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  180 (431)
                      ..++.|..++.+++++.++..++.+|++++......    ....++.+...+.++++.||..++++|+.+..  +     
T Consensus        90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-----  158 (280)
T PRK09687         90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-----  158 (280)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-----
Confidence            246677777668889999999999999997543211    12356667778888899999999999976642  1     


Q ss_pred             HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH
Q 014088          181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  260 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  260 (431)
                          ..++.|+.++.++++.++..++.+|+.+...++         ..++.|+..+.+. +..||..|+++|+.+-.  +
T Consensus       159 ----~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~--~  222 (280)
T PRK09687        159 ----AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRKD--K  222 (280)
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccCC--h
Confidence                356889999999999999999999999943333         3467799999988 99999999999998632  2


Q ss_pred             HHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHH
Q 014088          261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLEN  339 (431)
Q Consensus       261 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~  339 (431)
                               .+++.|++.+.+++  ++..++.+|+++-..            ..++.|.++++ .+|..++..+.++|..
T Consensus       223 ---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~------------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        223 ---------RVLSVLIKELKKGT--VGDLIIEAAGELGDK------------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             ---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH------------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence                     37889999998876  677899999998542            25888888886 7799999999888753

>PRK09687 putative lyase; Provisional

Probab=99.65  E-value=4.2e-14  Score=125.31  Aligned_cols=255  Identities=16%  Similarity=0.128  Sum_probs=196.5

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  138 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  138 (431)
                      --++.|..+|.+++..+|..++++|..+-.  +         ..++.+..++ .++++.+|..++++|+.+-.....   
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--~---------~~~~~l~~ll-~~~d~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG--Q---------DVFRLAIELC-SSKNPIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--c---------hHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCccc---
Confidence            357889999999999999999999998742  1         1355666766 788999999999999998654211   


Q ss_pred             hhHhhhHHHHHHh-hcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088          139 EQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  217 (431)
Q Consensus       139 ~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  217 (431)
                        ....++.|..+ ++++++.|+..++.+|+++.......     ...+++.+...+.++++.||..++++|+.+..  +
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H
Confidence              23577888777 67889999999999999986543211     11345667778888899999999999987642  1


Q ss_pred             hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                               ..++.|+.++.++ ++.+|..|+++|+++...++.         .++.|+..+.+.+..||..|+++|+.+
T Consensus       159 ---------~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        159 ---------AAIPLLINLLKDP-NGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     3578899999988 999999999999999544443         567789999999999999999999986


Q ss_pred             cCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc
Q 014088          298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS  377 (431)
Q Consensus       298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~  377 (431)
                      -.            ..+++.|++.++.++  ++..++.+|..+-.                       ...++.|..+++
T Consensus       220 ~~------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-----------------------~~a~p~L~~l~~  262 (280)
T PRK09687        220 KD------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-----------------------KTLLPVLDTLLY  262 (280)
T ss_pred             CC------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-----------------------HhHHHHHHHHHh
Confidence            32            126888889988765  55566677665421                       124667777765


Q ss_pred             -CCCHHHHHHHHHHHHH
Q 014088          378 -HDNTEIYEKAVKILET  393 (431)
Q Consensus       378 -~~~~~v~~~a~~~l~~  393 (431)
                       +++++++..|.+.|..
T Consensus       263 ~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        263 KFDDNEIITKAIDKLKR  279 (280)
T ss_pred             hCCChhHHHHHHHHHhc
Confidence             8899999999998864

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=5.1e-13  Score=132.18  Aligned_cols=319  Identities=17%  Similarity=0.174  Sum_probs=227.0

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC---hHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTR-VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS---PKCRD   95 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~~   95 (431)
                      .++++. +|+++..|+.|+++|..+...-...-. .+-  .+.+.+.+.+.+++..+|..++++++.++...   +..+.
T Consensus       122 ~L~q~~-~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~  198 (1075)
T KOG2171|consen  122 FLFQST-KSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVD  198 (1075)
T ss_pred             HHHHHh-cCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHH
Confidence            334454 478899999999999998763222111 111  24555566666766669999999999988543   22233


Q ss_pred             HHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHh
Q 014088           96 LVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYL  170 (431)
Q Consensus        96 ~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l  170 (431)
                      .+..  .+|.++..+.   ...+.+....++.+|-.++...+..-......++...+.+.++.  +..+|..|+.++..+
T Consensus       199 ~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~  276 (1075)
T KOG2171|consen  199 KFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSL  276 (1075)
T ss_pred             HHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence            3322  5666666664   34456667788888888888766555556677777777777765  678899999888877


Q ss_pred             ccCChHHHHH---------------------------------------------HHH-----h-------CcHHHHHHh
Q 014088          171 SDGTNDKIQA---------------------------------------------VIE-----A-------GVCPRLVEL  193 (431)
Q Consensus       171 ~~~~~~~~~~---------------------------------------------~~~-----~-------~~i~~L~~l  193 (431)
                      ++..+...+.                                             .++     .       -+++.+-.+
T Consensus       277 ~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~  356 (1075)
T KOG2171|consen  277 SEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAM  356 (1075)
T ss_pred             HHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHH
Confidence            7653322221                                             000     0       123444455


Q ss_pred             cCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHH
Q 014088          194 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  273 (431)
Q Consensus       194 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  273 (431)
                      +.+.++.-|..++.+|+.++.+........++ .+++.+++.|+++ ++.||..|+.+++.++..-....+.-....+++
T Consensus       357 l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~  434 (1075)
T KOG2171|consen  357 LQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPP  434 (1075)
T ss_pred             hcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccH
Confidence            67778888999999999999998877776555 7889999999999 999999999999999986455555555666888


Q ss_pred             HHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          274 PLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK-PLCDLLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       274 ~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~-~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                      .|+..+.+. +++|+..|+.++-|+.....++.....+ .++++ .+..+++++.+.+++.++.+|..++...+.
T Consensus       435 aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~  508 (1075)
T KOG2171|consen  435 ALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE  508 (1075)
T ss_pred             HHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence            999998876 7899999999999999877655443322 23566 445566778899999999999999877654

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.64  E-value=8.5e-14  Score=120.49  Aligned_cols=239  Identities=19%  Similarity=0.205  Sum_probs=186.8

Q ss_pred             hHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh
Q 014088          140 QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  218 (431)
Q Consensus       140 ~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  218 (431)
                      ...+-++.|+.+|+. .++.+++.++.++++.+..+ .....+.+.|+++.+..++.++++.++..|++++.|++...+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            335678899999985 58999999999999987655 4556788889999999999999999999999999999886553


Q ss_pred             hhHHHhhcCChHHHHHHh-cccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          219 QTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       219 ~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                      ...  ++ ..++.+.+.. ..+.+..++..++.+|.|++.. .+. +.++. +.++.++.++..++..+|..++++|.|+
T Consensus        88 ~~~--Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   88 QEQ--IK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDY-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             HHH--HH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cch-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            332  23 2455555544 3333689999999999999875 332 33332 3799999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhhhcC--CCCCcchHHHHHHhhc-cHHHHH
Q 014088          298 TSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMG--NTGGVNLFAQAIDDAE-GLEKIE  373 (431)
Q Consensus       298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~~-~~~~l~  373 (431)
                      +.+.  ...+.++..+++..++.+++.. +.++...++..+.|+...-.+.....  .....+.....+.+.+ .-+++.
T Consensus       162 S~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~  239 (254)
T PF04826_consen  162 SENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQ  239 (254)
T ss_pred             ccCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHH
Confidence            9854  7889999999999999999865 67888899999999976555442211  1223344557777777 778899


Q ss_pred             HhhcCCCHHHHHHH
Q 014088          374 NLQSHDNTEIYEKA  387 (431)
Q Consensus       374 ~l~~~~~~~v~~~a  387 (431)
                      .|.+|++++|+.++
T Consensus       240 ~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  240 ALANHPDPEVKEQV  253 (254)
T ss_pred             HHHcCCCHHHhhhc
Confidence            99999999999864

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.61  E-value=1.9e-13  Score=118.28  Aligned_cols=196  Identities=19%  Similarity=0.189  Sum_probs=161.5

Q ss_pred             hhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014088            8 FECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA   87 (431)
Q Consensus         8 ~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~   87 (431)
                      .+.+-+..++.     +|..+.+|.+++.++.++++.+. .+..++.+.+.|+++.+..+|.++++.++..|+++|.|++
T Consensus         9 l~~~~l~~Ll~-----lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls   82 (254)
T PF04826_consen    9 LEAQELQKLLC-----LLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS   82 (254)
T ss_pred             cCHHHHHHHHH-----HHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC
Confidence            44455555555     88888899999999999999876 6899999999999999999999999999999999999998


Q ss_pred             CCChHHHHHHHHcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHH
Q 014088           88 GDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWA  166 (431)
Q Consensus        88 ~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  166 (431)
                      ...+ .+..+..  .++.+++..... -+.+++..++.+|.+|+..+.....  ....+|.++++|..++..++..++++
T Consensus        83 ~~~e-n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~--l~~~i~~ll~LL~~G~~~~k~~vLk~  157 (254)
T PF04826_consen   83 VNDE-NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHM--LANYIPDLLSLLSSGSEKTKVQVLKV  157 (254)
T ss_pred             CChh-hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhh--HHhhHHHHHHHHHcCChHHHHHHHHH
Confidence            7664 3444433  577777765443 4788999999999999877543333  35689999999999999999999999


Q ss_pred             HHHhccCChHHHHHHHHhCcHHHHHHhcCCC-CcccHHHHHHHHhHhhcC
Q 014088          167 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTG  215 (431)
Q Consensus       167 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~  215 (431)
                      |.|++.++.. .+.++..+++..++.++... +.++...++..+.|+..+
T Consensus       158 L~nLS~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  158 LVNLSENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHhccCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            9999988754 45577889999999999875 678899999999999754

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.60  E-value=7.3e-13  Score=136.88  Aligned_cols=269  Identities=15%  Similarity=0.153  Sum_probs=210.9

Q ss_pred             hhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCC
Q 014088           23 HCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  102 (431)
Q Consensus        23 ~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~  102 (431)
                      +.| .++++.+|..|+..|..+..           ...++.|...|+++++.+|..|+.+|..+....+          .
T Consensus       628 ~~L-~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~  685 (897)
T PRK13800        628 PYL-ADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------P  685 (897)
T ss_pred             HHh-cCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------c
Confidence            355 57789999999999998753           2478999999999999999999999988853221          1


Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088          103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  182 (431)
Q Consensus       103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  182 (431)
                      .+.+...| .++++.++..++.+|..+...           -...++..|.++++.+|..++.+|..+..          
T Consensus       686 ~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~----------  743 (897)
T PRK13800        686 APALRDHL-GSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDHRVRIEAVRALVSVDD----------  743 (897)
T ss_pred             hHHHHHHh-cCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCHHHHHHHHHHHhcccC----------
Confidence            24566777 678999999999999887532           12356788999999999999999987521          


Q ss_pred             HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH
Q 014088          183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ  262 (431)
Q Consensus       183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  262 (431)
                          .+.|...+.++++.||..++.+|+.+.....         ..++.|..+++++ ++.+|..|+.+|+++... +. 
T Consensus       744 ----~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~-~~-  807 (897)
T PRK13800        744 ----VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAELGCP-PD-  807 (897)
T ss_pred             ----cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCc-ch-
Confidence                1345678899999999999999998864322         2367888999988 899999999999998543 11 


Q ss_pred             HHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088          263 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  342 (431)
Q Consensus       263 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~  342 (431)
                              .++.+...+.++++.||..|+.+|+.+...            ..++.|..+++++++.++..+..+|..+ .
T Consensus       808 --------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~  866 (897)
T PRK13800        808 --------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAVLALTRW-P  866 (897)
T ss_pred             --------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHHHHHhcc-C
Confidence                    235688889999999999999999987431            2468899999999999999999999986 1


Q ss_pred             hhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088          343 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  393 (431)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  393 (431)
                      ..                     ....+.|...+++++++|+..|..+|+.
T Consensus       867 ~~---------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        867 GD---------------------PAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             CC---------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            11                     1124557788889999999999998863

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=6.1e-12  Score=113.28  Aligned_cols=320  Identities=15%  Similarity=0.152  Sum_probs=245.4

Q ss_pred             hhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088            9 ECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG   88 (431)
Q Consensus         9 ~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   88 (431)
                      +.|++..+++      |..+.+++++..++..+.|++. ....|..+++.|.+|.+..+|.+...  ...|+..+..++.
T Consensus       343 ~~~iveKL~k------lfp~~h~dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~  413 (791)
T KOG1222|consen  343 QNGIVEKLLK------LFPIQHPDLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSC  413 (791)
T ss_pred             hccHHHHHHH------hcCCCCHHHHHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhcc
Confidence            5678888888      7778899999999999999998 56788999999999999999976432  2346677788876


Q ss_pred             CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHh-hcCCChHHHHHHHHHH
Q 014088           89 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL-IHSNDDEVLTDACWAL  167 (431)
Q Consensus        89 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L  167 (431)
                      +.. .+..+....+++.+++.+....+.++-........|+|.+....+.......+..|.+. +++.++-+    ...+
T Consensus       414 dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~v  488 (791)
T KOG1222|consen  414 DDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVV  488 (791)
T ss_pred             CcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHH
Confidence            553 57788888899999988877778888777788888999887666666666777777654 55566543    3467


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc-hhhHH
Q 014088          168 SYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIK  245 (431)
Q Consensus       168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~  245 (431)
                      .|++.+.......+++  .+..|...+.. ++.+....++++++|+....-...+.+-+.+++|.+-..|.... ..++.
T Consensus       489 RniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLv  566 (791)
T KOG1222|consen  489 RNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLV  566 (791)
T ss_pred             HHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhh
Confidence            8888887655555554  45667777655 45667888999999998765556666778899999999887552 35677


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHH-HCCChHHHHhhc
Q 014088          246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLL  322 (431)
Q Consensus       246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll  322 (431)
                      ....-+++.+++. ......+...++++.++++|+..  +.+.....+.++..+..+.  ..+..+. +...-..+++++
T Consensus       567 L~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLM  643 (791)
T KOG1222|consen  567 LQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLM  643 (791)
T ss_pred             hHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHH
Confidence            7777788888775 45556666789999999999864  7788888889998888763  3444444 456777899999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088          323 NCPDPRIVTVCLEGLENILKAGEAE  347 (431)
Q Consensus       323 ~~~~~~v~~~al~~L~~l~~~~~~~  347 (431)
                      +.++.++++.+-.+|--+...+...
T Consensus       644 HDkN~eiRkVCDn~LdIiae~d~EW  668 (791)
T KOG1222|consen  644 HDKNAEIRKVCDNALDIIAEHDKEW  668 (791)
T ss_pred             hcccHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999989988888776654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=1.7e-11  Score=121.60  Aligned_cols=318  Identities=20%  Similarity=0.227  Sum_probs=221.9

Q ss_pred             HHHHhhhccCCChHHHHHHHHHHHHHcCCC---hHhHHHHHhCCChHHHHHhhC----CCCHHHHHHHHHHHHHhcCCCh
Q 014088           19 QFFFHCFFSCCFGAVQFEAAWALTNIASGT---SENTRVVIDHGAVPIFVRLLS----SPTDDVREQAVWALGNVAGDSP   91 (431)
Q Consensus        19 ~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~   91 (431)
                      +.|.+++.+.+++ +|..|+++++..+...   ....+.+.  ..+|.++..+.    .++......++.+|..++...+
T Consensus       162 ~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p  238 (1075)
T KOG2171|consen  162 RLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP  238 (1075)
T ss_pred             HHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch
Confidence            3566788877776 9999999999887644   33344444  46776666654    4667777888888888886655


Q ss_pred             HH-HHHHHHcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCC---------------------------------
Q 014088           92 KC-RDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQP---------------------------------  136 (431)
Q Consensus        92 ~~-~~~i~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~---------------------------------  136 (431)
                      .. +..+.+  ++...+.+.. ++-++.+|..|+.+|..+++.-|..                                 
T Consensus       239 k~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~  316 (1075)
T KOG2171|consen  239 KLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDD  316 (1075)
T ss_pred             HHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccc
Confidence            43 222222  3333333332 2235667777777666665541100                                 


Q ss_pred             -------------------------ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 014088          137 -------------------------LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  191 (431)
Q Consensus       137 -------------------------~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  191 (431)
                                               .......+++.+-.++.+.+..-|..++.+|+.++.+..+.+..... .+++.++
T Consensus       317 ~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl  395 (1075)
T KOG2171|consen  317 LDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVL  395 (1075)
T ss_pred             cccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHH
Confidence                                     00111223344455667788888999999999999998877664443 6788888


Q ss_pred             HhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC-HHHHHHHHHhC
Q 014088          192 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAG  270 (431)
Q Consensus       192 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~  270 (431)
                      +.|.++.+.||..|+.+++.++..-....+......+++.|+..+.+..+++++..|+.++-|++... .+.....++ +
T Consensus       396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~  474 (1075)
T KOG2171|consen  396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-G  474 (1075)
T ss_pred             hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-H
Confidence            89999999999999999999998766666667777888999999998878899999999999999843 344454444 3


Q ss_pred             CHH-HHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC----HHHHHHHHHHHHHHHHhhh
Q 014088          271 IIG-PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----PRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       271 ~i~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----~~v~~~al~~L~~l~~~~~  345 (431)
                      ++. .+..+++++.+.+++.++.+|+..+........+++..  +++.|...+...+    ..++-++++++.-+...-.
T Consensus       475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVG  552 (1075)
T KOG2171|consen  475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVG  552 (1075)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhh
Confidence            666 44445566799999999999999998776666666555  7888888887543    3566666677666554433

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.53  E-value=2.8e-11  Score=111.69  Aligned_cols=322  Identities=14%  Similarity=0.173  Sum_probs=233.7

Q ss_pred             CChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHH-----cCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 014088           59 GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLS-----NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  132 (431)
Q Consensus        59 g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-----~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  132 (431)
                      ..+..++.+++. ..+++.+.++..+.-+....+.....+.+     .....+++.+| ..+|.-+...++.+|..+...
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence            567788888876 67888999999999998877665455554     35677888888 667888999999999999876


Q ss_pred             CCCCChh-hHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CcccHHHHHHH
Q 014088          133 KPQPLFE-QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT  208 (431)
Q Consensus       133 ~~~~~~~-~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~  208 (431)
                      .+..... ....+++.+...++++ +...+..++.++..+...++-+ ..+.+.++++.|+.+|+..  .......++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            5332221 2233555666777654 4677788889999998887644 5577778999999999763  45778889999


Q ss_pred             HhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC------HHHHHHHHHhCCHHHHHHHHccC
Q 014088          209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------VNQIQAIIEAGIIGPLVNLLLNA  282 (431)
Q Consensus       209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~i~~L~~ll~~~  282 (431)
                      ++-++...+ ........++++.++++++....+++.+-++.++.|+...+      ......+++.|+.+.+-.+-..+
T Consensus       211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk  289 (429)
T cd00256         211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK  289 (429)
T ss_pred             HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence            999998655 44455677999999999998878999999999999999742      23445667776655444444333


Q ss_pred             --CHhHHHHH-------HHHHHHhcC------------------CCC----HHHHHHHHHCC--ChHHHHhhcC-CCCHH
Q 014088          283 --EFEIKKEA-------AWAISNATS------------------GGS----NEQIKFLVSQG--CIKPLCDLLN-CPDPR  328 (431)
Q Consensus       283 --~~~v~~~a-------~~aL~~l~~------------------~~~----~~~~~~l~~~~--~l~~L~~ll~-~~~~~  328 (431)
                        |+++....       -..+..++.                  +.+    .++...|.+.+  ++..|..+++ +.|+.
T Consensus       290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~  369 (429)
T cd00256         290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI  369 (429)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence              55543221       111111111                  101    24556666554  4788899884 56788


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088          329 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       329 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  395 (431)
                      +...|+.=++.+++..+.            .+..+.+.|+.+++.+|++|+|++|+..|..+++.+.
T Consensus       370 ~laVAc~Dige~vr~~P~------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         370 ILAVACHDIGEYVRHYPR------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             eeehhhhhHHHHHHHCcc------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            888899999999987644            3677889999999999999999999999999988764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.53  E-value=7e-12  Score=117.14  Aligned_cols=372  Identities=15%  Similarity=0.099  Sum_probs=251.1

Q ss_pred             hhhhhhhhhhhHHHHHhhhccCC--ChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHH
Q 014088            7 RFECILISLFVDQFFFHCFFSCC--FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWAL   83 (431)
Q Consensus         7 ~~~~g~~~~~v~~~lv~~L~~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L   83 (431)
                      .++.|.+|.+.-      |.+.+  .++.+.+...++.....+.......+.+.+.++.++++|.+++ ..+++.+++++
T Consensus        47 ~ik~GAv~~Ll~------L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~l  120 (678)
T KOG1293|consen   47 NIKLGAVELLLA------LLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCL  120 (678)
T ss_pred             hhhhcchHHHHh------hccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHH
Confidence            567888888888      54443  3567767777777787777888889999999999999999988 89999999999


Q ss_pred             HHhcCCChH--HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHH
Q 014088           84 GNVAGDSPK--CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT  161 (431)
Q Consensus        84 ~~l~~~~~~--~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~  161 (431)
                      .++....+.  .........+++.+..++ ..+.....+.-+....+++............+....+.-++...+...|.
T Consensus       121 R~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~Rl  199 (678)
T KOG1293|consen  121 RTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRL  199 (678)
T ss_pred             HHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHH
Confidence            999865432  111122222344444444 32444455555666666666543333334467777777777777889999


Q ss_pred             HHHHHHH---HhccCChHHHH----HHHHhCcHH--HHHHhcCCCCcccHHHHHHHHhHhhcCChh--------------
Q 014088          162 DACWALS---YLSDGTNDKIQ----AVIEAGVCP--RLVELLRHPSPSVLIPALRTVGNIVTGDDM--------------  218 (431)
Q Consensus       162 ~a~~~L~---~l~~~~~~~~~----~~~~~~~i~--~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~--------------  218 (431)
                      .|+.+++   ++..+++....    .+.+.|+.+  .+.+++++++.+.+..++.++.++...+..              
T Consensus       200 aaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmg  279 (678)
T KOG1293|consen  200 AALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMG  279 (678)
T ss_pred             HHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCc
Confidence            9999999   77766654332    234446655  345566666666666666666666543300              


Q ss_pred             -------------------------------------hhHHHhhcCChHHHHHHhc------------------------
Q 014088          219 -------------------------------------QTQCIINHQALPCLLDLLT------------------------  237 (431)
Q Consensus       219 -------------------------------------~~~~~~~~~~l~~L~~lL~------------------------  237 (431)
                                                           ......+....+.+.+++.                        
T Consensus       280 d~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~  359 (678)
T KOG1293|consen  280 DSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILN  359 (678)
T ss_pred             hHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhh
Confidence                                                 0000011111222222221                        


Q ss_pred             ----------------------------ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHH
Q 014088          238 ----------------------------QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  289 (431)
Q Consensus       238 ----------------------------~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  289 (431)
                                                  .. +...+..|+.++-++++.-......+-..++..+|++++..++..|+..
T Consensus       360 ~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~  438 (678)
T KOG1293|consen  360 HLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGI  438 (678)
T ss_pred             hhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHH
Confidence                                        11 4455566666666665532222223334668999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccH
Q 014088          290 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL  369 (431)
Q Consensus       290 a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  369 (431)
                      ++.+|+|+...-+ .....++..|+++.+.+++..+++.++..++|+|++++-.++...+          ...+. .=+.
T Consensus       439 ~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k----------~~~~~-ki~a  506 (678)
T KOG1293|consen  439 TLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK----------FQLLA-KIPA  506 (678)
T ss_pred             HHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH----------HHHHH-HhhH
Confidence            9999999987654 5677889999999999999999999999999999999987766543          11222 2235


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 014088          370 EKIENLQSHDNTEIYEKAVKILETYWVEE  398 (431)
Q Consensus       370 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~e  398 (431)
                      ..|..+.+++++.|++.+-.++.++..+-
T Consensus       507 ~~i~~l~nd~d~~Vqeq~fqllRNl~c~~  535 (678)
T KOG1293|consen  507 NLILDLINDPDWAVQEQCFQLLRNLTCNS  535 (678)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence            66888899999999999999999887763

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=5.4e-13  Score=124.21  Aligned_cols=311  Identities=18%  Similarity=0.211  Sum_probs=219.7

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcC----ChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG----ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  134 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~----~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  134 (431)
                      .++|.|+++|.+++....+.|..+|..+|.+++..-+.-....    .++.+++.. +++++.+|..|+.++-.+.-..+
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence            4789999999999999999999999999998765432211112    356677777 77899999999999988877655


Q ss_pred             CCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088          135 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  214 (431)
Q Consensus       135 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  214 (431)
                      ..-+.....++..+..+-++.+++||+..|.++..+....+++...-. .++++.++...++.+.+|...|+.....++.
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            555666788899999999999999999999999999987776543222 2788888888899999999999999999987


Q ss_pred             CChhhhHHHh--hcCChHHHHHHhcccc----------------------------------------------------
Q 014088          215 GDDMQTQCII--NHQALPCLLDLLTQNY----------------------------------------------------  240 (431)
Q Consensus       215 ~~~~~~~~~~--~~~~l~~L~~lL~~~~----------------------------------------------------  240 (431)
                      ... ....+.  -.+++|.|++-|..+.                                                    
T Consensus       286 qpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD  364 (885)
T KOG2023|consen  286 QPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD  364 (885)
T ss_pred             CcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence            652 111111  1245666665442210                                                    


Q ss_pred             ---hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCC----HHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 014088          241 ---KKSIKKEACWTISNITAGNVNQIQAIIEAGI----IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG  313 (431)
Q Consensus       241 ---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  313 (431)
                         +..+|+..+.+|.-++        .+....+    +|.|-+.|.++.+.+|+.++.+++.++.++.......+-+  
T Consensus       365 ~~~dWNLRkCSAAaLDVLa--------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe--  434 (885)
T KOG2023|consen  365 AFSDWNLRKCSAAALDVLA--------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE--  434 (885)
T ss_pred             ccccccHhhccHHHHHHHH--------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH--
Confidence               0233443333333333        2233333    4555555666789999999999999998765444444433  


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  393 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  393 (431)
                      +++.|++++.++.+-++..++|+|.+....--+...      ...|...+.      -|..-.-+.|..|+++|..+..+
T Consensus       435 Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~------~~~f~pvL~------~ll~~llD~NK~VQEAAcsAfAt  502 (885)
T KOG2023|consen  435 LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR------DEYFKPVLE------GLLRRLLDSNKKVQEAACSAFAT  502 (885)
T ss_pred             HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh------HhhhHHHHH------HHHHHHhcccHHHHHHHHHHHHH
Confidence            789999999999999999999999998765443321      111222222      23333457889999999988886


Q ss_pred             h
Q 014088          394 Y  394 (431)
Q Consensus       394 ~  394 (431)
                      +
T Consensus       503 l  503 (885)
T KOG2023|consen  503 L  503 (885)
T ss_pred             H
Confidence            5

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.50  E-value=1e-11  Score=110.44  Aligned_cols=371  Identities=13%  Similarity=0.071  Sum_probs=261.2

Q ss_pred             hhhhhhhhhhhhHHHHHhhhccCCCh---HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHH
Q 014088            6 LRFECILISLFVDQFFFHCFFSCCFG---AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAV   80 (431)
Q Consensus         6 ~~~~~g~~~~~v~~~lv~~L~~s~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~   80 (431)
                      ..++-|+-...++  +++-+-+-++|   +...-+...|.|..-++.+.+.++++.|+++.|...+.-  .+....+...
T Consensus       124 a~~~lgGaqivid--~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll  201 (604)
T KOG4500|consen  124 AFFNLGGAQIVID--VLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLL  201 (604)
T ss_pred             HHHhcCCceehHh--hhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHH
Confidence            3455566666666  22222222222   555566678999999999999999999999999988754  5666666666


Q ss_pred             HHHHHhcCCChH-HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC-CC--
Q 014088           81 WALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-ND--  156 (431)
Q Consensus        81 ~~L~~l~~~~~~-~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~-~~--  156 (431)
                      ....|+.+-..+ ..+...+......+++++.....+++++.+..++...+.++.........|.+..+..+++. ++  
T Consensus       202 ~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t  281 (604)
T KOG4500|consen  202 APFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFT  281 (604)
T ss_pred             hccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhccccc
Confidence            666666543222 23455566667788888877778899999999999999987666666667888888888875 21  


Q ss_pred             -----hHHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChH
Q 014088          157 -----DEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP  230 (431)
Q Consensus       157 -----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~  230 (431)
                           -.....++....-+..+++ ..+.+...+ +++.+...+.+++........-+++|+++..+ ....+++.+++.
T Consensus       282 ~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~n  359 (604)
T KOG4500|consen  282 KKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLN  359 (604)
T ss_pred             chHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHH
Confidence                 1233444544455555554 445566655 89999999999999999999999999999766 445677889999


Q ss_pred             HHHHHhccc----chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHH
Q 014088          231 CLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  306 (431)
Q Consensus       231 ~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  306 (431)
                      .|+.++...    .+-+++..++.+|.|+... ..++..++..|+.+.++.+++...+.+...-..++.-+....+.-..
T Consensus       360 kL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~  438 (604)
T KOG4500|consen  360 KLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIAC  438 (604)
T ss_pred             HHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHH
Confidence            999988542    1567788899999999985 34467888999999999999999999999888888866554321222


Q ss_pred             HHHHHCCChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHH
Q 014088          307 KFLVSQGCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYE  385 (431)
Q Consensus       307 ~~l~~~~~l~~L~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~  385 (431)
                      ........++.|+.--+++|.. +.-...+.+.-++++.....          +.-.+.+.|+++....+....+-..+.
T Consensus       439 eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd----------v~~tvpksg~ik~~Vsm~t~~hi~mqn  508 (604)
T KOG4500|consen  439 ELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD----------VILTVPKSGGIKEKVSMFTKNHINMQN  508 (604)
T ss_pred             HHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh----------hHhhccccccHHHHHHHHHHhhHHHhH
Confidence            2222334566677666666643 66667777777777643322          345577788888888887777666666


Q ss_pred             HHHHHH
Q 014088          386 KAVKIL  391 (431)
Q Consensus       386 ~a~~~l  391 (431)
                      .|.-++
T Consensus       509 EalVal  514 (604)
T KOG4500|consen  509 EALVAL  514 (604)
T ss_pred             HHHHHH
Confidence            665444

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.48  E-value=1.3e-12  Score=101.61  Aligned_cols=118  Identities=31%  Similarity=0.515  Sum_probs=107.1

Q ss_pred             hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088            7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV   86 (431)
Q Consensus         7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l   86 (431)
                      ..+.|++|.+++      +..++++.++..++++|.+++..+++.+..+.+.|+++.++++|.++++.++..++++|+++
T Consensus         3 ~~~~~~i~~l~~------~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l   76 (120)
T cd00020           3 VIQAGGLPALVS------LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNL   76 (120)
T ss_pred             HHHcCChHHHHH------HHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            467889999999      44466689999999999999998899999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 014088           87 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  131 (431)
Q Consensus        87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  131 (431)
                      +...+..+..+...|.++.+++.+ .+.+.++++.++|+|.+++.
T Consensus        77 ~~~~~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          77 AAGPEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             ccCcHHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            998877788888999999999999 66689999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.45  E-value=2.4e-12  Score=100.18  Aligned_cols=118  Identities=34%  Similarity=0.507  Sum_probs=109.8

Q ss_pred             HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH
Q 014088          181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  260 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  260 (431)
                      +++.|+++.++.++.++++.++..+++++++++...+.....+++.++++.+.+++.++ ++.++..++|+|+|++...+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56779999999999999999999999999999998787888888899999999999998 99999999999999999877


Q ss_pred             HHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       261 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      .....+.+.|+++.+++++...+.++++.++++|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            878888899999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.44  E-value=1.7e-10  Score=114.00  Aligned_cols=318  Identities=18%  Similarity=0.211  Sum_probs=226.2

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN  100 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~  100 (431)
                      +++++. +++...+.-+-..+..+...+++..-.     ++..+.+=|.++++.++..|++++++++  .++....    
T Consensus        47 vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~----  114 (526)
T PF01602_consen   47 VIKLIS-SKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP----  114 (526)
T ss_dssp             HHCTCS-SSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH----
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH----
Confidence            334454 788899999988899988866663222     5678888889999999999999999997  3333333    


Q ss_pred             CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHH
Q 014088          101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA  180 (431)
Q Consensus       101 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  180 (431)
                       .++.+.+++ .++++.+|+.|+.++..+.+..|..  .... +++.+.+++.++++.++..|+.++..+ ..++.....
T Consensus       115 -l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~--~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~  188 (526)
T PF01602_consen  115 -LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDL--VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKS  188 (526)
T ss_dssp             -HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCC--HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTT
T ss_pred             -HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHH--HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhh
Confidence             466778888 7889999999999999999874332  2222 799999999999999999999999999 333322111


Q ss_pred             HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH
Q 014088          181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  260 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  260 (431)
                      +. ...+..+.+++...++-.+..+++++..++...+.....   ..+++.+..++++. ++.+..+++.++..+... +
T Consensus       189 ~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~  262 (526)
T PF01602_consen  189 LI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-P  262 (526)
T ss_dssp             HH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-H
T ss_pred             hH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-h
Confidence            11 144566666677888889999999999998766544421   35678888888888 999999999999988765 3


Q ss_pred             HHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHH
Q 014088          261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLEN  339 (431)
Q Consensus       261 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~  339 (431)
                      .     .-..+++.|..++.++++.++..++..|..++... +.   . +.  ........+. +++..++..++.+|..
T Consensus       263 ~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~---~-v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~  330 (526)
T PF01602_consen  263 E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PP---A-VF--NQSLILFFLLYDDDPSIRKKALDLLYK  330 (526)
T ss_dssp             H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HH---H-HG--THHHHHHHHHCSSSHHHHHHHHHHHHH
T ss_pred             H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-ch---h-hh--hhhhhhheecCCCChhHHHHHHHHHhh
Confidence            3     22246788999999889999999999999998765 11   1 12  2233333444 7889999999999999


Q ss_pred             HHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHH
Q 014088          340 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILET  393 (431)
Q Consensus       340 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~  393 (431)
                      ++.....             ..      .++.|.... +.++++++..+...+..
T Consensus       331 l~~~~n~-------------~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~  366 (526)
T PF01602_consen  331 LANESNV-------------KE------ILDELLKYLSELSDPDFRRELIKAIGD  366 (526)
T ss_dssp             H--HHHH-------------HH------HHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred             cccccch-------------hh------HHHHHHHHHHhccchhhhhhHHHHHHH
Confidence            8865432             22      123334444 45566676666555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.41  E-value=8e-11  Score=121.90  Aligned_cols=246  Identities=17%  Similarity=0.169  Sum_probs=195.7

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 014088           58 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL  137 (431)
Q Consensus        58 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  137 (431)
                      ...++.|+..|+++++.+|..|+..|+.+..           ...++.|...| .++++.++..|+.+|..+....+   
T Consensus       620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccC---
Confidence            4578899999999999999999999998742           12577888888 88899999999999988854321   


Q ss_pred             hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088          138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  217 (431)
Q Consensus       138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  217 (431)
                            ..+.+...|.++++.+|..++.+|..+....            ...++..|.++++.+|..++.+|+.+-.   
T Consensus       685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~---  743 (897)
T PRK13800        685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD---  743 (897)
T ss_pred             ------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC---
Confidence                  2356778888999999999999998865322            2346678899999999999999987521   


Q ss_pred             hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                                 .+.|...+.++ +..||..++.+|+.+.....         ..++.|..++.++++.||..|+.+|+.+
T Consensus       744 -----------~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 -----------VESVAGAATDE-NREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             -----------cHHHHHHhcCC-CHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                       24467788888 99999999999999865422         2367788999999999999999999998


Q ss_pred             cCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc
Q 014088          298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS  377 (431)
Q Consensus       298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~  377 (431)
                      ....           .....+...++++++.++..++++|..+-.                       ...++.|..++.
T Consensus       803 g~~~-----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------------------~~a~~~L~~~L~  848 (897)
T PRK13800        803 GCPP-----------DDVAAATAALRASAWQVRQGAARALAGAAA-----------------------DVAVPALVEALT  848 (897)
T ss_pred             CCcc-----------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------------------cchHHHHHHHhc
Confidence            5421           123567788888999999999999986421                       113466888899


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 014088          378 HDNTEIYEKAVKILETY  394 (431)
Q Consensus       378 ~~~~~v~~~a~~~l~~~  394 (431)
                      ++++.||..|...|..+
T Consensus       849 D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        849 DPHLDVRKAAVLALTRW  865 (897)
T ss_pred             CCCHHHHHHHHHHHhcc
Confidence            99999999999999986

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.38  E-value=7.7e-11  Score=116.40  Aligned_cols=325  Identities=21%  Similarity=0.228  Sum_probs=235.4

Q ss_pred             HHhhhccC-CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088           21 FFHCFFSC-CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS   99 (431)
Q Consensus        21 lv~~L~~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   99 (431)
                      +.+.+.+. .++.-+..++.-|..+.....+..      .+.+.+++++.+.+...++-+...+..+...+++..  +. 
T Consensus         9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~--~l-   79 (526)
T PF01602_consen    9 LAKILNSFKIDISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL--IL-   79 (526)
T ss_dssp             HHHHHHCSSTHHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH--HH-
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH--HH-
Confidence            33455433 245556666655554433222222      578899999999999999999999999998877632  22 


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088          100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ  179 (431)
Q Consensus       100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  179 (431)
                        ++..+.+-+ .++++.++..|+.++++++..      .....+++.+.+++.++++.||+.|+.++..+....++...
T Consensus        80 --~~n~l~kdl-~~~n~~~~~lAL~~l~~i~~~------~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~  150 (526)
T PF01602_consen   80 --IINSLQKDL-NSPNPYIRGLALRTLSNIRTP------EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE  150 (526)
T ss_dssp             --HHHHHHHHH-CSSSHHHHHHHHHHHHHH-SH------HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH
T ss_pred             --HHHHHHHhh-cCCCHHHHHHHHhhhhhhccc------chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH
Confidence              467777878 788999999999999999733      45567889999999999999999999999999877665433


Q ss_pred             HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC
Q 014088          180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  259 (431)
Q Consensus       180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  259 (431)
                         .. +++.+..++.+.++.++..|+.++..+ ..++.....++ ...+..|.+++... ++-.+..++.++..++...
T Consensus       151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~  223 (526)
T PF01602_consen  151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDP-DPWLQIKILRLLRRYAPME  223 (526)
T ss_dssp             ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSS
T ss_pred             ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhccccc-chHHHHHHHHHHHhcccCC
Confidence               22 689999999999999999999999999 33332211111 13455566666667 8999999999999998865


Q ss_pred             HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 014088          260 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN  339 (431)
Q Consensus       260 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~  339 (431)
                      +.....   ..+++.+..++.+.++.|..+++.++..+....  .     .-..+++.|..++.++++.++..++..|..
T Consensus       224 ~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~--~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~  293 (526)
T PF01602_consen  224 PEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP--E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQ  293 (526)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH--H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred             hhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch--H-----HHHhhHHHHHHHhhcccchhehhHHHHHHH
Confidence            655422   346778888888889999999999999887643  2     222368899999999999999999999999


Q ss_pred             HHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088          340 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       340 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  397 (431)
                      +......               .+.  ...-.+.-+..+++..++..+..++..+.+.
T Consensus       294 l~~~~~~---------------~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~  334 (526)
T PF01602_consen  294 LAQSNPP---------------AVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANE  334 (526)
T ss_dssp             HCCHCHH---------------HHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred             hhcccch---------------hhh--hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence            8876511               111  1111233445688899999999998877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.37  E-value=8e-11  Score=110.20  Aligned_cols=327  Identities=14%  Similarity=0.074  Sum_probs=212.9

Q ss_pred             hHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHH--HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH
Q 014088           17 VDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTR--VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR   94 (431)
Q Consensus        17 v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   94 (431)
                      +-+.+.++|.+++...++..+++++..+...++..-.  ......+++.+..++..+...+...-+....++++.. ..+
T Consensus        96 ~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq  174 (678)
T KOG1293|consen   96 ELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQ  174 (678)
T ss_pred             hHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhh
Confidence            3344455776555478999999999999875533322  2233356666666665344444444444445555443 445


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHH---HhhcCCCCCChhhH-----hhhHH--HHHHhhcCCChHHHHHHH
Q 014088           95 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS---NFCRGKPQPLFEQT-----RPALP--ALERLIHSNDDEVLTDAC  164 (431)
Q Consensus        95 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~-----~~~i~--~L~~lL~~~~~~v~~~a~  164 (431)
                      ......+..+.+.-++ ...+...|..|..+++   ++..+++...+...     .++.+  .+.+++++++...+..++
T Consensus       175 ~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl  253 (678)
T KOG1293|consen  175 LILCNAGILEKINILL-MYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSL  253 (678)
T ss_pred             heeccccchhhHHHHH-HhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHH
Confidence            5666666666555555 5556788888888888   67666644433322     34444  445566666666666666


Q ss_pred             HHHHHhccCCh----------------HHHHH-----------------------------------HHHhCcHHHHHHh
Q 014088          165 WALSYLSDGTN----------------DKIQA-----------------------------------VIEAGVCPRLVEL  193 (431)
Q Consensus       165 ~~L~~l~~~~~----------------~~~~~-----------------------------------~~~~~~i~~L~~l  193 (431)
                      .++.++.....                ..+-.                                   .++....+...++
T Consensus       254 ~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~el  333 (678)
T KOG1293|consen  254 ECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTEL  333 (678)
T ss_pred             HHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHH
Confidence            66655543210                00000                                   0000011111111


Q ss_pred             ----------------------------------------------------cCCCCcccHHHHHHHHhHhhcCChhhhH
Q 014088          194 ----------------------------------------------------LRHPSPSVLIPALRTVGNIVTGDDMQTQ  221 (431)
Q Consensus       194 ----------------------------------------------------l~~~~~~v~~~a~~~l~~l~~~~~~~~~  221 (431)
                                                                          ....+...+..++-++.+++..-...+.
T Consensus       334 lf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~t  413 (678)
T KOG1293|consen  334 LFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRT  413 (678)
T ss_pred             HHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHc
Confidence                                                                1123444566666666666554332333


Q ss_pred             HHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088          222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       222 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      .+-...+...+++++..+ +..+...+..+++|+..........++..|++..+.+++.+.++.++..+.|+|.++..++
T Consensus       414 g~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~  492 (678)
T KOG1293|consen  414 GLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC  492 (678)
T ss_pred             CCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc
Confidence            333567889999999888 8999999999999999976777889999999999999999999999999999999999988


Q ss_pred             CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          302 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       302 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                      .......+...=....+..+.+.+++.+++.++..++|+....++
T Consensus       493 de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~  537 (678)
T KOG1293|consen  493 DEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK  537 (678)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence            655555555555577788888999999999999999999877443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=3.4e-10  Score=108.64  Aligned_cols=257  Identities=17%  Similarity=0.160  Sum_probs=204.3

Q ss_pred             HHhhhccCCChHHHHHHHHHHHH-HcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTN-IASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVL   98 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~   98 (431)
                      |++-|....++..|.+|+.-|+. ++.++++.-..+--..++|.|+.+|+. .+.++...|+++|.+++.--|.....++
T Consensus       172 LL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV  251 (1051)
T KOG0168|consen  172 LLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVV  251 (1051)
T ss_pred             HHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheee
Confidence            44456656578888888887775 445666665555556789999999998 5699999999999999987777778889


Q ss_pred             HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC-hHH
Q 014088           99 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT-NDK  177 (431)
Q Consensus        99 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~  177 (431)
                      +.++|+.++..|..-+-.++.++++.+|..+++..+  ......|.+...+..|.--...+++.|+.+..|+|..- ++.
T Consensus       252 ~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~  329 (1051)
T KOG0168|consen  252 DEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDE  329 (1051)
T ss_pred             cccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            999999999999777788999999999999999853  34455788888888888777889999999999999653 233


Q ss_pred             HHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC---hhhhHHHhhcCChHHHHHHhcccc---hhhHHHHHHHH
Q 014088          178 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD---DMQTQCIINHQALPCLLDLLTQNY---KKSIKKEACWT  251 (431)
Q Consensus       178 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~L~~lL~~~~---~~~v~~~a~~~  251 (431)
                      ...++  ..+|.|..+|+..+....+.++-++..++...   +...+.+...+++....+++.-..   +..+....+++
T Consensus       330 f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrm  407 (1051)
T KOG0168|consen  330 FHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRM  407 (1051)
T ss_pred             chHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHH
Confidence            34444  57899999999999999999999999998653   455666778899999999886541   23445566778


Q ss_pred             HHHhhcCCHHHHHHHHHhCCHHHHHHHHcc
Q 014088          252 ISNITAGNVNQIQAIIEAGIIGPLVNLLLN  281 (431)
Q Consensus       252 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  281 (431)
                      +.-++.+++.....+.+.++...|..++..
T Consensus       408 ls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  408 LSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             HHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            888888888888888888888888887754

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.34  E-value=1.2e-09  Score=101.10  Aligned_cols=321  Identities=12%  Similarity=0.109  Sum_probs=223.4

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhC-----CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDH-----GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR   94 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   94 (431)
                      .++.+|.....+++....+..+..+...++.....+.+.     .....++.+|..++.-+...++.+|..+....+...
T Consensus        57 ~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~  136 (429)
T cd00256          57 TFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKM  136 (429)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcccc
Confidence            455678778888999999999999998777766666653     566778889988999999999999999975433211


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhcc
Q 014088           95 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSD  172 (431)
Q Consensus        95 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~  172 (431)
                      ......-....+...+....+...+..++.+|..|.+..+.+......++++.|..+|+..  +..++..++.++.-++-
T Consensus       137 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF  216 (429)
T cd00256         137 EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTF  216 (429)
T ss_pred             chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence            1110001223445555333456778888999999999876665555567899999999853  56889999999998887


Q ss_pred             CChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCCh------hhhHHHhhcCChHHHHHHhcccc-hhhH
Q 014088          173 GTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDD------MQTQCIINHQALPCLLDLLTQNY-KKSI  244 (431)
Q Consensus       173 ~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v  244 (431)
                      +.+ ........++++.++++++. ...++.+-++.++.|+...+.      .....++..++++.+-.+..... ++++
T Consensus       217 ~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL  295 (429)
T cd00256         217 NPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDL  295 (429)
T ss_pred             cHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHH
Confidence            765 44556667999999999976 578899999999999987531      23334556666555544443322 3333


Q ss_pred             HHHHHHHH-------HHhhcCCHHHHH------------------------HHHHhC--CHHHHHHHHcc-CCHhHHHHH
Q 014088          245 KKEACWTI-------SNITAGNVNQIQ------------------------AIIEAG--IIGPLVNLLLN-AEFEIKKEA  290 (431)
Q Consensus       245 ~~~a~~~L-------~nl~~~~~~~~~------------------------~l~~~~--~i~~L~~ll~~-~~~~v~~~a  290 (431)
                      ....-..-       ..++. -+++..                        .+-+.+  ++..|+++|.. .++.+..-|
T Consensus       296 ~edl~~L~e~L~~~~k~lts-fD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVA  374 (429)
T cd00256         296 TDDLKFLTEELKNSVQDLSS-FDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVA  374 (429)
T ss_pred             HHHHHHHHHHHHHHHHHcCC-HHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehh
Confidence            32211111       11110 112222                        222222  47888999854 477788889


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088          291 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       291 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~  343 (431)
                      |.=++.++... |..+..+.+.|+=..+++++.++|++++..|+.++..++-.
T Consensus       375 c~Dige~vr~~-P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~  426 (429)
T cd00256         375 CHDIGEYVRHY-PRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH  426 (429)
T ss_pred             hhhHHHHHHHC-ccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            99999999876 35666666789999999999999999999999999998754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=1.5e-08  Score=96.97  Aligned_cols=325  Identities=15%  Similarity=0.180  Sum_probs=237.9

Q ss_pred             hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCC
Q 014088           12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD   89 (431)
Q Consensus        12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~   89 (431)
                      .|+.+++     .+.++.-.+-|+.|++.|..++.   ..|..+...| ++.+++.|+.  .++++...++.++.++...
T Consensus        23 TI~kLcD-----RvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~   93 (970)
T KOG0946|consen   23 TIEKLCD-----RVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSH   93 (970)
T ss_pred             HHHHHHH-----HHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence            3455555     66666667899999999999986   6677776655 8999999886  6799999999999999754


Q ss_pred             Ch------HH-----------HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--h-HhhhHHHHH
Q 014088           90 SP------KC-----------RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--Q-TRPALPALE  149 (431)
Q Consensus        90 ~~------~~-----------~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~-~~~~i~~L~  149 (431)
                      ..      ..           -..+...+.+..++..+ ...|-.+|.++...+.++....|.....  . ...++..++
T Consensus        94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm  172 (970)
T KOG0946|consen   94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM  172 (970)
T ss_pred             CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence            41      00           12344566788888888 7778999999999999999887443222  2 256899999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC---Cc-ccHHHHHHHHhHhhcCChhhhHHHhh
Q 014088          150 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP---SP-SVLIPALRTVGNIVTGDDMQTQCIIN  225 (431)
Q Consensus       150 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~-~v~~~a~~~l~~l~~~~~~~~~~~~~  225 (431)
                      .+|.+....+|..++..|..++.+++.-.+.+.-.+++..|..++...   +. -|...|+..+.|+...+..+...+.+
T Consensus       173 dlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE  252 (970)
T KOG0946|consen  173 DLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE  252 (970)
T ss_pred             HHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence            999999999999999999999998876655555568999999999763   33 56777999999999999888888899


Q ss_pred             cCChHHHHHHhcccc--h------h----hHHHHHHHHHHHhhc-CCH-----HHHHHHHHhCCHHHHHHHHccC--CHh
Q 014088          226 HQALPCLLDLLTQNY--K------K----SIKKEACWTISNITA-GNV-----NQIQAIIEAGIIGPLVNLLLNA--EFE  285 (431)
Q Consensus       226 ~~~l~~L~~lL~~~~--~------~----~v~~~a~~~L~nl~~-~~~-----~~~~~l~~~~~i~~L~~ll~~~--~~~  285 (431)
                      .+.+|.|.++|....  +      .    .-...++.++..+.. +++     .+...+...+++..|+.++.++  ..+
T Consensus       253 ~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~d  332 (970)
T KOG0946|consen  253 GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPAD  332 (970)
T ss_pred             cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHh
Confidence            999999998885321  1      1    112345566666665 222     2224566788999999999877  578


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHCC----------ChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhh
Q 014088          286 IKKEAAWAISNATSGGSNEQIKFLVSQG----------CIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAE  347 (431)
Q Consensus       286 v~~~a~~aL~~l~~~~~~~~~~~l~~~~----------~l~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~  347 (431)
                      |+..++-+++++.+.+. .....|.+..          ++-.+..+..+. ....+..++.++..++......
T Consensus       333 IltesiitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g  404 (970)
T KOG0946|consen  333 ILTESIITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG  404 (970)
T ss_pred             HHHHHHHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence            99999999999998763 3333333321          122334444444 4577888888988888766544

>PTZ00429 beta-adaptin; Provisional

Probab=99.29  E-value=6.2e-09  Score=103.62  Aligned_cols=250  Identities=15%  Similarity=0.103  Sum_probs=169.3

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  104 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  104 (431)
                      +..+++.+++.-....+.+++...++..  +.   ++..+.+=++++++.+|..|+++++++-.  +.....     .+.
T Consensus        76 ~~~S~d~elKKLvYLYL~~ya~~~pela--lL---aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~  143 (746)
T PTZ00429         76 LAPSTDLELKKLVYLYVLSTARLQPEKA--LL---AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLE  143 (746)
T ss_pred             HhCCCCHHHHHHHHHHHHHHcccChHHH--HH---HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHH
Confidence            3346667888877777777776554432  11   46788888888999999999999999854  222222     345


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088          105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA  184 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  184 (431)
                      ++.+.+ .+.++-+|+.|+.++.++.+..+.  .....++++.+.+++.+.++.+..+|+.+|..+....+....  ...
T Consensus       144 ~lkk~L-~D~~pYVRKtAalai~Kly~~~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~  218 (746)
T PTZ00429        144 PLRRAV-ADPDPYVRKTAAMGLGKLFHDDMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSN  218 (746)
T ss_pred             HHHHHh-cCCCHHHHHHHHHHHHHHHhhCcc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHH
Confidence            667777 788999999999999999876542  233457888899999999999999999999999876554333  222


Q ss_pred             CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHH
Q 014088          185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQI  263 (431)
Q Consensus       185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~  263 (431)
                      +.+..++..+..-++-.+...+.+|......++..   .  ..++..+...|++. ++.|..+|+.++.++... +++..
T Consensus       219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e---~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~  292 (746)
T PTZ00429        219 EWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES---A--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELI  292 (746)
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH---H--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHH
Confidence            45566666666555445556666664432222211   1  24677788888888 899999999999998764 23433


Q ss_pred             HHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          264 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       264 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      ..+.. .+-+.++.+ .+++++++..++..|..++.
T Consensus       293 ~~~~~-rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~  326 (746)
T PTZ00429        293 ERCTV-RVNTALLTL-SRRDAETQYIVCKNIHALLV  326 (746)
T ss_pred             HHHHH-HHHHHHHHh-hCCCccHHHHHHHHHHHHHH
Confidence            33322 123445555 34566777777777665554

>PTZ00429 beta-adaptin; Provisional

Probab=99.27  E-value=1.6e-08  Score=100.74  Aligned_cols=214  Identities=15%  Similarity=0.119  Sum_probs=149.2

Q ss_pred             CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHH
Q 014088           28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL  107 (431)
Q Consensus        28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~  107 (431)
                      +++|.+|..|++.|+++-.  ++..+.     +++.+.+.+.+.++-||..|+.++.++....++   .+...+.++.+.
T Consensus       116 d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~  185 (746)
T PTZ00429        116 NSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLV  185 (746)
T ss_pred             CCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHH
Confidence            5678999999999888765  333322     456778888899999999999999999876653   344567788888


Q ss_pred             HHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 014088          108 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC  187 (431)
Q Consensus       108 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  187 (431)
                      ++| .+.++.+..+|+.+|..+....+. ........+..++..+..-++=.+..++.+|....-......     ..++
T Consensus       186 ~LL-~D~dp~Vv~nAl~aL~eI~~~~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il  258 (746)
T PTZ00429        186 ELL-NDNNPVVASNAAAIVCEVNDYGSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLL  258 (746)
T ss_pred             HHh-cCCCccHHHHHHHHHHHHHHhCch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHH
Confidence            887 789999999999999999876543 233446667777777777777777777777755332222111     2567


Q ss_pred             HHHHHhcCCCCcccHHHHHHHHhHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHH
Q 014088          188 PRLVELLRHPSPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  261 (431)
Q Consensus       188 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  261 (431)
                      ..+...|++.++.|...|++++.++.... +.....+.. .+.+.++.++ ++ +++++.-++..+.-+....+.
T Consensus       259 ~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~  330 (746)
T PTZ00429        259 TRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPN  330 (746)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHH
Confidence            88888899999999999999999987542 222222111 2234455553 34 567777777776666554343

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.26  E-value=3e-08  Score=88.72  Aligned_cols=349  Identities=14%  Similarity=0.150  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHHHHcCCC-hHhHHHHHhC---CChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHH-------HH
Q 014088           32 AVQFEAAWALTNIASGT-SENTRVVIDH---GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLV-------LS   99 (431)
Q Consensus        32 ~~~~~a~~~L~~l~~~~-~~~~~~~~~~---g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i-------~~   99 (431)
                      .+.+.-+..+.++.... ++.|..+...   ..+..++.+++. ..++....++..+.-+.+.+.. |..+       ..
T Consensus        34 ~ise~d~~~i~~~~~~~~~~~r~~~l~~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~s-r~~lf~~~a~~~k  112 (442)
T KOG2759|consen   34 MISEEDYQFIRRLEKAPLSKERAQVLSANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRS-RVDLFHDYAHKLK  112 (442)
T ss_pred             HHhHhhHHHHHHHhcccchhhhhHHhhcccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCch-HHHHHHHHHHhhh
Confidence            34444455555554322 2345556554   356677777776 4456666666666665544332 2211       12


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh-hHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHH
Q 014088          100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDK  177 (431)
Q Consensus       100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~  177 (431)
                      ...-...+.+| ...+.-+...+.++++.++...+..... ...-....+-..+++ .+.+.+..+.+||..+...++-+
T Consensus       113 ~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR  191 (442)
T KOG2759|consen  113 RTEWLSFLNLL-NRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYR  191 (442)
T ss_pred             ccchHHHHHHH-hcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchh
Confidence            23356677888 6667777788999999999876433322 223334455555655 57788888999999998887655


Q ss_pred             HHHHHHhCcHHHHHHhcCC--CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh
Q 014088          178 IQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  255 (431)
Q Consensus       178 ~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  255 (431)
                      .. +....++..++..+.+  .+-.++...+.+++.|+.... ..+.+...+.++.|..++++...++|-+-++.++.|+
T Consensus       192 ~~-~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl  269 (442)
T KOG2759|consen  192 YA-FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL  269 (442)
T ss_pred             he-eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 5666777888888743  456788889999999987655 4455677799999999999887899999999999999


Q ss_pred             hcCCH------HHHHHHHHhCCHHHHHHHHccC--CHhHHHHH-------HHHHHHhcCC--------------CC----
Q 014088          256 TAGNV------NQIQAIIEAGIIGPLVNLLLNA--EFEIKKEA-------AWAISNATSG--------------GS----  302 (431)
Q Consensus       256 ~~~~~------~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a-------~~aL~~l~~~--------------~~----  302 (431)
                      +...+      +....++..++.+.+-.+-+.+  |.++....       -.....++..              ++    
T Consensus       270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~  349 (442)
T KOG2759|consen  270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKS  349 (442)
T ss_pred             hccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccc
Confidence            98653      5556777776666555554443  44433221       1111111111              00    


Q ss_pred             ----HHHHHHHHHC--CChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh
Q 014088          303 ----NEQIKFLVSQ--GCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL  375 (431)
Q Consensus       303 ----~~~~~~l~~~--~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l  375 (431)
                          .++...+.+.  .++..|+.+++. .||.+...|+.-+..+++....            .+..+.+.||.+.+.+|
T Consensus       350 e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~------------gk~vv~k~ggKe~vM~L  417 (442)
T KOG2759|consen  350 EKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE------------GKAVVEKYGGKERVMNL  417 (442)
T ss_pred             cchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch------------HhHHHHHhchHHHHHHH
Confidence                2445555544  358888999975 4688888899889998887654            37789999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhcC
Q 014088          376 QSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       376 ~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      ++|+|++|+-.|..+++++..
T Consensus       418 lnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  418 LNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             hcCCCchHHHHHHHHHHHHHh
Confidence            999999999999999887754

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=6.9e-09  Score=98.88  Aligned_cols=328  Identities=16%  Similarity=0.193  Sum_probs=211.4

Q ss_pred             cccchhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHH
Q 014088            2 CCFDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW   81 (431)
Q Consensus         2 ~c~~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~   81 (431)
                      ||.|-     ++| .|-|++-+-+ ++++..-+..|+.+++.+..+....+..-+-.+++|.++.++.+++..++..+.|
T Consensus       356 ~~~D~-----Iv~-~Vl~Fiee~i-~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAw  428 (859)
T KOG1241|consen  356 CVGDD-----IVP-HVLPFIEENI-QNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAW  428 (859)
T ss_pred             Hhccc-----chh-hhHHHHHHhc-CCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHH
Confidence            56664     344 3333333344 4777899999999999999877777666666789999999999999999999999


Q ss_pred             HHHHhcCCChHHHH-HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC----CC----Ch-hhHhhhHHHHHHh
Q 014088           82 ALGNVAGDSPKCRD-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP----QP----LF-EQTRPALPALERL  151 (431)
Q Consensus        82 ~L~~l~~~~~~~~~-~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~----~~----~~-~~~~~~i~~L~~l  151 (431)
                      +|+.++...++... .......+..++.-|  ...|.+..++||++.+|+..-+    ..    .. .....++..|++.
T Consensus       429 tlgrI~d~l~e~~~n~~~l~~~l~~l~~gL--~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~  506 (859)
T KOG1241|consen  429 TLGRIADFLPEAIINQELLQSKLSALLEGL--NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV  506 (859)
T ss_pred             HHHHHHhhchhhcccHhhhhHHHHHHHHHh--hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence            99999977664321 122233344455555  2357889999999999985421    11    00 1122333344443


Q ss_pred             hcC---CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH----hcC-----CCC----cccHHHHHHHHhHhhcC
Q 014088          152 IHS---NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE----LLR-----HPS----PSVLIPALRTVGNIVTG  215 (431)
Q Consensus       152 L~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~----ll~-----~~~----~~v~~~a~~~l~~l~~~  215 (431)
                      -+.   ++..+|..+..+|..+..+.++....++. ++...+..    .++     ..+    .+++...+.+|..+.+.
T Consensus       507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk  585 (859)
T KOG1241|consen  507 TDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRK  585 (859)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            332   34678999999999999887765443332 22222222    222     221    23455566666666554


Q ss_pred             ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH-ccCCHhHHHHHHHHH
Q 014088          216 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAI  294 (431)
Q Consensus       216 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL  294 (431)
                      ....+....+ .++..+++++.+..+..+...|..+++.++..-......... .+.|.|..-| +..+..|...|+..+
T Consensus       586 ~~~~~~~~~d-~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~-~f~pyL~~gL~n~~e~qVc~~aVglV  663 (859)
T KOG1241|consen  586 VGSDIREVSD-QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP-AFKPYLLMGLSNFQEYQVCAAAVGLV  663 (859)
T ss_pred             ccccchhHHH-HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            4333333332 567788888888546778889999999888632222222222 3677787777 445888999999999


Q ss_pred             HHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHh
Q 014088          295 SNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKA  343 (431)
Q Consensus       295 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~~L~~l~~~  343 (431)
                      +.+++.-..+...+  ..+++..|++.|+++  +..++-..+.+++.+.-.
T Consensus       664 gdl~raL~~~i~py--~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla  712 (859)
T KOG1241|consen  664 GDLARALEDDILPY--CDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA  712 (859)
T ss_pred             HHHHHHHHhhhhhH--HHHHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence            99987654344333  446889999999876  456666666666666543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=3.5e-09  Score=93.35  Aligned_cols=187  Identities=19%  Similarity=0.208  Sum_probs=156.8

Q ss_pred             cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      ++.+++-++.|+.-|..++. +-++...+...|+...++.++++.+..+|..|+|+++..+..+|..+..+++.|+++.|
T Consensus        93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            45667889999999999986 67888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcC--CChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014088          107 LAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIE  183 (431)
Q Consensus       107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  183 (431)
                      +..+..+.+..++..|+.+++.+.++. +........++...|...+++  .+...+..++..+..+..........+..
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            999987788889999999999999998 444444446679999999998  46778889999999998765544444445


Q ss_pred             hCcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088          184 AGVCPRLVELLRHPSPSVLIPALRTVGNIVT  214 (431)
Q Consensus       184 ~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  214 (431)
                      .++...+..+....+..+...++.++..+..
T Consensus       252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            5666666777777788888888877766654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=4.9e-09  Score=99.87  Aligned_cols=313  Identities=15%  Similarity=0.091  Sum_probs=205.7

Q ss_pred             CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHHHHHHHcC-ChHH
Q 014088           29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNG-ALMP  105 (431)
Q Consensus        29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~-~i~~  105 (431)
                      +...++..++.+|+.+|.+-....-.-....++..+++.+..  ++..+|..|+.+|.|-......+...-.+.+ +.+.
T Consensus       142 ~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqv  221 (859)
T KOG1241|consen  142 QASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQV  221 (859)
T ss_pred             cchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeee
Confidence            333689999999999998543332222224678888887765  7889999999999986432211111111112 2334


Q ss_pred             HHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH--------
Q 014088          106 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND--------  176 (431)
Q Consensus       106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--------  176 (431)
                      .++.- ++++.+++..|..||..+..-.... ..-+...+++.-+..+++++++|...+....++++...-+        
T Consensus       222 vcEat-q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~  300 (859)
T KOG1241|consen  222 VCEAT-QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEA  300 (859)
T ss_pred             eeecc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444 7889999999999999887653111 1122244666667778899999999999999988753211        


Q ss_pred             -------HHHHHHH---hCcHHHHHHhcCC-------CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc
Q 014088          177 -------KIQAVIE---AGVCPRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN  239 (431)
Q Consensus       177 -------~~~~~~~---~~~i~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  239 (431)
                             ....+..   .+++|.|+++|..       +++.....|-.||.-++.....   .++. .+++.+-+.++++
T Consensus       301 ~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~-~Vl~Fiee~i~~p  376 (859)
T KOG1241|consen  301 VDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVP-HVLPFIEENIQNP  376 (859)
T ss_pred             hhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchh-hhHHHHHHhcCCc
Confidence                   0011111   2567778888743       3456777777777776653322   2222 5667777788888


Q ss_pred             chhhHHHHHHHHHHHhhcCC-HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHH
Q 014088          240 YKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL  318 (431)
Q Consensus       240 ~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L  318 (431)
                       +.+-|..|+.+++.+..+. ++....+ ..+.+|.++.++.++..-++..+.|+|+.++................+..+
T Consensus       377 -dwr~reaavmAFGSIl~gp~~~~Lt~i-V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l  454 (859)
T KOG1241|consen  377 -DWRNREAAVMAFGSILEGPEPDKLTPI-VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSAL  454 (859)
T ss_pred             -chhhhhHHHHHHHhhhcCCchhhhhHH-HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHH
Confidence             9999999999999998853 4444444 446899999999988889999999999999876532111111112223333


Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 014088          319 CDLLNCPDPRIVTVCLEGLENILKAGEAEKN  349 (431)
Q Consensus       319 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~  349 (431)
                      ..=++ +.|.+..+++|++.++.+.......
T Consensus       455 ~~gL~-DePrva~N~CWAf~~Laea~~eA~~  484 (859)
T KOG1241|consen  455 LEGLN-DEPRVASNVCWAFISLAEAAYEAAV  484 (859)
T ss_pred             HHHhh-hCchHHHHHHHHHHHHHHHHHHhcc
Confidence            33332 5788999999999999977666543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=6.1e-09  Score=91.85  Aligned_cols=189  Identities=20%  Similarity=0.227  Sum_probs=158.7

Q ss_pred             CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHH
Q 014088          155 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD  234 (431)
Q Consensus       155 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~  234 (431)
                      .+.+-+..|+.-|..++.+-+. ...++..|++..++.++.+.+..+|..|+++++.++.+++.....+++.++++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~iDn-Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDN-ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhh-HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            4677788888888888877654 455888899999999999999999999999999999999999999999999999999


Q ss_pred             HhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHHHC
Q 014088          235 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQ  312 (431)
Q Consensus       235 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  312 (431)
                      .+.++.+..+|..|+++++++.++++.....+...+.+..|.+.++++  +...+..++..+..++.... .....+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence            998876788899999999999998888888888888899999999984  77888999999999987553 222344456


Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088          313 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       313 ~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  345 (431)
                      +....+..+....+.++.+.++.++..++..-.
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~  285 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS  285 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence            667777777777788888888888777765443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=1.2e-08  Score=97.58  Aligned_cols=288  Identities=16%  Similarity=0.200  Sum_probs=211.4

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCCh----
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTN----  175 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~----  175 (431)
                      -++.|+....++.=.+-|+.|+..|..+++.   .+......+++.+++.|+..  |+++...++.++.++..+++    
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v   99 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV   99 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence            5778888887777788899999999999986   34445567888888888754  89999999999999987652    


Q ss_pred             --HHH----------HH-HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHH-h-hcCChHHHHHHhcccc
Q 014088          176 --DKI----------QA-VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI-I-NHQALPCLLDLLTQNY  240 (431)
Q Consensus       176 --~~~----------~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~-~~~~l~~L~~lL~~~~  240 (431)
                        +..          +. +...+.+..++..+...+..||..++..+.++....+...+.+ + ..-++..++.+|.+. 
T Consensus       100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-  178 (970)
T KOG0946|consen  100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-  178 (970)
T ss_pred             cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-
Confidence              111          11 2334788889999999999999999999999987765443333 3 557899999999999 


Q ss_pred             hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC---C-HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChH
Q 014088          241 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA---E-FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK  316 (431)
Q Consensus       241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~---~-~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~  316 (431)
                      .+.+|.+++..|..+..+++...+.+.-.+++..|..++..+   + .-|...|+..+.|+..++. .+...|.+.+.++
T Consensus       179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~-SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI-SNQNFFREGSYIP  257 (970)
T ss_pred             hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc-chhhHHhccccHH
Confidence            999999999999999998887666666678999999999764   2 3578889999999998765 5667888999999


Q ss_pred             HHHhhcCC---CCH--------HH--HHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC--CH
Q 014088          317 PLCDLLNC---PDP--------RI--VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NT  381 (431)
Q Consensus       317 ~L~~ll~~---~~~--------~v--~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~  381 (431)
                      .|..++..   .+.        .+  ...++.++..++.-+.....      .......+.+.++++.|-.++-|+  ..
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~------~~q~qk~l~ss~ll~~Lc~il~~~~vp~  331 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSI------THQNQKALVSSHLLDVLCTILMHPGVPA  331 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHH------HHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence            99977763   221        11  12344555554433322111      111224677888899988887666  46


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q 014088          382 EIYEKAVKILETYWVEEDE  400 (431)
Q Consensus       382 ~v~~~a~~~l~~~~~~e~~  400 (431)
                      +|+.-+.........+..+
T Consensus       332 dIltesiitvAevVRgn~~  350 (970)
T KOG0946|consen  332 DILTESIITVAEVVRGNAR  350 (970)
T ss_pred             hHHHHHHHHHHHHHHhchH
Confidence            6766666666555555444

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.10  E-value=6e-09  Score=94.97  Aligned_cols=227  Identities=14%  Similarity=0.187  Sum_probs=163.7

Q ss_pred             hHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhHh-------hhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014088          103 LMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTR-------PALPALERLIHSNDDEVLTDACWALSYLSDGT  174 (431)
Q Consensus       103 i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  174 (431)
                      ...++++|... +++++.++++..+..+....+........       ..+..+++++..+|..+...++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            55667777666 78999999999999999987644333221       24567777889999999999999999998776


Q ss_pred             hHHHHHHHHhCcHHHHHHhcCC----CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHh------cccchhhH
Q 014088          175 NDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------TQNYKKSI  244 (431)
Q Consensus       175 ~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL------~~~~~~~v  244 (431)
                      +....... .+.++.+++.+.+    ++..++..++.++.++... +..+..+.+.++++.+..++      .+.....+
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            55433222 3556666666654    4556778899999999864 55778888899999999999      44547889


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 014088          245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  323 (431)
Q Consensus       245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  323 (431)
                      +.+++.++.-++.. ++....+.+.++++.|++++... ..+|.+-++.++.|++..........++..++++.+..+..
T Consensus       215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            99999999999887 78888899989999999999876 78999999999999999876557888888888887777765


Q ss_pred             C--CCHHHHHH
Q 014088          324 C--PDPRIVTV  332 (431)
Q Consensus       324 ~--~~~~v~~~  332 (431)
                      .  .|+++.+-
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            3  57777653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.07  E-value=5.7e-09  Score=95.11  Aligned_cols=227  Identities=18%  Similarity=0.253  Sum_probs=157.5

Q ss_pred             ChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHHHHHHH------cCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 014088           60 AVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLS------NGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  131 (431)
Q Consensus        60 ~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~------~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  131 (431)
                      ....++.+|+.  .++++.+.++..+..+..+.+...+.+..      .....++++++ ..+|..+...++.+|..+..
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence            45566666654  68899999999999998777654444443      22678888877 67799999999999999999


Q ss_pred             CCCCCChhhHhhhHHHHHHhhc----CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-----CC--CCcc
Q 014088          132 GKPQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-----RH--PSPS  200 (431)
Q Consensus       132 ~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-----~~--~~~~  200 (431)
                      ..+..........++.++..+.    +++.+++..++.++.++...+. ....+.+.++++.+..++     ..  ....
T Consensus       135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q  213 (312)
T PF03224_consen  135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQ  213 (312)
T ss_dssp             STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred             cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence            8766555533556666666655    3466778999999999997654 456678889999999999     22  3456


Q ss_pred             cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-HHHHHHHHhCCHHHHHHHH
Q 014088          201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLL  279 (431)
Q Consensus       201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll  279 (431)
                      +...++.++|.++... .....+.+.++++.+.++++....+++.+-++.++.|+....+ .....++..|+++.+-.+.
T Consensus       214 l~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~  292 (312)
T PF03224_consen  214 LQYQALLCLWLLSFEP-EIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS  292 (312)
T ss_dssp             HHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCH-HHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence            7888999999998854 4566677778999999999988789999999999999998544 3788888887777665555


Q ss_pred             ccC--CHhHHHH
Q 014088          280 LNA--EFEIKKE  289 (431)
Q Consensus       280 ~~~--~~~v~~~  289 (431)
                      ..+  |+++...
T Consensus       293 ~rk~~Dedl~ed  304 (312)
T PF03224_consen  293 ERKWSDEDLTED  304 (312)
T ss_dssp             SS--SSHHHHHH
T ss_pred             cCCCCCHHHHHH
Confidence            544  7776644

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.07  E-value=1.6e-08  Score=90.50  Aligned_cols=275  Identities=13%  Similarity=0.069  Sum_probs=193.8

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCChHhH---HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHH
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENT---RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDL   96 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~   96 (431)
                      ++.+|. .+++-+...+.+++..++......-   +.-.   ....|...+++ .+......+++||..+...+ +.|..
T Consensus       119 fl~ll~-r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~---~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~  193 (442)
T KOG2759|consen  119 FLNLLN-RQDTFIVEMSFRILSKLACFGNCKMELSELDV---YKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYA  193 (442)
T ss_pred             HHHHHh-cCChHHHHHHHHHHHHHHHhccccccchHHHH---HHHHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhhe
Confidence            344555 3456788878999988876332111   1111   12344445555 66777888899999998765 46888


Q ss_pred             HHHcCChHHHHHHh-ccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccCC
Q 014088           97 VLSNGALMPLLAQF-NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGT  174 (431)
Q Consensus        97 i~~~~~i~~l~~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~  174 (431)
                      +...+++..++..+ .+..+-.++...+.|+|.|+-+++........+.++.|..++++. .++|.+-++.++.|+....
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~  273 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG  273 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            88889999999998 455578899999999999998875555555578999999999865 6889999999999999776


Q ss_pred             h------HHHHHHHHhCcHHHHHHhcCC--CCcccHHHHHHHHh-------HhhcCC--------------h--------
Q 014088          175 N------DKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVG-------NIVTGD--------------D--------  217 (431)
Q Consensus       175 ~------~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~-------~l~~~~--------------~--------  217 (431)
                      +      .....++..++.+.+-.+...  +|+++....-..-.       .++...              |        
T Consensus       274 ~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW  353 (442)
T KOG2759|consen  274 PDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW  353 (442)
T ss_pred             chhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence            4      223345555555444333322  34443332222111       122110              0        


Q ss_pred             -hhhHHHh--hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHH
Q 014088          218 -MQTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI  294 (431)
Q Consensus       218 -~~~~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  294 (431)
                       ++...+-  +..+++.|+++|+.+.++.+..-||.-++...++.|+....+.+.|+=+.+++++++++++||.+|+.|+
T Consensus       354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlav  433 (442)
T KOG2759|consen  354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAV  433 (442)
T ss_pred             HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHH
Confidence             1111222  2345889999998886688889999999999998899999999999999999999999999999999999


Q ss_pred             HHhcCC
Q 014088          295 SNATSG  300 (431)
Q Consensus       295 ~~l~~~  300 (431)
                      ..+..+
T Consensus       434 Q~lm~~  439 (442)
T KOG2759|consen  434 QKLMVH  439 (442)
T ss_pred             HHHHhh
Confidence            887653

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=1.2e-06  Score=82.53  Aligned_cols=334  Identities=16%  Similarity=0.116  Sum_probs=220.0

Q ss_pred             cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      +.+++.+|.....|+.-+.......    -...+.+.+.+++......-+..+.+.++.+..+...  ..+.+.+++..+
T Consensus       106 ~tps~~~q~~~~~~l~~~~~~~~~~----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l  179 (569)
T KOG1242|consen  106 DTPSKSVQRAVSTCLPPLVVLSKGL----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNL  179 (569)
T ss_pred             CCCcHHHHHHHHHHhhhHHHHhhcc----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHH
Confidence            3566788888888877665421111    1113567778888888888889999999998876643  455667788888


Q ss_pred             HHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 014088          107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV  186 (431)
Q Consensus       107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  186 (431)
                      ...+....+..-++.+..+....+..-........-..+|.++..+.+...++|..+..+...+...-+...   ++ .+
T Consensus       180 ~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a---VK-~l  255 (569)
T KOG1242|consen  180 SKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA---VK-LL  255 (569)
T ss_pred             HHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch---hh-Hh
Confidence            888844333333333444444444333333344456778888888888889999988888876654433221   11 23


Q ss_pred             HHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc--CCHHHHH
Q 014088          187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQ  264 (431)
Q Consensus       187 i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~  264 (431)
                      ++.++.-+....+..+..++..++.++...+.+....+ ..++|.+.+.|.+. .+++|+.+..++.+++.  .+++ ++
T Consensus       256 lpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I~  332 (569)
T KOG1242|consen  256 LPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-IQ  332 (569)
T ss_pred             hhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-HH
Confidence            44444444444788899999999999988776655444 48999999999999 99999999999999987  4455 22


Q ss_pred             HHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088          265 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  342 (431)
Q Consensus       265 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~  342 (431)
                           .++|.|++.+.+++..+. ++...|+.-....  .+.-+..     .++.|.+-+...+..+.+.+..++.|+++
T Consensus       333 -----~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr~t~~IidNm~~  401 (569)
T KOG1242|consen  333 -----KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKRKTAIIIDNMCK  401 (569)
T ss_pred             -----HHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence                 257889998888763332 3333333322211  1111111     35555566666777888999999999998


Q ss_pred             hhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088          343 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  395 (431)
                      .-+....         ....+.+.  ++.++....+..|++|..+.++|..+.
T Consensus       402 LveDp~~---------lapfl~~L--lp~lk~~~~d~~PEvR~vaarAL~~l~  443 (569)
T KOG1242|consen  402 LVEDPKD---------LAPFLPSL--LPGLKENLDDAVPEVRAVAARALGALL  443 (569)
T ss_pred             hhcCHHH---------HhhhHHHH--hhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence            7643322         34444433  677787777889999999999885443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.95  E-value=3.7e-08  Score=97.02  Aligned_cols=250  Identities=15%  Similarity=0.206  Sum_probs=191.2

Q ss_pred             hhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH
Q 014088           14 SLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC   93 (431)
Q Consensus        14 ~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   93 (431)
                      |.---|+++|.|++   .-=|..|+..|+....-.+-.-.....-|+.|.++++|+++-.+++...+.+...|..-++.+
T Consensus       470 PPeQLPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SC  546 (1387)
T KOG1517|consen  470 PPEQLPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSC  546 (1387)
T ss_pred             ChHhcchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchh
Confidence            33344577778873   344678888888887766777777778899999999999999999999999999987766778


Q ss_pred             HHHHHHcCChHHHHHHhcccc--chhHHHHHHHHHHHhhcCCCCCChhh-HhhhHHHHHHhhcCC-ChHHHHHHHHHHHH
Q 014088           94 RDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPALERLIHSN-DDEVLTDACWALSY  169 (431)
Q Consensus        94 ~~~i~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~  169 (431)
                      +..+++.++-..+++.|..++  +++-+..|+.+|+.++.+.+..+... ..+++...+..++++ .+-++.+++-+|+.
T Consensus       547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~  626 (1387)
T KOG1517|consen  547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGR  626 (1387)
T ss_pred             HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            888888888888888885422  45788899999999999875554443 478889999999985 68899999999999


Q ss_pred             hccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC----ChhhhHHH------------hhcCCh---H
Q 014088          170 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DDMQTQCI------------INHQAL---P  230 (431)
Q Consensus       170 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~l---~  230 (431)
                      |-.+.+...-.-.+.++.+.|+.+|.++-++||..|+.+|+.+...    .++.....            ++..+.   -
T Consensus       627 LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~  706 (1387)
T KOG1517|consen  627 LWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLM  706 (1387)
T ss_pred             HhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHH
Confidence            9988765544455567889999999999999999999999999875    22222111            121222   2


Q ss_pred             HHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 014088          231 CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII  267 (431)
Q Consensus       231 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  267 (431)
                      .++.+++.. .+-+|.+.+-+|+.+..+.........
T Consensus       707 ~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  707 SLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             HHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            667777888 899999999999999886555444443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=2e-06  Score=82.00  Aligned_cols=190  Identities=17%  Similarity=0.184  Sum_probs=124.2

Q ss_pred             hhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014088            8 FECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA   87 (431)
Q Consensus         8 ~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~   87 (431)
                      ..+.+-+..+.      |.++..|-+|..|+..+..+....++.-.     ..+|.|.+-|.++++.++..|..+++.|+
T Consensus       141 LARDLa~Dv~t------LL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELA  209 (877)
T KOG1059|consen  141 LARDLADDVFT------LLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELA  209 (877)
T ss_pred             hhHHHHHHHHH------HHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence            34456677777      55566678888888888888764444433     36788888888888899888888888888


Q ss_pred             CCChHHH--------HHHH-------------------------HcCChHHHHHHhccccchhHHHHHHHHHHH--hhcC
Q 014088           88 GDSPKCR--------DLVL-------------------------SNGALMPLLAQFNEHAKLSMLRNATWTLSN--FCRG  132 (431)
Q Consensus        88 ~~~~~~~--------~~i~-------------------------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~--l~~~  132 (431)
                      +.+|.+.        ..+.                         ....+++|.+++.+..-..+...+..++..  ++.+
T Consensus       210 rKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  210 RKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             hhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence            7665321        1111                         111344444444222222223333322221  1111


Q ss_pred             CCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHh
Q 014088          133 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  212 (431)
Q Consensus       133 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l  212 (431)
                      .+ .......-.+..|-.++.++|+.++.-.+.+++.+....+...+.     --+.++++|.+.++++|..|+..+.-+
T Consensus       290 ~~-d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gm  363 (877)
T KOG1059|consen  290 MS-DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGM  363 (877)
T ss_pred             CC-CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            11 122233456677777888999999999999999999887765542     236788999999999999999999888


Q ss_pred             hc
Q 014088          213 VT  214 (431)
Q Consensus       213 ~~  214 (431)
                      +.
T Consensus       364 Vs  365 (877)
T KOG1059|consen  364 VS  365 (877)
T ss_pred             hh
Confidence            75

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.86  E-value=1e-06  Score=79.99  Aligned_cols=273  Identities=14%  Similarity=0.165  Sum_probs=187.0

Q ss_pred             HHHHHHcCChHHHHHHhccccch--hHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHh
Q 014088           94 RDLVLSNGALMPLLAQFNEHAKL--SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYL  170 (431)
Q Consensus        94 ~~~i~~~~~i~~l~~~l~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l  170 (431)
                      .+.+...|++..|++++ ..++.  .++..+..+|..+..... .......+ +..++.+.+ ...++.....+..|.++
T Consensus       173 CD~iR~~~~lD~Llrmf-~aPn~et~vRve~~rlLEq~~~aeN-~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMF-QAPNLETSVRVEAARLLEQILVAEN-RDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHH-hCCchhHHHHHHHHHHHHHHHhhhh-hhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            34566678899999999 55543  458889998888765532 22222222 444555544 34678889999999999


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHH
Q 014088          171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC  249 (431)
Q Consensus       171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~  249 (431)
                      .++.+...+.++..|++..++...+..++.+.+.+.-+|+|++.+. ....+.+++..+-+.|..+-.+. ++-+|..||
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHHHHHHHH
Confidence            9999888888999999999999999999999999999999998754 34556677778888888888887 899999999


Q ss_pred             HHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHH
Q 014088          250 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI  329 (431)
Q Consensus       250 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  329 (431)
                      .+++.++.. .+.-..+-.+|.+..+-.++..-++.--.   +--...+....++         -++.|+.++++.-.+.
T Consensus       329 lAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~FA---RD~hd~aQG~~~d---------~LqRLvPlLdS~R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGRFA---RDAHDYAQGRGPD---------DLQRLVPLLDSNRLEA  395 (832)
T ss_pred             HHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcchhh---hhhhhhhccCChH---------HHHHhhhhhhcchhhh
Confidence            999988775 55555555666655444444444432110   0111222223333         3566777777544443


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088          330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  393 (431)
Q Consensus       330 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  393 (431)
                        .++.+++-.++..-+..+       + -...+.+.|+|+.|.++..+++.--...|..+|.-
T Consensus       396 --q~i~AF~l~~EAaIKs~Q-------~-K~kVFseIGAIQaLKevaSS~d~vaakfAseALtv  449 (832)
T KOG3678|consen  396 --QCIGAFYLCAEAAIKSLQ-------G-KTKVFSEIGAIQALKEVASSPDEVAAKFASEALTV  449 (832)
T ss_pred             --hhhHHHHHHHHHHHHHhc-------c-chhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence              345555544443333211       1 15678899999999999999988777788887763

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=4.8e-07  Score=87.17  Aligned_cols=294  Identities=17%  Similarity=0.192  Sum_probs=187.2

Q ss_pred             CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHH
Q 014088           28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL  107 (431)
Q Consensus        28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~  107 (431)
                      +++|.+|.-|++.++.+-..  ....     -+...+...+++.++.+|..+..+..++-..++   +.+...|.+..|-
T Consensus        97 d~np~iR~lAlrtm~~l~v~--~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~  166 (734)
T KOG1061|consen   97 DPNPLIRALALRTMGCLRVD--KITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALK  166 (734)
T ss_pred             CCCHHHHHHHhhceeeEeeh--HHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHH
Confidence            34455555555555444321  1111     245677778888899999998888888876554   4677788899999


Q ss_pred             HHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 014088          108 AQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV  186 (431)
Q Consensus       108 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  186 (431)
                      .++ .++++.+..+|+.+|..+....+. .........+..++..++.-+.=-+...+.++.+-.-.++...+     .+
T Consensus       167 ~ll-~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i  240 (734)
T KOG1061|consen  167 DLL-SDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DI  240 (734)
T ss_pred             HHh-cCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HH
Confidence            998 688999999999999999988754 23333355666666666654444455555555544433332222     45


Q ss_pred             HHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHH
Q 014088          187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  266 (431)
Q Consensus       187 i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  266 (431)
                      ++.+...+.+.++.+...+...+..+....... ...+-...-+.++.++... . +++.-|+.-+.-+....++....-
T Consensus       241 ~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~-~~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~  317 (734)
T KOG1061|consen  241 CERLTPRLQHANSAVVLSAVKVILQLVKYLKQV-NELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVE  317 (734)
T ss_pred             HHHhhhhhccCCcceEeehHHHHHHHHHHHHHH-HHHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhH
Confidence            677788888888888888888888887654432 2222235556666666655 3 555554444443333333321100


Q ss_pred             -------------------------HH-hC---CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHH
Q 014088          267 -------------------------IE-AG---IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP  317 (431)
Q Consensus       267 -------------------------~~-~~---~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~  317 (431)
                                               .. ..   ++..+......-+.+..+++++++++++..-..       ..++++.
T Consensus       318 ~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~  390 (734)
T KOG1061|consen  318 IKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSI  390 (734)
T ss_pred             hHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHH
Confidence                                     00 01   233333333444788889999999999875421       1678999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088          318 LCDLLNCPDPRIVTVCLEGLENILKAGEAE  347 (431)
Q Consensus       318 L~~ll~~~~~~v~~~al~~L~~l~~~~~~~  347 (431)
                      |.++++.+...+.+.+...++.+++...+.
T Consensus       391 lLell~~~~~yvvqE~~vvi~dilRkyP~~  420 (734)
T KOG1061|consen  391 LLELLETKVDYVVQEAIVVIRDILRKYPNK  420 (734)
T ss_pred             HHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence            999999777777777888888888876553

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.85  E-value=2.5e-07  Score=90.45  Aligned_cols=272  Identities=15%  Similarity=0.151  Sum_probs=164.5

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHh
Q 014088           63 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR  142 (431)
Q Consensus        63 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  142 (431)
                      .|++.+.+++.+.|--|..-|.+=.......-+.-.+...+..++++| .+.+.+++..|..|++-++..   .......
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL-~D~ngEVQnlAVKClg~lvsK---vke~~le   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLL-EDKNGEVQNLAVKCLGPLVSK---VKEDQLE   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHH-hccCcHHHHHHHHHHHHHHhh---chHHHHH
Confidence            567777788888887776655443222111111112334577889999 888999999999999999854   2233334


Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh----CcHHHHHHhcCC--CCcccHHHHHHHHhHhhcCC
Q 014088          143 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA----GVCPRLVELLRH--PSPSVLIPALRTVGNIVTGD  216 (431)
Q Consensus       143 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~  216 (431)
                      ..+..|..-+-++....+.-..-.|.....+-+.........    .+.+.+...+..  +...++..++.+++.+....
T Consensus        85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~  164 (1233)
T KOG1824|consen   85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF  164 (1233)
T ss_pred             HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence            555555555444444444333333332222211111112222    344444444432  44558888888887766543


Q ss_pred             hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHH
Q 014088          217 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAI  294 (431)
Q Consensus       217 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL  294 (431)
                      ....-. +..+++..++.-+.++ ...+|+.|+.+|+.++.. +.+....     ++..|.+-|... .....+--+.+|
T Consensus       165 g~ll~~-fh~~il~~l~~ql~s~-R~aVrKkai~~l~~la~~~~~~ly~~-----li~~Ll~~L~~~~q~~~~rt~Iq~l  237 (1233)
T KOG1824|consen  165 GTLLPN-FHLSILKCLLPQLQSP-RLAVRKKAITALGHLASSCNRDLYVE-----LIEHLLKGLSNRTQMSATRTYIQCL  237 (1233)
T ss_pred             cccCcc-hHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHhccCCCCchHHHHHHHHHH
Confidence            322221 4456777788888888 899999999999999973 3343333     344566555544 444444556667


Q ss_pred             HHhcCCCCHHHHHHHHHCCChHHHHhhc---CCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088          295 SNATSGGSNEQIKFLVSQGCIKPLCDLL---NCPDPRIVTVCLEGLENILKAGEAE  347 (431)
Q Consensus       295 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~v~~~al~~L~~l~~~~~~~  347 (431)
                      +.+++..+.+....+  ...++.+.++.   +..+.++++.++.++..++..+...
T Consensus       238 ~~i~r~ag~r~~~h~--~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e  291 (1233)
T KOG1824|consen  238 AAICRQAGHRFGSHL--DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE  291 (1233)
T ss_pred             HHHHHHhcchhhccc--chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence            777665443332221  23677777777   6778899999999999999988764

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=7.7e-06  Score=81.25  Aligned_cols=297  Identities=13%  Similarity=0.131  Sum_probs=203.1

Q ss_pred             HhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088           22 FHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG  101 (431)
Q Consensus        22 v~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  101 (431)
                      ..++....+++++.-|+.++.-+.. +.++-..+.+.|.+..|+++|.+ .|..|+.++.+|..+++... ......+.|
T Consensus      1777 ~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg 1853 (2235)
T KOG1789|consen 1777 ITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHG 1853 (2235)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcC
Confidence            3366667788999999998877766 78888899999999999999865 56788999999999987654 566777889


Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCC---CCCChhhHhhhHHHHHHhhcCC-------------ChHH------
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSN-------------DDEV------  159 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~i~~L~~lL~~~-------------~~~v------  159 (431)
                      ++..+..++-.+.++..+..++..++.+..+.   |...+.....+-..++..++++             ++++      
T Consensus      1854 ~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~ 1933 (2235)
T KOG1789|consen 1854 GLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVT 1933 (2235)
T ss_pred             chhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhH
Confidence            99999999878888999999999999998876   3333333333333444444422             2222      


Q ss_pred             HHHHHHHHHHhc--------cCC------hHHH------------------HHH------------HHhCcHHHHHHhcC
Q 014088          160 LTDACWALSYLS--------DGT------NDKI------------------QAV------------IEAGVCPRLVELLR  195 (431)
Q Consensus       160 ~~~a~~~L~~l~--------~~~------~~~~------------------~~~------------~~~~~i~~L~~ll~  195 (431)
                      +...-..+..+.        +++      ++..                  ..+            .-.++++.+..++.
T Consensus      1934 r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~ 2013 (2235)
T KOG1789|consen 1934 RQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMS 2013 (2235)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhc
Confidence            222222222221        100      0000                  000            01134555566665


Q ss_pred             CCCc--ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHH
Q 014088          196 HPSP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  273 (431)
Q Consensus       196 ~~~~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  273 (431)
                      .+.+  ......-.++..+....+.....+-..|.+|.++..+... +..+-..|.++|..|+.+ .-....+..-..+.
T Consensus      2014 ~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~ 2091 (2235)
T KOG1789|consen 2014 RPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCID 2091 (2235)
T ss_pred             CCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccch
Confidence            5433  2333344455555566666666667789999999999887 777778999999999876 66677887766777


Q ss_pred             HHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 014088          274 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC  324 (431)
Q Consensus       274 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~  324 (431)
                      .++..+...- ....-|+.+|..+......+.....+..|.++.|..+++.
T Consensus      2092 ~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2092 GIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred             hhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence            7777776543 3334888999888876655666666788999999999974

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=3.1e-08  Score=91.00  Aligned_cols=305  Identities=13%  Similarity=0.109  Sum_probs=198.6

Q ss_pred             HHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCCh
Q 014088           79 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDD  157 (431)
Q Consensus        79 a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~  157 (431)
                      ++.+|-.+++.....|.-+.+..+.+.|++.| ++++..+...+...++|+.-.... .......+++..+++++.+.|.
T Consensus       409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            34455556666666777788888899999999 777777777788888888765533 3344558999999999999999


Q ss_pred             HHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh---hhHHHhhc----CCh
Q 014088          158 EVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINH----QAL  229 (431)
Q Consensus       158 ~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~----~~l  229 (431)
                      .++....|.+.++..+.+...+ .+...-++..++.+.+++...++..+++++.|+......   .....++.    -+.
T Consensus       488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf  567 (743)
T COG5369         488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF  567 (743)
T ss_pred             hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence            9999999999999877654322 244556789999999999999999999999999874432   22222221    245


Q ss_pred             HHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccC-----------CHhHHHHHHHHHHHh
Q 014088          230 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNA-----------EFEIKKEAAWAISNA  297 (431)
Q Consensus       230 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~-----------~~~v~~~a~~aL~~l  297 (431)
                      +.+++.+... ++-...+.++.|.+++..+....+.+.+ ..++..+..++...           ...+-..-..+..++
T Consensus       568 k~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l  646 (743)
T COG5369         568 KRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL  646 (743)
T ss_pred             HHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence            6677777777 7777778899999998865555544443 34454444444221           111211222223333


Q ss_pred             cCCCCHHHHHHHHHCCCh--HHHHhhc---CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHH
Q 014088          298 TSGGSNEQIKFLVSQGCI--KPLCDLL---NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI  372 (431)
Q Consensus       298 ~~~~~~~~~~~l~~~~~l--~~L~~ll---~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  372 (431)
                      ..+..  ..+.    +..  +.+-.+=   ..++.++.....|.+.++....+..+..   ...-.-.+++.+.|.-+.+
T Consensus       647 ~e~~d--~f~r----~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt---ratveR~~iL~~~G~~e~l  717 (743)
T COG5369         647 SENSD--KFKR----LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT---RATVERIQILCANGIREWL  717 (743)
T ss_pred             ccccc--cccc----ceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc---hhhHHHHHHHHHccHHHHH
Confidence            33211  1111    111  1111111   1235567777888888755433322210   0111135778889999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHh
Q 014088          373 ENLQSHDNTEIYEKAVKILETY  394 (431)
Q Consensus       373 ~~l~~~~~~~v~~~a~~~l~~~  394 (431)
                      +.+++++++.|++++..+|+.+
T Consensus       718 ~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         718 VKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHhccCcHHHHHHHHHHHHhh
Confidence            9999999999999999998754

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=4.8e-06  Score=80.54  Aligned_cols=287  Identities=15%  Similarity=0.211  Sum_probs=160.8

Q ss_pred             CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHH
Q 014088           28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL  107 (431)
Q Consensus        28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~  107 (431)
                      +++.-++-.|+.+|++++.  ++...     .+.|-+-+++++.++.+|..|+.|...+....|+....     +++..-
T Consensus       118 s~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~  185 (866)
T KOG1062|consen  118 SSNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFR  185 (866)
T ss_pred             CCCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHH
Confidence            4556778888889999986  44433     46688888999999999999999999998777664333     344445


Q ss_pred             HHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC---------------CChHHHHHHHHHHHHhcc
Q 014088          108 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS---------------NDDEVLTDACWALSYLSD  172 (431)
Q Consensus       108 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~---------------~~~~v~~~a~~~L~~l~~  172 (431)
                      ++| .+.+.-+.-.++..+..+|...+.. ......+++.++..|++               ++|-++..+++.|+-+.+
T Consensus       186 ~lL-~ek~hGVL~~~l~l~~e~c~~~~~~-l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq  263 (866)
T KOG1062|consen  186 KLL-CEKHHGVLIAGLHLITELCKISPDA-LSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ  263 (866)
T ss_pred             HHH-hhcCCceeeeHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence            555 3444455555555555555543211 11112244444443331               245556666666666665


Q ss_pred             CChHHHHHHHHh--------------C---cHHHHHHhcC-CCCcccHHHHHHHHhHhhcCChhhhHHHh----------
Q 014088          173 GTNDKIQAVIEA--------------G---VCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCII----------  224 (431)
Q Consensus       173 ~~~~~~~~~~~~--------------~---~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~----------  224 (431)
                      ++++..+.+.+-              |   +.+.+..++. .+++..+..|+.+|+.+..+.+.+.+.+.          
T Consensus       264 ~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~  343 (866)
T KOG1062|consen  264 NDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQ  343 (866)
T ss_pred             CCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcC
Confidence            554433322110              0   0111111111 13455666666666666655543332211          


Q ss_pred             hc----CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCC
Q 014088          225 NH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  300 (431)
Q Consensus       225 ~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  300 (431)
                      +.    .-=..+++.|+++ +..+|+.|+..+..+...  .++..+     +..|+.+|...+.+.+...+.-+..++..
T Consensus       344 d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEk  415 (866)
T KOG1062|consen  344 DPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRVM-----VKELLEFLESSDEDFKADIASKIAELAEK  415 (866)
T ss_pred             CcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence            00    1123567777777 888888888777766543  334444     44588888877888888888888888765


Q ss_pred             CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088          301 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  342 (431)
Q Consensus       301 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~  342 (431)
                      -.|+.+=.      ++.+...++..-.-+...+...+.+++.
T Consensus       416 faP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa  451 (866)
T KOG1062|consen  416 FAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIA  451 (866)
T ss_pred             cCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHh
Confidence            54332222      4445555544433333333333444433

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.78  E-value=8.9e-07  Score=84.62  Aligned_cols=320  Identities=14%  Similarity=0.133  Sum_probs=194.9

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH--HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-
Q 014088           60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-  136 (431)
Q Consensus        60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-  136 (431)
                      ++..++..|+++++.+|++++..++.++.--..+  .+.+...|  ..|.+.| ....+++.-..+.++..+....... 
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEyl-geeypEvLgsILgAikaI~nvigm~k  876 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTK  876 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhc-CcccHHHHHHHHHHHHHHHHhccccc
Confidence            5567777889999999999999999987321111  11222222  2355556 5678888888888877776554222 


Q ss_pred             ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088          137 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  215 (431)
Q Consensus       137 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~  215 (431)
                      ...-..+++|.|..+|++...+++.++...++.++...++... ..+ ..+-=.|+.+|...+.++|+++...++.++..
T Consensus       877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~-aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka  955 (1172)
T KOG0213|consen  877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVS-AREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA  955 (1172)
T ss_pred             cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence            2223578999999999999999999999999999987765322 111 02223466777788889999999999988764


Q ss_pred             ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHH
Q 014088          216 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  295 (431)
Q Consensus       216 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  295 (431)
                      -..       ..++..|++-|+.. +-..|....-+++-.+..+..       -.++|.|+.=...++..|+.-.+.+++
T Consensus       956 IGP-------qdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGVLkals 1020 (1172)
T KOG0213|consen  956 IGP-------QDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNGVLKALS 1020 (1172)
T ss_pred             cCH-------HHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhHHHHHH
Confidence            322       24566677777655 444444333333333332111       126788887777788899999999999


Q ss_pred             HhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhh---------------hcCCCCCc-ch-
Q 014088          296 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEK---------------NMGNTGGV-NL-  358 (431)
Q Consensus       296 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~---------------~~~~~~~~-~~-  358 (431)
                      .+..........++..  +.+.|.+.+...|.--++.+..++..+.-......               .+..++.. +. 
T Consensus      1021 f~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~ 1098 (1172)
T KOG0213|consen 1021 FMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAF 1098 (1172)
T ss_pred             HHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHH
Confidence            8876443233333333  45556666666666556666666555543211100               00000000 00 


Q ss_pred             ------HHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088          359 ------FAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  400 (431)
Q Consensus       359 ------~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~  400 (431)
                            ++..+.-.-.++-+.+=+-|+...|++....+++.++-...+
T Consensus      1099 ~e~~eg~r~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~d 1146 (1172)
T KOG0213|consen 1099 DEAMEGLRVALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQD 1146 (1172)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccc
Confidence                  111111111122222335688899999999999887765544

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.77  E-value=5.6e-07  Score=81.65  Aligned_cols=271  Identities=19%  Similarity=0.203  Sum_probs=179.3

Q ss_pred             ccchhhhhhhhhhhhHHHHHhhhccCCCh--HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHH
Q 014088            3 CFDLRFECILISLFVDQFFFHCFFSCCFG--AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQA   79 (431)
Q Consensus         3 c~~~~~~~g~~~~~v~~~lv~~L~~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a   79 (431)
                      |...|.. |.+..+++      +..+++.  +++.+|.+.|..+..  .++++.+...| +..++.+-+. ..++.++..
T Consensus       173 CD~iR~~-~~lD~Llr------mf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~  242 (832)
T KOG3678|consen  173 CDAIRLD-GGLDLLLR------MFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSV  242 (832)
T ss_pred             hhHhhcc-chHHHHHH------HHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHH
Confidence            5555544 56666666      4444443  569999999998875  68899999887 6666666554 678899999


Q ss_pred             HHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC--CCChhhHhhhHHHHHHhhcCCCh
Q 014088           80 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDD  157 (431)
Q Consensus        80 ~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~lL~~~~~  157 (431)
                      +.+|.++..++.+....++..|++..++-.. +..++.+.+.++.+|.|++.+..  ..+.......-..|..+..+.|.
T Consensus       243 ~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDe  321 (832)
T KOG3678|consen  243 AGILEHMFKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDE  321 (832)
T ss_pred             HHHHHHHhhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHH
Confidence            9999999999988888899999999999888 56679999999999999998762  22233335566677777777888


Q ss_pred             HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhc
Q 014088          158 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT  237 (431)
Q Consensus       158 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~  237 (431)
                      -.+.+||.++..++.+.+-. ..+.++|-+..+-.++...++.--..   --...+.+.        ...-++.|+.+|+
T Consensus       322 l~R~~AClAV~vlat~KE~E-~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLd  389 (832)
T KOG3678|consen  322 LLRLHACLAVAVLATNKEVE-REVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLD  389 (832)
T ss_pred             HHHHHHHHHHhhhhhhhhhh-HHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhh
Confidence            89999999999999876533 33555666555555555544432111   001111111        1134778888888


Q ss_pred             ccchhhHHHHHHHHHHHhhc-CC-HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          238 QNYKKSIKKEACWTISNITA-GN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       238 ~~~~~~v~~~a~~~L~nl~~-~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                      +. .-+.+--+++-++-=+. .+ ......+.+-|.|+.|-++..+++.--..-|-.+|.-+
T Consensus       390 S~-R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  390 SN-RLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             cc-hhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            66 55555444444432221 11 12223444568899998888876544334444444444

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=2.2e-07  Score=85.97  Aligned_cols=309  Identities=17%  Similarity=0.098  Sum_probs=192.5

Q ss_pred             hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088           24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  103 (431)
Q Consensus        24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  103 (431)
                      ++. .++.++|..|+..+.|++..... ........+...+.++..+.+..++. +...+-.+..+-..-+..   .-.+
T Consensus        92 cf~-D~d~~vRyyACEsLYNiaKv~k~-~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~---tFsL  165 (675)
T KOG0212|consen   92 CFS-DQDSQVRYYACESLYNIAKVAKG-EVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESAS---TFSL  165 (675)
T ss_pred             hcc-CccceeeeHhHHHHHHHHHHhcc-CcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccccc---ccCH
Confidence            555 44569999999999999862111 11111123445566666665555544 333333332111000000   1124


Q ss_pred             HHHHHHhc---cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc---CChHH
Q 014088          104 MPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD---GTNDK  177 (431)
Q Consensus       104 ~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---~~~~~  177 (431)
                      +.++.+|.   ...++..|...+.-|..+-.-++.........+++.|..+|.+++.+++..+=.+++++..   +.|..
T Consensus       166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s  245 (675)
T KOG0212|consen  166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS  245 (675)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence            44444442   4558888888888777775553333333457899999999999999999877777766542   22221


Q ss_pred             HHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchh-hHHHHHHHHHHHhh
Q 014088          178 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNIT  256 (431)
Q Consensus       178 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~  256 (431)
                         +-....++.++..+.++++.++..|+.-+..+..-.+... ...-++++..+++.+.+. ++ .++..+..+-+.+.
T Consensus       246 ---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~  320 (675)
T KOG0212|consen  246 ---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLL  320 (675)
T ss_pred             ---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHH
Confidence               1222567888899999999999999988888877655332 233457788888888877 44 34444443322222


Q ss_pred             c--CCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 014088          257 A--GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  333 (431)
Q Consensus       257 ~--~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  333 (431)
                      .  .++...+. ++ ..++..+.+.+.+...+.|..++.-+..+-.....+...  ....+...|..-++..+.++...+
T Consensus       321 ~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tLsd~sd~vvl~~  397 (675)
T KOG0212|consen  321 KLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTLSDRSDEVVLLA  397 (675)
T ss_pred             HHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhhcCchhHHHHHH
Confidence            2  11222222 23 235777778888888888988888887776654322222  235678888889999999999999


Q ss_pred             HHHHHHHHHhhhh
Q 014088          334 LEGLENILKAGEA  346 (431)
Q Consensus       334 l~~L~~l~~~~~~  346 (431)
                      +..+.+++...+.
T Consensus       398 L~lla~i~~s~~~  410 (675)
T KOG0212|consen  398 LSLLASICSSSNS  410 (675)
T ss_pred             HHHHHHHhcCccc
Confidence            9999999876554

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=8.9e-06  Score=77.80  Aligned_cols=223  Identities=17%  Similarity=0.207  Sum_probs=147.5

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088           60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE  139 (431)
Q Consensus        60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  139 (431)
                      +-+-++.+|.+.-+-+|..|+.++..++...|+.   +..  .++.|.+.| .++|+.++..|+.+++.|++.+|..-..
T Consensus       145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr~--~FprL~EkL-eDpDp~V~SAAV~VICELArKnPknyL~  218 (877)
T KOG1059|consen  145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LRP--CFPRLVEKL-EDPDPSVVSAAVSVICELARKNPQNYLQ  218 (877)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hhh--hHHHHHHhc-cCCCchHHHHHHHHHHHHHhhCCccccc
Confidence            4577899999999999999999999999766653   222  578899999 8999999999999999999987543221


Q ss_pred             hH----------------------------------hhhHHHHHHhhcCCC-hHHHHHHHHHHH--HhccCChHHHHHHH
Q 014088          140 QT----------------------------------RPALPALERLIHSND-DEVLTDACWALS--YLSDGTNDKIQAVI  182 (431)
Q Consensus       140 ~~----------------------------------~~~i~~L~~lL~~~~-~~v~~~a~~~L~--~l~~~~~~~~~~~~  182 (431)
                      ..                                  ..+++.+..++++.. ..+...+..++.  +++.+.++....+ 
T Consensus       219 LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi-  297 (877)
T KOG1059|consen  219 LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI-  297 (877)
T ss_pred             ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH-
Confidence            10                                  112223333333221 233333444332  2232322221111 


Q ss_pred             HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH
Q 014088          183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ  262 (431)
Q Consensus       183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  262 (431)
                      + -.++.|-.++.+.++..+...+-+++.+....+...+.     .-+.+++.|.+. ++.+|..|+-.+.-+..  .++
T Consensus       298 q-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~gmVs--kkN  368 (877)
T KOG1059|consen  298 Q-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLYGMVS--KKN  368 (877)
T ss_pred             H-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHHHHhh--hhh
Confidence            1 24567777788899999999999999999877755542     346688999888 99999999988877654  244


Q ss_pred             HHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCH
Q 014088          263 IQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSN  303 (431)
Q Consensus       263 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~  303 (431)
                      ...+     +..|+.-+... ....|.+.+.-+..+|+.++.
T Consensus       369 l~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY  405 (877)
T KOG1059|consen  369 LMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQSNY  405 (877)
T ss_pred             HHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence            4443     33455544433 346777777777777766543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.75  E-value=1.4e-06  Score=83.39  Aligned_cols=256  Identities=12%  Similarity=0.093  Sum_probs=161.6

Q ss_pred             ccCCChHHHHHHHHHHHHHcCCChH--hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088           26 FSCCFGAVQFEAAWALTNIASGTSE--NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  103 (431)
Q Consensus        26 ~~s~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  103 (431)
                      +.+.++.+|.+|+..++.++.--..  .-+.+...|  -.|.+.|....+++.-..+.++..|.....-.+..---.+.+
T Consensus       808 Lnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dll  885 (1172)
T KOG0213|consen  808 LNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLL  885 (1172)
T ss_pred             hcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhc
Confidence            4567789999999998887641111  112233334  246677888888888777776666652110000000123578


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhH-hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088          104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  182 (431)
Q Consensus       104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  182 (431)
                      +.|..+| ++....+++++...+..++...+....... -.+-=-|+.+|.+-+.++|..+..+++.+++.-...     
T Consensus       886 PrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq-----  959 (1172)
T KOG0213|consen  886 PRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ-----  959 (1172)
T ss_pred             ccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH-----
Confidence            8888889 777899999999999999988755333322 223334677788889999999999999998654322     


Q ss_pred             HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC-HH
Q 014088          183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VN  261 (431)
Q Consensus       183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~  261 (431)
                        .++..|++-|...+-..|....-+++-.+..+..       ..++|.|++=...+ +..|+.-.+.+++.+...- .-
T Consensus       960 --dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtP-e~nVQnGVLkalsf~Feyigem 1029 (1172)
T KOG0213|consen  960 --DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEM 1029 (1172)
T ss_pred             --HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHH
Confidence              2334444444433322222222222222222211       14678888887778 8889999888888775421 11


Q ss_pred             HHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088          262 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       262 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      ...++.  -+.|.|-+.|.+.+.--|+-|+.++.+++.+.
T Consensus      1030 skdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1030 SKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred             hhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence            122222  25777788888889889999999999998764

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.75  E-value=2.7e-06  Score=79.14  Aligned_cols=311  Identities=13%  Similarity=0.099  Sum_probs=197.3

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  104 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  104 (431)
                      -..+++..-++.|+.+++.+..+..+.+..-+-..++|.+...+.++..-++..++||++.++.+.+.   .+-..+.+.
T Consensus       374 ni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~  450 (858)
T COG5215         374 NIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLV  450 (858)
T ss_pred             hccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCcccccc
Confidence            34577788999999999999875544443333357788888888888888999999999999865432   344445555


Q ss_pred             HHHHHhcc--ccchhHHHHHHHHHHHhhcCCCCCC---hhhHhhhHHH----HHHhhc--CCChHHHHHHHHHHHHhccC
Q 014088          105 PLLAQFNE--HAKLSMLRNATWTLSNFCRGKPQPL---FEQTRPALPA----LERLIH--SNDDEVLTDACWALSYLSDG  173 (431)
Q Consensus       105 ~l~~~l~~--~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~i~~----L~~lL~--~~~~~v~~~a~~~L~~l~~~  173 (431)
                      ..++....  ...+.+..+++|...|+..+-+...   ......+.+.    |++.-+  .++...|..+..+|+.+..-
T Consensus       451 ~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~  530 (858)
T COG5215         451 LEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILI  530 (858)
T ss_pred             HHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh
Confidence            54444321  2357778899999999988763221   1122333333    332222  34567788888888887765


Q ss_pred             ChHHHHHHHHhCcHHHHHH-----------hcCCCC----cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc
Q 014088          174 TNDKIQAVIEAGVCPRLVE-----------LLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ  238 (431)
Q Consensus       174 ~~~~~~~~~~~~~i~~L~~-----------ll~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  238 (431)
                      .++....+.. |+......           .+...+    .+++.+.+..|..+.+..+...+.. ...++..++++|.+
T Consensus       531 ~~d~V~~~~a-~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les  608 (858)
T COG5215         531 CPDAVSDILA-GFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILES  608 (858)
T ss_pred             cchhHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhc
Confidence            5543332211 22222222           222222    3455666666666665443322222 22456778888877


Q ss_pred             cchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHH
Q 014088          239 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL  318 (431)
Q Consensus       239 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L  318 (431)
                      .....+......++++++..-.+...... ..++|.|.+-++..+..+...|+..++.++..-+.+...+  ....+..|
T Consensus       609 ~~~t~~~~dV~~aIsal~~sl~e~Fe~y~-~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~L  685 (858)
T COG5215         609 TKPTTAFGDVYTAISALSTSLEERFEQYA-SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSL  685 (858)
T ss_pred             cCCchhhhHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHH
Confidence            73445566778889998875334343333 4589999999988899999999999999987554343333  34568889


Q ss_pred             HhhcCCC--CHHHHHHHHHHHHHHHHh
Q 014088          319 CDLLNCP--DPRIVTVCLEGLENILKA  343 (431)
Q Consensus       319 ~~ll~~~--~~~v~~~al~~L~~l~~~  343 (431)
                      +++++++  +.+++-..+.++..+...
T Consensus       686 vQ~lss~~~~R~lKPaiLSvFgDIAla  712 (858)
T COG5215         686 VQCLSSEATHRDLKPAILSVFGDIALA  712 (858)
T ss_pred             HHHhcChhhccccchHHHHHHHHHHHH
Confidence            9999865  456666666666666543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=1.3e-07  Score=86.97  Aligned_cols=264  Identities=14%  Similarity=0.172  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc
Q 014088           33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE  112 (431)
Q Consensus        33 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~  112 (431)
                      -...++.+|..++.+-.-.|..+.+..+.+.|+++|..++..+.-.+...++|....-.+.+..+.+.+++..+++++ .
T Consensus       405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~  483 (743)
T COG5369         405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-M  483 (743)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-h
Confidence            345566677777776677888899999999999999998888888888889998876667889999999999999999 6


Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCC-Chhh-HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH---HHHHHHHh---
Q 014088          113 HAKLSMLRNATWTLSNFCRGKPQP-LFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTND---KIQAVIEA---  184 (431)
Q Consensus       113 ~~~~~~~~~a~~~L~~l~~~~~~~-~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~---  184 (431)
                      +.|..++.+..|++.++..+.... +... .+-.+..++.+.+++.-.++..++..+.|+..+...   ....+++.   
T Consensus       484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~  563 (743)
T COG5369         484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR  563 (743)
T ss_pred             cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence            778899999999999998876333 3332 356788999999999999999999999999864332   11111111   


Q ss_pred             C-cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh-hcCChHHHHHHhc-------------------------
Q 014088          185 G-VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLT-------------------------  237 (431)
Q Consensus       185 ~-~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~-------------------------  237 (431)
                      . ++..++..+...+|-.....+.++.+++..++.....+. ....+..+.++|.                         
T Consensus       564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~  643 (743)
T COG5369         564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTI  643 (743)
T ss_pred             HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceee
Confidence            1 445566666777777777778888888877665444333 2233333333330                         


Q ss_pred             ---------------------------ccchhhHHHHHHHHHHHhhc---CC------HHHHHHHHHhCCHHHHHHHHcc
Q 014088          238 ---------------------------QNYKKSIKKEACWTISNITA---GN------VNQIQAIIEAGIIGPLVNLLLN  281 (431)
Q Consensus       238 ---------------------------~~~~~~v~~~a~~~L~nl~~---~~------~~~~~~l~~~~~i~~L~~ll~~  281 (431)
                                                 ...+++.-.+..|.+.|+..   +.      .+.++.+.+.|+-+.+..+-.+
T Consensus       644 v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~  723 (743)
T COG5369         644 VNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAK  723 (743)
T ss_pred             ecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhcc
Confidence                                       01134456677788877664   12      2556677777777766666666


Q ss_pred             CCHhHHHHHHHHHHHh
Q 014088          282 AEFEIKKEAAWAISNA  297 (431)
Q Consensus       282 ~~~~v~~~a~~aL~~l  297 (431)
                      .+..||+.+-.+|.++
T Consensus       724 ~Sl~vrek~~taL~~l  739 (743)
T COG5369         724 DSLIVREKIGTALENL  739 (743)
T ss_pred             CcHHHHHHHHHHHHhh
Confidence            7889999999999876

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=1.3e-05  Score=69.29  Aligned_cols=272  Identities=14%  Similarity=0.141  Sum_probs=180.5

Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014088          104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  183 (431)
Q Consensus       104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  183 (431)
                      ..++.++ .+.++.++..|..-+..++......-.......++.+.+++...++  ...|+.++.|++.+..-+ +.+++
T Consensus         6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~-~~ll~   81 (353)
T KOG2973|consen    6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR-KKLLQ   81 (353)
T ss_pred             HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH-HHHHH
Confidence            4567777 8889999999999999888772222222235678889999987776  778999999999876433 44555


Q ss_pred             hCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh------hcCChHHHHHHhcccchh-hHHHHHHHHHHHhh
Q 014088          184 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII------NHQALPCLLDLLTQNYKK-SIKKEACWTISNIT  256 (431)
Q Consensus       184 ~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~------~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~  256 (431)
                      . ++..++..+.++.......++..+.|++...+.......      +.+.+.........+.+. .--...+..++|++
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence            4 888888999888888999999999999987664433322      245555566666555331 22334556777887


Q ss_pred             cCCHHHHHHHHHhCC--HHHHHHHHccCCHhHHH-HHHHHHHHhcCCCCH---------HHHHHHHH-------------
Q 014088          257 AGNVNQIQAIIEAGI--IGPLVNLLLNAEFEIKK-EAAWAISNATSGGSN---------EQIKFLVS-------------  311 (431)
Q Consensus       257 ~~~~~~~~~l~~~~~--i~~L~~ll~~~~~~v~~-~a~~aL~~l~~~~~~---------~~~~~l~~-------------  311 (431)
                      .. +..+..+.+...  ...+..+-. .+..+|+ ..+.+|.|.+.....         ....+++-             
T Consensus       161 ~~-~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm  238 (353)
T KOG2973|consen  161 QF-EAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM  238 (353)
T ss_pred             hh-hhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence            65 455555555443  223333223 4566664 477888887654321         11111110             


Q ss_pred             CCChHHHHhhcC-----CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh-hcCCCHHHHH
Q 014088          312 QGCIKPLCDLLN-----CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEIYE  385 (431)
Q Consensus       312 ~~~l~~L~~ll~-----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~  385 (431)
                      .+.-.-| +++.     .+++.++...+++|.-++.-..             .+..+...|+.+.+..+ ...+++++++
T Consensus       239 ~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~-------------GRe~lR~kgvYpilRElhk~e~ded~~~  304 (353)
T KOG2973|consen  239 AKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRA-------------GREVLRSKGVYPILRELHKWEEDEDIRE  304 (353)
T ss_pred             hcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhH-------------hHHHHHhcCchHHHHHHhcCCCcHHHHH
Confidence            0112222 4443     3478899999999988875443             37889999999999998 4568999999


Q ss_pred             HHHHHHHHhcC
Q 014088          386 KAVKILETYWV  396 (431)
Q Consensus       386 ~a~~~l~~~~~  396 (431)
                      ....+.+.+..
T Consensus       305 ace~vvq~Lv~  315 (353)
T KOG2973|consen  305 ACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHh
Confidence            88888777666

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.71  E-value=1e-05  Score=79.60  Aligned_cols=362  Identities=14%  Similarity=0.152  Sum_probs=208.7

Q ss_pred             HHhhhccC-CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088           21 FFHCFFSC-CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS   99 (431)
Q Consensus        21 lv~~L~~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   99 (431)
                      +.+.+... +...++..++..++.+...-...--. ...+++..++.-+.++...+|..++.+|+.++...+.  .... 
T Consensus       136 l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--~ly~-  211 (1233)
T KOG1824|consen  136 LKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--DLYV-  211 (1233)
T ss_pred             HHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH--HHHH-
Confidence            33444332 33457888888777654422111111 2345667777777888899999999999999865432  2222 


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhh---cCCChHHHHHHHHHHHHhccCChH
Q 014088          100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI---HSNDDEVLTDACWALSYLSDGTND  176 (431)
Q Consensus       100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~  176 (431)
                       +.+..+++-|.....+...+.-..+|..+++....+.-......+|.+.+..   +..+.++|+.++.++..+....+.
T Consensus       212 -~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~  290 (1233)
T KOG1824|consen  212 -ELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK  290 (1233)
T ss_pred             -HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence             3677888888777777888888889999998765555555677888888888   677899999999999988776655


Q ss_pred             HHHHHHHhCcHHHHHHhcCCC----------------------------------CcccHHHHHHHHhHhhcCChhhhHH
Q 014088          177 KIQAVIEAGVCPRLVELLRHP----------------------------------SPSVLIPALRTVGNIVTGDDMQTQC  222 (431)
Q Consensus       177 ~~~~~~~~~~i~~L~~ll~~~----------------------------------~~~v~~~a~~~l~~l~~~~~~~~~~  222 (431)
                      .+..... .++..+++.+..+                                  ++.||+.|++++..+.....+....
T Consensus       291 ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~  369 (1233)
T KOG1824|consen  291 EILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPD  369 (1233)
T ss_pred             hhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHH
Confidence            4432222 3444555544310                                  2358999999998887554322211


Q ss_pred             H------------------hhcCChHHHHHHhcccc------------------------------------------hh
Q 014088          223 I------------------INHQALPCLLDLLTQNY------------------------------------------KK  242 (431)
Q Consensus       223 ~------------------~~~~~l~~L~~lL~~~~------------------------------------------~~  242 (431)
                      +                  +...++..++.+|.+..                                          ..
T Consensus       370 ~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~  449 (1233)
T KOG1824|consen  370 FYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSV  449 (1233)
T ss_pred             HHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccc
Confidence            1                  12223333333332110                                          00


Q ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHh
Q 014088          243 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  320 (431)
Q Consensus       243 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~  320 (431)
                      +.+..+...|..+....|+....- ....+|.++..+.+.  ....+..++..+.+....+.++...-.. ....+++..
T Consensus       450 kt~~~cf~lL~eli~~lp~~l~~~-~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~-~~Ls~~v~~  527 (1233)
T KOG1824|consen  450 KTRQGCFLLLTELINVLPGALAQH-IPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL-SALSPPVVA  527 (1233)
T ss_pred             cchhhHHHHHHHHHHhCcchhhhc-ccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch-hhhhhHHHH
Confidence            011111111111111111100000 011355566566554  4567778888888877766655433311 223444555


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh-hcCCCHHHHHHHHHHHHHhc
Q 014088          321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       321 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~  395 (431)
                      ....+=+++...|+.....+++.-...++.- .-..+++...+-..    .+..| ..+.+.+|+++|...+..+.
T Consensus       528 aV~d~fyKisaEAL~v~~~lvkvirpl~~~~-~~d~~~~v~~m~~~----tl~rL~a~d~DqeVkeraIscmgq~i  598 (1233)
T KOG1824|consen  528 AVGDPFYKISAEALLVCQQLVKVIRPLQPPS-SFDASPYVKTMYDC----TLQRLKATDSDQEVKERAISCMGQII  598 (1233)
T ss_pred             HhcCchHhhhHHHHHHHHHHHHHhcccCCCc-cCCCChhHHHHHHH----HHHHHhcccccHHHHHHHHHHHHHHH
Confidence            5556667888888888888877665544310 01122333332211    24444 46789999999988876643

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=8.5e-06  Score=70.37  Aligned_cols=264  Identities=14%  Similarity=0.110  Sum_probs=164.8

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  103 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  103 (431)
                      +..+.+|.+|..|+..+.+++..  ..+.... +...++.+.++++...+  .+.|+.++.|++.+. ..++.+++. .+
T Consensus        11 ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~~ll~~-~~   84 (353)
T KOG2973|consen   11 LLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRKKLLQD-LL   84 (353)
T ss_pred             HhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHHHHHHH-HH
Confidence            44577899999999999999874  2222222 23578889999987666  678899999998764 467777765 66


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhH-------hhhHHHHHHhhcCC-C-hHHHHHHHHHHHHhccCC
Q 014088          104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-------RPALPALERLIHSN-D-DEVLTDACWALSYLSDGT  174 (431)
Q Consensus       104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~i~~L~~lL~~~-~-~~v~~~a~~~L~~l~~~~  174 (431)
                      ..++..+ .++........|.+|+|+++..........       .++......+...+ + ..-..+.+..+.|+++..
T Consensus        85 k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~  163 (353)
T KOG2973|consen   85 KVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFE  163 (353)
T ss_pred             HHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhh
Confidence            6667766 566667888999999999998632221111       23333333333332 2 234566777888888765


Q ss_pred             hHHHHHHHHhCc--HHHHHHhcCCCCcccHHH-HHHHHhHhhcCChhhhHHHhh--cCChHHHHH---------------
Q 014088          175 NDKIQAVIEAGV--CPRLVELLRHPSPSVLIP-ALRTVGNIVTGDDMQTQCIIN--HQALPCLLD---------------  234 (431)
Q Consensus       175 ~~~~~~~~~~~~--i~~L~~ll~~~~~~v~~~-a~~~l~~l~~~~~~~~~~~~~--~~~l~~L~~---------------  234 (431)
                      ..+ ..+.....  .+.+..+ ...+..+|+. .+++|.|+|.....+. .+++  .++++.++-               
T Consensus       164 ~gR-~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee~sEEdm~~  240 (353)
T KOG2973|consen  164 AGR-KLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEELSEEDMAK  240 (353)
T ss_pred             hhh-hHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCccccCHHHHhc
Confidence            444 22333332  2223333 3356667655 7889999887655332 2332  123333322               


Q ss_pred             ------Hhc----ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcC
Q 014088          235 ------LLT----QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATS  299 (431)
Q Consensus       235 ------lL~----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  299 (431)
                            .|.    ..+++.+|..-+.+|.-+|.. ...++.+...|+.+.+-.+-... ++++++.+-....-+..
T Consensus       241 LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  241 LPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             CCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence                  221    112789999999999999886 56688888888777665555444 66666555554444433

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.65  E-value=2.7e-06  Score=79.84  Aligned_cols=330  Identities=12%  Similarity=0.115  Sum_probs=200.1

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCCh--HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH-HHHHHcC
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTS--ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-DLVLSNG  101 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~  101 (431)
                      ++.+..|.+|.+|+..++.++.--.  ..-+.+...|  ..|.+.|....+++.-..+.++..+..... .+ -.---.|
T Consensus       612 ~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~~mqpPi~~  688 (975)
T COG5181         612 LLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FRSMQPPISG  688 (975)
T ss_pred             HhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-ccccCCchhh
Confidence            3457779999999998887754111  1112222223  345666777888888887777777753211 00 0011246


Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhH-hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHH
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA  180 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  180 (431)
                      +++.|..+| ++...++..+....+..+|...|....... -.+-=-|+..|.+-+.++|.+|..+++.+++.-..+   
T Consensus       689 ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq---  764 (975)
T COG5181         689 ILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ---  764 (975)
T ss_pred             ccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH---
Confidence            888999999 777899999999999999988755433322 223335677788889999999999999988654322   


Q ss_pred             HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-C
Q 014088          181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-N  259 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~  259 (431)
                          .++..|++-|...+-..|....-+++-.+..+.       -..++|.|+.=...+ +..++.-.+.+++.+... .
T Consensus       765 ----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig  832 (975)
T COG5181         765 ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIG  832 (975)
T ss_pred             ----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHH
Confidence                234444444444333333332223333332221       124577777777777 888888888888877542 1


Q ss_pred             HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHH-HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088          260 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  338 (431)
Q Consensus       260 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~  338 (431)
                      .....++..  +.|.|-+.+.+.++--|+-|...+.+++.++..- ....++.  .+..|..-+-.+.|.+.....+++.
T Consensus       833 ~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~~~~Eg~e  908 (975)
T COG5181         833 QASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQSFDEGME  908 (975)
T ss_pred             HHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHHHHHHHHH
Confidence            222222222  5677777888889999999999999998875310 0011111  2233333333456666665555554


Q ss_pred             HHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          339 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       339 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      .+...                   +...-.+.-+++=+-|++..|+++....++..+-
T Consensus       909 ~~~~~-------------------lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv  947 (975)
T COG5181         909 SFATV-------------------LGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYV  947 (975)
T ss_pred             HHHHH-------------------hccHHHHHHHHHhccCchHHHHHHHHHHHhhhhh
Confidence            44322                   2211123335555789999999998888776544

>TIGR02270 conserved hypothetical protein

Probab=98.62  E-value=3.5e-05  Score=72.13  Aligned_cols=242  Identities=16%  Similarity=0.045  Sum_probs=154.8

Q ss_pred             CChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 014088           59 GAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL  137 (431)
Q Consensus        59 g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  137 (431)
                      .+++.++..|. .++..++..+++++...  +.+.         .+..++..| .+.++.++..+..+|..+-..     
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L-~d~~~~vr~aaa~ALg~i~~~-----  116 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVL-QAGPEGLCAGIQAALGWLGGR-----  116 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHh-cCCCHHHHHHHHHHHhcCCch-----
Confidence            35777888884 46677776665555422  2221         367888888 677788888888888765433     


Q ss_pred             hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088          138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  217 (431)
Q Consensus       138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  217 (431)
                           ...+.|..++.+.++.++..++.++.....            ...+.+..+|++.++.++..++++++.+-..  
T Consensus       117 -----~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       117 -----QAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             -----HHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence                 577888888888899998888877765221            2235677888888899999999999887532  


Q ss_pred             hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                               ..++.|...+.+. ++.||..|+++++.+..  ++         .+..+..+...........+..++...
T Consensus       178 ---------~a~~~L~~al~d~-~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ---------LSESTLRLYLRDS-DPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ---------cchHHHHHHHcCC-CHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                     3456677778888 89999999988877633  22         233444444444444444434444333


Q ss_pred             cCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc
Q 014088          298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS  377 (431)
Q Consensus       298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~  377 (431)
                         +.+         ..++.|..+++.+.  ++..++.++..+-                       ....++.|...++
T Consensus       237 ---~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg-----------------------~p~av~~L~~~l~  279 (410)
T TIGR02270       237 ---GGP---------DAQAWLRELLQAAA--TRREALRAVGLVG-----------------------DVEAAPWCLEAMR  279 (410)
T ss_pred             ---Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcC-----------------------CcchHHHHHHHhc
Confidence               211         24666777776533  6677777776431                       1223444555554


Q ss_pred             CCCHHHHHHHHHHHHHhcC
Q 014088          378 HDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       378 ~~~~~v~~~a~~~l~~~~~  396 (431)
                      ++.  +++.|...++....
T Consensus       280 d~~--~aR~A~eA~~~ItG  296 (410)
T TIGR02270       280 EPP--WARLAGEAFSLITG  296 (410)
T ss_pred             CcH--HHHHHHHHHHHhhC
Confidence            443  77777777777555

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.60  E-value=2.1e-06  Score=80.56  Aligned_cols=265  Identities=17%  Similarity=0.166  Sum_probs=175.0

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH--HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-
Q 014088           60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-  136 (431)
Q Consensus        60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-  136 (431)
                      ++..++.+|+++.+.+|..++...+.++.--..+  .+.+...|  ..|.+-| ....+++.-..+.+++.+....... 
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENL-GEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence            5567778889999999999999888886311100  12222222  2244445 4557888877777777665543222 


Q ss_pred             ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088          137 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  215 (431)
Q Consensus       137 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~  215 (431)
                      ...-..+++|.+..+|++...++..+....++.++.+.++.+. ..+ ..+-=.|+..|.+.+.++|++|...++.++..
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~-~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG-VREWMRICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC-HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence            2223478999999999999999999999999999988775432 111 02223466777888899999999999988764


Q ss_pred             ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHH
Q 014088          216 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  295 (431)
Q Consensus       216 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  295 (431)
                      -..+       .++..|++-|+.. +-..|....-+++-.+..+-       --.++|.|+.=...++..|+.-.+.+++
T Consensus       761 iGPq-------dvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvLkam~  825 (975)
T COG5181         761 IGPQ-------DVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVLKAMC  825 (975)
T ss_pred             cCHH-------HHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHHHHHH
Confidence            3222       4566677777665 44444444444443333110       1135777877777788899999999999


Q ss_pred             HhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088          296 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       296 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  345 (431)
                      .+.......-..++..  +.+.|-+.+...|+--++.+...+..+.-.+.
T Consensus       826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence            9876543333344333  45566667777888888888888888876654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.60  E-value=2.4e-05  Score=73.06  Aligned_cols=351  Identities=11%  Similarity=0.028  Sum_probs=220.7

Q ss_pred             HHhhhc-cCCChHHHHHHHHHHHHHcCCChHhHHHHHhC---C-------Ch-HHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088           21 FFHCFF-SCCFGAVQFEAAWALTNIASGTSENTRVVIDH---G-------AV-PIFVRLLSSPTDDVREQAVWALGNVAG   88 (431)
Q Consensus        21 lv~~L~-~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---g-------~i-~~L~~lL~~~~~~v~~~a~~~L~~l~~   88 (431)
                      +++.|- ....+.+|..|..+|.|-...+++.++.=...   |       -+ ...++.|.++.+..-..|...++.|+.
T Consensus        44 l~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~  123 (858)
T COG5215          44 LVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIAR  123 (858)
T ss_pred             HHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence            344442 34457899888888888654444433322211   1       11 233456778888888888888888874


Q ss_pred             CChHHHHHHHHcCChHHHHHHh----ccccchhHHHHHHHHHHHhhcCCCCCChhhHhh--hHHHHHHhhc-CCChHHHH
Q 014088           89 DSPKCRDLVLSNGALMPLLAQF----NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP--ALPALERLIH-SNDDEVLT  161 (431)
Q Consensus        89 ~~~~~~~~i~~~~~i~~l~~~l----~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~lL~-~~~~~v~~  161 (431)
                      -.       .-.+..+.++..+    ........+..++.++++.|............+  ++..+...++ .++..+|.
T Consensus       124 ~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRL  196 (858)
T COG5215         124 ME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRL  196 (858)
T ss_pred             hh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHH
Confidence            22       1123344444444    234566788999999999998852212222222  2223333344 34678999


Q ss_pred             HHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc
Q 014088          162 DACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY  240 (431)
Q Consensus       162 ~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~  240 (431)
                      .++.+|.+-..- .......--..=+++.....-+.++.+++..+..|+..+..-.-...+..++.-+.......++++ 
T Consensus       197 aaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~-  275 (858)
T COG5215         197 AALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ-  275 (858)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-
Confidence            999999873211 111111011112455566667788999999999999999876655666666666667777888888 


Q ss_pred             hhhHHHHHHHHHHHhhcCCHHHHHHHH----------------HhCCHHHHHHHHccC-------CHhHHHHHHHHHHHh
Q 014088          241 KKSIKKEACWTISNITAGNVNQIQAII----------------EAGIIGPLVNLLLNA-------EFEIKKEAAWAISNA  297 (431)
Q Consensus       241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~----------------~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~~l  297 (431)
                      ++++...+...-+.+|...-+.--...                -.+++|.|+++|...       ++.+...|..+|.-+
T Consensus       276 nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlf  355 (858)
T COG5215         276 NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLF  355 (858)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHH
Confidence            999999998877777753111111111                123789999999652       466777777777777


Q ss_pred             cCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc
Q 014088          298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS  377 (431)
Q Consensus       298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~  377 (431)
                      +.......    .+ .++..+-+-+.+++..-++.+.-+++.++......-           ...+. ...++.|..+.+
T Consensus       356 aq~~gd~i----~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~-----------lT~~V-~qalp~i~n~m~  418 (858)
T COG5215         356 AQLKGDKI----MR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDC-----------LTKIV-PQALPGIENEMS  418 (858)
T ss_pred             HHHhhhHh----HH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHH-----------HHhhH-HhhhHHHHHhcc
Confidence            65443221    11 255556667778888889999999999987654432           22222 445788888888


Q ss_pred             CCCHHHHHHHHHHHHHhcC
Q 014088          378 HDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       378 ~~~~~v~~~a~~~l~~~~~  396 (431)
                      ++.--+++.+.|.+...-+
T Consensus       419 D~~l~vk~ttAwc~g~iad  437 (858)
T COG5215         419 DSCLWVKSTTAWCFGAIAD  437 (858)
T ss_pred             cceeehhhHHHHHHHHHHH
Confidence            8888888888888766543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=9.7e-06  Score=77.91  Aligned_cols=310  Identities=15%  Similarity=0.078  Sum_probs=162.5

Q ss_pred             CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHH
Q 014088           28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL  107 (431)
Q Consensus        28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~  107 (431)
                      +++.-+|=.+++.|+.+-.  ++.-     ...+|.+...|++.+.-+|+.|..++..|-.....   .  -.++-+.+-
T Consensus       110 HPNEyiRG~TLRFLckLkE--~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L--~pDapeLi~  177 (948)
T KOG1058|consen  110 HPNEYIRGSTLRFLCKLKE--PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---L--IPDAPELIE  177 (948)
T ss_pred             CchHhhcchhhhhhhhcCc--HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---h--cCChHHHHH
Confidence            4555666666666666533  3322     25678888899999999999999999988654211   1  123455566


Q ss_pred             HHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc---CCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088          108 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQAVIEA  184 (431)
Q Consensus       108 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  184 (431)
                      ..|....|+..+++|...|...-..          ..+..+...+.   +-++.++......+...+...+....     
T Consensus       178 ~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----  242 (948)
T KOG1058|consen  178 SFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----  242 (948)
T ss_pred             HHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----
Confidence            6676778888999888766654322          22233322222   22345555555555555544433222     


Q ss_pred             CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh---------------------------------hcCChHH
Q 014088          185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII---------------------------------NHQALPC  231 (431)
Q Consensus       185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~---------------------------------~~~~l~~  231 (431)
                      ..++.+..+|.+.++.++..|..++-+++.... ..+...                                 -.+.+-.
T Consensus       243 ~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mD  321 (948)
T KOG1058|consen  243 RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMD  321 (948)
T ss_pred             HHHHHHHHHHhcCCchhhhhhcceEEEccCCHH-HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence            344555555555555555555544444443221 111000                                 0123333


Q ss_pred             HHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc-----C------CHhHHHHHHHHHHHhcCC
Q 014088          232 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-----A------EFEIKKEAAWAISNATSG  300 (431)
Q Consensus       232 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-----~------~~~v~~~a~~aL~~l~~~  300 (431)
                      ++.+|..+ +-++|..++.....|+.+           .-+..++++|+.     .      +.+-|+.-+.++...+.+
T Consensus       322 vLrvLss~-dldvr~Ktldi~ldLvss-----------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~  389 (948)
T KOG1058|consen  322 VLRVLSSP-DLDVRSKTLDIALDLVSS-----------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK  389 (948)
T ss_pred             HHHHcCcc-cccHHHHHHHHHHhhhhh-----------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence            44444444 555555555444444331           112222332221     0      123455555566555544


Q ss_pred             CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH-HHHhhcCC
Q 014088          301 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSHD  379 (431)
Q Consensus       301 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~~  379 (431)
                      -. +..     ..+++.|++.+.+.++.....++..+...++...+.+            ..+     +++ +..+-.-.
T Consensus       390 Fp-~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr------------~~i-----i~~l~~~~~~ir  446 (948)
T KOG1058|consen  390 FP-EVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR------------ASI-----IEKLLETFPQIR  446 (948)
T ss_pred             Ch-HHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH------------HHH-----HHHHHHhhhhhc
Confidence            32 222     2357777888877777766666666666665544322            111     111 22222234


Q ss_pred             CHHHHHHHHHHHHHhcCCCCC
Q 014088          380 NTEIYEKAVKILETYWVEEDE  400 (431)
Q Consensus       380 ~~~v~~~a~~~l~~~~~~e~~  400 (431)
                      ..++.+-|.|++..|...+++
T Consensus       447 S~ki~rgalwi~GeYce~~~~  467 (948)
T KOG1058|consen  447 SSKICRGALWILGEYCEGLSE  467 (948)
T ss_pred             ccccchhHHHHHHHHHhhhHH
Confidence            556778888888888877764

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.56  E-value=1.1e-05  Score=69.81  Aligned_cols=269  Identities=16%  Similarity=0.146  Sum_probs=163.5

Q ss_pred             hHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 014088          117 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH  196 (431)
Q Consensus       117 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  196 (431)
                      +.+..-..++..+....+........-+...|-++++.-++-.+.-|.+++.++......+.....+...-..++.++++
T Consensus       123 ~~k~~f~~vf~~~~~~~~~~v~~~~~LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n  202 (432)
T COG5231         123 KHKKEFLSVFKQMLKDNTSYVESNYLLFLEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQN  202 (432)
T ss_pred             HHHHHHHHHHHHHccCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHh
Confidence            33444444555555443322222222233344455555566678889999999987765554444455566677888876


Q ss_pred             --CCcccHHHHHHHHhHhhcCChhhhHHHh-hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC-HHHHHHHHHhCCH
Q 014088          197 --PSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGII  272 (431)
Q Consensus       197 --~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i  272 (431)
                        ....++..++.+++.++.... ..+-+- -...+..++++.+.....++-+-++..+.|++... ...+..+.-.|-+
T Consensus       203 ~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~  281 (432)
T COG5231         203 YVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDI  281 (432)
T ss_pred             hhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcch
Confidence              456788889999999987543 222111 22456777888877767888888999999999843 3444444444434


Q ss_pred             HHHHHHHc-cC--CHhHHHHHHHHHHHhcC---------------------CCC--------HHHHHHHHHC--CChHHH
Q 014088          273 GPLVNLLL-NA--EFEIKKEAAWAISNATS---------------------GGS--------NEQIKFLVSQ--GCIKPL  318 (431)
Q Consensus       273 ~~L~~ll~-~~--~~~v~~~a~~aL~~l~~---------------------~~~--------~~~~~~l~~~--~~l~~L  318 (431)
                      .+.++.|. .+  +.+++...-..=..+-.                     .++        ..+...+.+.  .++..|
T Consensus       282 ~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L  361 (432)
T COG5231         282 SKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVL  361 (432)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHH
Confidence            44445443 33  44443222111111111                     000        1233444433  347778


Q ss_pred             HhhcCCCCHH-HHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088          319 CDLLNCPDPR-IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       319 ~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  397 (431)
                      ..+++..++. ....|+.-+..+++....            ....+...|+.+.|.+|++|++++|+-.|..+++.+.+.
T Consensus       362 ~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~  429 (432)
T COG5231         362 KKYLQSNNPNTWICVACSDIFQLVRASPE------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS  429 (432)
T ss_pred             HHHHhcCCCCceEeeeHhhHHHHHHhCch------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence            8888776554 445566666666665433            477788999999999999999999999999999887654


Q ss_pred             C
Q 014088          398 E  398 (431)
Q Consensus       398 e  398 (431)
                      +
T Consensus       430 ~  430 (432)
T COG5231         430 E  430 (432)
T ss_pred             h
Confidence            3

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=7.7e-05  Score=70.76  Aligned_cols=289  Identities=17%  Similarity=0.194  Sum_probs=182.2

Q ss_pred             HHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHH-HHHHHHHhcCCC-hHHHHH
Q 014088           19 QFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ-AVWALGNVAGDS-PKCRDL   96 (431)
Q Consensus        19 ~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~-a~~~L~~l~~~~-~~~~~~   96 (431)
                      +.+.+++. +.+..-+..+.+.+..+..+.  ....+.+.+++..+.+..++.....++. ++.+....+..- +.....
T Consensus       137 ~~l~~ll~-~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPy  213 (569)
T KOG1242|consen  137 ELLLELLT-STKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPY  213 (569)
T ss_pred             HHHHHHhc-cccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCch
Confidence            33444555 566678888888888887643  3445666788888999888855444443 333333322111 111111


Q ss_pred             HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014088           97 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  176 (431)
Q Consensus        97 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  176 (431)
                      +..  .++.++... .+..+.+|..+..+...+...-+   .....-++|.++.-+..........++..++.++...+.
T Consensus       214 iv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~---~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~  287 (569)
T KOG1242|consen  214 IVP--ILPSILTNF-GDKINKVREAAVEAAKAIMRCLS---AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK  287 (569)
T ss_pred             HHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHHhcC---cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH
Confidence            111  344455555 46678888888888777765531   112234555555555545778888999999999988876


Q ss_pred             HHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh-hhHHHh------------------------------h
Q 014088          177 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCII------------------------------N  225 (431)
Q Consensus       177 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~------------------------------~  225 (431)
                      ... ..-..++|.+...|-+..++++..+..++.+++..-+. .++.++                              +
T Consensus       288 qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~  366 (569)
T KOG1242|consen  288 QLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVD  366 (569)
T ss_pred             HHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeec
Confidence            655 45558999999999999999999999999888743211 111111                              1


Q ss_pred             cCChHHHHHHh----cccchhhHHHHHHHHHHHhhc--CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          226 HQALPCLLDLL----TQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       226 ~~~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      ...+..++.++    ... +...++.++.++.|++.  .++......+.. ++|.+-..+.+..+++|..+.++|+.+..
T Consensus       367 ~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  367 APSLALMVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRAVAARALGALLE  444 (569)
T ss_pred             chhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence            11233333333    333 56778899999999997  356655555543 67777777777789999999999998876


Q ss_pred             CCCHHHHHHHHHCCChHHHHhhcCC
Q 014088          300 GGSNEQIKFLVSQGCIKPLCDLLNC  324 (431)
Q Consensus       300 ~~~~~~~~~l~~~~~l~~L~~ll~~  324 (431)
                      .-..   ..  ..+.++.+.+.+..
T Consensus       445 ~~g~---~~--f~d~~p~l~e~~~~  464 (569)
T KOG1242|consen  445 RLGE---VS--FDDLIPELSETLTS  464 (569)
T ss_pred             HHHh---hc--ccccccHHHHhhcc
Confidence            4321   11  15566667666653

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.53  E-value=7.3e-05  Score=69.19  Aligned_cols=336  Identities=16%  Similarity=0.071  Sum_probs=203.5

Q ss_pred             HHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccc-cchhHHH
Q 014088           42 TNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLR  120 (431)
Q Consensus        42 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~  120 (431)
                      ..+....+..+..+.-....+.+..++-+++.++|..+.+++..+..+... -..+.+.+.-..++..|..+ .+..-|.
T Consensus         8 v~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~   86 (371)
T PF14664_consen    8 VDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVERE   86 (371)
T ss_pred             HHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHH
Confidence            333334444444444334455555444444599999999999998887654 45556666555566666443 3556678


Q ss_pred             HHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcc
Q 014088          121 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS  200 (431)
Q Consensus       121 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  200 (431)
                      +|+..+..+..-.... ...-.+++..++.+.++.+...+..|+.++..++-.+|+   .+...|++..+.+.+.++..+
T Consensus        87 QALkliR~~l~~~~~~-~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~  162 (371)
T PF14664_consen   87 QALKLIRAFLEIKKGP-KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFS  162 (371)
T ss_pred             HHHHHHHHHHHhcCCc-ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHh
Confidence            9999998888764222 123467889999999999999999999999999988764   477889999999998876666


Q ss_pred             cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc------chh--hHHHHHHHHHHHhhcCCHHHHHHHHHh-CC
Q 014088          201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN------YKK--SIKKEACWTISNITAGNVNQIQAIIEA-GI  271 (431)
Q Consensus       201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~  271 (431)
                      +....+.++..+..... .++.+...--++.++.-+.+.      .+.  +--..+..++..+-+.=+.......+. ..
T Consensus       163 ~~~~l~~~lL~lLd~p~-tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~  241 (371)
T PF14664_consen  163 ISESLLDTLLYLLDSPR-TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRG  241 (371)
T ss_pred             HHHHHHHHHHHHhCCcc-hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchH
Confidence            77788888888876543 444343323344444444322      012  233344455555544322211111121 46


Q ss_pred             HHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHH------CCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088          272 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS------QGCI---KPLCDLLNCPDPRIVTVCLEGLENILK  342 (431)
Q Consensus       272 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~------~~~l---~~L~~ll~~~~~~v~~~al~~L~~l~~  342 (431)
                      +..|++.|..+++++|...+..+..+..-..+.....+..      .+-.   ..+.+-...... ....-..-=.+++.
T Consensus       242 lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~-~~~~~~~~~~~l~~  320 (371)
T PF14664_consen  242 LKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKS-ILPHRSSKRPNLVN  320 (371)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccccc-ccCccccccccHHH
Confidence            8889999999999999999999999987664433222211      0111   000000000000 00000000011111


Q ss_pred             hhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 014088          343 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYW  395 (431)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~  395 (431)
                      ..-.           .....+.++|.++.|.++..+. ++.+..+|.-+|..++
T Consensus       321 ~y~a-----------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  321 HYLA-----------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHH-----------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            1110           0234567799999999997655 9999999999888765

>TIGR02270 conserved hypothetical protein

Probab=98.50  E-value=7.2e-05  Score=70.04  Aligned_cols=240  Identities=17%  Similarity=0.039  Sum_probs=167.2

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS   99 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   99 (431)
                      .++..|...+++.++..++.++.....  +         .++..|+..|.+.++.++..+...|+.+-.  +        
T Consensus        58 ~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~--------  116 (410)
T TIGR02270        58 LLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R--------  116 (410)
T ss_pred             HHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h--------
Confidence            445566556667777766665543221  1         138999999999999999999999987632  1        


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088          100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ  179 (431)
Q Consensus       100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  179 (431)
                       ...+.|+..| .+.++.++..++.++...-.           ...+.+..+|++.++.++..++.+++.+...      
T Consensus       117 -~a~~~L~~~L-~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------  177 (410)
T TIGR02270       117 -QAEPWLEPLL-AASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR------  177 (410)
T ss_pred             -HHHHHHHHHh-cCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------
Confidence             2456788888 77889999888877776221           2456788889999999999999999987643      


Q ss_pred             HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC
Q 014088          180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  259 (431)
Q Consensus       180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  259 (431)
                           ..++.|...+.+.++.|+..++..++.+-.  +         ..+..+....... ....+..+..++...  ..
T Consensus       178 -----~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~--~~  238 (410)
T TIGR02270       178 -----LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA--GG  238 (410)
T ss_pred             -----cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC--Cc
Confidence                 344567777999999999999999977633  2         1234455534333 344444444344333  21


Q ss_pred             HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 014088          260 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN  339 (431)
Q Consensus       260 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~  339 (431)
                      +         ..++.|..+++++.  ++..++++++.+-...            .++.|+..+..  +.+...|-+++..
T Consensus       239 ~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~------------av~~L~~~l~d--~~~aR~A~eA~~~  293 (410)
T TIGR02270       239 P---------DAQAWLRELLQAAA--TRREALRAVGLVGDVE------------AAPWCLEAMRE--PPWARLAGEAFSL  293 (410)
T ss_pred             h---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCcc------------hHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            2         35777888888754  8999999999885432            57788887763  3488888888888


Q ss_pred             HHHh
Q 014088          340 ILKA  343 (431)
Q Consensus       340 l~~~  343 (431)
                      |.-.
T Consensus       294 ItG~  297 (410)
T TIGR02270       294 ITGM  297 (410)
T ss_pred             hhCC
Confidence            7643

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=8.4e-06  Score=81.00  Aligned_cols=225  Identities=15%  Similarity=0.126  Sum_probs=165.5

Q ss_pred             HHHHHHHHHhhcCCCCCChh-hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-C
Q 014088          120 RNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-P  197 (431)
Q Consensus       120 ~~a~~~L~~l~~~~~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~  197 (431)
                      ..|+..|+.+..-.+-.... .--|++|.++++|+++-.+++.-...+...+..-++.....+++.++-..+++.|.. .
T Consensus       488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~  567 (1387)
T KOG1517|consen  488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQ  567 (1387)
T ss_pred             HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcC
Confidence            34555666655544333322 336899999999999999999988888888776666555557776766777777766 2


Q ss_pred             --CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHH
Q 014088          198 --SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL  275 (431)
Q Consensus       198 --~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L  275 (431)
                        +++-+.-++.+|+.++.+.....+...+.+++...++.|.+++.+-+|..++-+|+.|=...++.+-.-.+.+..+.|
T Consensus       568 ~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL  647 (1387)
T KOG1517|consen  568 AIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKL  647 (1387)
T ss_pred             CCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHH
Confidence              346778899999999998877778889999999999999885368899999999999988766655555667789999


Q ss_pred             HHHHccCCHhHHHHHHHHHHHhcCCC---CHHHHHHH------------HHCCCh---HHHHhhcCCCCHHHHHHHHHHH
Q 014088          276 VNLLLNAEFEIKKEAAWAISNATSGG---SNEQIKFL------------VSQGCI---KPLCDLLNCPDPRIVTVCLEGL  337 (431)
Q Consensus       276 ~~ll~~~~~~v~~~a~~aL~~l~~~~---~~~~~~~l------------~~~~~l---~~L~~ll~~~~~~v~~~al~~L  337 (431)
                      +.+|.++-++||..|+.||+.+..+.   .+++....            .+..+.   -.+..+++...+-++.....+|
T Consensus       648 ~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~l  727 (1387)
T KOG1517|consen  648 ILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVAL  727 (1387)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHH
Confidence            99999999999999999999999864   12222211            111112   1455566677777777776777


Q ss_pred             HHHHHhh
Q 014088          338 ENILKAG  344 (431)
Q Consensus       338 ~~l~~~~  344 (431)
                      ..+....
T Consensus       728 s~~~~g~  734 (1387)
T KOG1517|consen  728 SHFVVGY  734 (1387)
T ss_pred             HHHHHhh
Confidence            6665443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=6.6e-05  Score=72.98  Aligned_cols=219  Identities=16%  Similarity=0.205  Sum_probs=150.0

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 014088          112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  191 (431)
Q Consensus       112 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  191 (431)
                      ++.+.-+...|+.+|++++..      .+...+.|-+.+++++.++-+|+.|+.|...+....++..+     .+++...
T Consensus       117 ~s~nq~vVglAL~alg~i~s~------EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-----~f~~~~~  185 (866)
T KOG1062|consen  117 NSSNQYVVGLALCALGNICSP------EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-----HFVIAFR  185 (866)
T ss_pred             cCCCeeehHHHHHHhhccCCH------HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----HhhHHHH
Confidence            455666777788888887754      34467889999999999999999999999999888777666     4567778


Q ss_pred             HhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhc----cc----------chhhHHHHHHHHHHHhhc
Q 014088          192 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT----QN----------YKKSIKKEACWTISNITA  257 (431)
Q Consensus       192 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~----------~~~~v~~~a~~~L~nl~~  257 (431)
                      .+|.+.+..|....+..+..+|..++.....+-+  +++.++..|+    ..          +++-++..+++.|+-+..
T Consensus       186 ~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq  263 (866)
T KOG1062|consen  186 KLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ  263 (866)
T ss_pred             HHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence            8898888999999999999999876654443333  5555555553    11          167889999999888887


Q ss_pred             CCHHHHHHHHH--------------hC--C-HHHHHHHHc-cCCHhHHHHHHHHHHHhcCCCCHHHHHH--------HHH
Q 014088          258 GNVNQIQAIIE--------------AG--I-IGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKF--------LVS  311 (431)
Q Consensus       258 ~~~~~~~~l~~--------------~~--~-i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~--------l~~  311 (431)
                      ++++....|-+              .|  + .+.+..++. .++..+|..|+.+|+.+..+.. .+.++        .++
T Consensus       264 ~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d-~NirYvaLn~L~r~V~  342 (866)
T KOG1062|consen  264 NDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD-NNIRYVALNMLLRVVQ  342 (866)
T ss_pred             CCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc-cceeeeehhhHHhhhc
Confidence            65554433321              00  1 111112221 2356788888888888877653 22222        111


Q ss_pred             C--CC----hHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088          312 Q--GC----IKPLCDLLNCPDPRIVTVCLEGLENILKAG  344 (431)
Q Consensus       312 ~--~~----l~~L~~ll~~~~~~v~~~al~~L~~l~~~~  344 (431)
                      .  ..    -..++++++.+|..++..|++.+..+....
T Consensus       343 ~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~  381 (866)
T KOG1062|consen  343 QDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES  381 (866)
T ss_pred             CCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc
Confidence            1  11    345788888889999999999888887543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=6e-05  Score=65.79  Aligned_cols=266  Identities=14%  Similarity=0.170  Sum_probs=188.1

Q ss_pred             HHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh----HHHHHHHHhCcHHHHHHhcCCC
Q 014088          122 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN----DKIQAVIEAGVCPRLVELLRHP  197 (431)
Q Consensus       122 a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~i~~L~~ll~~~  197 (431)
                      ++.+|..|.+....  ........|.|-.-|..++..++.-+|..++.+..+.+    ..+..++..++++.++.++-.+
T Consensus        63 cVscLERLfkakeg--ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge  140 (524)
T KOG4413|consen   63 CVSCLERLFKAKEG--AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE  140 (524)
T ss_pred             HHHHHHHHHhhccc--hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence            55666666554311  11223455666666777888999999999999887655    2334456789999999999999


Q ss_pred             CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHH--HhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHH
Q 014088          198 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD--LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL  275 (431)
Q Consensus       198 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~--lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L  275 (431)
                      +.++...+...+..++.... ....++.+.....+-.  +-... ++-+|......+..+..-+++...++..+|++..|
T Consensus       141 ddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlL  218 (524)
T KOG4413|consen  141 DDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLL  218 (524)
T ss_pred             cHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence            99999999999999988654 5556777776665433  33333 67778888888888888889999999999999999


Q ss_pred             HHHHcc-CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 014088          276 VNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGN  352 (431)
Q Consensus       276 ~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~  352 (431)
                      ..-++. ++.-|+.+++.....++...  ...+++.+.|+++.+.+++..  .+|.-...++-...+++.+.......  
T Consensus       219 eaElkGteDtLVianciElvteLaete--HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvs--  294 (524)
T KOG4413|consen  219 EAELKGTEDTLVIANCIELVTELAETE--HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVS--  294 (524)
T ss_pred             HHHhcCCcceeehhhHHHHHHHHHHHh--hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcC--
Confidence            888877 58889999999999998743  556777789999999999974  45555566777777766443322210  


Q ss_pred             CCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088          353 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  400 (431)
Q Consensus       353 ~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~  400 (431)
                         ....+..+.  -+++...+..+..+++..+.|.+.+..+=+.-+.
T Consensus       295 ---eeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGSnteG  337 (524)
T KOG4413|consen  295 ---EEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG  337 (524)
T ss_pred             ---HHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch
Confidence               000122111  1344555566778888888888888766554443

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.43  E-value=7.4e-06  Score=61.74  Aligned_cols=154  Identities=10%  Similarity=0.050  Sum_probs=122.8

Q ss_pred             ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHH
Q 014088          228 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK  307 (431)
Q Consensus       228 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  307 (431)
                      .+..|+.-.....+.+.++....-|+|++.. |.+-..+.+.+++..+++.+..++..+++.++..|+|+|..  +...+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d--~~n~~   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD--KTNAK   93 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC--hHHHH
Confidence            3455665555555788899988889999876 77788888999999999999999999999999999999975  47888


Q ss_pred             HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 014088          308 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  387 (431)
Q Consensus       308 ~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a  387 (431)
                      .+.+.+.++.++..++++...+...++..+..+......            .+..+.....++.+.+...+.+.+.+..|
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt------------~r~ell~p~Vv~~v~r~~~s~s~~~rnLa  161 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT------------ERDELLSPAVVRTVQRWRESKSHDERNLA  161 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc------------hhHHhccHHHHHHHHHHHHHhhHHHHHHH
Confidence            889999999999999998888888777777655433222            35666666677788888777778888888


Q ss_pred             HHHHHHhcC
Q 014088          388 VKILETYWV  396 (431)
Q Consensus       388 ~~~l~~~~~  396 (431)
                      ...++....
T Consensus       162 ~~fl~~~~~  170 (173)
T KOG4646|consen  162 SAFLDKHVH  170 (173)
T ss_pred             HHHHHhhcc
Confidence            888876653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.42  E-value=2.7e-05  Score=78.70  Aligned_cols=267  Identities=16%  Similarity=0.087  Sum_probs=173.5

Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC----ChHHH
Q 014088          103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG----TNDKI  178 (431)
Q Consensus       103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~  178 (431)
                      +..+...++.-.....+..|+..|..++...  ........++|.++.+++++...||..|+.+|..+...    ++...
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i--~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da  501 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYI--DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA  501 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc--chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence            4555555544446678889999999998873  34455678999999999999999999999999876532    22222


Q ss_pred             HHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChh---hhHHHhhc-------------------------CCh
Q 014088          179 QAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM---QTQCIINH-------------------------QAL  229 (431)
Q Consensus       179 ~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~-------------------------~~l  229 (431)
                      ..+.+ =++|.|-.++.+ ....+|..-+.+|+.|+...-.   ..+.+-..                         .+-
T Consensus       502 niF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~  580 (1431)
T KOG1240|consen  502 NIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE  580 (1431)
T ss_pred             hhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence            32333 467778788777 5556777777777777632110   00000000                         112


Q ss_pred             HHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHH
Q 014088          230 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL  309 (431)
Q Consensus       230 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l  309 (431)
                      .....++.++ ++-||..-+..|+-||.--   .+.=.+.-+++.|+..|++.++.+|..-...|.-++..-.+.    -
T Consensus       581 ~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FF---Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r----s  652 (1431)
T KOG1240|consen  581 QMVSSLLSDS-PPIVKRALLESIIPLCVFF---GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR----S  652 (1431)
T ss_pred             HHHHHHHcCC-chHHHHHHHHHHHHHHHHh---hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee----e
Confidence            2334445555 5666766666666665310   000011235888999999999999877777766554322111    1


Q ss_pred             HHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHH
Q 014088          310 VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK  389 (431)
Q Consensus       310 ~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~  389 (431)
                      ++..+++.|.+-+...++.+...|+++|..+++.+--.+.              .=...++.+..++.|||.=+|+.+..
T Consensus       653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~--------------~v~~i~~~v~PlL~hPN~WIR~~~~~  718 (1431)
T KOG1240|consen  653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP--------------AVKDILQDVLPLLCHPNLWIRRAVLG  718 (1431)
T ss_pred             HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH--------------HHHHHHHhhhhheeCchHHHHHHHHH
Confidence            3455788888899999999999999999999987653321              11233555677899999999999988


Q ss_pred             HHHHh
Q 014088          390 ILETY  394 (431)
Q Consensus       390 ~l~~~  394 (431)
                      +|...
T Consensus       719 iI~~~  723 (1431)
T KOG1240|consen  719 IIAAI  723 (1431)
T ss_pred             HHHHH
Confidence            87553

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=2.9e-05  Score=73.72  Aligned_cols=251  Identities=15%  Similarity=0.146  Sum_probs=160.5

Q ss_pred             HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh------HHHH
Q 014088          106 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN------DKIQ  179 (431)
Q Consensus       106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~------~~~~  179 (431)
                      +..+. .+.|..++..|+..|..|....     ..-.-.....++++.+.+..||..|+..+.-.+.-.+      ..-.
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            44444 6777888888888888777642     1123456778899999999999998666654432221      1111


Q ss_pred             HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh--hc
Q 014088          180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI--TA  257 (431)
Q Consensus       180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~  257 (431)
                      .+.+ .++..+...+++.+..||..|.++|+.+-.-+++.....++.+++..+-..=.    .  .+......++-  +.
T Consensus       277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~----a--hkrpk~l~s~GewSs  349 (823)
T KOG2259|consen  277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT----A--HKRPKALYSSGEWSS  349 (823)
T ss_pred             hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh----c--ccchHHHHhcCCccc
Confidence            2333 57788889999999999999999999987655555554444333332211110    0  01111111111  11


Q ss_pred             -----------CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 014088          258 -----------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD  326 (431)
Q Consensus       258 -----------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~  326 (431)
                                 ...+....++.+|.--.++.-+.++-.+||..|...++.++.... .....     .++.|+++++.+.
T Consensus       350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP-~FA~~-----aldfLvDMfNDE~  423 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP-GFAVR-----ALDFLVDMFNDEI  423 (823)
T ss_pred             CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC-CcHHH-----HHHHHHHHhccHH
Confidence                       112223455667777777777888888999999999999998653 22222     5889999999888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088          327 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  393 (431)
Q Consensus       327 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  393 (431)
                      ..++..|+.+|..+.....-.                  ...++.+..-+.+.++++|+....+|..
T Consensus       424 ~~VRL~ai~aL~~Is~~l~i~------------------eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  424 EVVRLKAIFALTMISVHLAIR------------------EEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             HHHHHHHHHHHHHHHHHheec------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            899999999999887763321                  2234445555666677777776666654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.41  E-value=7.7e-06  Score=82.43  Aligned_cols=300  Identities=16%  Similarity=0.128  Sum_probs=189.8

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC---CChHHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG---DSPKCRDL   96 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---~~~~~~~~   96 (431)
                      .+..++..-...+.+..|+..|..++....+.   ..=..++|.++.++.++...+|..|+.+|..+..   +-+..-..
T Consensus       426 ~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan  502 (1431)
T KOG1240|consen  426 VLTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN  502 (1431)
T ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence            34445554456788999999999888633221   1112589999999999999999999999888753   22222334


Q ss_pred             HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014088           97 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  176 (431)
Q Consensus        97 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  176 (431)
                      ++..-.+|.|-.++..+....+|..-+.+|..|+...  ... .....-.....++++.+.+       ....  .+.+.
T Consensus       503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA--~rF-le~~q~~~~~g~~n~~nse-------t~~~--~~~~~  570 (1431)
T KOG1240|consen  503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA--YRF-LELTQELRQAGMLNDPNSE-------TAPE--QNYNT  570 (1431)
T ss_pred             hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH--HHH-HHHHHHHHhcccccCcccc-------cccc--cccch
Confidence            4444566777777744455667777777788877641  000 0011111122233433333       0000  01112


Q ss_pred             HHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhh
Q 014088          177 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  256 (431)
Q Consensus       177 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  256 (431)
                      ..+.+.+ ++-+.+..++.++++-|++..+..|.-||......   --+.-+++.|+-.|.+. ++.+|..-...+.-++
T Consensus       571 ~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvs  645 (1431)
T KOG1240|consen  571 ELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDK-DWRLRGAFFDSIVGVS  645 (1431)
T ss_pred             HHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCc-cHHHHHHHHhhccceE
Confidence            2232332 44455667778888889999899888888643311   12335688899999988 9999988777777665


Q ss_pred             cC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 014088          257 AG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE  335 (431)
Q Consensus       257 ~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~  335 (431)
                      .. ..    .-+++.++|.|.+-|.++.+.|...|+.+|..|+..+-   .++..-.++++....++-.++..++..++.
T Consensus       646 i~VG~----rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l---l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~  718 (1431)
T KOG1240|consen  646 IFVGW----RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL---LRKPAVKDILQDVLPLLCHPNLWIRRAVLG  718 (1431)
T ss_pred             EEEee----eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc---cchHHHHHHHHhhhhheeCchHHHHHHHHH
Confidence            41 01    11244578889999999999999999999999987652   222222235556666777899999999999


Q ss_pred             HHHHHHHhhhh
Q 014088          336 GLENILKAGEA  346 (431)
Q Consensus       336 ~L~~l~~~~~~  346 (431)
                      .|..+.+.-..
T Consensus       719 iI~~~~~~ls~  729 (1431)
T KOG1240|consen  719 IIAAIARQLSA  729 (1431)
T ss_pred             HHHHHHhhhhh
Confidence            88877665443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=1.4e-05  Score=77.44  Aligned_cols=308  Identities=17%  Similarity=0.158  Sum_probs=177.0

Q ss_pred             hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088           11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS   90 (431)
Q Consensus        11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   90 (431)
                      ++.|.++.     +.. ..+-+++.-+-.-+.+.+...++..     .+++..+++=.+++++.+|..|++.++.+-.+.
T Consensus        49 slF~dvvk-----~~~-T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~  117 (734)
T KOG1061|consen   49 SLFPDVVK-----CMQ-TRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK  117 (734)
T ss_pred             hhhHHHHh-----hcc-cCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeehH
Confidence            35555555     443 4456777777777778777555433     246677777777899999999999988875432


Q ss_pred             hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088           91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  170 (431)
Q Consensus        91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  170 (431)
                        ....     ...++.+.+ ++.++.+|+.++.++.++-..  ........|+++.|..++.++++.|..+|+.+|..+
T Consensus       118 --i~ey-----~~~Pl~~~l-~d~~~yvRktaa~~vakl~~~--~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI  187 (734)
T KOG1061|consen  118 --ITEY-----LCDPLLKCL-KDDDPYVRKTAAVCVAKLFDI--DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEI  187 (734)
T ss_pred             --HHHH-----HHHHHHHhc-cCCChhHHHHHHHHHHHhhcC--ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHH
Confidence              1122     467888888 788999999999999888766  344555679999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH
Q 014088          171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW  250 (431)
Q Consensus       171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~  250 (431)
                      ....++.-........+..++..+..-+.--+...+.++.+.....+....     .++..+...|.+. +..+...+..
T Consensus       188 ~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~-n~avvlsavK  261 (734)
T KOG1061|consen  188 HESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHA-NSAVVLSAVK  261 (734)
T ss_pred             HHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccC-CcceEeehHH
Confidence            866542111111112223333333322222223333333333222221111     2345556666666 6666666666


Q ss_pred             HHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC----------------HH-----HHH--
Q 014088          251 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS----------------NE-----QIK--  307 (431)
Q Consensus       251 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----------------~~-----~~~--  307 (431)
                      ++.++...-++ ....+-..+-++++.++.... +++..|++-+.-+.....                |-     ...  
T Consensus       262 v~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil  339 (734)
T KOG1061|consen  262 VILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEIL  339 (734)
T ss_pred             HHHHHHHHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHH
Confidence            66666543222 222222234445555554444 444333333333322211                00     000  


Q ss_pred             -HHHH-CC---ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088          308 -FLVS-QG---CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE  347 (431)
Q Consensus       308 -~l~~-~~---~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~  347 (431)
                       .+.. .+   ++.-+.++-...|.+....+.++++++....++.
T Consensus       340 ~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~  384 (734)
T KOG1061|consen  340 IELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS  384 (734)
T ss_pred             HHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh
Confidence             1111 11   2333444444567888899999999998766553

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=5.5e-06  Score=78.43  Aligned_cols=246  Identities=15%  Similarity=0.138  Sum_probs=155.1

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC------CCC
Q 014088           64 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP------QPL  137 (431)
Q Consensus        64 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~------~~~  137 (431)
                      +..+..+.+..++.+|+..|..+..... ..+.     .....++.+ .+.+..+|..|+.+++-.....|      ...
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            5555566667777777777666654221 1111     234456666 67788999988766665554432      122


Q ss_pred             hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC--
Q 014088          138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG--  215 (431)
Q Consensus       138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~--  215 (431)
                      .......+..+...+++.+..||..|..+|+.+-....+.+....+..++..+-+.-..   .-+-..+..=+.++.+  
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a---hkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA---HKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc---ccchHHHHhcCCcccCcc
Confidence            23346778888999999999999999999998876666655555554444432221100   0011111111111211  


Q ss_pred             ---------ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhH
Q 014088          216 ---------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  286 (431)
Q Consensus       216 ---------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  286 (431)
                               .+.....++.+|.-..++.-|.+. -.+||..|+..++.|+..+|.....     .+..|+++++++...|
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~V  426 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVV  426 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHH
Confidence                     123344567778888899999888 8999999999999999977765443     4668999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 014088          287 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV  332 (431)
Q Consensus       287 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~  332 (431)
                      |..|+.+|..++.+..       +++..++.+...+...++++++.
T Consensus       427 RL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~  465 (823)
T KOG2259|consen  427 RLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREA  465 (823)
T ss_pred             HHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHH
Confidence            9999999999876531       12223444444444444444443

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=0.00028  Score=73.33  Aligned_cols=313  Identities=19%  Similarity=0.140  Sum_probs=175.2

Q ss_pred             hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh
Q 014088           12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP   91 (431)
Q Consensus        12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~   91 (431)
                      ++|++.+      ..-.+++.+|..-..+=..+..++...-+... ..++.-|+.-|.+..+.+|+.++.+|..+....+
T Consensus       999 LIPrLyR------Y~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen  999 LIPRLYR------YQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred             hhHHHhh------hccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC
Confidence            5666666      56677777766555544455555444444433 2577788888888999999999999999997665


Q ss_pred             H--HHHHHHHcCChHHHHHHhccccchhHHHH---HHHHHHHhhcCC-C----CCChhhHhhhHHHHHHh-hcCCChHHH
Q 014088           92 K--CRDLVLSNGALMPLLAQFNEHAKLSMLRN---ATWTLSNFCRGK-P----QPLFEQTRPALPALERL-IHSNDDEVL  160 (431)
Q Consensus        92 ~--~~~~i~~~~~i~~l~~~l~~~~~~~~~~~---a~~~L~~l~~~~-~----~~~~~~~~~~i~~L~~l-L~~~~~~v~  160 (431)
                      .  ..+.+.+  ....+.+.+ ++-.+.+|..   ++.+|+.++-.. .    ..-......++|.|+.- +-+.-+++|
T Consensus      1072 ~~~~~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr 1148 (1702)
T KOG0915|consen 1072 FDQVKEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVR 1148 (1702)
T ss_pred             hHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHH
Confidence            3  2222222  334444444 4445666665   556666666443 1    11122234455555431 125668999


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHH-HHHHHhHhhcC-ChhhhHH----------------
Q 014088          161 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-ALRTVGNIVTG-DDMQTQC----------------  222 (431)
Q Consensus       161 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~-a~~~l~~l~~~-~~~~~~~----------------  222 (431)
                      ..++.++..+++..+.... -.-..+++.|++....-.+.+.-. ++++ .+.-.. -+..+..                
T Consensus      1149 ~~si~tl~dl~Kssg~~lk-P~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1149 RFSIGTLMDLAKSSGKELK-PHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred             HHHHHHHHHHHHhchhhhc-chhhHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence            9999999999987765433 122256677777766655544322 3333 111110 0011111                


Q ss_pred             ----HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088          223 ----IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  298 (431)
Q Consensus       223 ----~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  298 (431)
                          -+-...+|.+.++++.+..-..|..++..+.-|+........... ...+..++..+.+.+..+++....+.+.++
T Consensus      1227 ~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1227 YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred             hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence                111234555666665554455556666555555431111011111 124556666667778999999999999999


Q ss_pred             CCCCHHHHHHHHHCCChHHHH-hhcCCCCHHHHHHHHHHHHHHHHh
Q 014088          299 SGGSNEQIKFLVSQGCIKPLC-DLLNCPDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       299 ~~~~~~~~~~l~~~~~l~~L~-~ll~~~~~~v~~~al~~L~~l~~~  343 (431)
                      ....+++.+.+++     .+. .++.. ++.....++..+.++..+
T Consensus      1306 k~Ss~dq~qKLie-----~~l~~~l~k-~es~~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1306 KFSSPDQMQKLIE-----TLLADLLGK-DESLKSISCATISNIANY 1345 (1702)
T ss_pred             hcCChHHHHHHHH-----HHHHHHhcc-CCCccchhHHHHHHHHHh
Confidence            8888877777543     333 33332 222224555555554443

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=0.00082  Score=58.92  Aligned_cols=277  Identities=13%  Similarity=0.066  Sum_probs=179.3

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh--HHH--HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP--KCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  134 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~--~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  134 (431)
                      +..|.|-.-|..++..++..++..++.+..+.+  ...  ..++..+.++.++..+ -.+|.++...|...+..++..+.
T Consensus        82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-ggeddeVAkAAiesikrialfpa  160 (524)
T KOG4413|consen   82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGEDDEVAKAAIESIKRIALFPA  160 (524)
T ss_pred             hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhcHH
Confidence            345556666677888999999999998886654  222  2345778888888888 67788999999999999988753


Q ss_pred             CCChhhHhhhHH--HHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhH
Q 014088          135 QPLFEQTRPALP--ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGN  211 (431)
Q Consensus       135 ~~~~~~~~~~i~--~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~  211 (431)
                      .......+....  .+..+....+.-+|...+..+..+.+-.+........+|++..|..-+.. .+.-++.+++.....
T Consensus       161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte  240 (524)
T KOG4413|consen  161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE  240 (524)
T ss_pred             HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence            222222233322  12233333455677888888888888887777777788999888877776 677788889999888


Q ss_pred             hhcCChhhhHHHhhcCChHHHHHHhcccc-hhhHHHHHHHH----HHHhhcC--CHHH-HHHHHHhCCHHHHHHHHccCC
Q 014088          212 IVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWT----ISNITAG--NVNQ-IQAIIEAGIIGPLVNLLLNAE  283 (431)
Q Consensus       212 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~----L~nl~~~--~~~~-~~~l~~~~~i~~L~~ll~~~~  283 (431)
                      ++... ..++.+.+.++++.+.+++.... ++--+-.++..    +++.+..  +++. +..++-  .+....+++...+
T Consensus       241 Laete-HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealii--aidgsfEmiEmnD  317 (524)
T KOG4413|consen  241 LAETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIEMND  317 (524)
T ss_pred             HHHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhhcCC
Confidence            88643 34556668899999999886441 23333334433    3333321  2221 222222  3566677788889


Q ss_pred             HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCC--hH-HHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088          284 FEIKKEAAWAISNATSGGSNEQIKFLVSQGC--IK-PLCDLLNCPDPRIVTVCLEGLENIL  341 (431)
Q Consensus       284 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~--l~-~L~~ll~~~~~~v~~~al~~L~~l~  341 (431)
                      +.....|+.+++.+-++.  +....+...|-  .+ .+.+..+.....-+..++.+|.++.
T Consensus       318 pdaieaAiDalGilGSnt--eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  318 PDAIEAAIDALGILGSNT--EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA  376 (524)
T ss_pred             chHHHHHHHHHHhccCCc--chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence            999999999999998764  45555555553  22 2334444332223344455555543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=0.00035  Score=67.94  Aligned_cols=283  Identities=15%  Similarity=0.149  Sum_probs=182.1

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN  100 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~  100 (431)
                      |.++|.+. ....+..|..-|.++.....+..      ...|.+++...+.+.+++...---|...+...++.  .+.  
T Consensus        40 L~~lLdSn-kd~~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL--ALL--  108 (968)
T KOG1060|consen   40 LKQLLDSN-KDSLKLEAMKRIIALIAKGKDVS------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL--ALL--  108 (968)
T ss_pred             HHHHHhcc-ccHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc--eee--
Confidence            55566644 45777777776666554344432      46788999999999999998888888888776653  111  


Q ss_pred             CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhh-hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088          101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ  179 (431)
Q Consensus       101 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  179 (431)
                       .|..+-+-| .++++.+|..|+++|+.+--.       ...+ .+-.+-++..+..+-||+.|+.++-.+-+-+++...
T Consensus       109 -SIntfQk~L-~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~  179 (968)
T KOG1060|consen  109 -SINTFQKAL-KDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD  179 (968)
T ss_pred             -eHHHHHhhh-cCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence             467777888 889999998888888765222       1112 223444566678899999999999988766655444


Q ss_pred             HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-
Q 014088          180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-  258 (431)
Q Consensus       180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-  258 (431)
                           .+++.+-.+|.+.++.|.-.|+.++..+|...   .+ ++. +-...+.++|.+- ++-=+.....+|..-|+. 
T Consensus       180 -----qL~e~I~~LLaD~splVvgsAv~AF~evCPer---ld-LIH-knyrklC~ll~dv-deWgQvvlI~mL~RYAR~~  248 (968)
T KOG1060|consen  180 -----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPER---LD-LIH-KNYRKLCRLLPDV-DEWGQVVLINMLTRYARHQ  248 (968)
T ss_pred             -----HHHHHHHHHhcCCCCcchhHHHHHHHHhchhH---HH-Hhh-HHHHHHHhhccch-hhhhHHHHHHHHHHHHHhc
Confidence                 34466677888899999999999998887532   22 222 4567788888766 555566666677666642 


Q ss_pred             --CHHHHHHHH-HhC------------------------CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014088          259 --NVNQIQAII-EAG------------------------IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS  311 (431)
Q Consensus       259 --~~~~~~~l~-~~~------------------------~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  311 (431)
                        .|....... +.|                        ++...-.++.+.++.|...++.++..++-..   +..    
T Consensus       249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~---~~~----  321 (968)
T KOG1060|consen  249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN---QVT----  321 (968)
T ss_pred             CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH---HHH----
Confidence              221100000 000                        1222333556667888888888888886532   222    


Q ss_pred             CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088          312 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       312 ~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~  343 (431)
                       .+++.|+++|.+ +++++..++..+..+...
T Consensus       322 -~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~  351 (968)
T KOG1060|consen  322 -KIAKALVRLLRS-NREVQYVVLQNIATISIK  351 (968)
T ss_pred             -HHHHHHHHHHhc-CCcchhhhHHHHHHHHhc
Confidence             246677776654 445555556666555543

>PF05536 Neurochondrin: Neurochondrin

Probab=98.33  E-value=0.00013  Score=71.27  Aligned_cols=237  Identities=18%  Similarity=0.163  Sum_probs=167.1

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChH---HHHHHHHcCChHHHHHHhccc------cchhHHHHHHHHHHHhh
Q 014088           60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK---CRDLVLSNGALMPLLAQFNEH------AKLSMLRNATWTLSNFC  130 (431)
Q Consensus        60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~~~i~~l~~~l~~~------~~~~~~~~a~~~L~~l~  130 (431)
                      .++.-+.+|+..+++-+-.++..+.+++...+.   .++.+.++=+...+-++|...      +....+.-|+.+|..+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            456677888887777788888888888865543   234566766677777887542      34567778999999999


Q ss_pred             cCCCCCChhhHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHH
Q 014088          131 RGKPQPLFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  209 (431)
Q Consensus       131 ~~~~~~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l  209 (431)
                      ..+.........+.+|.+++++.+.+. ++...++.+|..++..+.. .+.+.+.|.++.|.+.+.+ .+.....++.++
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G-~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG-AKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh-HHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            976555556667899999999987776 9999999999999966554 4668889999999999887 566788899999


Q ss_pred             hHhhcCChhhhHH---HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH-H----HHHHHhCCHHHHHHHHcc
Q 014088          210 GNIVTGDDMQTQC---IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ-I----QAIIEAGIIGPLVNLLLN  281 (431)
Q Consensus       210 ~~l~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~----~~l~~~~~i~~L~~ll~~  281 (431)
                      .+++.........   -.-..+++.+.+.+... ....+.+++..|+++-...+.. .    ..-+-..+...+..++++
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            9987654311110   00113456666666666 6777888999999887754211 1    111223345566667766


Q ss_pred             C-CHhHHHHHHHHHHHhcC
Q 014088          282 A-EFEIKKEAAWAISNATS  299 (431)
Q Consensus       282 ~-~~~v~~~a~~aL~~l~~  299 (431)
                      . .+.-|..++.....+..
T Consensus       243 r~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  243 RLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            5 66777777777766654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.32  E-value=1.2e-06  Score=52.96  Aligned_cols=41  Identities=44%  Similarity=0.890  Sum_probs=38.4

Q ss_pred             ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088           48 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG   88 (431)
Q Consensus        48 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   88 (431)
                      ++++++.+++.|++|.|+++|+++++.+++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46889999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.32  E-value=0.00011  Score=67.90  Aligned_cols=239  Identities=14%  Similarity=0.141  Sum_probs=169.0

Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC--cccHHHHHHHHhHhhcCChhh
Q 014088          142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQ  219 (431)
Q Consensus       142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~  219 (431)
                      ....+.+..++-+++.+++..+.+++.++..+.. ..+.+.+.++--.++..|..+.  ..=|.+|++.+..+.......
T Consensus        24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~  102 (371)
T PF14664_consen   24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP  102 (371)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence            4455555555545559999999999999987764 4566777776666666676543  335678999999887653211


Q ss_pred             hHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          220 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       220 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                        ..+..+++..++.+..+. ++..|..|..+|+.++..+|+   .+...|++..|.+.+.++..++.+..+.++..+..
T Consensus       103 --~~~~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd  176 (371)
T PF14664_consen  103 --KEIPRGVVRALVAIAEHE-DDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD  176 (371)
T ss_pred             --ccCCHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence              123457888999999998 999999999999999998787   45678999999999988877788899999999987


Q ss_pred             CCCHHHHHHHHHCCChHHHHhhcCC-------CCH--HHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHH
Q 014088          300 GGSNEQIKFLVSQGCIKPLCDLLNC-------PDP--RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE  370 (431)
Q Consensus       300 ~~~~~~~~~l~~~~~l~~L~~ll~~-------~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  370 (431)
                      ..  ..++++...--++.+..-+.+       ++.  +-...+..++..+++.....=           .-......+++
T Consensus       177 ~p--~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl-----------~l~~~~~~~lk  243 (371)
T PF14664_consen  177 SP--RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL-----------YLSMNDFRGLK  243 (371)
T ss_pred             Cc--chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee-----------eeecCCchHHH
Confidence            65  444544332224444433321       122  355667788888887664421           11112224677


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088          371 KIENLQSHDNTEIYEKAVKILETYWVEEDE  400 (431)
Q Consensus       371 ~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~  400 (431)
                      .|...+..+++++++...+++-..|.-...
T Consensus       244 sLv~~L~~p~~~ir~~Ildll~dllrik~p  273 (371)
T PF14664_consen  244 SLVDSLRLPNPEIRKAILDLLFDLLRIKPP  273 (371)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence            788889999999999999999888875543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.00044  Score=67.33  Aligned_cols=259  Identities=18%  Similarity=0.159  Sum_probs=158.3

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  104 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  104 (431)
                      ......+-+|..|+.+|-++-.-.++...+     ++..+-.+|.+.++.+.-.|+.++-.+|-+.-   +.+.  +-..
T Consensus       151 ~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLIH--knyr  220 (968)
T KOG1060|consen  151 AVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLIH--KNYR  220 (968)
T ss_pred             HhcCCcHHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHhh--HHHH
Confidence            344566788888888888887656666554     34566678888889999999999998885432   2222  2456


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCC-CCCC----------------------------hhhHhhhHHHHHHhhcCC
Q 014088          105 PLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL----------------------------FEQTRPALPALERLIHSN  155 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~----------------------------~~~~~~~i~~L~~lL~~~  155 (431)
                      .++++|.+-.++ =+......|..-|+.. +.+.                            -....-++...-.+|.+.
T Consensus       221 klC~ll~dvdeW-gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~  299 (968)
T KOG1060|consen  221 KLCRLLPDVDEW-GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR  299 (968)
T ss_pred             HHHhhccchhhh-hHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC
Confidence            677777332222 2334444454445543 2110                            011123445555677888


Q ss_pred             ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh-----------
Q 014088          156 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-----------  224 (431)
Q Consensus       156 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-----------  224 (431)
                      ++.+...++.++..++-...  ..     .++..|+++|+++ ..++...+..+..++...+......+           
T Consensus       300 n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~  371 (968)
T KOG1060|consen  300 NPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPT  371 (968)
T ss_pred             CcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHH
Confidence            99999999999999884432  12     4467788877654 35666666666666644332211111           


Q ss_pred             --------------hcCC----hHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhH
Q 014088          225 --------------NHQA----LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  286 (431)
Q Consensus       225 --------------~~~~----l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  286 (431)
                                    +..-    ++-+...+++. +..+...+..+|+.++......     ...++..|+.++.+.+..|
T Consensus       372 ~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde~V  445 (968)
T KOG1060|consen  372 QVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQLLSSHDELV  445 (968)
T ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHHHHhcccchh
Confidence                          1111    12222223344 4467777888888887642222     2235777899999888899


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHH
Q 014088          287 KKEAAWAISNATSGGSNEQIKF  308 (431)
Q Consensus       287 ~~~a~~aL~~l~~~~~~~~~~~  308 (431)
                      ..+++..|..+......+..+.
T Consensus       446 v~eaV~vIk~Llq~~p~~h~~i  467 (968)
T KOG1060|consen  446 VAEAVVVIKRLLQKDPAEHLEI  467 (968)
T ss_pred             HHHHHHHHHHHHhhChHHHHHH
Confidence            9999999999988765555444

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=0.00082  Score=67.55  Aligned_cols=328  Identities=13%  Similarity=0.144  Sum_probs=209.7

Q ss_pred             HHHHHHHHHHHHHcCCChHhHHHHHh----CCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           32 AVQFEAAWALTNIASGTSENTRVVID----HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        32 ~~~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      +-...++.+|.|+...+++....+..    -|..+.+..++.. .++.++..|+.++..+.... ++...+...+.+..|
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHH
Confidence            34567889999999888865443332    3778888888876 78899999999998887655 467778888888888


Q ss_pred             HHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCC---h-HHHHHH
Q 014088          107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGT---N-DKIQAV  181 (431)
Q Consensus       107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~---~-~~~~~~  181 (431)
                      +.+| ++ -+..++.++.+|..|+............|.+..+..++- ++.+..|..++..++.+..++   + ..+- +
T Consensus      1819 L~lL-HS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT-L 1895 (2235)
T KOG1789|consen 1819 LTLL-HS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT-L 1895 (2235)
T ss_pred             HHHH-hc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee-h
Confidence            8888 33 578899999999999988654455555677777776654 567889999999999887432   1 1110 1


Q ss_pred             HH---h-------CcHHHHHHhcCC--CCcc------cHHHHHHHHhHhhcC-------C-------hh-----------
Q 014088          182 IE---A-------GVCPRLVELLRH--PSPS------VLIPALRTVGNIVTG-------D-------DM-----------  218 (431)
Q Consensus       182 ~~---~-------~~i~~L~~ll~~--~~~~------v~~~a~~~l~~l~~~-------~-------~~-----------  218 (431)
                      ++   .       +.-+..+..+..  ++|+      .+...-..+..++..       +       ++           
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence            10   0       111333333322  2222      222222233333310       0       00           


Q ss_pred             ------hhHHHh-------------hcCChHHHHHHhcccc-hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHH
Q 014088          219 ------QTQCII-------------NHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL  278 (431)
Q Consensus       219 ------~~~~~~-------------~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l  278 (431)
                            ..+.++             -.++++.+.++|..+. ....-.--..++..|.+.-|.....+-.-|.+|+++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                  001111             1133555556664331 12222223334445555556666677678999999999


Q ss_pred             HccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcch
Q 014088          279 LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL  358 (431)
Q Consensus       279 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~  358 (431)
                      +...+..+-..|+++|..++.+.  -....+.+...+..++..++. .+...-.|+++|.+++......-          
T Consensus      2056 m~~~n~s~P~SaiRVlH~Lsen~--~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eL---------- 2122 (2235)
T KOG1789|consen 2056 MCLQNTSAPRSAIRVLHELSENQ--FCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGEL---------- 2122 (2235)
T ss_pred             HHhcCCcCcHHHHHHHHHHhhcc--HHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHH----------
Confidence            98877777789999999998864  567777777778888877763 34455589999999998655432          


Q ss_pred             HHHHHHhhccHHHHHHhhc
Q 014088          359 FAQAIDDAEGLEKIENLQS  377 (431)
Q Consensus       359 ~~~~l~~~~~~~~l~~l~~  377 (431)
                      +.+.+ ..|.++-|..|+.
T Consensus      2123 VAQ~L-K~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2123 VAQML-KCGLVPYLLQLLD 2140 (2235)
T ss_pred             HHHHh-ccCcHHHHHHHhc
Confidence            34444 4888888877754

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.28  E-value=6.1e-05  Score=65.44  Aligned_cols=225  Identities=14%  Similarity=0.168  Sum_probs=152.3

Q ss_pred             ChHHHHHHHHHHHHHcCCChHhHHHHH-hCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHHHHHH-HcCChHH
Q 014088           30 FGAVQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVL-SNGALMP  105 (431)
Q Consensus        30 ~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~i~~  105 (431)
                      ++-.+.-|++|+.++.. .++.|.... +...-..++..+++  ....++-..+.+++.++..+. +.+.+- .-..+..
T Consensus       162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~d  239 (432)
T COG5231         162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMDDLIND  239 (432)
T ss_pred             HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHH
Confidence            45678888899999987 466666544 44566778888876  668899999999999876543 332221 1235667


Q ss_pred             HHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hHhhhHHHHHHhh-cC--CChHHHHHHHHHHHHhccCC------
Q 014088          106 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLI-HS--NDDEVLTDACWALSYLSDGT------  174 (431)
Q Consensus       106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~i~~L~~lL-~~--~~~~v~~~a~~~L~~l~~~~------  174 (431)
                      ++++.+....+.+.+.++.++.|++...|...+.  ...+-+...++.| +.  +|.+++...-..=..+..+.      
T Consensus       240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f  319 (432)
T COG5231         240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF  319 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            7777777778899999999999999854332222  2233233344444 32  35555443322222121110      


Q ss_pred             ---------------h---------HHHHHHHH--hCcHHHHHHhcCCCCcc-cHHHHHHHHhHhhcCChhhhHHHhhcC
Q 014088          175 ---------------N---------DKIQAVIE--AGVCPRLVELLRHPSPS-VLIPALRTVGNIVTGDDMQTQCIINHQ  227 (431)
Q Consensus       175 ---------------~---------~~~~~~~~--~~~i~~L~~ll~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~  227 (431)
                                     |         .+...+.+  ..++..|..+++...+. ....|+.-++.+++..++....+.+.|
T Consensus       320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg  399 (432)
T COG5231         320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG  399 (432)
T ss_pred             HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence                           0         11222322  24678888999887666 666789999999998888888888999


Q ss_pred             ChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088          228 ALPCLLDLLTQNYKKSIKKEACWTISNITA  257 (431)
Q Consensus       228 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  257 (431)
                      +=..+++++.++ +++++-+|+.++..+..
T Consensus       400 ~k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         400 VKEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             hHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            999999999999 99999999998876643

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=0.00011  Score=76.29  Aligned_cols=353  Identities=14%  Similarity=0.142  Sum_probs=195.9

Q ss_pred             hhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC--CCh
Q 014088           15 LFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAG--DSP   91 (431)
Q Consensus        15 ~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~   91 (431)
                      ..+...+...+ .+++|..|..++-.|..+..+....+.... ...+...+..+|.+.++-+|..|.+.|+-+-.  +.+
T Consensus       817 ~~~~~~l~~~~-~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~  895 (1702)
T KOG0915|consen  817 TIILKLLDTLL-TSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS  895 (1702)
T ss_pred             HHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence            33333334444 467788887665555544432222222222 22455788888888887777777766654431  111


Q ss_pred             HHHHH------------------------HHHcCC----------------------------hHHHHHHhccccchhHH
Q 014088           92 KCRDL------------------------VLSNGA----------------------------LMPLLAQFNEHAKLSML  119 (431)
Q Consensus        92 ~~~~~------------------------i~~~~~----------------------------i~~l~~~l~~~~~~~~~  119 (431)
                       .++.                        +++.|.                            +-.++++-.++..+.-+
T Consensus       896 -~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk  974 (1702)
T KOG0915|consen  896 -LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSK  974 (1702)
T ss_pred             -hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcc
Confidence             1111                        111111                            11112222222233334


Q ss_pred             HHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCc
Q 014088          120 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP  199 (431)
Q Consensus       120 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  199 (431)
                      .-|+.-+..++.............++|.|.+.=.+++..|+.....+...+..+.......... .+++.|+.-+.+..+
T Consensus       975 ~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kew 1053 (1702)
T KOG0915|consen  975 KGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEW 1053 (1702)
T ss_pred             cchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhH
Confidence            4455555556555433333445667777777777889999988888877777765554443333 678888888888999


Q ss_pred             ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHH---HHHHHHhhcC-----CHHHHHHHHHhCC
Q 014088          200 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA---CWTISNITAG-----NVNQIQAIIEAGI  271 (431)
Q Consensus       200 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a---~~~L~nl~~~-----~~~~~~~l~~~~~  271 (431)
                      .+|+.+|-++..+..+.+.....-.-..+...+...+++- .+.||+.|   +.+|+.++..     +....+..++ .+
T Consensus      1054 RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~i 1131 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEALD-II 1131 (1702)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HH
Confidence            9999999999999988652211111113455566666665 67777754   5555655531     1111222222 14


Q ss_pred             HHHHHH--HHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH-HHHHHHHHHHhh-hhh
Q 014088          272 IGPLVN--LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV-CLEGLENILKAG-EAE  347 (431)
Q Consensus       272 i~~L~~--ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~-al~~L~~l~~~~-~~~  347 (431)
                      +|.|++  ++ +.-.++|.-++.++..++...+......+.+  .++.|.+..+.-++.+..+ ++++ .++-... +..
T Consensus      1132 LPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~--LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~ 1207 (1702)
T KOG0915|consen 1132 LPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPK--LIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTL 1207 (1702)
T ss_pred             HHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhH--HHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHH
Confidence            454443  12 3457899999999999998776544444333  6777788777666665543 3333 2221111 111


Q ss_pred             hhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 014088          348 KNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  387 (431)
Q Consensus       348 ~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a  387 (431)
                                 -.+.-+..-.++.|..+.++-+..+-+.-
T Consensus      1208 -----------R~s~aksspmmeTi~~ci~~iD~~vLeel 1236 (1702)
T KOG0915|consen 1208 -----------RASAAKSSPMMETINKCINYIDISVLEEL 1236 (1702)
T ss_pred             -----------HHhhhcCCcHHHHHHHHHHhhhHHHHHHH
Confidence                       12233344456667777666665554433

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=3.7e-05  Score=71.70  Aligned_cols=322  Identities=14%  Similarity=0.070  Sum_probs=197.3

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC--
Q 014088           58 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--  135 (431)
Q Consensus        58 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--  135 (431)
                      .+++++++..+.+++..+|..|+..+.|++.-... .....-..+...+.++. .+++..+ +.++..+-.+.++...  
T Consensus        83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~-~v~~~Fn~iFdvL~kls-aDsd~~V-~~~aeLLdRLikdIVte~  159 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG-EVLVYFNEIFDVLCKLS-ADSDQNV-RGGAELLDRLIKDIVTES  159 (675)
T ss_pred             HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc-CcccchHHHHHHHHHHh-cCCcccc-ccHHHHHHHHHHHhcccc
Confidence            46888999999999999999999999999843211 01111112334444544 4444443 4566667666666522  


Q ss_pred             CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088          136 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  215 (431)
Q Consensus       136 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~  215 (431)
                      .......+++|.+-.-+...++..|...+.-+..+-..++-..-. .-..+++.|...|.+++.+++..+=.+++++...
T Consensus       160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~-yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e  238 (675)
T KOG0212|consen  160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMIS-YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE  238 (675)
T ss_pred             ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHh-cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            223445778888888888889999998888887776555422111 1126788889999999999998777767666432


Q ss_pred             ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHh-HHHHHHHH-
Q 014088          216 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKKEAAWA-  293 (431)
Q Consensus       216 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~-v~~~a~~a-  293 (431)
                      -......+--...++.++..+.++ ++.++..|..-+..+..-.+... ...-+|++..++.++.+.... ++..+... 
T Consensus       239 I~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n  316 (675)
T KOG0212|consen  239 IRSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQMVN  316 (675)
T ss_pred             HhcCccccCcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence            111101111225678888899888 89999988777777766322211 112345666777777665443 44333322 


Q ss_pred             --HHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH
Q 014088          294 --ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  371 (431)
Q Consensus       294 --L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  371 (431)
                        +..+..  ++.....+.-...++.+...++.+..+.+-.++.-+..+.......           ...  .....+..
T Consensus       317 ~~l~~l~s--~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q-----------l~~--h~~~if~t  381 (675)
T KOG0212|consen  317 GLLLKLVS--SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ-----------LLV--HNDSIFLT  381 (675)
T ss_pred             HHHHHHHh--hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch-----------hhh--hccHHHHH
Confidence              222222  1111111222346888888888888888888887777776554321           111  11223444


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088          372 IENLQSHDNTEIYEKAVKILETYWVEEDE  400 (431)
Q Consensus       372 l~~l~~~~~~~v~~~a~~~l~~~~~~e~~  400 (431)
                      |..-+.+++.+|-.++..++.....++.+
T Consensus       382 LL~tLsd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  382 LLKTLSDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             HHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence            44446667778888888888887776654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.21  E-value=3.5e-06  Score=50.99  Aligned_cols=41  Identities=46%  Similarity=0.690  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          259 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       259 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      +++.++.+++.|++|.|++++.+++.+++++|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            47889999999999999999999999999999999999863

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.20  E-value=2.2e-05  Score=68.35  Aligned_cols=186  Identities=17%  Similarity=0.230  Sum_probs=116.6

Q ss_pred             CCCCcccHHHHHHHHhHhhcCC--hhhhHHHhh--cCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 014088          195 RHPSPSVLIPALRTVGNIVTGD--DMQTQCIIN--HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG  270 (431)
Q Consensus       195 ~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  270 (431)
                      .+.+++.+..++.-|..++.++  ......+..  ..++..+...+.+. ...+...|+.++..++...........+ .
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-I   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence            5577888999999999998766  222222221  15667788888888 8899999999999998742333444444 3


Q ss_pred             CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 014088          271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM  350 (431)
Q Consensus       271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~  350 (431)
                      ++|.|++.+.++..-++..|..+|..++....  ....+    ....+....+++++.++..++..+..++.........
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            78999999999988999999999999998764  11110    1556667788999999999999999998876621110


Q ss_pred             CCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          351 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       351 ~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                              +.....-....+.+....++++++||+.|..++..|+.
T Consensus       169 --------l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  169 --------LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             --------G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             --------hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence                    11111012346678888999999999999988877654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.18  E-value=0.0006  Score=63.19  Aligned_cols=209  Identities=25%  Similarity=0.305  Sum_probs=145.0

Q ss_pred             HhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088           22 FHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG  101 (431)
Q Consensus        22 v~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  101 (431)
                      ++.+. ++++.++..+.+.++.+..           .-.++.+..++.+.++.+|..+..+|+.+-.  +.         
T Consensus        49 ~~~l~-~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~~---------  105 (335)
T COG1413          49 LKLLE-DEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--PE---------  105 (335)
T ss_pred             HHHHc-CCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--hh---------
Confidence            33444 4467888888888766654           2478999999999999999999998888732  22         


Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCCh------------HHHHHHHHHHHH
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD------------EVLTDACWALSY  169 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------~v~~~a~~~L~~  169 (431)
                      .++.++..+..+.+..++..+.++|..+-..          ..+..++..+++...            .++..+...+..
T Consensus       106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~  175 (335)
T COG1413         106 AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE  175 (335)
T ss_pred             HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH
Confidence            5788899995578999999999999998665          346667777776552            234444444433


Q ss_pred             hccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHH
Q 014088          170 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC  249 (431)
Q Consensus       170 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~  249 (431)
                      +..           ...++.+...+......++..+..+++.+...+         ..+.+.+.+.+.+. +..+|..++
T Consensus       176 ~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~vr~~~~  234 (335)
T COG1413         176 LGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLEVRKAAL  234 (335)
T ss_pred             cCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHHHHHHHH
Confidence            321           134566777777777788888888888776644         23456677777777 888888888


Q ss_pred             HHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHH
Q 014088          250 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  295 (431)
Q Consensus       250 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  295 (431)
                      .+++.+-..           ..++.++..+...+..++..+...+.
T Consensus       235 ~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         235 LALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             HHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence            877776442           13455666677776666665555554

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.17  E-value=1.9e-05  Score=59.65  Aligned_cols=133  Identities=13%  Similarity=0.114  Sum_probs=108.6

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  181 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  181 (431)
                      .+..|+.-.....+.+.++....-|.|++.++..........++..++..+...+..+...++..|+|+|-+.. ....+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~~I   95 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAKFI   95 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHHHH
Confidence            46677777777889999999999999999987666666667899999999999999999999999999997764 45668


Q ss_pred             HHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHH
Q 014088          182 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  235 (431)
Q Consensus       182 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l  235 (431)
                      .+.++++.++..++++...+...++.++..++......+..+....++..+..+
T Consensus        96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~  149 (173)
T KOG4646|consen   96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW  149 (173)
T ss_pred             HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence            888999999999999988889999999999988776666655554444443333

>PF05536 Neurochondrin: Neurochondrin

Probab=98.17  E-value=0.00026  Score=69.15  Aligned_cols=242  Identities=16%  Similarity=0.135  Sum_probs=163.9

Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH---HHHHHHhCcHHHHHHhcCC-------CCcccHHHHHHHHhHh
Q 014088          143 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDK---IQAVIEAGVCPRLVELLRH-------PSPSVLIPALRTVGNI  212 (431)
Q Consensus       143 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~l~~l  212 (431)
                      ..+...+.+|+..+.+-+-.++..+.++..+.+..   .+.+.+.=+.+.+-++|++       +....+.-++.++..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            45778889999888777888888888998876532   2235555456777778776       2244667788888888


Q ss_pred             hcCChhhh-HHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHH
Q 014088          213 VTGDDMQT-QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  291 (431)
Q Consensus       213 ~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  291 (431)
                      +...+-.. ..++  +.+|.|++.+.+..+..+...++.+|..++. .++..+.+++.|.++.|++.+.+ .+.....|+
T Consensus        85 ~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   85 CRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             cCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence            87433111 1122  5689999999888334999999999999994 58899999999999999999988 556788899


Q ss_pred             HHHHHhcCCCCHHHHHHH--HHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh--hhcCCCCCcchHHHHHHhhc
Q 014088          292 WAISNATSGGSNEQIKFL--VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE--KNMGNTGGVNLFAQAIDDAE  367 (431)
Q Consensus       292 ~aL~~l~~~~~~~~~~~l--~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~  367 (431)
                      .++.+++.....+....-  .-..++..+...+...+...+...+..|..++...+..  +....+.+    ...+    
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W----~~~l----  232 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKW----LSDL----  232 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhh----HHHH----
Confidence            999998775542222110  01134566666666666666777899999998877321  11111111    1222    


Q ss_pred             cHHHHHHh-hcCCCHHHHHHHHHHHHHhcCC
Q 014088          368 GLEKIENL-QSHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       368 ~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~  397 (431)
                       ..-|..+ .+...++-|..|..+...+.+-
T Consensus       233 -~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  233 -RKGLRDILQSRLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             -HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence             2224444 5677888888887777666553

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.15  E-value=0.00024  Score=70.85  Aligned_cols=335  Identities=12%  Similarity=0.060  Sum_probs=200.7

Q ss_pred             hHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHh
Q 014088           31 GAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  110 (431)
Q Consensus        31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l  110 (431)
                      ..+|+.|...+.++...-....  =..+.+.+.+++..++++..++.........++..-..   .......+++....+
T Consensus       290 dsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~  364 (759)
T KOG0211|consen  290 DSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL  364 (759)
T ss_pred             hhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh
Confidence            4566666555555543111000  11123455555555555555555544444444321100   111112344455555


Q ss_pred             ccccchhHHHHHHHHHHHhhcCCC--CCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 014088          111 NEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  188 (431)
Q Consensus       111 ~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  188 (431)
                       .+...+.+..++.-...++....  ..........+|.+-.+..+.+..++...+..+..+..-.+.  ...+ ....+
T Consensus       365 -~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp  440 (759)
T KOG0211|consen  365 -KDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI-SELLP  440 (759)
T ss_pred             -cchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc-cccCh
Confidence             44445555555554444444332  122223355678888888888888888887777766533221  1011 14566


Q ss_pred             HHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 014088          189 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE  268 (431)
Q Consensus       189 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  268 (431)
                      .++..+++..+.++......+..+-..++..-........++.+..+-... ..++|.+..+.+-.++....   ..+.+
T Consensus       441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~  516 (759)
T KOG0211|consen  441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFD  516 (759)
T ss_pred             hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhh
Confidence            777788888899999988877666555554434445557788888888777 89999999999988876311   23333


Q ss_pred             hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 014088          269 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEK  348 (431)
Q Consensus       269 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~  348 (431)
                      ...-+.+...+.+....++..|...+..++...+.+.    .....++.+......++...+...+.++.-+.....+. 
T Consensus       517 ~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w----~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e-  591 (759)
T KOG0211|consen  517 EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW----ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE-  591 (759)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch----hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-
Confidence            3344555556677778999999999988876443111    12234666666666666777888888888666554322 


Q ss_pred             hcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088          349 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       349 ~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  397 (431)
                                    +.....++.+..+.+++.++||-.+.+.+..+...
T Consensus       592 --------------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~  626 (759)
T KOG0211|consen  592 --------------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL  626 (759)
T ss_pred             --------------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence                          33455678888999999999999998888776553

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.13  E-value=0.00012  Score=68.69  Aligned_cols=276  Identities=15%  Similarity=0.076  Sum_probs=142.0

Q ss_pred             hHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHh
Q 014088           31 GAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  110 (431)
Q Consensus        31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l  110 (431)
                      ..++..+++.++.++..+  ....+++ ..+..|-.+|++.....|-.|+++|..++...|.   .+..  +-+.+-.++
T Consensus       278 emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~---kv~v--cN~evEsLI  349 (898)
T COG5240         278 EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ---KVSV--CNKEVESLI  349 (898)
T ss_pred             hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc---eeee--cChhHHHHh
Confidence            467777777777776533  1122221 3466677777777777788888888888765553   1111  112222333


Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 014088          111 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  190 (431)
Q Consensus       111 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  190 (431)
                       .+.+..+--+|.   ..|.+..........-..++.+++=+.++-.-+...|++.   ++-.-+....     ..+..|
T Consensus       350 -sd~Nr~IstyAI---TtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rs---Lsl~Fp~k~~-----s~l~FL  417 (898)
T COG5240         350 -SDENRTISTYAI---TTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRS---LSLLFPSKKL-----SYLDFL  417 (898)
T ss_pred             -hcccccchHHHH---HHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHH---HHhhCcHHHH-----HHHHHH
Confidence             344443333333   3333332222222222223333332323323333333333   3333332222     122333


Q ss_pred             HHhc-CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 014088          191 VELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA  269 (431)
Q Consensus       191 ~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  269 (431)
                      ...| +.+..+.+..++.++..+....+...+     .++..|...+.+.+-+++....+..||.=....+.-      .
T Consensus       418 ~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P------~  486 (898)
T COG5240         418 GSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQITVRILGILGREGPRAKTP------G  486 (898)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCc------c
Confidence            3333 334556667777777777665544433     234455666655433444333333333322111110      0


Q ss_pred             CCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088          270 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  341 (431)
Q Consensus       270 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~  341 (431)
                      ..+..+..-+.-++.-+|..|+.+|..++.+.+...    ....+...|.++++..|.+++..|..++.++-
T Consensus       487 ~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         487 KYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            124445554555577899999999999987664222    22335667788999999999999998888875

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.12  E-value=0.0009  Score=62.03  Aligned_cols=187  Identities=23%  Similarity=0.314  Sum_probs=142.8

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  138 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  138 (431)
                      ..++.+.+++.+++..++..+.+.++.+-..           ..++.+...+ .+.++.++..+..+|+.+-..      
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l-~d~~~~vr~~a~~aLg~~~~~------  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELL-SDEDPRVRDAAADALGELGDP------  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHh-cCCCHHHHHHHHHHHHccCCh------
Confidence            4688999999999999999999997776321           2577888888 788889999999988876543      


Q ss_pred             hhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCc------------ccHHHH
Q 014088          139 EQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP------------SVLIPA  205 (431)
Q Consensus       139 ~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~------------~v~~~a  205 (431)
                          ..++.++.++. +.+..+|..+.++|+.+-...           .+..++..+.+...            .++..+
T Consensus       105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                57888888888 689999999999998875432           24555666655441            244445


Q ss_pred             HHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHh
Q 014088          206 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  285 (431)
Q Consensus       206 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  285 (431)
                      ...++.+-           +...++.+.+.+.+. ...+|..|..+|+.+...+         ..+.+.+...+.+++..
T Consensus       170 ~~~l~~~~-----------~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         170 AEALGELG-----------DPEAIPLLIELLEDE-DADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHcC-----------ChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            54444432           234578899999888 8899999999999998764         23567788888999999


Q ss_pred             HHHHHHHHHHHhcC
Q 014088          286 IKKEAAWAISNATS  299 (431)
Q Consensus       286 v~~~a~~aL~~l~~  299 (431)
                      ++..++.+++.+-.
T Consensus       229 vr~~~~~~l~~~~~  242 (335)
T COG1413         229 VRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHHHhcccCc
Confidence            99999999998754

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.12  E-value=0.00059  Score=65.21  Aligned_cols=297  Identities=16%  Similarity=0.093  Sum_probs=177.9

Q ss_pred             HHHHHHhhcCCCCCChhhHhhhHHHHHHhh----------cCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 014088          123 TWTLSNFCRGKPQPLFEQTRPALPALERLI----------HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  192 (431)
Q Consensus       123 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  192 (431)
                      +.+|..++++............+..|.++-          ...+.++...|+.||+|+....+...+.+.+.|..+.++.
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            445666666654444444455666666655          2457899999999999999998888888999999999999


Q ss_pred             hcCCC-----CcccHHHHHHHHhHhhcCChhhhHHHhh-cCChHHHHHHhcc----------------cchhhHHHHHHH
Q 014088          193 LLRHP-----SPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQ----------------NYKKSIKKEACW  250 (431)
Q Consensus       193 ll~~~-----~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~----------------~~~~~v~~~a~~  250 (431)
                      .|+..     +.++.-...+++--++......+..+++ .+++..+...+..                +.+.....+++.
T Consensus        82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK  161 (446)
T PF10165_consen   82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK  161 (446)
T ss_pred             HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence            99775     6778888888888887766666666654 4677777666621                114456678889


Q ss_pred             HHHHhhcCCHHHHH-HHHH--hCCHHHHHHHH---cc--CCHhHHHHHHHHHHHhcCCCCHHHH----------HHHHHC
Q 014088          251 TISNITAGNVNQIQ-AIIE--AGIIGPLVNLL---LN--AEFEIKKEAAWAISNATSGGSNEQI----------KFLVSQ  312 (431)
Q Consensus       251 ~L~nl~~~~~~~~~-~l~~--~~~i~~L~~ll---~~--~~~~v~~~a~~aL~~l~~~~~~~~~----------~~l~~~  312 (431)
                      ++-|+....+.... ....  ..++..+..++   ..  +.......++.+|.|+-........          ......
T Consensus       162 llFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~  241 (446)
T PF10165_consen  162 LLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM  241 (446)
T ss_pred             HHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence            99999875333222 1111  11334444442   11  1356778888888888321110000          000112


Q ss_pred             CChHHHHhhcCC----C-C---HHHHHHHHHHHHHHHHhhhhhhhcCC----CCCcchHHHHHH-hhccHHHHHHhhcCC
Q 014088          313 GCIKPLCDLLNC----P-D---PRIVTVCLEGLENILKAGEAEKNMGN----TGGVNLFAQAID-DAEGLEKIENLQSHD  379 (431)
Q Consensus       313 ~~l~~L~~ll~~----~-~---~~v~~~al~~L~~l~~~~~~~~~~~~----~~~~~~~~~~l~-~~~~~~~l~~l~~~~  379 (431)
                      ..+..|+.+++.    . +   .+...-.+.+|.++.+.....++...    +.. ......+. ....-.+|.+++.++
T Consensus       242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~-~Dr~~~~e~~~tL~~rLlrLmt~~  320 (446)
T PF10165_consen  242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPD-KDRKKPPEKGDTLRSRLLRLMTSP  320 (446)
T ss_pred             HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCCh-hhcccCCCCCcchHHHHHHHhCCC
Confidence            235555555531    1 1   23445566677777766543222000    000 00000111 123456788899888


Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcccC-----CCCCCCCCC
Q 014088          380 NTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFA-----GNGLPVPSG  426 (431)
Q Consensus       380 ~~~v~~~a~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  426 (431)
                      .+.++..+...+=.++      ++++.-=+.|-|||||     .+|+++|..
T Consensus       321 ~~~~k~~vaellf~Lc------~~d~~~~v~~~GyG~AaG~L~~~gl~~~~~  366 (446)
T PF10165_consen  321 DPQLKDAVAELLFVLC------KEDASRFVKYVGYGNAAGFLASRGLGGPPE  366 (446)
T ss_pred             CchHHHHHHHHHHHHH------hhhHHHHHHHcCchhHHHHHHHcCCCCCcc
Confidence            8999999988886664      4455666677788876     467766643

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=0.0011  Score=63.76  Aligned_cols=281  Identities=17%  Similarity=0.174  Sum_probs=169.0

Q ss_pred             CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHH
Q 014088           28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMP  105 (431)
Q Consensus        28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~  105 (431)
                      |.++..+.-|+.+++|+.+  .+.++.+..  =|+   ++|.+  ..+-++..++-+|..+.+..|+   .+-..+....
T Consensus       122 srn~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~r  191 (938)
T KOG1077|consen  122 SRNPTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQR  191 (938)
T ss_pred             cCCcHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHH
Confidence            4556788888899998865  455554442  233   55655  3477888899999998877654   2323345778


Q ss_pred             HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC-------------CChHHHHHHHHHHHHhcc
Q 014088          106 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-------------NDDEVLTDACWALSYLSD  172 (431)
Q Consensus       106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~-------------~~~~v~~~a~~~L~~l~~  172 (431)
                      ++.+| .+.+-.+.-.+...+-.++...+..........+..|..+...             +.|=++..+++.|.+.-.
T Consensus       192 iv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~  270 (938)
T KOG1077|consen  192 IVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT  270 (938)
T ss_pred             HHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC
Confidence            88888 5556666667777788888776444333333333333333221             234567777777776632


Q ss_pred             CChHHHHHHHHhCcHHHHHHhcCCC--Cc-----ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHH
Q 014088          173 GTNDKIQAVIEAGVCPRLVELLRHP--SP-----SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK  245 (431)
Q Consensus       173 ~~~~~~~~~~~~~~i~~L~~ll~~~--~~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  245 (431)
                      -.+.... ..-..+++.++...+..  ..     ..+-..+.-.-+++.+-+.....+.  ..+..|-+++.+. +..+|
T Consensus       271 ~~D~~~r-~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiR  346 (938)
T KOG1077|consen  271 PEDPSTR-ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIR  346 (938)
T ss_pred             CCCchHH-HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccch
Confidence            2211111 11113444444444421  11     1222223323333333332222222  4577888899888 89999


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc-cCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 014088          246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC  324 (431)
Q Consensus       246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~  324 (431)
                      .-|+..++.++.. ......+..+  ...++..|+ ..|..+|+.|+..|..|+...   +.+.     ++.-|.+++.+
T Consensus       347 YLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~-----IV~elLqYL~t  415 (938)
T KOG1077|consen  347 YLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQ-----IVAELLQYLET  415 (938)
T ss_pred             hhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh---hHHH-----HHHHHHHHHhh
Confidence            9999999999875 2223333333  667888888 569999999999999998754   3443     46667777877


Q ss_pred             CCHHHHHHHH
Q 014088          325 PDPRIVTVCL  334 (431)
Q Consensus       325 ~~~~v~~~al  334 (431)
                      .++.+++...
T Consensus       416 Ad~sireeiv  425 (938)
T KOG1077|consen  416 ADYSIREEIV  425 (938)
T ss_pred             cchHHHHHHH
Confidence            7777775533

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.11  E-value=0.00076  Score=63.46  Aligned_cols=259  Identities=11%  Similarity=0.112  Sum_probs=136.3

Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088          105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA  184 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  184 (431)
                      .|-..+ ++.-+.+.-.+++.+..++..+  .........+..|-.+|.+.....|-.|+++|..++...|.... .+. 
T Consensus       268 fL~~wl-s~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-vcN-  342 (898)
T COG5240         268 FLNSWL-SDKFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-VCN-  342 (898)
T ss_pred             HHHHHh-cCcchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-ecC-
Confidence            333444 4444667777888888877764  33345567888888899999999999999999999977664432 111 


Q ss_pred             CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHH
Q 014088          185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ  264 (431)
Q Consensus       185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  264 (431)
                         +.+-.++.+.+..+...|+..|..  .++++.+..+++     .+..++++- ++..+.-+.-++..|+..-|....
T Consensus       343 ---~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~-----~I~sfvhD~-SD~FKiI~ida~rsLsl~Fp~k~~  411 (898)
T COG5240         343 ---KEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN-----LIPSFVHDM-SDGFKIIAIDALRSLSLLFPSKKL  411 (898)
T ss_pred             ---hhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH-----HHHHHHHhh-ccCceEEeHHHHHHHHhhCcHHHH
Confidence               333445555555555555554433  334444443332     223333222 223333333333333322121111


Q ss_pred             --------HHHHhCC-------HHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHH-H----HHHCC--------ChH
Q 014088          265 --------AIIEAGI-------IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK-F----LVSQG--------CIK  316 (431)
Q Consensus       265 --------~l~~~~~-------i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~----l~~~~--------~l~  316 (431)
                              .+.+.|.       +..+.+++. .+++-++.|+..|+.+...+...+.. .    +-+.|        .+.
T Consensus       412 s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvr  490 (898)
T COG5240         412 SYLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVR  490 (898)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHH
Confidence                    1112222       222222222 14455666666666666554322111 0    00111        133


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088          317 PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       317 ~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  395 (431)
                      .+.+-+--++.-++..|+.+|.++.-..+..               .........+.+.+++.+.++|++|.-.+..+-
T Consensus       491 hIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---------------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         491 HIYNRLILENNIVRSAAVQALSKFALNISDV---------------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhccCcccc---------------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            3333333345567777777777665433221               111223455778899999999999998887654

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.10  E-value=0.00025  Score=70.79  Aligned_cols=305  Identities=16%  Similarity=0.143  Sum_probs=200.6

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088           60 AVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  138 (431)
Q Consensus        60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  138 (431)
                      .++....+++....+.+.....-...++.. +...+..+.....++.+-.+. .+.+..++...+..+..++--.+  ..
T Consensus       356 ~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~  432 (759)
T KOG0211|consen  356 LVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KE  432 (759)
T ss_pred             chhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cC
Confidence            455666666666666666655554444421 111223333444455554444 67777777777766665543322  22


Q ss_pred             hhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh
Q 014088          139 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  218 (431)
Q Consensus       139 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  218 (431)
                      .......|.+...+++..+.++.+..+.+..+-...+..-........++.+..+-....+.++...++.+..++.... 
T Consensus       433 ~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~-  511 (759)
T KOG0211|consen  433 RTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG-  511 (759)
T ss_pred             cCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence            3346788889999999999999999987766554433222334455667777777766678888889998888876433 


Q ss_pred             hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088          219 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  298 (431)
Q Consensus       219 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  298 (431)
                        ..+++...-+.+...+.+. ...+|+.|+..+..++....   ........++.++.+..+++...|...+.++..++
T Consensus       512 --~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la  585 (759)
T KOG0211|consen  512 --VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELA  585 (759)
T ss_pred             --hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHH
Confidence              3445555666677777776 78899999998888876211   11122345777887777777888888888888776


Q ss_pred             CCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC
Q 014088          299 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH  378 (431)
Q Consensus       299 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~  378 (431)
                      ...+.+    +....+++.+..+...+.+.++-.+++.|..+.+.-....               .+....+.++.|..+
T Consensus       586 ~v~g~e----i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~---------------~~~~v~pll~~L~~d  646 (759)
T KOG0211|consen  586 EVLGQE----ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESV---------------RDEEVLPLLETLSSD  646 (759)
T ss_pred             HHhccH----HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHH---------------HHHHHHHHHHHhccC
Confidence            543322    2344578888999999999999999999999887654321               123345556777778


Q ss_pred             CCHHHHHHHHHHHHH
Q 014088          379 DNTEIYEKAVKILET  393 (431)
Q Consensus       379 ~~~~v~~~a~~~l~~  393 (431)
                      ++.+++-+|..+...
T Consensus       647 ~~~dvr~~a~~a~~~  661 (759)
T KOG0211|consen  647 QELDVRYRAILAFGS  661 (759)
T ss_pred             cccchhHHHHHHHHH
Confidence            888888777665543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.07  E-value=2.1e-05  Score=68.58  Aligned_cols=188  Identities=14%  Similarity=0.098  Sum_probs=120.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCC--hHHHHHHHH--cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhh
Q 014088           69 SSPTDDVREQAVWALGNVAGDS--PKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA  144 (431)
Q Consensus        69 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  144 (431)
                      .+.++..|..++.-|..+....  ......+..  ...+..+...+ .+....+...|+.++..++..-...-......+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            5578999999999999987544  111122211  13445566666 566778999999999999987544433445789


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh---hhhH
Q 014088          145 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD---MQTQ  221 (431)
Q Consensus       145 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~---~~~~  221 (431)
                      +|.|++.+.+++..++..|..+|..++...+.... +    .++.+.....+.++.+|..++..+..+....+   ....
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            99999999999999999999999999987651111 1    14667777888999999999999999876544   1111


Q ss_pred             H-HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHH
Q 014088          222 C-IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  263 (431)
Q Consensus       222 ~-~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  263 (431)
                      . ..-..+++.+.+.+.+. ++++|..|-.++..+....++..
T Consensus       171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a  212 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERA  212 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhh
Confidence            1 11125778889999999 99999999999988866434433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.05  E-value=0.0018  Score=61.91  Aligned_cols=234  Identities=18%  Similarity=0.127  Sum_probs=156.8

Q ss_pred             cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhcCCChHHHHHHHHc-
Q 014088           27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-----TDDVREQAVWALGNVAGDSPKCRDLVLSN-  100 (431)
Q Consensus        27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-  100 (431)
                      ..+++.+...|++||+|+...++..|+.+.+.|..+.++..|+..     +.++.-...+.|.-++...+..+..+.+. 
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~  121 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH  121 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence            456789999999999999999999999999999999999999875     78888888999888887777777665554 


Q ss_pred             CChHHHHHHhccc----------------cchhHHHHHHHHHHHhhcCCCCCChhh----HhhhHHHHHHhh---c--CC
Q 014088          101 GALMPLLAQFNEH----------------AKLSMLRNATWTLSNFCRGKPQPLFEQ----TRPALPALERLI---H--SN  155 (431)
Q Consensus       101 ~~i~~l~~~l~~~----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~----~~~~i~~L~~lL---~--~~  155 (431)
                      +++..+...+...                .+......++.++.|+..+.+......    ...+++.+..++   .  .+
T Consensus       122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~  201 (446)
T PF10165_consen  122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP  201 (446)
T ss_pred             hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence            6677777766310                134556678888999988764443322    244445555552   1  12


Q ss_pred             ChHHHHHHHHHHHHhccCChHH-----------HHHHHHhCcHHHHHHhcCC-----C---CcccHHHHHHHHhHhhcCC
Q 014088          156 DDEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVCPRLVELLRH-----P---SPSVLIPALRTVGNIVTGD  216 (431)
Q Consensus       156 ~~~v~~~a~~~L~~l~~~~~~~-----------~~~~~~~~~i~~L~~ll~~-----~---~~~v~~~a~~~l~~l~~~~  216 (431)
                      ......+++.+|.|+--.....           .........+..++.+|..     .   -.+.....+.+|.+++...
T Consensus       202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~  281 (446)
T PF10165_consen  202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA  281 (446)
T ss_pred             chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence            3467888888888773211111           0001112345566666532     1   1246677888888888876


Q ss_pred             hhhhHHHh----------------hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHH
Q 014088          217 DMQTQCII----------------NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  261 (431)
Q Consensus       217 ~~~~~~~~----------------~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  261 (431)
                      ...++.+.                ...+-..|++++.+. .+.+|..+...+-.+|..+..
T Consensus       282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vaellf~Lc~~d~~  341 (446)
T PF10165_consen  282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAELLFVLCKEDAS  341 (446)
T ss_pred             HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHHHHHHHhhhHH
Confidence            54433332                224456788888888 688999888888888865444

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.04  E-value=1.5e-05  Score=51.90  Aligned_cols=55  Identities=22%  Similarity=0.552  Sum_probs=47.6

Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          242 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       242 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                      +.+|..|+|+|++++...++....... .+++.|+.+|.+++..||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999998877777776544 4899999999999999999999999875

...

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.03  E-value=1.6e-05  Score=57.67  Aligned_cols=86  Identities=23%  Similarity=0.267  Sum_probs=68.5

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS   99 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   99 (431)
                      .|++.|.+++++.+|..++++|+.+-.  +         .+++.|+.+++++++.+|..++++|+.+-           .
T Consensus         3 ~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------~   60 (88)
T PF13646_consen    3 ALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG-----------D   60 (88)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------H
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------C
Confidence            455578678899999999999995421  1         35999999999999999999999999983           1


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHH
Q 014088          100 NGALMPLLAQFNEHAKLSMLRNATWTLS  127 (431)
Q Consensus       100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~  127 (431)
                      ...++.|.+.+.++.+..++..|.++|+
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            2278889999977677778888888874

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=0.00045  Score=66.74  Aligned_cols=239  Identities=17%  Similarity=0.196  Sum_probs=141.4

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS   99 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   99 (431)
                      .|.+.|...+++.+|..++.-|+-...++...       .+-+.+-..|...+...-+.|...++-+--.... .     
T Consensus       417 yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~-----  483 (929)
T KOG2062|consen  417 YLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-Q-----  483 (929)
T ss_pred             HHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-H-----
Confidence            44456666666677777766665444322111       1234455555555555555555555544322211 0     


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088          100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ  179 (431)
Q Consensus       100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  179 (431)
                       .+++.+...-...+.+.+.+-..--++...-..       ....=+.+-+++.+.|+-+|.....++.---.....   
T Consensus       484 -eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---  552 (929)
T KOG2062|consen  484 -EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---  552 (929)
T ss_pred             -HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---
Confidence             023334444434445555554333333322221       124556677888888998888877766522111111   


Q ss_pred             HHHHhCcHHHHHHh-cCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC
Q 014088          180 AVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  258 (431)
Q Consensus       180 ~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  258 (431)
                          .+++..|+.. .++.+.+||+.|..+|+-++...++         ..+..+++|..++++.||..++.+|+=.|.+
T Consensus       553 ----nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAG  619 (929)
T KOG2062|consen  553 ----NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAG  619 (929)
T ss_pred             ----hhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence                1456667766 5778899999999999998876663         3577888888888999999999999988875


Q ss_pred             CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088          259 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  302 (431)
Q Consensus       259 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  302 (431)
                      .-. ..      .+..|-.+..++..-||+.|+-+++-+....+
T Consensus       620 tG~-~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t  656 (929)
T KOG2062|consen  620 TGL-KE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT  656 (929)
T ss_pred             CCc-HH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence            221 11      22333344456666788888888887766544

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.0062  Score=61.21  Aligned_cols=312  Identities=14%  Similarity=0.091  Sum_probs=186.1

Q ss_pred             CChHHHHHHHHHHHHHcCC--ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           29 CFGAVQFEAAWALTNIASG--TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        29 ~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      .++.-+..|++.+++++..  .+..-+..++.-+++.+...++++.-.+|..|+|+++.++...-.  +...-..+++..
T Consensus       430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~--d~~~l~~ale~t  507 (1010)
T KOG1991|consen  430 KNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK--DPNNLSEALELT  507 (1010)
T ss_pred             cChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHH
Confidence            3467778999999988741  112222334445677888888999999999999999999943211  111122356777


Q ss_pred             HHHhccccchhHHHHHHHHHHHhhcCCCCCCh---hhHhhhHHHHHHhhcCCChHHHHHHHHHHH-HhccCChHHHHHHH
Q 014088          107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVI  182 (431)
Q Consensus       107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~  182 (431)
                      .+.|..+.+-.++..|+-+|..+..+.+....   ....+.+..++++.+.-+.+....++..+. ..+..-......+.
T Consensus       508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~  587 (1010)
T KOG1991|consen  508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC  587 (1010)
T ss_pred             HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            88886688889999999999999988744422   233556667777777666666666555543 23332222222232


Q ss_pred             HhCcHHHHHHhcCC---CCccc---HHHHHHHHhHhh---cCChhh--hHHHhhcCChHHHHHHhcccchhhHHHHHHHH
Q 014088          183 EAGVCPRLVELLRH---PSPSV---LIPALRTVGNIV---TGDDMQ--TQCIINHQALPCLLDLLTQNYKKSIKKEACWT  251 (431)
Q Consensus       183 ~~~~i~~L~~ll~~---~~~~v---~~~a~~~l~~l~---~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  251 (431)
                      + .+...+.+++..   .++..   ...|.++|..+.   ..-+..  .-.-++..+++.+-.+|++. -.++-++++..
T Consensus       588 q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei  665 (1010)
T KOG1991|consen  588 Q-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEI  665 (1010)
T ss_pred             H-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            2 445556666653   22222   233333333332   111111  11123445567777777777 77888888888


Q ss_pred             HHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHH-HCCChHHHHhhcCCC--CHH
Q 014088          252 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLLNCP--DPR  328 (431)
Q Consensus       252 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~--~~~  328 (431)
                      +.+++...++..-.+++  +++.+.+.+......--....-+|.|+...+.+...+.-. ..-+...+..++.+.  ...
T Consensus       666 ~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~  743 (1010)
T KOG1991|consen  666 VSSLTFLSKEISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDS  743 (1010)
T ss_pred             HhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchH
Confidence            88887765555555555  6788888888877777888899999988776543222110 011222333344432  222


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 014088          329 IVTVCLEGLENILKAGEA  346 (431)
Q Consensus       329 v~~~al~~L~~l~~~~~~  346 (431)
                      =...|++.+.-++-.+..
T Consensus       744 d~~~a~kLle~iiL~~kg  761 (1010)
T KOG1991|consen  744 DCESACKLLEVIILNCKG  761 (1010)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            234466666666655543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.0054  Score=59.35  Aligned_cols=263  Identities=13%  Similarity=0.131  Sum_probs=155.1

Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChHHHHH
Q 014088          103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQA  180 (431)
Q Consensus       103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~  180 (431)
                      +..+.+-| .+.|+...--|+.+++|+-...      ....+-+-+-++|.+++  .-+++.++.|+..+.+..++... 
T Consensus       113 in~iknDL-~srn~~fv~LAL~~I~niG~re------~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~-  184 (938)
T KOG1077|consen  113 INSIKNDL-SSRNPTFVCLALHCIANIGSRE------MAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN-  184 (938)
T ss_pred             HHHHHhhh-hcCCcHHHHHHHHHHHhhccHh------HHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC-
Confidence            34455555 5667888888999999986542      22233344457777653  56788888899888887765432 


Q ss_pred             HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc------------chhhHHHHH
Q 014088          181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN------------YKKSIKKEA  248 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------------~~~~v~~~a  248 (431)
                        ..+..+.++.+|.+.+-.+...+...+..++..+++.....+. ..+..|..+....            +.+-++...
T Consensus       185 --~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl  261 (938)
T KOG1077|consen  185 --PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL  261 (938)
T ss_pred             --hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence              2267899999999988889888999998888877654432221 1222222222110            146677777


Q ss_pred             HHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccC--CHh-----HHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHH
Q 014088          249 CWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA--EFE-----IKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPL  318 (431)
Q Consensus       249 ~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~--~~~-----v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L  318 (431)
                      ++.|.++-. .++..+..+.+  +++.++.-.+..  ...     .+...+.-..+++.+-  +++....     .+..|
T Consensus       262 ~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~-----~~~~L  334 (938)
T KOG1077|consen  262 LRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR-----AVNQL  334 (938)
T ss_pred             HHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH-----HHHHH
Confidence            888777744 23344443333  333333333311  111     1122222222333222  2222222     57778


Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHHHhcCC
Q 014088          319 CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       319 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~  397 (431)
                      .+++.+.++.++-.+++.++.++.....             ...++..  .+.|...++ ..+-.++++|.++|..+++.
T Consensus       335 g~fls~rE~NiRYLaLEsm~~L~ss~~s-------------~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~  399 (938)
T KOG1077|consen  335 GQFLSHRETNIRYLALESMCKLASSEFS-------------IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV  399 (938)
T ss_pred             HHHhhcccccchhhhHHHHHHHHhccch-------------HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence            8888888888888888888887765332             2222222  344444444 67788888888888888775


Q ss_pred             C
Q 014088          398 E  398 (431)
Q Consensus       398 e  398 (431)
                      +
T Consensus       400 ~  400 (938)
T KOG1077|consen  400 S  400 (938)
T ss_pred             h
Confidence            5

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.99  E-value=0.004  Score=61.94  Aligned_cols=166  Identities=17%  Similarity=0.167  Sum_probs=128.1

Q ss_pred             CCChHHHHHHHHH-HHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           28 CCFGAVQFEAAWA-LTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        28 s~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      +.++.-|..|++- |..++.+.+ ..      -..+.+++...+.+.++++-+-.=|.+.+...|+  ..+.   +++.+
T Consensus        30 s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL---avNti   97 (757)
T COG5096          30 SSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL---AVNTI   97 (757)
T ss_pred             ccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHH
Confidence            3445667777664 445555432 21      2456777777788999999888888888887774  2333   46778


Q ss_pred             HHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 014088          107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV  186 (431)
Q Consensus       107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  186 (431)
                      .+-+ +++|+.+|..|++.++.+=.      ......+++.+.+++.++++.||+.|+.++.++-+-+++.   ..+.|.
T Consensus        98 ~kDl-~d~N~~iR~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~  167 (757)
T COG5096          98 QKDL-QDPNEEIRGFALRTLSLLRV------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGL  167 (757)
T ss_pred             Hhhc-cCCCHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccH
Confidence            8888 88999999999999988633      3455788999999999999999999999999998776543   556688


Q ss_pred             HHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088          187 CPRLVELLRHPSPSVLIPALRTVGNIVTG  215 (431)
Q Consensus       187 i~~L~~ll~~~~~~v~~~a~~~l~~l~~~  215 (431)
                      +..+..++.+.+|.+..+|+.++..+...
T Consensus       168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         168 IDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            88899999999999999999999888654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.011  Score=60.12  Aligned_cols=263  Identities=13%  Similarity=0.101  Sum_probs=154.1

Q ss_pred             hhhhhHHH---HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcC
Q 014088           13 ISLFVDQF---FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAG   88 (431)
Q Consensus        13 ~~~~v~~~---lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~   88 (431)
                      +|..|+-.   |.+.|. +.+..++-.|+..++.++...+..   +. ..+|...+.++.- .++..-..++-+|+.++.
T Consensus       335 v~eivE~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~  409 (1133)
T KOG1943|consen  335 VPEIVEFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELAL  409 (1133)
T ss_pred             cHHHHHHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence            55555533   333343 344589999999999998866522   22 2356666665554 346666688899999985


Q ss_pred             CChHHHHHHHHcCChHHHHHHhc-------cccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHH-HHhhcCCChHH
Q 014088           89 DSPKCRDLVLSNGALMPLLAQFN-------EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL-ERLIHSNDDEV  159 (431)
Q Consensus        89 ~~~~~~~~i~~~~~i~~l~~~l~-------~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L-~~lL~~~~~~v  159 (431)
                      ..--.-..+.  ..++.+++.|.       .+....+|..||.++|.+++.. +.........+.+.| ...+-+.+...
T Consensus       410 rGlLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevnc  487 (1133)
T KOG1943|consen  410 RGLLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNC  487 (1133)
T ss_pred             cCCcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhH
Confidence            4321111111  24555555552       2335679999999999999885 322222333344433 33444667777


Q ss_pred             HHHHHHHHHHhc-cCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc
Q 014088          160 LTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ  238 (431)
Q Consensus       160 ~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  238 (431)
                      |..|..++.... +... . .     .+++ ++...+.-....+.++...+..-....+.+...+++    +.+.+-+.+
T Consensus       488 RRAAsAAlqE~VGR~~n-~-p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~----~L~t~Kv~H  555 (1133)
T KOG1943|consen  488 RRAASAALQENVGRQGN-F-P-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN----HLLTKKVCH  555 (1133)
T ss_pred             hHHHHHHHHHHhccCCC-C-C-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH----HHHhccccc
Confidence            888888876443 3211 0 0     1111 122222223334555666665555555555554443    122222555


Q ss_pred             cchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          239 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       239 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      = +..+|+.++|+|.+|+...++.    .....++++++.....+...+.-+..+.+.++.
T Consensus       556 W-d~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  556 W-DVKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             c-cHHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            5 7999999999999998754543    334578889988888888877766666666554

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.96  E-value=0.0035  Score=59.73  Aligned_cols=189  Identities=17%  Similarity=0.155  Sum_probs=123.6

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhc-----cCCh
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLS-----DGTN  175 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~-----~~~~  175 (431)
                      .+..++.......++..+..++.+++.+.-..+...  ....++..+..-+ ...+.+.+..++..+..++     ++++
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~  267 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP  267 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence            566677777667778888899999998886632222  3345555555544 3334444444444443333     3333


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh--------hhHHHhhc----CChHHHHHHhcccchhh
Q 014088          176 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM--------QTQCIINH----QALPCLLDLLTQNYKKS  243 (431)
Q Consensus       176 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~--------~~~~~~~~----~~l~~L~~lL~~~~~~~  243 (431)
                      .. .     ..+..++.++.+  +++...+.+.++-+....+.        ..+.+.+.    .++|.+++..+.. +..
T Consensus       268 ~~-~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~  338 (415)
T PF12460_consen  268 LA-T-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDE  338 (415)
T ss_pred             hH-H-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-Chh
Confidence            22 2     345677888877  56788888888888876221        22222222    3466777777766 566


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088          244 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       244 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      .|.....+|+++..+-|...-.---..++|.+++.|..++.+++..++.+|..+....
T Consensus       339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            8888899999999865643322112458999999999999999999999999998866

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.013  Score=58.93  Aligned_cols=75  Identities=20%  Similarity=0.210  Sum_probs=50.6

Q ss_pred             hhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCChH
Q 014088           15 LFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPK   92 (431)
Q Consensus        15 ~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~   92 (431)
                      .++.+.+...+. |+.--+|.+|+|+++.++...  ..+...-..+++...+.|. +.+-.++-.|+-+|..+.++.+.
T Consensus       461 ~flv~hVfP~f~-s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~  536 (1010)
T KOG1991|consen  461 YFLVNHVFPEFQ-SPYGYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQ  536 (1010)
T ss_pred             HHHHHHhhHhhc-CchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence            344444444444 555689999999999998522  2222222346677777776 67788888999999988776553

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.94  E-value=4.8e-05  Score=55.06  Aligned_cols=87  Identities=24%  Similarity=0.336  Sum_probs=69.8

Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088          103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  182 (431)
Q Consensus       103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  182 (431)
                      ++.|++.+.+++++.++..++++|+.+-          ....+|.+..+++++++.++..++++|+.+.           
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG-----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence            5678888878889999999999999442          2368999999999999999999999999873           


Q ss_pred             HhCcHHHHHHhcCCCC-cccHHHHHHHHh
Q 014088          183 EAGVCPRLVELLRHPS-PSVLIPALRTVG  210 (431)
Q Consensus       183 ~~~~i~~L~~ll~~~~-~~v~~~a~~~l~  210 (431)
                      ....++.|...+.+++ ..++..++.+|+
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            1246788999887755 455788888774

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.93  E-value=0.00025  Score=65.17  Aligned_cols=270  Identities=16%  Similarity=0.153  Sum_probs=144.4

Q ss_pred             cccchhHHHHHHHHHHHhhcCC-----CCCChh-hHhh-hHHHHH-----Hh-hcCCChHHHHHHHHHHHHhccCChHHH
Q 014088          112 EHAKLSMLRNATWTLSNFCRGK-----PQPLFE-QTRP-ALPALE-----RL-IHSNDDEVLTDACWALSYLSDGTNDKI  178 (431)
Q Consensus       112 ~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~-~~~~-~i~~L~-----~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~  178 (431)
                      .+..+.++..+..++..+-..-     |..... ...+ +.-.+.     .. -.+.-+..+...|.++.++........
T Consensus       305 ~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~l  384 (728)
T KOG4535|consen  305 GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNL  384 (728)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCC
Confidence            5667888888888887775431     221111 1111 111111     11 112234567777888877764321110


Q ss_pred             HHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-
Q 014088          179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-  257 (431)
Q Consensus       179 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-  257 (431)
                      .--.+.-.+..+...-++.+.-++..|.++++.++-+.........-.+....+...+.+. ....|..++|+++|++. 
T Consensus       385 pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdA  463 (728)
T KOG4535|consen  385 PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDA  463 (728)
T ss_pred             CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHH
Confidence            0000000001111111223344677788888888877665555455556677777777777 78899999999999985 


Q ss_pred             ---C--CHHHHHHHHHhCCHHHHHHHHcc---CCHhHHHHHHHHHHHhcCCCCH--HHHHHHHHCCChHHHHhhc-CCCC
Q 014088          258 ---G--NVNQIQAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLL-NCPD  326 (431)
Q Consensus       258 ---~--~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~--~~~~~l~~~~~l~~L~~ll-~~~~  326 (431)
                         +  +++..+.=+..-.+..+++....   ...+|+.++.++|+|+...-.+  +........+-+..+.... -...
T Consensus       464 L~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~  543 (728)
T KOG4535|consen  464 LIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAA  543 (728)
T ss_pred             HHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccc
Confidence               2  22222221222234455554433   2678999999999999753210  0000111112222332222 2335


Q ss_pred             HHHHHHHHHHHHHHHHhhhh-hhhcCCCCCcchHHHHHHhhccHHHHHHh-hcCCCHHHHHHHHHHHHHh
Q 014088          327 PRIVTVCLEGLENILKAGEA-EKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEIYEKAVKILETY  394 (431)
Q Consensus       327 ~~v~~~al~~L~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~  394 (431)
                      -+++-+++.++.|++++..- ...       ++..     ...++.|-.| ..+.|-.||-+|..+|..-
T Consensus       544 ~kV~WNaCya~gNLfkn~a~~lq~-------~~wA-----~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp  601 (728)
T KOG4535|consen  544 MKVRWNACYAMGNLFKNPALPLQT-------APWA-----SQAFNALTSLVTSCKNFKVRIRAAAALSVP  601 (728)
T ss_pred             cccchHHHHHHHHhhcCccccccC-------CCch-----HHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence            68999999999999986543 110       1111     1234455555 5778889988888877643

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.89  E-value=0.0019  Score=64.24  Aligned_cols=165  Identities=14%  Similarity=0.140  Sum_probs=129.5

Q ss_pred             ccchhHHHHHH-HHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 014088          113 HAKLSMLRNAT-WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  191 (431)
Q Consensus       113 ~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  191 (431)
                      +.+..-+..|+ .+++.++.+..      +..++|-+++...+.|.++++-+-.-+.+.++..|+..-     -.+..+.
T Consensus        30 s~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l-----LavNti~   98 (757)
T COG5096          30 SSNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL-----LAVNTIQ   98 (757)
T ss_pred             ccChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHH
Confidence            33444444444 57788887743      567888888888888999999999999999988875433     2356777


Q ss_pred             HhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 014088          192 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI  271 (431)
Q Consensus       192 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  271 (431)
                      +=+.++++.+|..|+++++.+=.      ..+.. .+++.+.+++.++ ++.||+.|+.++.++-.-+++   .+.+.|.
T Consensus        99 kDl~d~N~~iR~~AlR~ls~l~~------~el~~-~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~  167 (757)
T COG5096          99 KDLQDPNEEIRGFALRTLSLLRV------KELLG-NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGL  167 (757)
T ss_pred             hhccCCCHHHHHHHHHHHHhcCh------HHHHH-HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccH
Confidence            78899999999999999987733      22222 5788999999999 999999999999999875555   3446678


Q ss_pred             HHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          272 IGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       272 i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      +..+..++.+.++.+..+|+.++..+-.
T Consensus       168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         168 IDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            8888899999999999999999999854

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.84  E-value=0.00015  Score=52.99  Aligned_cols=94  Identities=18%  Similarity=0.311  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 014088          245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC  324 (431)
Q Consensus       245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~  324 (431)
                      |+.++.+|+.++.+-+.......+. ++++++..+.+++++||..|+.+|.|++.....+....+.+  +.+.|..+...
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcC
Confidence            6778888888876544445555553 89999999999999999999999999987665455554444  78888889988


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 014088          325 PDPRIVTVCLEGLENILK  342 (431)
Q Consensus       325 ~~~~v~~~al~~L~~l~~  342 (431)
                      .++.++. +.+.|-++++
T Consensus        80 ~d~~Vr~-~a~~Ld~llk   96 (97)
T PF12755_consen   80 PDENVRS-AAELLDRLLK   96 (97)
T ss_pred             CchhHHH-HHHHHHHHhc
Confidence            8988876 4577777764

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=0.0099  Score=54.48  Aligned_cols=225  Identities=16%  Similarity=0.095  Sum_probs=161.5

Q ss_pred             hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC---------hHHHHHHHHhCcHHHHHHhcCCCCcc------cH
Q 014088          138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT---------NDKIQAVIEAGVCPRLVELLRHPSPS------VL  202 (431)
Q Consensus       138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~~~~~~~i~~L~~ll~~~~~~------v~  202 (431)
                      ....-..++.++.+|.+.|.++....+..+..+...+         ...+..+++.++++.|++-+..-+.+      -.
T Consensus       120 ~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv  199 (536)
T KOG2734|consen  120 ILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGV  199 (536)
T ss_pred             HHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhh
Confidence            3445688999999999999999999999998887421         23456678889999998887653333      34


Q ss_pred             HHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc-
Q 014088          203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-  280 (431)
Q Consensus       203 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-  280 (431)
                      ..++..+-|++...+.....+.+.|.+..|+.-+... .-..-+..|..+++-+...+.+.+..+-...++..+++-+. 
T Consensus       200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~  279 (536)
T KOG2734|consen  200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV  279 (536)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence            5578888899888887888888889999988855433 24566777888888777766666666666667777776552 


Q ss_pred             ----cC----CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 014088          281 ----NA----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN  352 (431)
Q Consensus       281 ----~~----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  352 (431)
                          ++    ..+..++....|+.+....  ..+..++...+++...-+++. ....+..++++|-..+..++..     
T Consensus       280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~--~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt-----  351 (536)
T KOG2734|consen  280 YKRHDPATVDEEEMMENLFDCLCSLLMAP--ANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT-----  351 (536)
T ss_pred             hhccCCCCcCHHHHHHHHHHHHHHHhcCh--hhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch-----
Confidence                21    2456788888898888754  677888887777766656654 4455667788887777655432     


Q ss_pred             CCCcchHHHHHHhhccHHHHHHh
Q 014088          353 TGGVNLFAQAIDDAEGLEKIENL  375 (431)
Q Consensus       353 ~~~~~~~~~~l~~~~~~~~l~~l  375 (431)
                           +++..+.+..|+..+-.+
T Consensus       352 -----~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  352 -----PNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             -----HHHHHHHHHHhHHHHHHH
Confidence                 257777777788887766

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.78  E-value=2.6e-05  Score=50.69  Aligned_cols=55  Identities=36%  Similarity=0.579  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088          116 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  170 (431)
Q Consensus       116 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  170 (431)
                      +.+|..|+++|++++...+.........++|.|..+|++++++||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4689999999999887765455556688999999999999999999999999875

...

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=0.034  Score=51.13  Aligned_cols=262  Identities=11%  Similarity=0.084  Sum_probs=178.9

Q ss_pred             HHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCCC----h----hhHhhhHHHH
Q 014088           79 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPL----F----EQTRPALPAL  148 (431)
Q Consensus        79 a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~----~----~~~~~~i~~L  148 (431)
                      .+.-+..++.. |.....+++.++++.++.+| .+.+.++....+..+..|....  +...    .    ....++++.|
T Consensus       104 ~IQ~mhvlAt~-PdLYp~lveln~V~slL~LL-gHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL  181 (536)
T KOG2734|consen  104 IIQEMHVLATM-PDLYPILVELNAVQSLLELL-GHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL  181 (536)
T ss_pred             HHHHHHhhhcC-hHHHHHHHHhccHHHHHHHh-cCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence            34444455543 45667888999999999999 7888999999999999998754  1111    1    1225677777


Q ss_pred             HHhhcCCC------hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCcccHHHHHHHHhHhhcCChhhh
Q 014088          149 ERLIHSND------DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQT  220 (431)
Q Consensus       149 ~~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~  220 (431)
                      ++-++.-|      ..-....+..+-|+..-.+......++.|.+..|+.-+..  +-......|..++.-+...+....
T Consensus       182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~  261 (536)
T KOG2734|consen  182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR  261 (536)
T ss_pred             HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence            77765322      2335667778888888888877878888888888875543  334556778888888877766666


Q ss_pred             HHHhhcCChHHHHHHhc-----ccc---hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHH
Q 014088          221 QCIINHQALPCLLDLLT-----QNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  292 (431)
Q Consensus       221 ~~~~~~~~l~~L~~lL~-----~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  292 (431)
                      ...-..+++..+++-+.     ++.   ..+.-.+..-+|+.+... +..+...+....++...-++.. ....+..++.
T Consensus       262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk  339 (536)
T KOG2734|consen  262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLRE-KKVSRGSALK  339 (536)
T ss_pred             hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence            66667788888888762     211   234445555666666665 6667777776666644444444 5566778889


Q ss_pred             HHHHhcCCC-CHHHHHHHHHCCChHHHHhhcC-CC---------CHHHHHHHHHHHHHHHHhh
Q 014088          293 AISNATSGG-SNEQIKFLVSQGCIKPLCDLLN-CP---------DPRIVTVCLEGLENILKAG  344 (431)
Q Consensus       293 aL~~l~~~~-~~~~~~~l~~~~~l~~L~~ll~-~~---------~~~v~~~al~~L~~l~~~~  344 (431)
                      +|-....+. ..+.+..+++..++..++.++- .+         ..+.-++.+..|+.++...
T Consensus       340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~  402 (536)
T KOG2734|consen  340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL  402 (536)
T ss_pred             HHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence            998887654 3467778888878887776543 22         2356678888888888766

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.74  E-value=0.0084  Score=59.71  Aligned_cols=281  Identities=10%  Similarity=0.079  Sum_probs=170.5

Q ss_pred             HhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088           22 FHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG  101 (431)
Q Consensus        22 v~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  101 (431)
                      +..+..+..+-++..|+++++..++  ......+ ..+++..|+++....+.++.-..+.+|+..+.-+++. ....+..
T Consensus       496 v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~sk  571 (1005)
T KOG2274|consen  496 VNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESK  571 (1005)
T ss_pred             HHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcc
Confidence            4445556667888888888888774  2221111 1367778888888788899889999999999888764 3445556


Q ss_pred             ChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCC----hHHHHHHHHHHHHhccCChH
Q 014088          102 ALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTND  176 (431)
Q Consensus       102 ~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~  176 (431)
                      +.+..+.+.. .+.||.+...+-.++..++... ...-.+....+|.+++.++.++    +....-++..|..+.++.+.
T Consensus       572 I~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~  650 (1005)
T KOG2274|consen  572 ICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS  650 (1005)
T ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC
Confidence            6666666653 5667877777778888887642 1112234578999999998765    56666777777777766543


Q ss_pred             HHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChH--HHHHHhcccchhhHHHHHHHHHH
Q 014088          177 KIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP--CLLDLLTQNYKKSIKKEACWTIS  253 (431)
Q Consensus       177 ~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~--~L~~lL~~~~~~~v~~~a~~~L~  253 (431)
                      -.....-.-+++.+.++. .+++..+...+-.||..+......+...--..++..  .+++.+..--+++.-..++..+|
T Consensus       651 pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG  730 (1005)
T KOG2274|consen  651 PLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVG  730 (1005)
T ss_pred             CccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHh
Confidence            332233335678888875 446778888899999998876554443333333333  33333321112233333333444


Q ss_pred             Hh----hcCCHHHHHHHHHhCCHHHHH-HHHccCCHhHHHHHHHHHHHhcCCCCHHHHHH
Q 014088          254 NI----TAGNVNQIQAIIEAGIIGPLV-NLLLNAEFEIKKEAAWAISNATSGGSNEQIKF  308 (431)
Q Consensus       254 nl----~~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  308 (431)
                      .+    ..+-+......++. ++..++ ++-+.+...+...-+.+++++...........
T Consensus       731 ~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~F  789 (1005)
T KOG2274|consen  731 PLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNF  789 (1005)
T ss_pred             HHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence            33    32212222222221 233333 33344577888888889998887654333333

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.73  E-value=0.038  Score=55.30  Aligned_cols=227  Identities=14%  Similarity=0.149  Sum_probs=153.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHH
Q 014088           70 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE  149 (431)
Q Consensus        70 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~  149 (431)
                      +..|.+...+.|+++..+...........  .++...+..+..+..+.++..|+++++..++.  ........+++..|.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~~~p~ild~L~  536 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLSLQPMILDGLL  536 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccccchHHHHHHH
Confidence            45677777899999987754222111111  13455666665667788888888888888733  222333456777888


Q ss_pred             HhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc--CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcC
Q 014088          150 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ  227 (431)
Q Consensus       150 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  227 (431)
                      ++....+.++......+|+.+++-+++... ..++.+.|.++.++  .+++|.+...+-.++..++.....+ . -+...
T Consensus       537 qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g-~m~e~  613 (1005)
T KOG2274|consen  537 QLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-G-PMQER  613 (1005)
T ss_pred             HHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-c-chHHH
Confidence            888888899999999999999988876644 55667778877775  3467777777777776666422111 1 12336


Q ss_pred             ChHHHHHHhcccch----hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH-ccCCHhHHHHHHHHHHHhcCCCC
Q 014088          228 ALPCLLDLLTQNYK----KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGS  302 (431)
Q Consensus       228 ~l~~L~~lL~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~  302 (431)
                      .+|.+++.|..+ .    ......++-.|..+.++.+.-....+-.-++|.+.++. ++++..+-.++-.+|..+.....
T Consensus       614 ~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  614 LIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            789999999876 4    56677777788877774332233333334678888876 55688888999999999888754


Q ss_pred             HH
Q 014088          303 NE  304 (431)
Q Consensus       303 ~~  304 (431)
                      +.
T Consensus       693 eq  694 (1005)
T KOG2274|consen  693 EQ  694 (1005)
T ss_pred             HH
Confidence            33

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.70  E-value=0.00031  Score=51.28  Aligned_cols=67  Identities=16%  Similarity=0.347  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088           33 VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS   99 (431)
Q Consensus        33 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   99 (431)
                      ++...+++|+|++..++..++.+.+.|++|.++....  ..+|-+++.|++++.+++..+++++..+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            3567889999999999999999999999999999654  478999999999999999999998877765

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.70  E-value=0.051  Score=51.86  Aligned_cols=297  Identities=16%  Similarity=0.139  Sum_probs=169.5

Q ss_pred             ChHHHHHHHHHHHHHcCCChHhH-----HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhcCCCh-HHHHH
Q 014088           30 FGAVQFEAAWALTNIASGTSENT-----RVVIDHGAVPIFVRLLSS-----P--TDDVREQAVWALGNVAGDSP-KCRDL   96 (431)
Q Consensus        30 ~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~~l~~~~~-~~~~~   96 (431)
                      +.+.....+.++.++.....+..     ....+..+++.+....-.     .  ++.+...+...+..+...-+ +.+..
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            56777788888887765332222     334444578888776532     1  24555666666666654332 22222


Q ss_pred             HHHcCChHHHHHHhc---------cccc--hhHHHHHHHHH-HHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHH
Q 014088           97 VLSNGALMPLLAQFN---------EHAK--LSMLRNATWTL-SNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDA  163 (431)
Q Consensus        97 i~~~~~i~~l~~~l~---------~~~~--~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a  163 (431)
                      +     +..+..++.         ...+  ..........+ +-++.-++.........++..++.+.. ..++..+..+
T Consensus       136 ~-----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~  210 (415)
T PF12460_consen  136 I-----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAA  210 (415)
T ss_pred             H-----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHH
Confidence            2     223333331         0001  01112222222 222222222332244457777777755 4468888999


Q ss_pred             HHHHHHhccCC--hHHHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHh----hcCChhhhHHHhhcCChHHHHHHh
Q 014088          164 CWALSYLSDGT--NDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNI----VTGDDMQTQCIINHQALPCLLDLL  236 (431)
Q Consensus       164 ~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l----~~~~~~~~~~~~~~~~l~~L~~lL  236 (431)
                      +.+++.++..-  ++...     .++..+...+ ....+..+..++.++..+    .........     ..+..|++++
T Consensus       211 ~~~la~LvNK~~~~~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL  280 (415)
T PF12460_consen  211 LQLLASLVNKWPDDDDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELL  280 (415)
T ss_pred             HHHHHHHHcCCCChhhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHh
Confidence            99998887542  22122     3344444444 333444444444444333    322222222     3466788888


Q ss_pred             cccchhhHHHHHHHHHHHhhcCCHH--------HHHHHHHhC----CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHH
Q 014088          237 TQNYKKSIKKEACWTISNITAGNVN--------QIQAIIEAG----IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE  304 (431)
Q Consensus       237 ~~~~~~~v~~~a~~~L~nl~~~~~~--------~~~~l~~~~----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  304 (431)
                      .+   +++...++..++-+....++        ..+.+.++.    ++|.+++-....+.+.|.+.+.+|+++..+-+..
T Consensus       281 ~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~  357 (415)
T PF12460_consen  281 SS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKS  357 (415)
T ss_pred             CC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHH
Confidence            75   46678888888877765232        334444444    4666766666667779999999999999876533


Q ss_pred             HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088          305 QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       305 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  345 (431)
                      .... .-..+++.|++.++.++.+++..++.+|..++....
T Consensus       358 vl~~-~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~  397 (415)
T PF12460_consen  358 VLLP-ELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP  397 (415)
T ss_pred             HHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence            3222 123478899999999999999999999999988763

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.64  E-value=0.022  Score=52.02  Aligned_cols=204  Identities=12%  Similarity=0.110  Sum_probs=146.0

Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH-----HHHHHHHh--CcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088          142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTND-----KIQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVT  214 (431)
Q Consensus       142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  214 (431)
                      .+++..|+..|..-+-+.++.+...+.++.....+     ..+.+...  .++..|+..-  +++++...+-..|..++.
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence            57888899999988999999999999998765322     22323321  2333333332  456677888888888777


Q ss_pred             CChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhC---CHHHHHHHHccCCHhHHHHHH
Q 014088          215 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGPLVNLLLNAEFEIKKEAA  291 (431)
Q Consensus       215 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~v~~~a~  291 (431)
                      . +...+.++....+..+.+.+..+ +-++...|..++..+...........+..+   ++.....++.+++.-+|+.++
T Consensus       153 ~-e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl  230 (335)
T PF08569_consen  153 H-ESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL  230 (335)
T ss_dssp             S-HHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred             h-HHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence            5 44566777888999999999988 999999999999997765576666666543   577788888999999999999


Q ss_pred             HHHHHhcCCCCH--HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 014088          292 WAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN  349 (431)
Q Consensus       292 ~aL~~l~~~~~~--~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~  349 (431)
                      ..|+.+......  -..+++.+..-+..++.+|+++...++-.|..++.-++.++.+..+
T Consensus       231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~  290 (335)
T PF08569_consen  231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPP  290 (335)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHH
T ss_pred             HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChH
Confidence            999999875421  2234444555688889999999999999999999988877766443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.62  E-value=0.00018  Score=43.38  Aligned_cols=40  Identities=38%  Similarity=0.738  Sum_probs=36.3

Q ss_pred             hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088           49 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG   88 (431)
Q Consensus        49 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   88 (431)
                      ++.+..+.+.|+++.|+++++++++.++..++|+|.|++.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3477889999999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.0056  Score=62.71  Aligned_cols=231  Identities=14%  Similarity=0.048  Sum_probs=143.8

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCCC--hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 014088          112 EHAKLSMLRNATWTLSNFCRGKPQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  189 (431)
Q Consensus       112 ~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  189 (431)
                      ++.+..++..+..+|..++...+...  ......+...+.+-+++.....+...+.+|..+....+...-.++. ..++.
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~I~E  742 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-KLIPE  742 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHH
Confidence            45578899999999999998842222  2223455566667777778888888899998887665522122333 23344


Q ss_pred             HHHhcCCCCcccHHHHHHHHhHhhcC-------ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH
Q 014088          190 LVELLRHPSPSVLIPALRTVGNIVTG-------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ  262 (431)
Q Consensus       190 L~~ll~~~~~~v~~~a~~~l~~l~~~-------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  262 (431)
                      ++-.+...+...+..+..+|-.++..       ++. ....++ ..++.+...+-.. ...++...+.+++.+.......
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~il~e~~~~  819 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHILQEFKNI  819 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHHHHHHhcc
Confidence            44444777788888888888888731       111 011111 3344444444333 3333333344555554321121


Q ss_pred             HHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088          263 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  342 (431)
Q Consensus       263 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~  342 (431)
                      ...-.-.+++..+..+|.+++.+++..|+.++.-++..-+...... ....+++.+..+.+.....++..+-..|..+++
T Consensus       820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            2112223456667778888999999999999999988765444333 223478888888888788899888888888888


Q ss_pred             hhhhh
Q 014088          343 AGEAE  347 (431)
Q Consensus       343 ~~~~~  347 (431)
                      .....
T Consensus       899 kfg~~  903 (1176)
T KOG1248|consen  899 KFGAE  903 (1176)
T ss_pred             HhCHH
Confidence            76554

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.60  E-value=0.00045  Score=63.58  Aligned_cols=300  Identities=15%  Similarity=0.125  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC-----CChHHHHHHHHcCChHH-
Q 014088           32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-----DSPKCRDLVLSNGALMP-  105 (431)
Q Consensus        32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~~~~i~~-  105 (431)
                      .+|..++.+|..++.+-.-.+..+++  +...+...+....+.++..+..++..+-.     ..|+..+.-...+.+-. 
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~  347 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM  347 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence            67888888888887754444444432  34555556677889999999988887742     12211111111111111 


Q ss_pred             -----HHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088          106 -----LLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ  179 (431)
Q Consensus       106 -----l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  179 (431)
                           .-....++..+..+..+|-.+.++....... .-......+-.+..+-.+.+.-++..|.+++.-+.-++.-+..
T Consensus       348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d  427 (728)
T KOG4535|consen  348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD  427 (728)
T ss_pred             HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence                 1112223445566777888888876543111 1101111222222333344556777788888777666554433


Q ss_pred             HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC----Chh---hhHHHhhcCChHHHHHHh---cccchhhHHHHHH
Q 014088          180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DDM---QTQCIINHQALPCLLDLL---TQNYKKSIKKEAC  249 (431)
Q Consensus       180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~----~~~---~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~  249 (431)
                      ...-......+...+.+..-..+..++++++|++..    .+.   ....+.. -.+..+...-   ... +.+|+..+.
T Consensus       428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad-~dkV~~nav  505 (728)
T KOG4535|consen  428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASAD-KDKVKSNAV  505 (728)
T ss_pred             HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhh-hhhhhhHHH
Confidence            333335556666667776778899999999999742    111   2222221 1122222211   223 689999999


Q ss_pred             HHHHHhhcCCHHHHHHHHHh-------CCHHHHHHHH-ccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 014088          250 WTISNITAGNVNQIQAIIEA-------GIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL  321 (431)
Q Consensus       250 ~~L~nl~~~~~~~~~~l~~~-------~~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l  321 (431)
                      ++|+|+..    ..+.+.+.       +-+..+.... -.+...||-+|+.+++|+..+..-.....=....+.+.|..+
T Consensus       506 raLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~L  581 (728)
T KOG4535|consen  506 RALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSL  581 (728)
T ss_pred             HHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHH
Confidence            99999953    33333332       2222222222 223678999999999999886531000000011134555555


Q ss_pred             cC-CCCHHHHHHHHHHHHH
Q 014088          322 LN-CPDPRIVTVCLEGLEN  339 (431)
Q Consensus       322 l~-~~~~~v~~~al~~L~~  339 (431)
                      +. ..+-+++..|..+|..
T Consensus       582 v~~~~NFKVRi~AA~aL~v  600 (728)
T KOG4535|consen  582 VTSCKNFKVRIRAAAALSV  600 (728)
T ss_pred             HHHhccceEeehhhhhhcC
Confidence            54 3455666666666543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.59  E-value=0.003  Score=52.47  Aligned_cols=93  Identities=18%  Similarity=0.146  Sum_probs=73.8

Q ss_pred             CHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHh
Q 014088           72 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL  151 (431)
Q Consensus        72 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l  151 (431)
                      ++.+|..++.+++-++...+...+     ..++.+...| .++++.+|+.|+.+|.+|.......   ....++..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~ik---~k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCL-RDEDPLVRKTALLVLSHLILEDMIK---VKGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCcee---ehhhhhHHHHHH
Confidence            478899999999999976654322     2477888888 8889999999999999998764211   113344778888


Q ss_pred             hcCCChHHHHHHHHHHHHhccC
Q 014088          152 IHSNDDEVLTDACWALSYLSDG  173 (431)
Q Consensus       152 L~~~~~~v~~~a~~~L~~l~~~  173 (431)
                      +.+++++++..|..++..+...
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999876

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.58  E-value=0.0018  Score=47.37  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhh
Q 014088          287 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA  366 (431)
Q Consensus       287 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  366 (431)
                      |..++.+|..++..-......++-  .++++++.++.++++.++..|+++|.++++.....           +...+.  
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----------~l~~f~--   67 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----------ILPYFN--   67 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH--
Confidence            455666777666544434333333  38999999999999999999999999999876542           233333  


Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088          367 EGLEKIENLQSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       367 ~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  395 (431)
                      ..++.|..+..++++.|+..| ..|.+++
T Consensus        68 ~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   68 EIFDALCKLSADPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence            347778889999999998777 5555544

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.57  E-value=0.006  Score=50.65  Aligned_cols=93  Identities=24%  Similarity=0.295  Sum_probs=76.1

Q ss_pred             chhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 014088          115 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  194 (431)
Q Consensus       115 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  194 (431)
                      ++.+|.+++-+++-|+...+    ....+.+|.+...|+++++.+|+.|+.+|.+|...+--+.+    ..++..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence            47789999999999987643    33467899999999999999999999999999876543322    13347788888


Q ss_pred             CCCCcccHHHHHHHHhHhhcC
Q 014088          195 RHPSPSVLIPALRTVGNIVTG  215 (431)
Q Consensus       195 ~~~~~~v~~~a~~~l~~l~~~  215 (431)
                      .+++++++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999875

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.51  E-value=0.022  Score=51.98  Aligned_cols=204  Identities=12%  Similarity=0.074  Sum_probs=141.4

Q ss_pred             HHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhH----HHhhcCChHHHHHHhcccchhhHHHHHHHHHHH
Q 014088          179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ----CIINHQALPCLLDLLTQNYKKSIKKEACWTISN  254 (431)
Q Consensus       179 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  254 (431)
                      +.+...+.+..|+..|..-+.+.+..+..+++++.........    ..+....-+.+..++..-.++++...+...|..
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence            3466678999999999998899999999999999876432211    112222223333333332245666777777777


Q ss_pred             hhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHC---CChHHHHhhcCCCCHHHHH
Q 014088          255 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ---GCIKPLCDLLNCPDPRIVT  331 (431)
Q Consensus       255 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~~  331 (431)
                      ++.. +.....++....+..+.+.++.++.++...|..++..+...+. .....+...   .+......++.+++.-++.
T Consensus       150 c~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr  227 (335)
T PF08569_consen  150 CIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTKR  227 (335)
T ss_dssp             HTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred             HHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence            7776 7778888888889999999999999999999999999887654 344444433   3567788899999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088          332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  393 (431)
Q Consensus       332 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  393 (431)
                      .++..|+.++......+.         ....+.+..-+..+..|+.+++..++-.|=.+..-
T Consensus       228 qslkLL~ellldr~n~~v---------m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv  280 (335)
T PF08569_consen  228 QSLKLLGELLLDRSNFNV---------MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV  280 (335)
T ss_dssp             HHHHHHHHHHHSGGGHHH---------HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHchhHHHH---------HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence            999999999977655432         24566667778888888888888877666554443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.50  E-value=0.0048  Score=48.98  Aligned_cols=130  Identities=13%  Similarity=0.123  Sum_probs=103.1

Q ss_pred             HHHHHhCcHHHHHHhcCCCC------cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc-hhhHHHHHHHH
Q 014088          179 QAVIEAGVCPRLVELLRHPS------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWT  251 (431)
Q Consensus       179 ~~~~~~~~i~~L~~ll~~~~------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~  251 (431)
                      ..++..+++..|+.++.++.      .++...++.++..|..+. ......+...++..+........ +..+...|+..
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            45777899999999997754      366777888998888764 34455666677888888887663 58889999999


Q ss_pred             HHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHH
Q 014088          252 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL  309 (431)
Q Consensus       252 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l  309 (431)
                      |-++..+++...+.+.+.--++.|+..|+..+.+++.+|+..+-.+....++..++.+
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            9999998777666666665699999999999999999999999999888776655543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.49  E-value=0.002  Score=63.29  Aligned_cols=224  Identities=15%  Similarity=0.105  Sum_probs=149.8

Q ss_pred             HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhc
Q 014088           93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALSYLS  171 (431)
Q Consensus        93 ~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~  171 (431)
                      -+...++.|+...|+.+. ....+..+..+..+|..  .-  .-........++.+.+.+.+.. ..-...++.++.|++
T Consensus       496 ~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~--~i--~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa  570 (748)
T KOG4151|consen  496 ERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG--KI--DFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA  570 (748)
T ss_pred             hcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh--hc--CCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence            456677889999999998 44556667777777761  11  0111111334444554444322 223456888899998


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhh-cCChHHHHHHhcccchhhHHHHHHH
Q 014088          172 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACW  250 (431)
Q Consensus       172 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~  250 (431)
                      ..+....+.+.+...++.+-.++..+++..+..++..+.||..++.-+...+++ ...++.....+... .......++.
T Consensus       571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~  649 (748)
T KOG4151|consen  571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG  649 (748)
T ss_pred             CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence            776665566777777777777888888999999999999999887767777776 45566666666665 7788888887


Q ss_pred             HHHHhhcCCHHHHH-HHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 014088          251 TISNITAGNVNQIQ-AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  323 (431)
Q Consensus       251 ~L~nl~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  323 (431)
                      ++..++......+. ..--......+..++.+++.+++...+..+.|+. ....+....+.....++.+...-+
T Consensus       650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~-~~~~ei~~~~~~~~~~~~l~~~~~  722 (748)
T KOG4151|consen  650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF-EALFEIAEKIFETEVMELLSGLQK  722 (748)
T ss_pred             cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH-HHHHHHHHHhccchHHHHHHHHHH
Confidence            77766654333333 2222346778888999999999999999999944 344455555555555555554443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.0081  Score=61.61  Aligned_cols=243  Identities=12%  Similarity=0.095  Sum_probs=149.9

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh-HHHHHH
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLV   97 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i   97 (431)
                      ++....++.++.+|..+.+.|..++.. ++......+  ..+...|.+-+++.+...+...+.+|..|....+ +....+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            334556666789999999999999885 322222221  1344555666666677777777888877765443 333333


Q ss_pred             HHcCChHHHHHHhccccchhHHHHHHHHHHHhhc--CC---C-CCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014088           98 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR--GK---P-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  171 (431)
Q Consensus        98 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~--~~---~-~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  171 (431)
                      ..  .++-++-.+ ...+...++++..+|..++.  ..   . .+.......+++.+...+-..........+-++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            22  334444344 66678889999999888882  21   1 1123344556666655544333333333345555554


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHH
Q 014088          172 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  251 (431)
Q Consensus       172 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  251 (431)
                      ....+......-.++++.+..+|.+.+++++..|+..+..++...+...-......+++.+..++++. ...+|...-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            33222211122225667777788999999999999999999987664433333445788899988877 78888888888


Q ss_pred             HHHhhc-CCHHHHHHHHH
Q 014088          252 ISNITA-GNVNQIQAIIE  268 (431)
Q Consensus       252 L~nl~~-~~~~~~~~l~~  268 (431)
                      +-.+++ ...+....+..
T Consensus       893 lekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHHhCHHHHHhhCH
Confidence            888776 23444444443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.011  Score=57.71  Aligned_cols=219  Identities=15%  Similarity=0.101  Sum_probs=122.6

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh
Q 014088           61 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ  140 (431)
Q Consensus        61 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  140 (431)
                      +..+..+|.+.++.++-.|+.+|.+++.++...+.      +...++.++.+.++..++--.+.-|..+..    .....
T Consensus       245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~------Aa~~~i~l~~kesdnnvklIvldrl~~l~~----~~~~i  314 (948)
T KOG1058|consen  245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA------AASTYIDLLVKESDNNVKLIVLDRLSELKA----LHEKI  314 (948)
T ss_pred             HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH------HHHHHHHHHHhccCcchhhhhHHHHHHHhh----hhHHH
Confidence            34444444444555555555555554433322111      233444444444444444444444444431    11122


Q ss_pred             HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh
Q 014088          141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  219 (431)
Q Consensus       141 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  219 (431)
                      ..+++--++.+|.++|-+++..++.....++.... ..+-.+.+..+...--. =...+.+.|...++++..++...+..
T Consensus       315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~  393 (948)
T KOG1058|consen  315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV  393 (948)
T ss_pred             HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence            35666667788889999999999998888876543 11111222111111100 01134467888888888888766644


Q ss_pred             hHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc-CCHhHHHHHHHHHHHhc
Q 014088          220 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNAT  298 (431)
Q Consensus       220 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~  298 (431)
                      ..     .+++.+++.+.+. ++......+..+.......|..+..++     ..|++-+.. .+.++.+.|+|.++..+
T Consensus       394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~ii-----~~l~~~~~~irS~ki~rgalwi~GeYc  462 (948)
T KOG1058|consen  394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRASII-----EKLLETFPQIRSSKICRGALWILGEYC  462 (948)
T ss_pred             HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHHHH-----HHHHHhhhhhcccccchhHHHHHHHHH
Confidence            43     5678899999888 776666666666666655565554443     345544433 36677788888888887


Q ss_pred             CCC
Q 014088          299 SGG  301 (431)
Q Consensus       299 ~~~  301 (431)
                      ...
T Consensus       463 e~~  465 (948)
T KOG1058|consen  463 EGL  465 (948)
T ss_pred             hhh
Confidence            654

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.0059  Score=59.79  Aligned_cols=139  Identities=12%  Similarity=0.074  Sum_probs=83.3

Q ss_pred             cHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHH
Q 014088          186 VCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ  264 (431)
Q Consensus       186 ~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  264 (431)
                      .+..|.++|+. +..+.+.....++..++..++....     .++..|...+.+.   +...-+.+.|.-+....|..  
T Consensus       392 ~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhlLG~EgP~a--  461 (865)
T KOG1078|consen  392 MMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHLLGKEGPKA--  461 (865)
T ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHHHhccCCCC--
Confidence            34455555544 3456667777777777765554443     3455566666544   33444455555554321110  


Q ss_pred             HHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088          265 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  341 (431)
Q Consensus       265 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~  341 (431)
                       ......+..+...+.-.+..+|..|..++.++..... .     ....+...|.+++...+.+++..|...|.++-
T Consensus       462 -~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~-~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  462 -PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV-V-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             -CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-C-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence             0112234555555555678899999999999984332 1     12335666778888889999999988888776

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.41  E-value=0.014  Score=49.86  Aligned_cols=243  Identities=18%  Similarity=0.241  Sum_probs=150.4

Q ss_pred             hHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHh
Q 014088           31 GAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  110 (431)
Q Consensus        31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l  110 (431)
                      ..-+..|+..|.++...           +.+..+.+...+.+...+...+.+|+.....           ..++.++..+
T Consensus        19 l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-----------~Av~~l~~vl   76 (289)
T KOG0567|consen   19 LQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE-----------DAVPVLVEVL   76 (289)
T ss_pred             HHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-----------hhhHHHHHHh
Confidence            45666777777777652           2255555555555566666777777776532           3577788877


Q ss_pred             cc-ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH-H---HHHH----
Q 014088          111 NE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND-K---IQAV----  181 (431)
Q Consensus       111 ~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~---~~~~----  181 (431)
                      .. +..+-+|..|..+|.++...          ...+.+-+..+++-.+++..+..++..+-..... .   ...+    
T Consensus        77 ~desq~pmvRhEAaealga~~~~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~Svd  146 (289)
T KOG0567|consen   77 LDESQEPMVRHEAAEALGAIGDP----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVD  146 (289)
T ss_pred             cccccchHHHHHHHHHHHhhcch----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCC
Confidence            43 44567777899999988732          5667777777777777877777777655321100 0   0000    


Q ss_pred             ----HHhCcHHHHHHhc-CCCCccc-HHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh
Q 014088          182 ----IEAGVCPRLVELL-RHPSPSV-LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  255 (431)
Q Consensus       182 ----~~~~~i~~L~~ll-~~~~~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  255 (431)
                          ...+-+..+-..+ +...+.. +..+...|.|+-.  +         ..+..+.+-+..+ +.-.|.++++++|.+
T Consensus       147 Pa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-SalfrhEvAfVfGQl  214 (289)
T KOG0567|consen  147 PAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-SALFRHEVAFVFGQL  214 (289)
T ss_pred             CCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-hHHHHHHHHHHHhhc
Confidence                0001122332222 2222222 2334555544422  1         2355677777777 888999999999988


Q ss_pred             hcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 014088          256 TAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  333 (431)
Q Consensus       256 ~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  333 (431)
                      -..           -.+|.|.+.|...  ++.||.+|+.+|+.++..   +         .++.|.++++.+.+-+++.|
T Consensus       215 ~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~---------~~~vL~e~~~D~~~vv~esc  271 (289)
T KOG0567|consen  215 QSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D---------CVEVLKEYLGDEERVVRESC  271 (289)
T ss_pred             cch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H---------HHHHHHHHcCCcHHHHHHHH
Confidence            542           2577788877654  889999999999999752   2         46777788888887777776


Q ss_pred             HHHHHHH
Q 014088          334 LEGLENI  340 (431)
Q Consensus       334 l~~L~~l  340 (431)
                      .-+|.-+
T Consensus       272 ~valdm~  278 (289)
T KOG0567|consen  272 EVALDML  278 (289)
T ss_pred             HHHHHHH
Confidence            6666543

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.40  E-value=0.00055  Score=41.14  Aligned_cols=39  Identities=46%  Similarity=0.640  Sum_probs=35.4

Q ss_pred             HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088          260 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  298 (431)
Q Consensus       260 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  298 (431)
                      ++....+.+.|+++.|++++.+++.+++..++++|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            346778889999999999999889999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.01  Score=56.11  Aligned_cols=136  Identities=16%  Similarity=0.218  Sum_probs=95.3

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-cCCCCcccHHHHHHHHhHhhcCChhhhHHHh
Q 014088          146 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCII  224 (431)
Q Consensus       146 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  224 (431)
                      ..+.+++.+.++-.|.....+++.--.+..       ..+++..++.. .++.+.+|++.|+.+|+-+|....       
T Consensus       519 d~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------  584 (926)
T COG5116         519 DYINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------  584 (926)
T ss_pred             HHHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc-------
Confidence            356677888888888877766653221211       12566777777 677888999999999998876544       


Q ss_pred             hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHH
Q 014088          225 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE  304 (431)
Q Consensus       225 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  304 (431)
                        ..++..+++|..+.+..||...+.+|+-.|.+.-+..       .+..|-.++.+...-||+.|+-+++-+...++++
T Consensus       585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~  655 (926)
T COG5116         585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE  655 (926)
T ss_pred             --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence              4567788888877789999999999998887533321       2334445556677788888988888887665533

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.39  E-value=0.0015  Score=47.76  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=57.8

Q ss_pred             cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 014088          201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIE  268 (431)
Q Consensus       201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  268 (431)
                      ++...+++|+|++..+......+.+.++++.+++...-+ .+|-+|++|.+++.|++.++++....+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            467789999999999998888889999999999877432 37999999999999999998887765554

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.38  E-value=0.025  Score=48.73  Aligned_cols=188  Identities=13%  Similarity=0.155  Sum_probs=119.2

Q ss_pred             ChHHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHh-------cCCCC--c---ccHHHHHHHHhHhhcCChhhhHH
Q 014088          156 DDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVEL-------LRHPS--P---SVLIPALRTVGNIVTGDDMQTQC  222 (431)
Q Consensus       156 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~l-------l~~~~--~---~v~~~a~~~l~~l~~~~~~~~~~  222 (431)
                      +++.|+.|+.-|+.--+..++....+-. .|.+..|++=       +..+.  +   .-..+++..+..++.+ ++.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence            6777888877777655544443333322 2554444322       23222  1   2233455666666665 456677


Q ss_pred             HhhcCChHHHHHHhccc----chhhHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          223 IINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       223 ~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                      ++++.+.-.|...|+..    +-+.+|..++.+++.+.. .+++.+..+.+..++|..++.++.++.--|..|...+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            88888877777777543    247889999999999998 5678899999999999999999999988999999999998


Q ss_pred             cCCCCHHHHHHHHH--------CCChHHHHh-hcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          298 TSGGSNEQIKFLVS--------QGCIKPLCD-LLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       298 ~~~~~~~~~~~l~~--------~~~l~~L~~-ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                      ....  ....++.+        ..++..++. +.+.+++.+.+.++++-.++..+...
T Consensus       167 L~dd--~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra  222 (262)
T PF04078_consen  167 LLDD--VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA  222 (262)
T ss_dssp             HHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred             Hcch--hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence            8753  33333221        113444443 33456777778888887777765543

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.38  E-value=0.048  Score=46.81  Aligned_cols=224  Identities=16%  Similarity=0.180  Sum_probs=142.2

Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChHHHHH
Q 014088          103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQA  180 (431)
Q Consensus       103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~  180 (431)
                      +..+.+.. .+.+...+...+.+|..+...          ..+|.++..+.+.  .+-+|..|..+|+.+. .+      
T Consensus        38 i~~i~ka~-~d~s~llkhe~ay~LgQ~~~~----------~Av~~l~~vl~desq~pmvRhEAaealga~~-~~------   99 (289)
T KOG0567|consen   38 IKAITKAF-IDDSALLKHELAYVLGQMQDE----------DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP------   99 (289)
T ss_pred             HHHHHHhc-ccchhhhccchhhhhhhhccc----------hhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch------
Confidence            34444444 222444555666666665544          6888898888754  5778899999999887 22      


Q ss_pred             HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhh----HHH--------hhcCChHHHHHHhcccc-hhhHHHH
Q 014088          181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT----QCI--------INHQALPCLLDLLTQNY-KKSIKKE  247 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~----~~~--------~~~~~l~~L~~lL~~~~-~~~v~~~  247 (431)
                          ...+.+-++.+++-..++..+..++..+-.......    ...        ...+-+..+-..|.+.. ..--|..
T Consensus       100 ----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~  175 (289)
T KOG0567|consen  100 ----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR  175 (289)
T ss_pred             ----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence                234555566666777788877777766642211000    000        11122444444443331 2334556


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC--CC
Q 014088          248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN--CP  325 (431)
Q Consensus       248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~--~~  325 (431)
                      |.+.|.|+..  .+         .+..+.+-+..++.-.|.++..+++.+-...            .++.|...|.  ..
T Consensus       176 amF~LRn~g~--Ee---------aI~al~~~l~~~SalfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E  232 (289)
T KOG0567|consen  176 AMFYLRNIGT--EE---------AINALIDGLADDSALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETE  232 (289)
T ss_pred             hhhHhhccCc--HH---------HHHHHHHhcccchHHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhc
Confidence            7777777643  22         3556667777788899999999999986543            3556656554  35


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 014088          326 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  394 (431)
Q Consensus       326 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  394 (431)
                      ++.++..|+.+|..+...                       ..++.|+.+.+++.+-|++-+.-+++.+
T Consensus       233 ~pMVRhEaAeALGaIa~e-----------------------~~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  233 HPMVRHEAAEALGAIADE-----------------------DCVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             chHHHHHHHHHHHhhcCH-----------------------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            789999999999977532                       2366688889999999999888888754

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.37  E-value=0.0098  Score=47.27  Aligned_cols=126  Identities=13%  Similarity=0.104  Sum_probs=99.8

Q ss_pred             HHHHHHcCChHHHHHHhccccc-----hhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHH
Q 014088           94 RDLVLSNGALMPLLAQFNEHAK-----LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWA  166 (431)
Q Consensus        94 ~~~i~~~~~i~~l~~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~  166 (431)
                      ...+...+++..|++++.....     .++...++.++..|-.+....-......++..++...+.+  +..+...++..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            4567788899999999965553     5788889999999998853333344477888888888854  68999999999


Q ss_pred             HHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh
Q 014088          167 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  219 (431)
Q Consensus       167 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  219 (431)
                      |-++..+.+.....+.+.=-++.|+.+|+..++.++.+++..+..|....+..
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            99999988876675666556889999999999999999999888887655433

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.015  Score=57.81  Aligned_cols=216  Identities=10%  Similarity=0.089  Sum_probs=141.4

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 014088          112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  191 (431)
Q Consensus       112 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  191 (431)
                      +++-+.++.+++..+..+.+...........+++......+++.|+-+--+|...+..++.-.++        .+++.+.
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~  808 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS  808 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence            45567899999999999999765555566688999999999999999999999988888765432        4556666


Q ss_pred             Hh-cCC---CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHH-HH
Q 014088          192 EL-LRH---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ-AI  266 (431)
Q Consensus       192 ~l-l~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-~l  266 (431)
                      .. .+.   ...+.+...-.++.+++..-.+....... .++...+....++ +...|..++..++++|....-... .+
T Consensus       809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~  886 (982)
T KOG4653|consen  809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF  886 (982)
T ss_pred             HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence            63 322   22355555667777776543333322222 5667788888877 889999999999999973221111 22


Q ss_pred             HHhCCHHHHHHHHcc-CCHhHHHHHHHHHHHhcCCCCHHHHHHH--HHCCChHHHHhhcCCC-CHHHHHHHHHHHHH
Q 014088          267 IEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFL--VSQGCIKPLCDLLNCP-DPRIVTVCLEGLEN  339 (431)
Q Consensus       267 ~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l--~~~~~l~~L~~ll~~~-~~~v~~~al~~L~~  339 (431)
                      .+  ++..++.+... ++.-+|+.|+..+..+...-+.+....+  ...+....+..+.... +..++..+..++..
T Consensus       887 ~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  887 HE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             HH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            22  44555555544 4789999999999999886664544433  1223455555555433 33344444444433

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.35  E-value=0.0074  Score=61.83  Aligned_cols=162  Identities=18%  Similarity=0.153  Sum_probs=123.0

Q ss_pred             HHHHHhhcCC-CCCChhhHhhhHHHHHHhhc----CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CC
Q 014088          124 WTLSNFCRGK-PQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HP  197 (431)
Q Consensus       124 ~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~  197 (431)
                      ..+..+|... -.......+.+.|.+++..+    .++|+++..|.-+|+.+..-......     .-++.|+..+. ++
T Consensus       899 d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp  973 (1251)
T KOG0414|consen  899 DLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSP  973 (1251)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCC
Confidence            3444444433 11223344667788888875    45899999999999988765544333     45688899886 78


Q ss_pred             CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHH
Q 014088          198 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN  277 (431)
Q Consensus       198 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~  277 (431)
                      ++.+|.++.-+++.++...+....     ..-+.|...|.+. +..+|+.|..++++|...+     .+.-.|.+..+..
T Consensus       974 ~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~ 1042 (1251)
T KOG0414|consen  974 SPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMAL 1042 (1251)
T ss_pred             Cceeeecchheccchhhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHH
Confidence            999999999999999887664444     4567788889888 9999999999999998752     2233688999999


Q ss_pred             HHccCCHhHHHHHHHHHHHhcCCC
Q 014088          278 LLLNAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       278 ll~~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      ++.+++.+++..|-..+..+...+
T Consensus      1043 cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1043 CLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred             HhcCCcHHHHHHHHHHHHHhhhcc
Confidence            999999999999998888887655

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.074  Score=52.51  Aligned_cols=141  Identities=12%  Similarity=0.089  Sum_probs=86.6

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHH
Q 014088          227 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  306 (431)
Q Consensus       227 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  306 (431)
                      ..+..|.++|......+.+.....++..+...+++.+.     ..+..|+..+.+.  +...-+.+.|.-+...+.    
T Consensus       391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP----  459 (865)
T KOG1078|consen  391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGP----  459 (865)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCC----
Confidence            44566667776554567777777777777775555433     2355577766543  233344444544433221    


Q ss_pred             HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 014088          307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  386 (431)
Q Consensus       307 ~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~  386 (431)
                      +.......+..+.+...-.+..++..|..+|.++...++...                 ......+.+.+++.+.+++++
T Consensus       460 ~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~-----------------~sI~vllkRc~~D~DdevRdr  522 (865)
T KOG1078|consen  460 KAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL-----------------PSILVLLKRCLNDSDDEVRDR  522 (865)
T ss_pred             CCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----------------ccHHHHHHHHhcCchHHHHHH
Confidence            000112345566666666788899999999999873332221                 222445677799999999999


Q ss_pred             HHHHHHHhc
Q 014088          387 AVKILETYW  395 (431)
Q Consensus       387 a~~~l~~~~  395 (431)
                      |.-.+...-
T Consensus       523 Atf~l~~l~  531 (865)
T KOG1078|consen  523 ATFYLKNLE  531 (865)
T ss_pred             HHHHHHHhh
Confidence            988887665

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.33  E-value=0.065  Score=51.94  Aligned_cols=288  Identities=12%  Similarity=0.099  Sum_probs=147.0

Q ss_pred             CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHH
Q 014088           29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA  108 (431)
Q Consensus        29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~  108 (431)
                      .++..+.-|+..|.....+-++..+.     ++..++.+.++.+..||..|+..|..+|.++++....     ....|++
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~Q  103 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQ  103 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHH
Confidence            45788888999999888877877665     5788999999999999999999999999988765444     3557888


Q ss_pred             HhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc---CCChHHHHHHHHHHHH-hccCChHHHH--HHH
Q 014088          109 QFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSY-LSDGTNDKIQ--AVI  182 (431)
Q Consensus       109 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~~-l~~~~~~~~~--~~~  182 (431)
                      +| .+.++.-...+-.+|..+...++       .+.+..+...+.   +++..+|+.++..|.. +..-..+...  .-.
T Consensus       104 lL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~  175 (556)
T PF05918_consen  104 LL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEM  175 (556)
T ss_dssp             HT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHH
T ss_pred             HH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHH
Confidence            88 56566556666666666654421       345555555554   5678899999887753 2211111111  112


Q ss_pred             HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc----CChhhhHHHhhcCChHHHHHHh------cccchhhHHHHHHHHH
Q 014088          183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVT----GDDMQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTI  252 (431)
Q Consensus       183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~l~~L~~lL------~~~~~~~v~~~a~~~L  252 (431)
                      +.-++..+-.+|.+-...=-...+.+|..+-.    .+....+.+     ++.+.+..      ... +++.......++
T Consensus       176 e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~e~Idrli~C~  249 (556)
T PF05918_consen  176 EEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DPESIDRLISCL  249 (556)
T ss_dssp             HHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CHHHHHHHHHHH
Confidence            22334555566655333333334455555543    122223322     22333222      112 333333333333


Q ss_pred             HH----hhc--CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC-
Q 014088          253 SN----ITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-  325 (431)
Q Consensus       253 ~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-  325 (431)
                      ..    ++.  .+.....++.+. ++|.+-++    ....+...+.+++.++...+......++ .-+.+.|..++-.+ 
T Consensus       250 ~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L-~~i~~~L~~ymP~~~  323 (556)
T PF05918_consen  250 RQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLL-PSIFQLLKKYMPSKK  323 (556)
T ss_dssp             HHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHHTT----THHHHH-HHHHHHHHTTS----
T ss_pred             HHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHH-HHHHHHHHHhCCCCC
Confidence            32    222  344555555553 66655544    4467778888998888776432222222 11233333333221 


Q ss_pred             -CH----HHHHHHHHHHHHHHHhhhh
Q 014088          326 -DP----RIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       326 -~~----~v~~~al~~L~~l~~~~~~  346 (431)
                       .+    ...+..+.+++.+......
T Consensus       324 ~~~~l~fs~vEcLL~afh~La~k~p~  349 (556)
T PF05918_consen  324 TEPKLQFSYVECLLYAFHQLARKSPN  349 (556)
T ss_dssp             ------HHHHHHHHHHHHHHHTT-TH
T ss_pred             CCCcccchHhhHHHHHHHHHhhhCcc
Confidence             22    3456677788887765443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.26  E-value=0.065  Score=48.69  Aligned_cols=197  Identities=14%  Similarity=0.133  Sum_probs=126.5

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhccCCh--HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC--Chhhh
Q 014088          145 LPALERLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG--DDMQT  220 (431)
Q Consensus       145 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~  220 (431)
                      +...+..+.+...+.|..++..+.++.....  +... -....++..+.+.++.++.+-+..|+++++-++..  .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~-~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVE-DRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            4444555566778999999999998875432  2211 11224677788888877766666777888777654  22334


Q ss_pred             HHHhhcCChHHHHHHhcccc-hhhHHHHHHHHHHHhhc---CCHHHHHHHHHhCCHHHHHHH--Hcc----------CCH
Q 014088          221 QCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNL--LLN----------AEF  284 (431)
Q Consensus       221 ~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~l--l~~----------~~~  284 (431)
                      ..+++ .+.|.|.+.+.+.. ...+|..++.+|+-++.   ..++.....++  .+..+...  .+.          +++
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            44554 57788888887662 34566677777776654   33333332222  23322221  221          135


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          285 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       285 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                      .+...|+.+++-++..-+........ ...++.|..+|++.+.+++..|-++|.-+++....
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            68889999998888665543344322 34689999999999999999999999988876664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.078  Score=49.61  Aligned_cols=268  Identities=15%  Similarity=0.134  Sum_probs=140.2

Q ss_pred             CCChHHHHHhh----CCCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 014088           58 HGAVPIFVRLL----SSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  132 (431)
Q Consensus        58 ~g~i~~L~~lL----~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  132 (431)
                      .|.+..++..+    .+++..++..|++.|+|.+...| ..+..  ....+..++.-|.+..+.+++-.+..+|..+...
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~  330 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK  330 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence            45555555544    34778999999999999998743 33333  2335677777776777888888888888877765


Q ss_pred             CCCCC-hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH---HhcCCCCcccHHHHHHH
Q 014088          133 KPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV---ELLRHPSPSVLIPALRT  208 (431)
Q Consensus       133 ~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~---~ll~~~~~~v~~~a~~~  208 (431)
                      ..... ....-++.-.+..++.+.+++.+..+...++.++.-.....+......+...+.   -.+.++++.+. .||+.
T Consensus       331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~  409 (533)
T KOG2032|consen  331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRS  409 (533)
T ss_pred             hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHH
Confidence            32111 122234444666778889999999999999888743322212111112222333   33444555443 45555


Q ss_pred             HhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHH--HHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhH
Q 014088          209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  286 (431)
Q Consensus       209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~--L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  286 (431)
                      ....+.-+- ..+...  +.++   +.+ +. +.. +..+.+.  -..+....++....+...     ..-++++.-+.+
T Consensus       410 ~~~~c~p~l-~rke~~--~~~q---~~l-d~-~~~-~~q~Fyn~~c~~L~~i~~d~l~~~~t~-----~~~~f~sswe~v  475 (533)
T KOG2032|consen  410 ELRTCYPNL-VRKELY--HLFQ---ESL-DT-DMA-RFQAFYNQWCIQLNHIHPDILMLLLTE-----DQHIFSSSWEQV  475 (533)
T ss_pred             HHHhcCchh-HHHHHH--HHHh---hhh-HH-hHH-HHHHHHHHHHHHHhhhCHHHHHHHHHh-----chhheecchHHH
Confidence            544443221 111111  1111   111 11 111 2221111  111222223332222221     111222222345


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088          287 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  342 (431)
Q Consensus       287 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~  342 (431)
                      +..+...-.++..+-.+..+......-+...+..+...+-++++..+..++..+..
T Consensus       476 r~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  476 REAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            55555444555444444444443333345566677778888999999999887764

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.083  Score=54.06  Aligned_cols=253  Identities=15%  Similarity=0.160  Sum_probs=152.1

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  138 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  138 (431)
                      +++..|+..+++.+..++-.|+..++.++...|.  ...  ...+..++.++....+...-..+|-+|+.++... -...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--ELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence            5777888888889999999999999999976652  121  2256667776655556777778999999999874 1222


Q ss_pred             hhHhhhHHHHHHhhcC--------CChHHHHHHHHHHHHhccCChHH-HHHHHHhCcHHH-HHHhcCCCCcccHHHHHHH
Q 014088          139 EQTRPALPALERLIHS--------NDDEVLTDACWALSYLSDGTNDK-IQAVIEAGVCPR-LVELLRHPSPSVLIPALRT  208 (431)
Q Consensus       139 ~~~~~~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~-L~~ll~~~~~~v~~~a~~~  208 (431)
                      .....++|.+.+-+..        .-..||..||.++..+++..... ...+.+ .+.+. +...+-+.+..+|+.|..+
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsAA  494 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASAA  494 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHHH
Confidence            2345677877777653        23568888888888877654322 222222 12222 3344556777888888877


Q ss_pred             HhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHH-HccCCHhHH
Q 014088          209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL-LLNAEFEIK  287 (431)
Q Consensus       209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~  287 (431)
                      +.-..-...+..      .+++ |+...+.- .-..|.++...++.-....+..+..+++.     ++.. +.+=+..+|
T Consensus       495 lqE~VGR~~n~p------~Gi~-Lis~~dy~-sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~HWd~~ir  561 (1133)
T KOG1943|consen  495 LQENVGRQGNFP------HGIS-LISTIDYF-SVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCHWDVKIR  561 (1133)
T ss_pred             HHHHhccCCCCC------Cchh-hhhhcchh-hhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccccccHHHH
Confidence            765543211110      1111 22222222 33445555555554444444444444332     2221 223388999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 014088          288 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE  335 (431)
Q Consensus       288 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~  335 (431)
                      +.++++|.++....     ........++++++...+.+...+.-+..
T Consensus       562 elaa~aL~~Ls~~~-----pk~~a~~~L~~lld~~ls~~~~~r~g~~l  604 (1133)
T KOG1943|consen  562 ELAAYALHKLSLTE-----PKYLADYVLPPLLDSTLSKDASMRHGVFL  604 (1133)
T ss_pred             HHHHHHHHHHHHhh-----HHhhcccchhhhhhhhcCCChHHhhhhHH
Confidence            99999999986532     23345567888888777776655544333

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.24  E-value=0.05  Score=53.05  Aligned_cols=108  Identities=20%  Similarity=0.217  Sum_probs=79.8

Q ss_pred             hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh
Q 014088          140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  219 (431)
Q Consensus       140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  219 (431)
                      ...+++..+++...+++..||..+|..|..+...... +..-+-.++...+..-+.+..+.||..|+.+|+.+=......
T Consensus        82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            5578888888888899999999999999988864332 222333366777777788888999999999999986322111


Q ss_pred             hHHHhhcCChHHHHHHhcccchhhHHHHHHHHHH
Q 014088          220 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  253 (431)
Q Consensus       220 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  253 (431)
                           +..+...+..+++++++++||+.|+..+.
T Consensus       161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence                 12456778888888879999998765443

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=97.22  E-value=0.02  Score=53.06  Aligned_cols=147  Identities=14%  Similarity=0.204  Sum_probs=105.5

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHH-HHhccCChHHHHH
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKIQA  180 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L-~~l~~~~~~~~~~  180 (431)
                      ++..+++.|..+.+...+..|+++|..++...+..-.....-.+..+++.-.+.+.++...|.... .-++.+.+..   
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---  406 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---  406 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence            566788888666889999999999999999987666666667777888888877777766666554 4445555432   


Q ss_pred             HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088          181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  257 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  257 (431)
                           .+..+..++...+...-..+++.+..++..-....-..+-..+.|.+++-..+. +..||+.|+++|..+..
T Consensus       407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                 123444555556666777788888888765432222223347899999999999 99999999999887653

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.22  E-value=0.031  Score=50.72  Aligned_cols=172  Identities=15%  Similarity=0.143  Sum_probs=114.7

Q ss_pred             hhhHHHH-HHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh-hh
Q 014088          142 RPALPAL-ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQ  219 (431)
Q Consensus       142 ~~~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~  219 (431)
                      .+++..+ ...+++.++.+|..++.+++-.+--+.....     ..++.+...+..++..++..|++++..+....+ ..
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3566544 4788899999999999999988866543332     345667777777788999999999999875432 11


Q ss_pred             hHH-------HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC----CHhHHH
Q 014088          220 TQC-------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA----EFEIKK  288 (431)
Q Consensus       220 ~~~-------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~----~~~v~~  288 (431)
                      ...       .....+++.+.+.+.+. +++++..|+..++.|...+.-.-    ...++..|+-+.-++    +.++|+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ  174 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ  174 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence            111       11235677888888888 89999999999998775311100    122444455444433    567887


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 014088          289 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  325 (431)
Q Consensus       289 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~  325 (431)
                      .-..++-.++.... ++ +......+++.+..+.+.+
T Consensus       175 ~L~~Ffp~y~~s~~-~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  175 CLSVFFPVYASSSP-EN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHcCCH-HH-HHHHHHHHHHHHHHHHhCc
Confidence            77777877777553 33 3445566777777776643

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.18  E-value=0.003  Score=62.86  Aligned_cols=187  Identities=19%  Similarity=0.165  Sum_probs=127.3

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH-------------HHHHHHcCChHHHHHHhccccchhHHHHHHHHH
Q 014088           60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-------------RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  126 (431)
Q Consensus        60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  126 (431)
                      +-..++.+|+.  +++-..+..++.-+..+.+..             |+.++ ...+|.+++... ......+.+-..+|
T Consensus       816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~-t~~~~~K~~yl~~L  891 (1030)
T KOG1967|consen  816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFE-TAPGSQKHNYLEAL  891 (1030)
T ss_pred             HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhc-cCCccchhHHHHHH
Confidence            34455556654  333344555555555544322             22222 346788888884 66677788888899


Q ss_pred             HHhhcCCCCCChh-hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC---cccH
Q 014088          127 SNFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVL  202 (431)
Q Consensus       127 ~~l~~~~~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~v~  202 (431)
                      +++..+-|..... ....++|.|++.|.-+|..++..++.++.-+....+.-...-+ ..+++.+..+-.+++   ..+|
T Consensus       892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHH
Confidence            9998875553332 3477899999999999999999999999877655443322222 256777777766654   4688


Q ss_pred             HHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHH
Q 014088          203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  252 (431)
Q Consensus       203 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  252 (431)
                      ..|++++..+....+...-......++..|.+.|.++ .--+|++|..+=
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTR 1019 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHh
Confidence            9999999999985553333344557889999999999 888999988653

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.15  Score=47.84  Aligned_cols=153  Identities=12%  Similarity=0.114  Sum_probs=91.0

Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHhhcCChhhhH
Q 014088          143 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQ  221 (431)
Q Consensus       143 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~  221 (431)
                      .++-.+..-..+++..++..|+++|+|.++..+++...... ..+..++.-| +..+.+|...++.+|..+........-
T Consensus       258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l  336 (533)
T KOG2032|consen  258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL  336 (533)
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence            33444444445677899999999999999987766554433 3445555444 445688888888888877643211110


Q ss_pred             HHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc--C--CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--G--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       222 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                      .-+-.++.-.+..+..+. ++++|..|...++.|+.  +  -.+.....+..+. ..++-.++++++.+- .|+++....
T Consensus       337 ~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~-~~lllhl~d~~p~va-~ACr~~~~~  413 (533)
T KOG2032|consen  337 ESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRL-APLLLHLQDPNPYVA-RACRSELRT  413 (533)
T ss_pred             hhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcc-ccceeeeCCCChHHH-HHHHHHHHh
Confidence            111113445577778888 99999999999998885  2  1121111222223 334444566666553 455555555


Q ss_pred             cC
Q 014088          298 TS  299 (431)
Q Consensus       298 ~~  299 (431)
                      +.
T Consensus       414 c~  415 (533)
T KOG2032|consen  414 CY  415 (533)
T ss_pred             cC
Confidence            44

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.1  Score=51.29  Aligned_cols=133  Identities=21%  Similarity=0.255  Sum_probs=89.7

Q ss_pred             HHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 014088          188 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII  267 (431)
Q Consensus       188 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  267 (431)
                      +.+-+++.+.++-+|...+.+++.--.++.       +.+++..|+..--++.+++||+.|..+|+-++..+++      
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------  588 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------  588 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh------
Confidence            334455666677777665555433222221       2255677777743344999999999999999887777      


Q ss_pred             HhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088          268 EAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  344 (431)
Q Consensus       268 ~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~  344 (431)
                         ..+..+++|... ++.||.-++.+|+-.|.......        .+..|-.+.+.+..-+++-|+-++.-++...
T Consensus       589 ---~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  589 ---QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             ---hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence               345667777655 89999999999998887653211        2444455666677788998998888777543

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.08  E-value=0.043  Score=46.46  Aligned_cols=140  Identities=14%  Similarity=0.072  Sum_probs=100.4

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-----CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 014088          247 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL  321 (431)
Q Consensus       247 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l  321 (431)
                      .|+..+..++.+ ++.+..+++..+--.+..+|...     ...+|..++.+|+.+..+++.+..+.+...++++..++.
T Consensus        98 naL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri  176 (293)
T KOG3036|consen   98 NALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI  176 (293)
T ss_pred             HHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence            344444455555 88888889988877777777543     467899999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH-----HHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          322 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-----IENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       322 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      ++.++...+..|..++..++-.+....-         .+....+...+..     +.++.+.+++.+-+.+.++.-++.+
T Consensus       177 me~GSelSKtvA~fIlqKIlldD~GL~Y---------iCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  177 MESGSELSKTVATFILQKILLDDVGLYY---------ICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             HhcccHHHHHHHHHHHHHHhhccccHHH---------HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            9999998899999999999876655432         2333333322222     2344566666666665555555443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.08  E-value=0.047  Score=49.59  Aligned_cols=192  Identities=16%  Similarity=0.147  Sum_probs=116.8

Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh--HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC--ChHHHHH
Q 014088          105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVLTDACWALSYLSDG--TNDKIQA  180 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~  180 (431)
                      ..+..+ .+.....|..++..+.++...........  ...+++.+.+.++.+..+-+..|+.++.-++-.  .......
T Consensus        47 ~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   47 EAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            344444 44567889999999888887754333332  356788888899888777777788877776644  2223343


Q ss_pred             HHHhCcHHHHHHhcCCCC--cccHHHHHHHHhHhhcCChhhhHHHh-hcCChHHHHH--Hhccc---------chhhHHH
Q 014088          181 VIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLD--LLTQN---------YKKSIKK  246 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~--lL~~~---------~~~~v~~  246 (431)
                      +++ .+.+.|.+.+.+..  ..+|..++.+|+-++.........+. ....+..+..  ..+..         .++.+..
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~  204 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA  204 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence            444 57788888887654  34556677777776543221111111 0012331111  11111         1345777


Q ss_pred             HHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          247 EACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       247 ~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      .|+.+-+-|... ........++ ..++.|..+|.+.+.+||..|..+|.-+..
T Consensus       205 aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  205 AALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            777666655543 2322334333 368999999999999999999999987754

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.05  E-value=0.0027  Score=47.74  Aligned_cols=70  Identities=19%  Similarity=0.310  Sum_probs=57.7

Q ss_pred             ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 014088          314 CIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE  392 (431)
Q Consensus       314 ~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  392 (431)
                      ++..|+.++. +.++.+...|+.-|+.+++..+.            .+..+.+.|+.+.+..|++|+|++|+..|..+++
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~------------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ  111 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN------------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ  111 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG------------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChh------------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            4778888884 45788888899999999988754            3778899999999999999999999999999988


Q ss_pred             Hhc
Q 014088          393 TYW  395 (431)
Q Consensus       393 ~~~  395 (431)
                      .+.
T Consensus       112 klm  114 (119)
T PF11698_consen  112 KLM  114 (119)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.96  E-value=0.13  Score=46.60  Aligned_cols=172  Identities=16%  Similarity=0.102  Sum_probs=109.2

Q ss_pred             hhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-hHH
Q 014088           15 LFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKC   93 (431)
Q Consensus        15 ~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~   93 (431)
                      .+++..+++.+. ++++.+|+.|+.||+-.+--+.+...     ..++.+...++..+..++..|+.++.-+.... ...
T Consensus        26 ~ll~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQ-SSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            333433344555 56679999999999998875543332     24667777777789999999999999886321 111


Q ss_pred             HHH-------HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHh-hc---CCChHHHHH
Q 014088           94 RDL-------VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL-IH---SNDDEVLTD  162 (431)
Q Consensus        94 ~~~-------i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l-L~---~~~~~v~~~  162 (431)
                      .+.       ......+..+.+.+ .+.+++++..++..++.|........   ...++..|+-+ ++   .++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            111       11233455666667 56688999999999999987753333   22344433333 22   235677776


Q ss_pred             HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 014088          163 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP  197 (431)
Q Consensus       163 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  197 (431)
                      ....+-..+...+.... .+...+++.+..+....
T Consensus       176 L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCc
Confidence            66667677776665544 55557777777776553

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.94  E-value=0.76  Score=49.22  Aligned_cols=134  Identities=13%  Similarity=0.055  Sum_probs=86.2

Q ss_pred             cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      ..+.+.+|..|++||..+....+...   ....+-..+-.-+.+.+..||+.|+..++......++.-...     ...+
T Consensus       826 ~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy-----Y~~i  897 (1692)
T KOG1020|consen  826 GENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY-----YDQI  897 (1692)
T ss_pred             cCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH-----HHHH
Confidence            46668999999999999988655432   111233334444566788999999999998876555433332     2345


Q ss_pred             HHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014088          107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  171 (431)
Q Consensus       107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  171 (431)
                      ..-+ .++...+|..+...+..+|...|.-..  .......++.-.++....++.-++.++.++.
T Consensus       898 ~erI-lDtgvsVRKRvIKIlrdic~e~pdf~~--i~~~cakmlrRv~DEEg~I~kLv~etf~klW  959 (1692)
T KOG1020|consen  898 IERI-LDTGVSVRKRVIKILRDICEETPDFSK--IVDMCAKMLRRVNDEEGNIKKLVRETFLKLW  959 (1692)
T ss_pred             Hhhc-CCCchhHHHHHHHHHHHHHHhCCChhh--HHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence            5555 566789999999999999988644322  1122222333333334447777777777765

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.94  E-value=0.0019  Score=48.53  Aligned_cols=73  Identities=21%  Similarity=0.246  Sum_probs=61.9

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          227 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       227 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      .++..|+++|..+.++.+..-||.-|+.++...|..+..+-+.|+-..+++++.+++++||.+|+.++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4578899999655488889999999999999778888888889999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.03  Score=55.71  Aligned_cols=216  Identities=12%  Similarity=0.058  Sum_probs=142.1

Q ss_pred             cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      .++-+.+|-.+++.|..+... ......+...+++...+..|++.++-+-..|+..+..+|...++        ..++.+
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL  807 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDL  807 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHH
Confidence            355568999999999999873 35556666779999999999999999999999988888865443        356666


Q ss_pred             HHHhccc---cchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH-HHHH
Q 014088          107 LAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVI  182 (431)
Q Consensus       107 ~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~  182 (431)
                      ...-.+.   ..++.+-..-.++.++..............++..+++..++++...|..++..+++++.-..-.. ..+.
T Consensus       808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~  887 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH  887 (982)
T ss_pred             HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence            6643221   11344555567888887765444444556778888888888888889999999999985432111 1122


Q ss_pred             HhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHh---hcCChHHHHHHhcccchhhHHHHHHHHHH
Q 014088          183 EAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCII---NHQALPCLLDLLTQNYKKSIKKEACWTIS  253 (431)
Q Consensus       183 ~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~---~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  253 (431)
                        .++..++.+... ++.-+|+.|+..+..+-.+.....-.+.   ..+....+........++.++..|+.++-
T Consensus       888 --ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le  960 (982)
T KOG4653|consen  888 --EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE  960 (982)
T ss_pred             --HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence              344555555544 5678899999999988876653322222   11233344444443325556666655544

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.92  E-value=0.21  Score=49.02  Aligned_cols=129  Identities=19%  Similarity=0.142  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhh
Q 014088           73 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI  152 (431)
Q Consensus        73 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL  152 (431)
                      ..+...+...+..+-...++  .. +-.+.+..+++.. .+++..+|..++.+|..+.............++...+..-+
T Consensus        60 dRIl~fla~fv~sl~q~d~e--~D-lV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl  135 (892)
T KOG2025|consen   60 DRILSFLARFVESLPQLDKE--ED-LVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRL  135 (892)
T ss_pred             HHHHHHHHHHHHhhhccCch--hh-HHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHH
Confidence            44444455555554433322  12 2234555666666 67788999999999999998665566666677888888888


Q ss_pred             cCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHh
Q 014088          153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVG  210 (431)
Q Consensus       153 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~  210 (431)
                      .+..+.||..|+.+|..+-..+.+.     +..+...+..++++ ++++||+.++..+.
T Consensus       136 ~Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  136 KDREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             hccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence            8999999999999999997433211     11355667777755 77889998876553

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.88  E-value=0.08  Score=52.44  Aligned_cols=218  Identities=20%  Similarity=0.124  Sum_probs=143.5

Q ss_pred             hHhhhHHHHHHhhcCCChHHHHHHHHHHH-HhccCChHHHHHHHHhCcHHHHHHhcCCCC-cccHHHHHHHHhHhhcCCh
Q 014088          140 QTRPALPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGDD  217 (431)
Q Consensus       140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~l~~l~~~~~  217 (431)
                      ...++...|+.+.....+..+.....+|. .+.-.. ....     ..++.+.+.+.... ..-...++.++.|++..++
T Consensus       501 Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~-~~~~-----~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~  574 (748)
T KOG4151|consen  501 IKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG-ERSY-----EVVKPLDSALHNDEKGLENFEALEALTNLASISE  574 (748)
T ss_pred             ccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC-Cchh-----hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcch
Confidence            34678888888887777777777777776 221111 1111     33444444444332 2234558889999998888


Q ss_pred             hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHHHH
Q 014088          218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISN  296 (431)
Q Consensus       218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~  296 (431)
                      ..++.+.+...++.+-+.+... ++..+..++..+.||..+..-....+.+ ...++.+...+...+......++.++..
T Consensus       575 s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~  653 (748)
T KOG4151|consen  575 SDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAA  653 (748)
T ss_pred             hhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccc
Confidence            8888888888888888888788 8999999999999999875555555555 3345656556666666677776666665


Q ss_pred             hcCCCCHHHHH-HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh
Q 014088          297 ATSGGSNEQIK-FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL  375 (431)
Q Consensus       297 l~~~~~~~~~~-~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l  375 (431)
                      ++.... ..+. ...-....+.+..++.+.+.+++...+..+.+++.....            +.+.+.+..-+..+..+
T Consensus       654 I~sv~~-n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~e------------i~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  654 ITSVVE-NHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFE------------IAEKIFETEVMELLSGL  720 (748)
T ss_pred             hhhcch-hhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHH------------HHHHhccchHHHHHHHH
Confidence            554332 2233 333355788888999999999999999998885544332            34555555556666555


Q ss_pred             hc
Q 014088          376 QS  377 (431)
Q Consensus       376 ~~  377 (431)
                      +.
T Consensus       721 ~~  722 (748)
T KOG4151|consen  721 QK  722 (748)
T ss_pred             HH
Confidence            43

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.88  E-value=0.029  Score=47.51  Aligned_cols=123  Identities=14%  Similarity=0.143  Sum_probs=92.5

Q ss_pred             hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcC-CChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 014088           11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD   89 (431)
Q Consensus        11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~   89 (431)
                      .-+|.++=|++..-..+.+.+-+|..++.+++.+.. ++.+....+...++||..++.+..+++..+..|..++..|..+
T Consensus       119 A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlld  198 (293)
T KOG3036|consen  119 AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLD  198 (293)
T ss_pred             ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhc
Confidence            345666666666666666777899999999999987 4567888899999999999999999999999999999998876


Q ss_pred             ChHHHH------HHH-HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 014088           90 SPKCRD------LVL-SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  133 (431)
Q Consensus        90 ~~~~~~------~i~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  133 (431)
                      +.+...      .+. -...+..++..+.+.++..+...+.++..+|+.+.
T Consensus       199 D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  199 DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            643211      111 11234445555556778889999999999998773

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.83  E-value=0.27  Score=48.23  Aligned_cols=195  Identities=13%  Similarity=0.071  Sum_probs=123.9

Q ss_pred             hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcC-CCh----HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088           12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIAS-GTS----ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV   86 (431)
Q Consensus        12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~-~~~----~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l   86 (431)
                      ++-++..|++-+-|. -.+..+|..|+..+.+.-- ..+    +..+.+++.. ...|..+|+++.+.+|..|...++.+
T Consensus       170 ml~rL~~p~l~R~L~-a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~  247 (1005)
T KOG1949|consen  170 MLYRLYKPILWRGLK-ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKI  247 (1005)
T ss_pred             HHHHHHhHHHHHhhc-cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            455666777777776 4566999999999998742 112    3445556544 67889999999999999999888877


Q ss_pred             cCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHH
Q 014088           87 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWA  166 (431)
Q Consensus        87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  166 (431)
                      ...-.+....-.-...+..+..-+..+...++|......|-.+...+..  ......++|.+-..+.++...||..+...
T Consensus       248 ~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~D~se~VRvA~vd~  325 (1005)
T KOG1949|consen  248 TSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLHDNSEKVRVAFVDM  325 (1005)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhhccchhHHHHHHHH
Confidence            6432211000000012333333344555668888888888888776422  22345677888888888999999999888


Q ss_pred             HHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhh
Q 014088          167 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  213 (431)
Q Consensus       167 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~  213 (431)
                      |..+-....-.   +-+---++.++..|..++..+.+..+..+.+.+
T Consensus       326 ll~ik~vra~~---f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  326 LLKIKAVRAAK---FWKICPMDHILVRLETDSRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             HHHHHhhhhhh---hhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            87765433222   211122455666677776666666666665554

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.77  E-value=0.068  Score=46.15  Aligned_cols=144  Identities=15%  Similarity=0.070  Sum_probs=98.2

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-----CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc
Q 014088          248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL  322 (431)
Q Consensus       248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll  322 (431)
                      |+..+..++.+ ++.+..+++.++.-.|..+++..     ...+|-.++.+++.+...++++....+.+.++++.....+
T Consensus        70 aLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m  148 (262)
T PF04078_consen   70 ALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM  148 (262)
T ss_dssp             HHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred             HHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence            34444455555 88899999999877777777654     2568899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH-HHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088          323 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       323 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~~~~~v~~~a~~~l~~~~~~  397 (431)
                      +.++.-.+..|..++.+++..+...+-.++..     .++..=...+.. +..+...+++.+-+...++..++.++
T Consensus       149 e~GselSKtvAtfIlqKIL~dd~GL~yiC~t~-----eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  149 EFGSELSKTVATFILQKILLDDVGLNYICQTA-----ERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSH-----HHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred             HhccHHHHHHHHHHHHHHHcchhHHHHHhcCH-----HHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence            98888888899999999998877665433211     111111112222 34556778888877666666555543

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.77  E-value=0.052  Score=53.00  Aligned_cols=229  Identities=12%  Similarity=0.137  Sum_probs=148.7

Q ss_pred             hhHhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC
Q 014088          139 EQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  216 (431)
Q Consensus       139 ~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  216 (431)
                      .....++|.|+..+..++  ..+....+..-..+. ..+      ++.++++.+++++...+..+|...+.-+-.+... 
T Consensus       289 i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld-~~e------yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~-  360 (690)
T KOG1243|consen  289 IIASKVLPILLAALEFGDAASDFLTPLFKLGKDLD-EEE------YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH-  360 (690)
T ss_pred             HHHHHHHHHHHHHhhccccchhhhhHHHHhhhhcc-ccc------cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh-
Confidence            344567777777776554  233333222222222 221      4458899999999999999998887777766643 


Q ss_pred             hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHH
Q 014088          217 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  295 (431)
Q Consensus       217 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  295 (431)
                        ..+..++..++|.+...+.+. ++.+|...+.++..++.. +..    .++...+..+.++-.+.+..+|.+..-+++
T Consensus       361 --Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~~----~Ln~Ellr~~ar~q~d~~~~irtntticlg  433 (690)
T KOG1243|consen  361 --LTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSKR----NLNGELLRYLARLQPDEHGGIRTNTTICLG  433 (690)
T ss_pred             --cCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhchh----hhcHHHHHHHHhhCccccCcccccceeeec
Confidence              445677889999999999999 999999999999988752 222    122223444555445557788888888888


Q ss_pred             HhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh
Q 014088          296 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL  375 (431)
Q Consensus       296 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l  375 (431)
                      .+.....+..+    +.-......+.++++-...+..++.++....+..+..+          +.     ...++.+.-+
T Consensus       434 ki~~~l~~~~R----~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~----------va-----~kIlp~l~pl  494 (690)
T KOG1243|consen  434 KIAPHLAASVR----KRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSE----------VA-----NKILPSLVPL  494 (690)
T ss_pred             ccccccchhhh----ccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhh----------hh-----hhcccccccc
Confidence            88765432222    22233444555565555666677776665544433222          12     2235667778


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCCCCC
Q 014088          376 QSHDNTEIYEKAVKILETYWVEEDED  401 (431)
Q Consensus       376 ~~~~~~~v~~~a~~~l~~~~~~e~~~  401 (431)
                      .-++++.++..|-..++.|+..-++-
T Consensus       495 ~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  495 TVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             ccCcccchhhHHHHHHHHHHhhhhhh
Confidence            88999999999999998888755443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.71  E-value=0.016  Score=59.48  Aligned_cols=160  Identities=19%  Similarity=0.184  Sum_probs=123.0

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 014088           60 AVPIFVRLLSS----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  135 (431)
Q Consensus        60 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  135 (431)
                      ..|.+++..+.    .+|.++..|.-+|+.+..-+..+..     ..++.+...+..++++.+|.+++-+++-++-..|.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            56777777754    5799999999999999765544322     25788999998899999999999999998876543


Q ss_pred             CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088          136 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  215 (431)
Q Consensus       136 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~  215 (431)
                      .    ....-+.+...|++.++.+|+.|+.++.+|..++--+     -.|.+..+..++.++++.++.-|=..+--++..
T Consensus       995 l----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK-----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen  995 L----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK-----VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             c----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH-----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence            2    2456677888999999999999999999998775333     238999999999999999888887777777654


Q ss_pred             ChhhhHHHhhcCChHHHHHHhccc
Q 014088          216 DDMQTQCIINHQALPCLLDLLTQN  239 (431)
Q Consensus       216 ~~~~~~~~~~~~~l~~L~~lL~~~  239 (431)
                      ..    .++  +++|-++..|.+.
T Consensus      1066 ~n----~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1066 GN----TIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred             cc----chh--hhchHHHHhhccC
Confidence            32    122  4677777777655

>PRK14707 hypothetical protein; Provisional

Probab=96.68  E-value=1.2  Score=49.45  Aligned_cols=345  Identities=17%  Similarity=0.146  Sum_probs=185.9

Q ss_pred             CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CC-HHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      ++.+.+..+.+...-++. .+..+..+ +...|..++..+.. ++ +.-+..+...-..++.+ ...+..+ +...+-..
T Consensus       177 ~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~-~~q~va~~  252 (2710)
T PRK14707        177 DNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNEL-KPQELGNA  252 (2710)
T ss_pred             CCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhC-ChHHHHHH
Confidence            344555555554444554 34444444 44456666665554 44 44444444444444444 4444433 33446666


Q ss_pred             HHHhccccchhHHHHHHHHH-HHhhcCCCCCChhhH-hhhHHHHHHhhcCCChHHHHHHHHHHHH-hccCChHHHHHHHH
Q 014088          107 LAQFNEHAKLSMLRNATWTL-SNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIE  183 (431)
Q Consensus       107 ~~~l~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~  183 (431)
                      ++.|.+=++....++++..+ ..++.+. ....... ..+-..|..+-+-++..+-..+...|.. +.. ++...+ -++
T Consensus       253 lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~-~~~  329 (2710)
T PRK14707        253 LNALSKWADTPVCAAAASALAERLVDDP-GLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCK-ALN  329 (2710)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhh-ccc
Confidence            67665555554555544444 4455442 2222222 2233333333344566665555555543 443 443333 222


Q ss_pred             hCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHh-cccchhhHHHHHHHHHHHhhcCCHH
Q 014088          184 AGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVN  261 (431)
Q Consensus       184 ~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~  261 (431)
                      ...+...++-|+. ++..+...+...|..-....+...+. ++...+..+++-+ +-+ +..+...|+..|..=...+++
T Consensus       330 ~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~-l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~  407 (2710)
T PRK14707        330 ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKD-LEPQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLE  407 (2710)
T ss_pred             hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcc-cchhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChh
Confidence            2334444555544 66666666666665554444544443 3344455555555 444 777777777777765556677


Q ss_pred             HHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088          262 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  341 (431)
Q Consensus       262 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~  341 (431)
                      ....+-..|+-..|--+-+=++..++..+..+|.--..+. .+.++-+--.++...|-.+-+.+|..+...+.+.|..-+
T Consensus       408 l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d-~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l  486 (2710)
T PRK14707        408 LRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHD-TELCKALDPINVTQALDALSKWPDTPICGQTASALAARL  486 (2710)
T ss_pred             hhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhcc-HHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHh
Confidence            7777766665555544455578899999999888776654 355555444455555555557888777766666665544


Q ss_pred             HhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHH-HHHHHHhc
Q 014088          342 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA-VKILETYW  395 (431)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a-~~~l~~~~  395 (431)
                      .....            .+.-+.-.+....|..|...++......| .++-.+..
T Consensus       487 ~~~~~------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~  529 (2710)
T PRK14707        487 AHERR------------LRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV  529 (2710)
T ss_pred             cccHH------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Confidence            43322            23344444556668888888775555554 34434444

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.62  E-value=0.063  Score=56.79  Aligned_cols=168  Identities=16%  Similarity=0.121  Sum_probs=116.1

Q ss_pred             HHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCc
Q 014088          120 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP  199 (431)
Q Consensus       120 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  199 (431)
                      ..+.|+...++...+  -.....+.+..++..+..+...+|..|+.||..+...++.-   +....+-..+..-+.+...
T Consensus       795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa  869 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA  869 (1692)
T ss_pred             hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence            345555555555421  11233567788888889889999999999999999887632   3333444556667778888


Q ss_pred             ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH
Q 014088          200 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  279 (431)
Q Consensus       200 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  279 (431)
                      .||..|+..+|......+....     .....+.+-+.++ .-.||+.+...+..+|...|+.- .+.+  +...++.-.
T Consensus       870 sVREAaldLvGrfvl~~~e~~~-----qyY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~-~i~~--~cakmlrRv  940 (1692)
T KOG1020|consen  870 SVREAALDLVGRFVLSIPELIF-----QYYDQIIERILDT-GVSVRKRVIKILRDICEETPDFS-KIVD--MCAKMLRRV  940 (1692)
T ss_pred             HHHHHHHHHHhhhhhccHHHHH-----HHHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChh-hHHH--HHHHHHHHh
Confidence            9999999999998877665544     3456677777777 89999999999999998655532 2212  122233333


Q ss_pred             ccCCHhHHHHHHHHHHHhcCCC
Q 014088          280 LNAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       280 ~~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      +++...++.-+..++.++-...
T Consensus       941 ~DEEg~I~kLv~etf~klWF~p  962 (1692)
T KOG1020|consen  941 NDEEGNIKKLVRETFLKLWFTP  962 (1692)
T ss_pred             ccchhHHHHHHHHHHHHHhccC
Confidence            4445558888888888886543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.57  E-value=0.018  Score=57.59  Aligned_cols=153  Identities=22%  Similarity=0.163  Sum_probs=115.7

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH-cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 014088           58 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP  136 (431)
Q Consensus        58 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  136 (431)
                      ..++|.+++..+......+..-+.+|.++....|. ....-+ ...++.|++.| .-+|..++..+..++.-+....+..
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL  943 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETL  943 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhcccc
Confidence            46899999988876667777788888888776654 111111 22456666667 7789999999999999888877667


Q ss_pred             ChhhHhhhHHHHHHhhcCCC---hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHh
Q 014088          137 LFEQTRPALPALERLIHSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  212 (431)
Q Consensus       137 ~~~~~~~~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l  212 (431)
                      .......++|.++.+=.+.+   ..+|..|+.++..+.+--|...-...+..++..++..|++++.-+|..|.++=.++
T Consensus       944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence            77777899999999877665   68899999999999984443323344457889999999999989999998776554

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.55  E-value=0.91  Score=46.55  Aligned_cols=237  Identities=18%  Similarity=0.214  Sum_probs=145.7

Q ss_pred             hhHHHHHHhhcC-----CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC----CCC----cccHHHHHHHH
Q 014088          143 PALPALERLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----HPS----PSVLIPALRTV  209 (431)
Q Consensus       143 ~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~v~~~a~~~l  209 (431)
                      +++..++.++.+     ...+....++..|...+.-. ...+.+++.++++.|+..+.    .+.    ..+.+..+.++
T Consensus       117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii  195 (802)
T PF13764_consen  117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII  195 (802)
T ss_pred             CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence            667777777663     24566667777777777664 45566888999999888763    333    56777777777


Q ss_pred             hHhhcCChhhhHHH----h--------hcCChHHHHHHhcccc---hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHH
Q 014088          210 GNIVTGDDMQTQCI----I--------NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP  274 (431)
Q Consensus       210 ~~l~~~~~~~~~~~----~--------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~  274 (431)
                      ..+...........    .        ...-+..+++.+.++.   ++.+....+++|.+|+.++.+..+.+++.  +..
T Consensus       196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p  273 (802)
T PF13764_consen  196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKP  273 (802)
T ss_pred             HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHH
Confidence            77764322111000    1        1122666777665542   57889999999999999989988888874  233


Q ss_pred             HHHHHccC-----CHhHHHHHHHHHHHhcCCC-----CHHHHHHHHHCCChHHHHhhcCCC--------CHH--------
Q 014088          275 LVNLLLNA-----EFEIKKEAAWAISNATSGG-----SNEQIKFLVSQGCIKPLCDLLNCP--------DPR--------  328 (431)
Q Consensus       275 L~~ll~~~-----~~~v~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~l~~L~~ll~~~--------~~~--------  328 (431)
                      .+++=...     +..+.   +..++.++..-     ....+..+++.|++...++++...        +++        
T Consensus       274 ~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p  350 (802)
T PF13764_consen  274 YLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP  350 (802)
T ss_pred             hcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence            33322111     22233   44444444322     245667788999999888877532        222        


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh-hcCCCHHHHHHHHHHHHHhcCCC
Q 014088          329 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEIYEKAVKILETYWVEE  398 (431)
Q Consensus       329 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~e  398 (431)
                      ....++..|.-++......             +.+...+.++.+..| +-+....+-..|.++|+.+-+.+
T Consensus       351 sLp~iL~lL~GLa~gh~~t-------------Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  351 SLPYILRLLRGLARGHEPT-------------QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             cHHHHHHHHHHHHhcCHHH-------------HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence            2345666666666644332             222345667777777 44557778888888888776644

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.52  E-value=0.064  Score=54.58  Aligned_cols=199  Identities=13%  Similarity=0.102  Sum_probs=138.6

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088           60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE  139 (431)
Q Consensus        60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  139 (431)
                      +.+.+-.-+.++++.-|..++..+..+..... ........+.+-.++.....+.+..+...++.+|..++..-......
T Consensus       254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~  332 (815)
T KOG1820|consen  254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK  332 (815)
T ss_pred             cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence            34455556667889999999999888876544 11111122334455555557778889999999999999876545555


Q ss_pred             hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh-h
Q 014088          140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-M  218 (431)
Q Consensus       140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~  218 (431)
                      .....+|.++..+......++..+..++-.++...+.       ....+.+...+.+.++.++..+...+.......+ .
T Consensus       333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence            5678899999999988888888877777665543221       1456778889999999999998888877766544 1


Q ss_pred             hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-CCHHHHHHHH
Q 014088          219 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAII  267 (431)
Q Consensus       219 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~  267 (431)
                      ....-.-..+++.++....+. +.+||..|..+++-+.. ........++
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L  454 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKLL  454 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            111111226778888888888 99999999999998876 3344444333

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.46  Score=47.01  Aligned_cols=279  Identities=15%  Similarity=0.061  Sum_probs=159.0

Q ss_pred             hhhhhhhHHHHHhhhccC-------CChHHHHHHHHHHHHHcC--CChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHH
Q 014088           11 ILISLFVDQFFFHCFFSC-------CFGAVQFEAAWALTNIAS--GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW   81 (431)
Q Consensus        11 g~~~~~v~~~lv~~L~~s-------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~   81 (431)
                      |+++.++.     .|.++       +++.-.+.|++.+.++..  .....-.-+.+.=+++.++..++++.--++..++.
T Consensus       408 giLsf~~s-----il~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace  482 (970)
T COG5656         408 GILSFLLS-----ILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACE  482 (970)
T ss_pred             hHHHHHHH-----HHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHH
Confidence            67777776     44221       234556788888887765  23333444555667888888999999899999999


Q ss_pred             HHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh--hhHhhhHHHHHHhhcCCChHH
Q 014088           82 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRPALPALERLIHSNDDEV  159 (431)
Q Consensus        82 ~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~i~~L~~lL~~~~~~v  159 (431)
                      .++.+..+-+   +...-..+.+...+.+ .+.+-.++-.|+-++..+..+......  ....+.+..|+.+-+.-+.++
T Consensus       483 ~is~~eeDfk---d~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~  558 (970)
T COG5656         483 FISTIEEDFK---DNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDP  558 (970)
T ss_pred             HHHHHHHhcc---cchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchH
Confidence            9999954322   2333334566677777 457788888999999988887522211  122334444555555556666


Q ss_pred             HHHHHHHHHH-hccCChHHHHHHHHh---CcHHHHHHhcCCC---C---cccHHHHHHHHhHhh---cC--ChhhhHHHh
Q 014088          160 LTDACWALSY-LSDGTNDKIQAVIEA---GVCPRLVELLRHP---S---PSVLIPALRTVGNIV---TG--DDMQTQCII  224 (431)
Q Consensus       160 ~~~a~~~L~~-l~~~~~~~~~~~~~~---~~i~~L~~ll~~~---~---~~v~~~a~~~l~~l~---~~--~~~~~~~~~  224 (431)
                      ...++..+.. .+..-......+...   .++.....++.++   +   .+-...|.++|..+.   ..  +....-.-+
T Consensus       559 LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~l  638 (970)
T COG5656         559 LSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYL  638 (970)
T ss_pred             HHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            6666665542 232222222222220   2222333333332   1   122334444444432   11  111111223


Q ss_pred             hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCC-HhHHHHHHHHHHHhcCCC
Q 014088          225 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-FEIKKEAAWAISNATSGG  301 (431)
Q Consensus       225 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~  301 (431)
                      .....|.+--++++. ..+.-.+|+..+-+.+..+.+.-.  +--|+.+.+.+++.+.. ..-.+++.-++.|+...+
T Consensus       639 e~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG  713 (970)
T COG5656         639 EVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYG  713 (970)
T ss_pred             HHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhC
Confidence            345667777777777 778888888888877654333221  12245555666665554 356678888999988766

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.48  E-value=0.026  Score=45.60  Aligned_cols=144  Identities=17%  Similarity=0.195  Sum_probs=102.0

Q ss_pred             HHHHHhcC--CCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHH
Q 014088          188 PRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA  265 (431)
Q Consensus       188 ~~L~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  265 (431)
                      ..++..|.  ...+++|..+.-++..+.   +...+ -....+-+.+...+... +.+-...++.++..+-...++....
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence            34444443  456788998888888884   22222 22323445566666666 6777888999999998888888877


Q ss_pred             HH-HhCCHHHHHHHHc--cCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHH-HHHHHHHHHHH
Q 014088          266 II-EAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPR-IVTVCLEGLEN  339 (431)
Q Consensus       266 l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~-v~~~al~~L~~  339 (431)
                      +. ..|+++.+..++.  .++..++..++.+|..-+..   +.++......+++.|.+..+ +++.. ++..|+-+|++
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            77 5788999999998  66888999999999887764   44555566678999999996 45555 77777777664

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.42  E-value=0.049  Score=47.27  Aligned_cols=101  Identities=11%  Similarity=0.055  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHh
Q 014088           32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  110 (431)
Q Consensus        32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l  110 (431)
                      .....|+++|..++--++..+..+.+...++.++.+|.. ..+.++..++.+|..+..+++.+...+-+.+++..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            456778899999988889999999999999999999954 6799999999999999999998889999999999999999


Q ss_pred             cc-ccchhHHHHHHHHHHHhhcC
Q 014088          111 NE-HAKLSMLRNATWTLSNFCRG  132 (431)
Q Consensus       111 ~~-~~~~~~~~~a~~~L~~l~~~  132 (431)
                      +. +.+.+++-.+...|.-....
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHcc
Confidence            64 34677888888777766544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.41  E-value=0.3  Score=45.54  Aligned_cols=269  Identities=18%  Similarity=0.133  Sum_probs=139.4

Q ss_pred             hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCH-HHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088           24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTD-DVREQAVWALGNVAGDSPKCRDLVLSNG  101 (431)
Q Consensus        24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~-~v~~~a~~~L~~l~~~~~~~~~~i~~~~  101 (431)
                      -+..+....+|..++--|+.-+. +++.+..+..+|.++.+++.+.. ++. .....++.++.-++.+... ...+....
T Consensus        29 ~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~-~~l~~~~~  106 (361)
T PF07814_consen   29 GLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN-MHLLLDRD  106 (361)
T ss_pred             hcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc-hhhhhchh
Confidence            45555566899999988998887 79999999999999999999955 333 3333344445555554432 23333444


Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc---------CCChHHHHHHHHHHHHhc-
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLS-  171 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~-  171 (431)
                      .+..+++++.-....++.....      ... ..............+.+.+.         .....-+..++.++..++ 
T Consensus       107 ~~~ll~~Ll~~~~~~~~~~~~~------~~~-~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~  179 (361)
T PF07814_consen  107 SLRLLLKLLKVDKSLDVPSDSD------SSR-KKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVR  179 (361)
T ss_pred             HHHHHHHHhccccccccccchh------hhh-hhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHH
Confidence            5555566664010000000000      000 00000001112222222221         111223344444444442 


Q ss_pred             -------------cCChHHHHHHHHhCcHHHHHHhcC----CC------------CcccHHHHHHHHhHhhcCChhhhHH
Q 014088          172 -------------DGTNDKIQAVIEAGVCPRLVELLR----HP------------SPSVLIPALRTVGNIVTGDDMQTQC  222 (431)
Q Consensus       172 -------------~~~~~~~~~~~~~~~i~~L~~ll~----~~------------~~~v~~~a~~~l~~l~~~~~~~~~~  222 (431)
                                   ...+...+.+...|+++.++.++.    ..            +......++++|.+.+..+..+...
T Consensus       180 ~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~  259 (361)
T PF07814_consen  180 SLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSY  259 (361)
T ss_pred             HHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHH
Confidence                         111222344566678888888764    11            1124566888888888766655544


Q ss_pred             Hhh--cCChHHHHHH-hccc--chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc--------------CC
Q 014088          223 IIN--HQALPCLLDL-LTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--------------AE  283 (431)
Q Consensus       223 ~~~--~~~l~~L~~l-L~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--------------~~  283 (431)
                      ...  .+.++.+... +...  ....+...+++.+.|++-++++.+..+...++...+..+...              ..
T Consensus       260 l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~  339 (361)
T PF07814_consen  260 LLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESS  339 (361)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccccccccc
Confidence            442  2333333322 2222  034446678899999998887777666655443322221111              12


Q ss_pred             HhHHHHHHHHHHHhcCCC
Q 014088          284 FEIKKEAAWAISNATSGG  301 (431)
Q Consensus       284 ~~v~~~a~~aL~~l~~~~  301 (431)
                      .+...-++.++.|++.+.
T Consensus       340 ~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  340 FDILILALGLLINLVEHS  357 (361)
T ss_pred             chHHHHHHHhHHHheeeC
Confidence            355666777778877654

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.39  E-value=0.36  Score=45.11  Aligned_cols=174  Identities=10%  Similarity=0.081  Sum_probs=110.4

Q ss_pred             chhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 014088          115 KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  192 (431)
Q Consensus       115 ~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  192 (431)
                      ..+-+..|..-|..+.... ...-......++-.+++.|.+ .+..+++.|++.|..++.+.+.+..--.+ -.+..+++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence            3444555665444444433 222333446677788888887 67888999999999999887654321111 23455555


Q ss_pred             hcCCCCcccHHHHHHH-HhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhC
Q 014088          193 LLRHPSPSVLIPALRT-VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAG  270 (431)
Q Consensus       193 ll~~~~~~v~~~a~~~-l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~  270 (431)
                      .-.+..+.+...|... +..++...+..        .+..+..++.+. +...-..++..+..++.. +.+....++. .
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-d  448 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-D  448 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-h
Confidence            5555556565555544 44444444422        233455555555 666666777788888763 3444444444 5


Q ss_pred             CHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          271 IIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      +.|.+++...+.+..||+.|+.+|..+..
T Consensus       449 iaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            89999999999999999999999988754

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.29  E-value=0.06  Score=43.54  Aligned_cols=143  Identities=20%  Similarity=0.164  Sum_probs=96.3

Q ss_pred             HHHHhhc--CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh
Q 014088          147 ALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII  224 (431)
Q Consensus       147 ~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  224 (431)
                      .++..|.  ...+++|..+.-++..+-..   ..+ -....+-+.+-.++...+.+-...++.++..+-...+.....++
T Consensus         7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~-~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~   82 (157)
T PF11701_consen    7 TLLTSLDMLRQPEEVRSHALVILSKLLDA---ARE-EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF   82 (157)
T ss_dssp             HHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred             HHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHH-HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence            3444444  35778999999888887421   112 12222334455556666666788888899888887776655555


Q ss_pred             -hcCChHHHHHHhc--ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc-CCHh-HHHHHHHHHHH
Q 014088          225 -NHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFE-IKKEAAWAISN  296 (431)
Q Consensus       225 -~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~-v~~~a~~aL~~  296 (431)
                       ..|+++.+..++.  .. +..++..++.+|..-|.. ...+..+.+ .+++.|-++++. ++.. +|..|+-.|+.
T Consensus        83 ~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d-~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   83 LSEGFLESLLPLASRKSK-DRKVQKAALELLSAACID-KSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTS-HHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHcc-HHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence             6688888999998  55 788888888888877664 554555544 578999999954 4555 78888877764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.28  E-value=1.6  Score=44.75  Aligned_cols=210  Identities=15%  Similarity=0.191  Sum_probs=124.0

Q ss_pred             hCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc---cccc----hhHHHHHHH
Q 014088           57 DHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAK----LSMLRNATW  124 (431)
Q Consensus        57 ~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~---~~~~----~~~~~~a~~  124 (431)
                      +.|++..|+.++.+     .........+..|...+. .+.+|..+.+.++++.++..+.   ....    .++.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            46899999998876     234455555555555554 4678999999999999999985   2222    566666666


Q ss_pred             HHHHhhcCCCCCCh---------h----hHhhhHHHHHHhhcC----CChHHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 014088          125 TLSNFCRGKPQPLF---------E----QTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC  187 (431)
Q Consensus       125 ~L~~l~~~~~~~~~---------~----~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  187 (431)
                      ++..+.........         .    .....+..+++.+++    .++.+....++.|-+|+.+.++..+.+++. + 
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F-  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-F-  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-H-
Confidence            66555443211000         0    022345566666654    478999999999999999998887766542 2 


Q ss_pred             HHHHHh--cCCCCcccHHHHHHHHhHhhcCC------hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC
Q 014088          188 PRLVEL--LRHPSPSVLIPALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  259 (431)
Q Consensus       188 ~~L~~l--l~~~~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  259 (431)
                      ...+++  ++.....--...+.++..++.+-      ...++.+++.|++...++.|... -+..        .+.  .+
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~--------~~~--~s  340 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL--------KNT--DS  340 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc--------ccC--CC
Confidence            222222  11111111123355555555432      24566677888888888877655 3332        111  33


Q ss_pred             HHHHHHHHHhCCHHHHHHHHcc
Q 014088          260 VNQIQAIIEAGIIGPLVNLLLN  281 (431)
Q Consensus       260 ~~~~~~l~~~~~i~~L~~ll~~  281 (431)
                      ++. ...+....+|.++++|..
T Consensus       341 ~eW-k~~l~~psLp~iL~lL~G  361 (802)
T PF13764_consen  341 PEW-KEFLSRPSLPYILRLLRG  361 (802)
T ss_pred             HHH-HHHhcCCcHHHHHHHHHH
Confidence            443 334445567777777653

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=96.27  E-value=0.75  Score=40.77  Aligned_cols=204  Identities=12%  Similarity=0.075  Sum_probs=141.8

Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh---hH---hhhHHHHHHhhcCCChHHHHHHHHHHH
Q 014088           95 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE---QT---RPALPALERLIHSNDDEVLTDACWALS  168 (431)
Q Consensus        95 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~---~~~i~~L~~lL~~~~~~v~~~a~~~L~  168 (431)
                      ..+..+|.+..++..+ ..-+-+.+..++.+..++-+..-.....   ..   ...+..++.--.. .+++.-.+-..+.
T Consensus        73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            4567788899999999 7778888999999999998876322221   11   2334444443111 3555555555555


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCC----hHHHHHHhcccchhhH
Q 014088          169 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA----LPCLLDLLTQNYKKSI  244 (431)
Q Consensus       169 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~~v  244 (431)
                      ...++. ...+.+....-+.....++..+.-++...|..++..+..........++..+.    .+..-.++.+. +--+
T Consensus       151 Ecirhe-~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt  228 (342)
T KOG1566|consen  151 ECIRHE-FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT  228 (342)
T ss_pred             HHHhhH-HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence            544443 34455666677788888888888889999999999887765555555553333    34466677777 8899


Q ss_pred             HHHHHHHHHHhhcC--CHHH-HHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088          245 KKEACWTISNITAG--NVNQ-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  302 (431)
Q Consensus       245 ~~~a~~~L~nl~~~--~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  302 (431)
                      +..+...++.+...  +... .+++.+..-+..++.+|.+++..++.+|.....-+..+..
T Consensus       229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn  289 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN  289 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence            99999999998763  3333 3444445568999999999999999999999988877653

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.26  E-value=0.0085  Score=33.35  Aligned_cols=30  Identities=27%  Similarity=0.343  Sum_probs=26.2

Q ss_pred             hHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014088          144 ALPALERLIHSNDDEVLTDACWALSYLSDG  173 (431)
Q Consensus       144 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  173 (431)
                      ++|.+.+++++++++||..|+++|+.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.24  E-value=0.62  Score=43.62  Aligned_cols=122  Identities=16%  Similarity=0.221  Sum_probs=93.8

Q ss_pred             HHHHHHHhHhhc---CChhhhHHHhh-cCChHHHHHHhcccc--hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHH
Q 014088          203 IPALRTVGNIVT---GDDMQTQCIIN-HQALPCLLDLLTQNY--KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV  276 (431)
Q Consensus       203 ~~a~~~l~~l~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~  276 (431)
                      +..++.+..+..   ......+.+++ ..++..|..++++..  .+.+-..|+..+..+....|.....+.+.|+++.++
T Consensus        78 K~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L  157 (379)
T PF06025_consen   78 KSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL  157 (379)
T ss_pred             HHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence            334555555555   23344455666 677788888887762  467788888999999988899999999999999999


Q ss_pred             HHHc-cC---CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 014088          277 NLLL-NA---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD  326 (431)
Q Consensus       277 ~ll~-~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~  326 (431)
                      +.+. .+   +.++-...-.+|+.++.+.  ...+.+.+.+.++.+++++.+++
T Consensus       158 ~~i~~~~i~~s~e~l~~lP~~l~AicLN~--~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  158 DAITAKGILPSSEVLTSLPNVLSAICLNN--RGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HHHhccCCCCcHHHHHHHHHHHhHHhcCH--HHHHHHHhcChHHHHHHHhCCHH
Confidence            9998 43   6677777778888888865  78888889999999999987653

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.21  E-value=0.025  Score=54.74  Aligned_cols=132  Identities=8%  Similarity=0.071  Sum_probs=86.9

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhh
Q 014088          146 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  225 (431)
Q Consensus       146 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  225 (431)
                      ..++...+ ++.+.+.-|...+......-|+..+     ..+..++.+..+++..||..|++.|..+|..++....    
T Consensus        26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~----   95 (556)
T PF05918_consen   26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS----   95 (556)
T ss_dssp             HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH----
T ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh----
Confidence            33444444 5788888999999988888876655     5678889999999999999999999999998776665    


Q ss_pred             cCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc---cCCHhHHHHHHHHHHHh
Q 014088          226 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL---NAEFEIKKEAAWAISNA  297 (431)
Q Consensus       226 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~aL~~l  297 (431)
                       .+...|.++|.+. ++.....+-.+|..+...++.        +.+..++.-+.   .++..+|+.++..|..=
T Consensus        96 -kvaDvL~QlL~td-d~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k  160 (556)
T PF05918_consen   96 -KVADVLVQLLQTD-DPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREK  160 (556)
T ss_dssp             -HHHHHHHHHTT----HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcc-cHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence             4567899999988 777777777777777664333        22334444443   55777888888877543

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.15  E-value=0.96  Score=46.03  Aligned_cols=176  Identities=16%  Similarity=0.197  Sum_probs=113.6

Q ss_pred             HHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCC-HHHHHHHHccCC-Hh
Q 014088          208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI-IGPLVNLLLNAE-FE  285 (431)
Q Consensus       208 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~-~~  285 (431)
                      +++++...++.....+++.+++..+.+.++.-....++..+...++|++...+..-.......+ ...+..++..-+ .+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            7888888888888999999999999999986667899999999999999742211111111111 112223333333 36


Q ss_pred             HHHHHHHHHHHhcCCCCH--------HHHHHHH--------------HCCChHH-HHhhcC-CCCHHHHHHHHHHHHHHH
Q 014088          286 IKKEAAWAISNATSGGSN--------EQIKFLV--------------SQGCIKP-LCDLLN-CPDPRIVTVCLEGLENIL  341 (431)
Q Consensus       286 v~~~a~~aL~~l~~~~~~--------~~~~~l~--------------~~~~l~~-L~~ll~-~~~~~v~~~al~~L~~l~  341 (431)
                      .-..|+..|+.+...+..        .....+.              ......+ +..++. +..+..+.+|++++.+++
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~  653 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL  653 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence            777788888888775321        0001111              1111333 444454 456677888999999998


Q ss_pred             HhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhc
Q 014088          342 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~~  395 (431)
                      .....            +...+.+.+++..+..+- .....++++.+..++..+.
T Consensus       654 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  654 EQNKE------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             HcChh------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            76654            466677788888888873 3336777777777776543

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=96.12  E-value=0.9  Score=40.19  Aligned_cols=224  Identities=15%  Similarity=0.107  Sum_probs=136.5

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCCCCCChhh
Q 014088           62 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQ  140 (431)
Q Consensus        62 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~  140 (431)
                      +.|-..|.++++.+|..++.+|+.+...-+..   .....-+..++..+.. -.|......++..+..|.+.. ......
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~   77 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES   77 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence            34566788899999999999999887544421   1112224444444421 135555666677777777443 222222


Q ss_pred             HhhhHHHHHHhhc--CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCCh
Q 014088          141 TRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDD  217 (431)
Q Consensus       141 ~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~  217 (431)
                      ...++..+.+-..  +-....|..+...+..+..+....... +..+++..+++.+.. .||.-...+...+..+...-+
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            3344444444332  224677888999998888765444332 223677888888866 578888888888877765443


Q ss_pred             hhhHHHhhcCChHHHHHHhc--------ccch---hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhH
Q 014088          218 MQTQCIINHQALPCLLDLLT--------QNYK---KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  286 (431)
Q Consensus       218 ~~~~~~~~~~~l~~L~~lL~--------~~~~---~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  286 (431)
                            + ....+.+.+.+.        .+.+   .-.+..-...|.++...++...     .-.+|.|++-|.++...+
T Consensus       157 ------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~  224 (262)
T PF14500_consen  157 ------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSV  224 (262)
T ss_pred             ------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHH
Confidence                  1 234444555442        1111   1234445555666555544432     236889999999999999


Q ss_pred             HHHHHHHHHHhcCCCC
Q 014088          287 KKEAAWAISNATSGGS  302 (431)
Q Consensus       287 ~~~a~~aL~~l~~~~~  302 (431)
                      |..++.+|...+..-+
T Consensus       225 K~D~L~tL~~c~~~y~  240 (262)
T PF14500_consen  225 KLDSLQTLKACIENYG  240 (262)
T ss_pred             HHHHHHHHHHHHHHCC
Confidence            9999999988876443

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.09  E-value=0.22  Score=43.31  Aligned_cols=106  Identities=21%  Similarity=0.296  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHH
Q 014088          285 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAI  363 (431)
Q Consensus       285 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l  363 (431)
                      .....|+..|.-++.-+. .-...+.+...++.+++++. ...+.++..++.+|..++......            ...|
T Consensus       106 ~li~~aL~vLQGl~LLHp-~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N------------~r~F  172 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHP-PSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN------------QRDF  172 (257)
T ss_pred             HHHHHHHHHHHHHHHcCc-hHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH------------HHHH
Confidence            345567778877766553 45566678889999999995 467889999999998888766542            5678


Q ss_pred             HhhccHHHHHHhhc--CCCHHHHHHHHHHHHHhcCCCCCCCC
Q 014088          364 DDAEGLEKIENLQS--HDNTEIYEKAVKILETYWVEEDEDEP  403 (431)
Q Consensus       364 ~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~~~~~~e~~~~~  403 (431)
                      ++.+|+..+..+..  +.+.+++-+....|.-|+.+|....+
T Consensus       173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~  214 (257)
T PF08045_consen  173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIP  214 (257)
T ss_pred             HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCC
Confidence            99999999999964  55899999999999999999877655

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.07  E-value=0.21  Score=50.97  Aligned_cols=188  Identities=13%  Similarity=0.132  Sum_probs=131.9

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHh-hcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 014088          112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  190 (431)
Q Consensus       112 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  190 (431)
                      .++++.-+..|+.-+................+.+-.+.+. +.+.+..+...++.+|..++..-......+. .++++.+
T Consensus       263 ~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v~p~l  341 (815)
T KOG1820|consen  263 LSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KNVFPSL  341 (815)
T ss_pred             hccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-HhhcchH
Confidence            5678888999999888888775411222224444444444 4467888999999999999876554433333 3778889


Q ss_pred             HHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-HHHHHHHHh
Q 014088          191 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEA  269 (431)
Q Consensus       191 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~  269 (431)
                      +..+....+.++..+..++-.++....       .....+.+...+.+. ++.++.+....+........ .....-.-.
T Consensus       342 ld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~~t~~  413 (815)
T KOG1820|consen  342 LDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVEKETVK  413 (815)
T ss_pred             HHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence            999988888888888777776665322       124578899999999 99999998877777665322 222222224


Q ss_pred             CCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHH
Q 014088          270 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF  308 (431)
Q Consensus       270 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  308 (431)
                      ++++.++....+.+.+||..|..+++.+....+.+....
T Consensus       414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k  452 (815)
T KOG1820|consen  414 TLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKK  452 (815)
T ss_pred             HHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            578888888888899999999999998877655444433

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.04  E-value=1.8  Score=43.46  Aligned_cols=271  Identities=11%  Similarity=0.054  Sum_probs=142.5

Q ss_pred             HhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088           22 FHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVL   98 (431)
Q Consensus        22 v~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~   98 (431)
                      ..+|...+|-.++..+++.+.-...+-.-..+.+..  ......+.++++. +..+.+...+.+|+.+.....+.-.   
T Consensus       532 lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~---  608 (978)
T KOG1993|consen  532 LNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA---  608 (978)
T ss_pred             HHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh---
Confidence            445555556667777777777665432222222221  2334445555554 5566677777777777643322111   


Q ss_pred             HcCChHHHHHHh----cc-ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCCh---HHHHHHHHHHHHh
Q 014088           99 SNGALMPLLAQF----NE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD---EVLTDACWALSYL  170 (431)
Q Consensus        99 ~~~~i~~l~~~l----~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~v~~~a~~~L~~l  170 (431)
                        .....+++.+    .. .+.+-.+...+.+|.++...-.........-++|.+-...+-+++   -..+.+.......
T Consensus       609 --P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~  686 (978)
T KOG1993|consen  609 --PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTT  686 (978)
T ss_pred             --HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHH
Confidence              0111222222    22 234455666777888887764333333334445554444443332   2344444444333


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH
Q 014088          171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW  250 (431)
Q Consensus       171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~  250 (431)
                      ..+.+.....+.  +++|.+...+..... ....++.++....--.....-.-...++.+.+..++.+- ..+-....+.
T Consensus       687 L~n~~~l~p~ll--~L~p~l~~~iE~ste-~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLk  762 (978)
T KOG1993|consen  687 LMNSQKLTPELL--LLFPHLLYIIEQSTE-NLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLK  762 (978)
T ss_pred             HhcccccCHHHH--HHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence            333332222222  466777777654432 344455555544332211111122336677777777666 5555666677


Q ss_pred             HHHHhhcCCHHHHHHHHHhCCHHHHHHHHc--cCCHhHHHHHHHHHHHhcCCCC
Q 014088          251 TISNITAGNVNQIQAIIEAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGS  302 (431)
Q Consensus       251 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~  302 (431)
                      ++..+...++ ........++++.+..-+-  .+.+.+...-+.+++.+...+.
T Consensus       763 iveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~  815 (978)
T KOG1993|consen  763 IVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNP  815 (978)
T ss_pred             HHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcCh
Confidence            7777776644 4555556777887777553  3467788888888888877653

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.02  E-value=0.053  Score=37.04  Aligned_cols=66  Identities=24%  Similarity=0.341  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc-CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 014088          245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQG  313 (431)
Q Consensus       245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  313 (431)
                      .+.|+|++++++.. +.....+.+.++++.++++.+. +...+|.-|..+|+-++..  .+....+.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T--~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST--EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC--HHHHHHHHHcC
Confidence            57899999999885 6667777778999999999976 4789999999999998874  36666655544

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.02  E-value=0.0077  Score=33.53  Aligned_cols=29  Identities=38%  Similarity=0.705  Sum_probs=25.7

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088           60 AVPIFVRLLSSPTDDVREQAVWALGNVAG   88 (431)
Q Consensus        60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   88 (431)
                      ++|.++++++++++.+|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            37899999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.00  E-value=0.81  Score=44.11  Aligned_cols=109  Identities=20%  Similarity=0.192  Sum_probs=80.1

Q ss_pred             hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088          138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  217 (431)
Q Consensus       138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  217 (431)
                      .....+.+..++..+.+++..+|..++..|..++..-.+ +......+++..+..-+-+..+.||..|+.+|..+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            445578888888888999999999999999988866543 2334455888888888888889999999999998854322


Q ss_pred             hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHH
Q 014088          218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  252 (431)
Q Consensus       218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  252 (431)
                      .-..     .....+..++++.++.+||+.|+..+
T Consensus       165 neen-----~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            1111     23346777777776889998876443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.83  E-value=0.34  Score=47.56  Aligned_cols=193  Identities=12%  Similarity=0.142  Sum_probs=134.7

Q ss_pred             hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh
Q 014088          140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  219 (431)
Q Consensus       140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  219 (431)
                      ....++|.+++++...|..+|...+.-+-.....-+   ..+++..+++.+..-+.+.++.+|...+.++..++..-.  
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--  401 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--  401 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence            446799999999999999999888877776665543   236667899999999999999999999999998875322  


Q ss_pred             hHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088          220 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  298 (431)
Q Consensus       220 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  298 (431)
                       ...++...+..+..+-.+. +..+|-...-+++.++.. .+..+    +.-......+-+.++-..-|..+.+++....
T Consensus       402 -~~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~R----~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  402 -KRNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASVR----KRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             -hhhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhhh----ccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence             2244445556665555544 778888888888877764 22222    2223445555667776677777777777665


Q ss_pred             CCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088          299 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE  347 (431)
Q Consensus       299 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~  347 (431)
                      ..-.  +..  +...+++.+.-+.-.++..++..+..++.......++.
T Consensus       476 ~~~~--~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  476 EYFD--QSE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             cccc--hhh--hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            4321  111  23457888888888888888888888888777665554

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.085  Score=50.24  Aligned_cols=152  Identities=20%  Similarity=0.272  Sum_probs=104.0

Q ss_pred             hhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088           23 HCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG  101 (431)
Q Consensus        23 ~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  101 (431)
                      .-|..+.++-+|...+..++.--.+..       +.|++..++.. .++.++++|+.|.-+|+-+|.+.+.         
T Consensus       522 ~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------  585 (926)
T COG5116         522 NELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------  585 (926)
T ss_pred             HHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence            345556677788877776664322211       24678888887 6678999999999999999976654         


Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  181 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  181 (431)
                      .+...+++|..+.+..+|.-.+.+|+-.|.+...      ...+..|-.+..+.+.-+|..|+-+++-+.....+....-
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~  659 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN  659 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence            4566778887788999999999999988877421      2345566677778888999999988887764432221111


Q ss_pred             HHhCcHHHHHHhcCCC
Q 014088          182 IEAGVCPRLVELLRHP  197 (431)
Q Consensus       182 ~~~~~i~~L~~ll~~~  197 (431)
                      + .++...+.+++.+.
T Consensus       660 v-~~I~k~f~~vI~~K  674 (926)
T COG5116         660 V-KRIIKKFNRVIVDK  674 (926)
T ss_pred             H-HHHHHHHHHHHhhh
Confidence            1 14556666666543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.72  E-value=0.31  Score=49.45  Aligned_cols=196  Identities=19%  Similarity=0.216  Sum_probs=124.0

Q ss_pred             HHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHH--HHHHhhcCCCh-H
Q 014088           82 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP--ALERLIHSNDD-E  158 (431)
Q Consensus        82 ~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~--~L~~lL~~~~~-~  158 (431)
                      ++++++...+.....+.+.++...+.+.+..-.+.+++..+...+.+++...+..........+.  .+..++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            77888888888889999999999999999877788999999999999998764443333322222  33344444444 7


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc
Q 014088          159 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ  238 (431)
Q Consensus       159 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  238 (431)
                      .-..++..|+.+..+.++.......               +.+......++..+...   ...........+.+.+++..
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~---~~~~~~~~~f~~~~~~il~~  635 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTS---EIRVINDRSFFPRILRILRL  635 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCcc---ceeehhhhhcchhHHHHhcc
Confidence            7777777777776554321110111               11122222222222211   11111221222226666666


Q ss_pred             cchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHH
Q 014088          239 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAIS  295 (431)
Q Consensus       239 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~  295 (431)
                      +..+..+.+|+|++.+++..+++..+.+.+.++++.+.++-... ...++..+...+-
T Consensus       636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  693 (699)
T KOG3665|consen  636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE  693 (699)
T ss_pred             cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence            65788999999999999998888888888898888877654333 4455555555443

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.69  E-value=1.7  Score=40.03  Aligned_cols=159  Identities=18%  Similarity=0.169  Sum_probs=117.3

Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHhhc-CCHHHHHHHHHh-CC-HHHHHHHHccC-----C--------HhHHHHHHH
Q 014088          229 LPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEA-GI-IGPLVNLLLNA-----E--------FEIKKEAAW  292 (431)
Q Consensus       229 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~-i~~L~~ll~~~-----~--------~~v~~~a~~  292 (431)
                      ++.+.+.|... ...+...++..|..++. .+......+... ++ .+.+-+++...     .        +.+|...+.
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            77888888888 77888899999999988 666666666652 22 44555555321     1        289999999


Q ss_pred             HHHHhcCCCCHHHHHHHHH-CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH
Q 014088          293 AISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  371 (431)
Q Consensus       293 aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  371 (431)
                      .+..+.....+...+.+++ .+.+..+..-+..+++++....+.+|..-+-.+..-..        ..+..+-....+.+
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r--------~~K~~~fn~~~L~~  208 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSR--------STKCKLFNEWTLSQ  208 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCCh--------hhhhhhcCHHHHHH
Confidence            9999999888777777664 56788889988888889999999999864433332211        12444445667888


Q ss_pred             HHHhhcCCCH----HHHHHHHHHHHHhcC
Q 014088          372 IENLQSHDNT----EIYEKAVKILETYWV  396 (431)
Q Consensus       372 l~~l~~~~~~----~v~~~a~~~l~~~~~  396 (431)
                      |..+-..+++    .+++.|...|..++-
T Consensus       209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT  237 (330)
T PF11707_consen  209 LASLYSRDGEDEKSSVADLVHEFLLALCT  237 (330)
T ss_pred             HHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence            9998887777    999999999988775

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.67  E-value=0.42  Score=39.46  Aligned_cols=142  Identities=18%  Similarity=0.162  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHcCC-ChH----hHHHHH------hCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088           33 VQFEAAWALTNIASG-TSE----NTRVVI------DHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN  100 (431)
Q Consensus        33 ~~~~a~~~L~~l~~~-~~~----~~~~~~------~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~  100 (431)
                      +|..|+.+|..++.. ++.    .-..+.      ..+.-+.|+. ++.++++.+|..|+.++..+-.+...+-...-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            677888888888764 211    011111      1223444544 5678999999999999999876554332221111


Q ss_pred             C-------------------ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hHhhhHHHHHHhhcCCChHH
Q 014088          101 G-------------------ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIHSNDDEV  159 (431)
Q Consensus       101 ~-------------------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~i~~L~~lL~~~~~~v  159 (431)
                      .                   .-..|+..|....+..+....+.++..+....|..+..  ....++..+..++.+.|+++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1                   23345555656668889999999999999988666544  34667777778888999999


Q ss_pred             HHHHHHHHHHhccCC
Q 014088          160 LTDACWALSYLSDGT  174 (431)
Q Consensus       160 ~~~a~~~L~~l~~~~  174 (431)
                      +..++.+++-+....
T Consensus       162 ~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  162 RVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999998876543

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=95.67  E-value=1.6  Score=43.25  Aligned_cols=235  Identities=14%  Similarity=0.106  Sum_probs=135.6

Q ss_pred             CHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHh
Q 014088           72 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL  151 (431)
Q Consensus        72 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l  151 (431)
                      ++.-+..-+..|.++..+-+   ..+....+++.++..+.   +..+.-...-++..++...  .........+|.|...
T Consensus       286 dn~qKs~Flk~Ls~~ip~fp---~rv~~~kiLP~L~~el~---n~~~vp~~LP~v~~i~~~~--s~~~~~~~~~p~l~pi  357 (700)
T KOG2137|consen  286 DNSQKSSFLKGLSKLIPTFP---ARVLFQKILPTLVAELV---NTKMVPIVLPLVLLIAEGL--SQNEFGPKMLPALKPI  357 (700)
T ss_pred             CcHHHHHHHHHHHHhhccCC---HHHHHHhhhhHHHHHhc---cccccccccchhhhhhhcc--chhhhhhhhhHHHHHH
Confidence            33334444445555543333   23444456777777763   2233333333444444432  2222334577777777


Q ss_pred             hcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChH
Q 014088          152 IHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP  230 (431)
Q Consensus       152 L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~  230 (431)
                      ++.. +.++....+.-+--|.+.-+  .+ -+...+++.|...+.+.+..++..++..+...+..-+   -..+...++|
T Consensus       358 ~~~~~~~~~~l~i~e~mdlL~~Kt~--~e-~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP  431 (700)
T KOG2137|consen  358 YSASDPKQALLFILENMDLLKEKTP--PE-EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILP  431 (700)
T ss_pred             hccCCcccchhhHHhhHHHHHhhCC--hH-HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHH
Confidence            7743 22332222222222222111  11 2233677888888888999999999999999887554   2345667888


Q ss_pred             HHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 014088          231 CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV  310 (431)
Q Consensus       231 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~  310 (431)
                      .+.++.....+..++..++-+++.++..    .....-...+..+.+..+..++.+......+..++.......  ..+.
T Consensus       432 ~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g--~ev~  505 (700)
T KOG2137|consen  432 RLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG--VEVM  505 (700)
T ss_pred             HhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc--eeee
Confidence            8888876555889999999999988732    111111123445555566678888888888888777654211  3344


Q ss_pred             HCCChHHHHhhcCCCC
Q 014088          311 SQGCIKPLCDLLNCPD  326 (431)
Q Consensus       311 ~~~~l~~L~~ll~~~~  326 (431)
                      ...+++.+..+...+.
T Consensus       506 ~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  506 AENVLPLLIPLSVAPS  521 (700)
T ss_pred             hhhhhhhhhhhhhccc
Confidence            5567777777665543

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.67  E-value=0.053  Score=52.76  Aligned_cols=134  Identities=13%  Similarity=0.127  Sum_probs=98.0

Q ss_pred             CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHH
Q 014088          197 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV  276 (431)
Q Consensus       197 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~  276 (431)
                      .++.++..|.-++..++.-+.+...     .-+|.++..|...++|.+|..|+-.++.++..........     -..|.
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLy  977 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLY  977 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHH
Confidence            5778888888888887654332222     4678899999744399999999999998876422222222     34578


Q ss_pred             HHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          277 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       277 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                      +-|.+.+..||+.|+.++.++...+.      +.-.|.+..+..++..+|..+...|--.+..+...+..
T Consensus       978 rrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098         978 RRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred             HHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence            88899999999999999999987552      22357788888889888888888877777777665543

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=95.63  E-value=0.98  Score=50.53  Aligned_cols=263  Identities=9%  Similarity=0.098  Sum_probs=147.9

Q ss_pred             CCHHHHHHHHHHHHHhcCC---ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHH
Q 014088           71 PTDDVREQAVWALGNVAGD---SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA  147 (431)
Q Consensus        71 ~~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~  147 (431)
                      ++..++..|+..|..++..   ..+....-.+..++.++..++.++.+.++++.++.++.++......    ....+.+.
T Consensus      1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWkt 1224 (1780)
T PLN03076       1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWKS 1224 (1780)
T ss_pred             cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcHH
Confidence            4567777788877777631   1121112233456788888887788899999999999998775421    22334454


Q ss_pred             HHHhhc----CCChHHHHHHHHHHHHhccCChHHH-----HHHHHhCcHHHHHHhcCCC-CcccHHHHHHHHhHhhcCCh
Q 014088          148 LERLIH----SNDDEVLTDACWALSYLSDGTNDKI-----QAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDD  217 (431)
Q Consensus       148 L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~  217 (431)
                      +..++.    +.++.+...+..++..+..+.-...     ..+  ..++..+..+.... +.++...|+..|++++..-.
T Consensus      1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076       1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence            544444    5677888888888877664321100     011  13344444444333 46677778887776621100


Q ss_pred             ---------------------------hhhHH--------HhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-C---
Q 014088          218 ---------------------------MQTQC--------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-G---  258 (431)
Q Consensus       218 ---------------------------~~~~~--------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~---  258 (431)
                                                 .....        -+-..++..|..+..+. +.+||..|+.+|-.+.. +   
T Consensus      1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076       1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred             hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhcc
Confidence                                       00000        00111233344445666 89999999999987765 1   


Q ss_pred             -CHHHHHHHHHhCCHHHHHHHHccC-------------------C-------HhHHHHHHHHHHHhcCCCCHHHHHHHH-
Q 014088          259 -NVNQIQAIIEAGIIGPLVNLLLNA-------------------E-------FEIKKEAAWAISNATSGGSNEQIKFLV-  310 (431)
Q Consensus       259 -~~~~~~~l~~~~~i~~L~~ll~~~-------------------~-------~~v~~~a~~aL~~l~~~~~~~~~~~l~-  310 (431)
                       +++....+.. +++-++++.+...                   +       .+....|+..+.++..    .....+. 
T Consensus      1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft----~fFd~L~~ 1456 (1780)
T PLN03076       1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV----KFYPTVNP 1456 (1780)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence             3344444444 3455555554321                   0       1222333444444432    1122211 


Q ss_pred             -HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088          311 -SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       311 -~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  345 (431)
                       -.+++..|..++..++..+...+..+|.+++....
T Consensus      1457 ~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076       1457 LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence             13466677777778888999999999999987554

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.62  E-value=1.5  Score=38.81  Aligned_cols=215  Identities=13%  Similarity=0.105  Sum_probs=125.9

Q ss_pred             hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088           24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNG  101 (431)
Q Consensus        24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  101 (431)
                      .|. ++++.+|..|+.+|..+...-+..   .....-+..|+.+..+  .+......++.++..+.....-.....  ..
T Consensus         7 ~Lt-sed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~--~~   80 (262)
T PF14500_consen    7 YLT-SEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA--VK   80 (262)
T ss_pred             hhC-CCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH--HH
Confidence            454 567899999999999887644322   1222335666665544  455555555666666663322111111  11


Q ss_pred             ChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHH
Q 014088          102 ALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQ  179 (431)
Q Consensus       102 ~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~  179 (431)
                      .+..+.+... +......|..+..++..+..+...........++..+++.+. ..||.-...+...+..+...-+-   
T Consensus        81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~---  157 (262)
T PF14500_consen   81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI---  157 (262)
T ss_pred             HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---
Confidence            2223332221 122456777888888888776422222233567778888877 45888888887777776654431   


Q ss_pred             HHHHhCcHHHHHHhcC--------C--CCc-c-cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHH
Q 014088          180 AVIEAGVCPRLVELLR--------H--PSP-S-VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  247 (431)
Q Consensus       180 ~~~~~~~i~~L~~ll~--------~--~~~-~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~  247 (431)
                          ....+.+...+.        .  +++ . .+..--..|.+....++...     .-.+|.|++-|.++ ...++..
T Consensus       158 ----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~~K~D  227 (262)
T PF14500_consen  158 ----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPSVKLD  227 (262)
T ss_pred             ----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcHHHHH
Confidence                123333444332        1  122 2 33444455555544444332     25789999999999 8889999


Q ss_pred             HHHHHHHhhc
Q 014088          248 ACWTISNITA  257 (431)
Q Consensus       248 a~~~L~nl~~  257 (431)
                      ++.+|..++.
T Consensus       228 ~L~tL~~c~~  237 (262)
T PF14500_consen  228 SLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHH
Confidence            9999998876

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.49  E-value=1.5  Score=38.11  Aligned_cols=203  Identities=16%  Similarity=0.172  Sum_probs=116.0

Q ss_pred             hHHHHH-hhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088           61 VPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE  139 (431)
Q Consensus        61 i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  139 (431)
                      ++.|+. +-+..++..+...+.+|..++.+.......     +++.+..+. ...+.+.+..+.+.+..+...++..-  
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~r~f--   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKANDRHF--   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCchHH--
Confidence            344555 344588999999999999999766111222     234444444 45555555667777777766542111  


Q ss_pred             hHhhhHHHHHHh--h------c--CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHH
Q 014088          140 QTRPALPALERL--I------H--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRT  208 (431)
Q Consensus       140 ~~~~~i~~L~~l--L------~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~  208 (431)
                         +.+..++..  +      .  +...+.......++..++...++...     .+++.+..++ .+.++.++..++..
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHH
Confidence               333333322  1      1  12344555556778888877766322     4677788888 67788888889999


Q ss_pred             HhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCH
Q 014088          209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEF  284 (431)
Q Consensus       209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~  284 (431)
                      +..++...--...     .....+.+.+..+..+.+.+..+..+..+... .+..........++..+.++....+.
T Consensus       146 l~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  146 LAPLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence            9999843211111     23444555555554566666555444444432 11222233444567777777766653

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.47  E-value=1.2  Score=41.53  Aligned_cols=275  Identities=18%  Similarity=0.173  Sum_probs=142.0

Q ss_pred             ChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH-hhcCCCCCC
Q 014088           60 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL  137 (431)
Q Consensus        60 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~  137 (431)
                      -+..++.-+++ .+..+|..++--|+.-+.+ +.++..+...|....+.+.+...++..+...++.++.. ++.+.....
T Consensus        22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~  100 (361)
T PF07814_consen   22 EVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH  100 (361)
T ss_pred             HHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence            35666666663 5678888888888888875 46899999999999999999655555355555444444 444434444


Q ss_pred             hhhHhhhHHHHHHhhcCC-ChHHHHHHH-HHHHHhccCChHHHHHHHHhCcHHHHHHhc---------CCCCcccHHHHH
Q 014088          138 FEQTRPALPALERLIHSN-DDEVLTDAC-WALSYLSDGTNDKIQAVIEAGVCPRLVELL---------RHPSPSVLIPAL  206 (431)
Q Consensus       138 ~~~~~~~i~~L~~lL~~~-~~~v~~~a~-~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---------~~~~~~v~~~a~  206 (431)
                      ..........+..++... ..++....- .-=.++++        ..+ ..+..+...+         .....+.+..++
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk--------~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lal  171 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK--------VQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLAL  171 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchhhhhhhhhhH--------HHH-HHHHHHHHHHhccccccccCCcccccccHHH
Confidence            333345556666666611 000000000 00000110        110 1112122222         122344566667


Q ss_pred             HHHhHhhcC--------------ChhhhHHHhhcCChHHHHHHhcc----cc-----------hhhHHHHHHHHHHHhhc
Q 014088          207 RTVGNIVTG--------------DDMQTQCIINHQALPCLLDLLTQ----NY-----------KKSIKKEACWTISNITA  257 (431)
Q Consensus       207 ~~l~~l~~~--------------~~~~~~~~~~~~~l~~L~~lL~~----~~-----------~~~v~~~a~~~L~nl~~  257 (431)
                      .++..++..              .+.....+.+.|++..++.++.+    ..           +...-..++++|-|.+.
T Consensus       172 l~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~  251 (361)
T PF07814_consen  172 LALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTF  251 (361)
T ss_pred             HHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHh
Confidence            766666411              11223344556778888888752    10           12233456777777776


Q ss_pred             CCHHHHHHHHHh--CCHHHHHHHH-c---cCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHH---Hh----hcCC
Q 014088          258 GNVNQIQAIIEA--GIIGPLVNLL-L---NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL---CD----LLNC  324 (431)
Q Consensus       258 ~~~~~~~~l~~~--~~i~~L~~ll-~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L---~~----ll~~  324 (431)
                      .+.++..+++..  +.++.+...+ .   .....+...+++.+.|+..+++ +.+..+...++...+   ..    ....
T Consensus       252 ~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~-~~c~~~~s~~l~~~~~~i~~~~~~~~~~  330 (361)
T PF07814_consen  252 LSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNP-SACEEFASPKLGQQLGLIVTSFFCVLSL  330 (361)
T ss_pred             cCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCc-cchHhhhhhHhccchHHHHHhhcccccc
Confidence            555555555542  2333333332 2   2234446778999999987653 333333333221111   11    1111


Q ss_pred             -------CCHHHHHHHHHHHHHHHHhhh
Q 014088          325 -------PDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       325 -------~~~~v~~~al~~L~~l~~~~~  345 (431)
                             ..-+..-.+++++.|+++..+
T Consensus       331 ~~~~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  331 PNYVPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             cccccccccchHHHHHHHhHHHheeeCc
Confidence                   122566677888888877654

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=95.45  E-value=0.029  Score=44.42  Aligned_cols=75  Identities=19%  Similarity=0.286  Sum_probs=62.2

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE  392 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~  392 (431)
                      ++..|..-+.++++.++..|+..|..++++++..           |+..+.+..+++.|..+... .+++|++++..++.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~-----------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~  106 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR-----------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK  106 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-----------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            4555666677789999999999999999998764           67778888999999999766 89999999999999


Q ss_pred             HhcCCCC
Q 014088          393 TYWVEED  399 (431)
Q Consensus       393 ~~~~~e~  399 (431)
                      .|-..-.
T Consensus       107 ~W~~~f~  113 (144)
T cd03568         107 QWADEFK  113 (144)
T ss_pred             HHHHHhC
Confidence            8764443

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.38  E-value=1.9  Score=40.39  Aligned_cols=194  Identities=16%  Similarity=0.221  Sum_probs=119.1

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHH---HhhcCCCCCChhhHhhhHHHHHHhhcC
Q 014088           78 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS---NFCRGKPQPLFEQTRPALPALERLIHS  154 (431)
Q Consensus        78 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~~~~i~~L~~lL~~  154 (431)
                      .|+.+|-.+....+.....+...+++..+++.+...        ...++.   +-..+. ............  ...+..
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~E--------v~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~i~~   71 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYE--------VDFALEENKNEEAGS-GIPPEYKESSVD--GYSISY   71 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHH--------HHHHHhcccccCCCC-CCCCCccccccc--ccccCH
Confidence            356666666655555566778899999999998321        111222   111111 000000000000  000001


Q ss_pred             CChHHHHHHHHHHHHhcc---CChHHHHHHHH-hCcHHHHHHhcCCC---CcccHHHHHHHHhHhhcCChhhhHHHhhcC
Q 014088          155 NDDEVLTDACWALSYLSD---GTNDKIQAVIE-AGVCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQTQCIINHQ  227 (431)
Q Consensus       155 ~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~-~~~i~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  227 (431)
                      ......+..+..+..+..   +.....+.+++ ..++..|..++.+.   .+.+-..++.++..+....+.....+.+.|
T Consensus        72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~G  151 (379)
T PF06025_consen   72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAG  151 (379)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcC
Confidence            112334444555554444   23334444566 55666777777764   367888899999999999998888899999


Q ss_pred             ChHHHHHHhc-cc--chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCC
Q 014088          228 ALPCLLDLLT-QN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE  283 (431)
Q Consensus       228 ~l~~L~~lL~-~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~  283 (431)
                      +.+.+++.+. ..  ...++....-.+++.+|-+ ....+.+.+.+.++.+++++.+++
T Consensus       152 l~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  152 LIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             ChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence            9999999987 33  2455555555677777766 777888888999999999998764

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=95.33  E-value=0.68  Score=45.75  Aligned_cols=154  Identities=14%  Similarity=0.143  Sum_probs=103.4

Q ss_pred             hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-cCCCCcccHHHHHHHHhHhhcCC
Q 014088          138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGD  216 (431)
Q Consensus       138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~  216 (431)
                      ......++|.|...+++.+..++..++..+..+++.-+.   ..++.-+++.+..+ +.+.+..++..++-|++.++..-
T Consensus       384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l  460 (700)
T KOG2137|consen  384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL  460 (700)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence            344577889999999999999999999999988876552   24555677888776 35577889999999999998322


Q ss_pred             hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHH--HHHHHHH
Q 014088          217 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK--KEAAWAI  294 (431)
Q Consensus       217 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~--~~a~~aL  294 (431)
                      +    ...-...+..+.+..+.. ++.+......+..++....+.. ..++...++|.++.+...+.-...  ...+..+
T Consensus       461 D----~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i  534 (700)
T KOG2137|consen  461 D----KAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEI  534 (700)
T ss_pred             H----HHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHHHHHHHHHHH
Confidence            2    121123455566666666 7888888888888877642332 344455688888888776643222  2234444


Q ss_pred             HHhcCC
Q 014088          295 SNATSG  300 (431)
Q Consensus       295 ~~l~~~  300 (431)
                      ..+...
T Consensus       535 ~~ml~~  540 (700)
T KOG2137|consen  535 RLMLSA  540 (700)
T ss_pred             HHHHhh
Confidence            444443

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.28  E-value=2  Score=38.20  Aligned_cols=212  Identities=14%  Similarity=0.118  Sum_probs=140.0

Q ss_pred             HHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhH---HHh--hcCChHHHHHHhcccch-hhHHHHHHHHH
Q 014088          179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ---CII--NHQALPCLLDLLTQNYK-KSIKKEACWTI  252 (431)
Q Consensus       179 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~---~~~--~~~~l~~L~~lL~~~~~-~~v~~~a~~~L  252 (431)
                      +.+.+.|.+..++..+...+.+.+..++.+..++-...-..+.   ..+  +..++..+++-   -.+ +++...+...+
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml  149 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML  149 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence            4467779999999999988888888888888888654321111   111  22233333333   212 45555555566


Q ss_pred             HHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCC----hHHHHhhcCCCCHH
Q 014088          253 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC----IKPLCDLLNCPDPR  328 (431)
Q Consensus       253 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~----l~~L~~ll~~~~~~  328 (431)
                      ..+.++ +.....+..+.-+......++.+..++...|..++..+..... .....+...+.    .+.-..++++.+.-
T Consensus       150 rEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk-~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv  227 (342)
T KOG1566|consen  150 RECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHK-SVVAEFLIRNYDNFFAEVYEKLLRSENYV  227 (342)
T ss_pred             HHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhH-HHHHHHHHhChhhhHHHHHHHHhccccee
Confidence            666665 6667777788888999999999999999999999998887653 33333343332    33355677788888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 014088          329 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPL  404 (431)
Q Consensus       329 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~~~  404 (431)
                      ++..++..++.++........         ....+.+...++.+..++.+++..++-.|=.+.-.+.....+.++.
T Consensus       228 tkrqs~kllg~llldr~N~~~---------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V  294 (342)
T KOG1566|consen  228 TKRQSLKLLGELLLDRSNSAV---------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPV  294 (342)
T ss_pred             hHHHHHHhHHHHHhCCCcHHH---------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchH
Confidence            888899998888765544332         2455555566777777877777777766666665555555555554

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.26  E-value=3.7  Score=41.07  Aligned_cols=280  Identities=14%  Similarity=0.060  Sum_probs=156.6

Q ss_pred             CCChHHHHHhhCC--------CCHHHHHHHHHHHHHhcC--CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHH
Q 014088           58 HGAVPIFVRLLSS--------PTDDVREQAVWALGNVAG--DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS  127 (431)
Q Consensus        58 ~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  127 (431)
                      .|+++.+...|..        .+..-.+.|++.++++..  ..+....-+++.-.++.++..+ +++.--++..+|..++
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is  485 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence            4899999998832        224445678888888764  2222223444444556666666 6667778899999999


Q ss_pred             HhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCCcccHHH
Q 014088          128 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIP  204 (431)
Q Consensus       128 ~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~  204 (431)
                      .+..+-  ...............++++++-.++..|+.++..+..+..  .......   +.++.++.+-+.-+.++...
T Consensus       486 ~~eeDf--kd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sahVp~tmekLLsLSn~feiD~LS~  561 (970)
T COG5656         486 TIEEDF--KDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAHVPETMEKLLSLSNTFEIDPLSM  561 (970)
T ss_pred             HHHHhc--ccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence            995543  3334445677778888888888899999999988776652  1222222   34444555444444444444


Q ss_pred             HHHHHh-HhhcCChhhhHHHhh---cCChHHHHHHhcccc-----hhhHHHHHHHHHHHhhc------CCHHHHHHHHHh
Q 014088          205 ALRTVG-NIVTGDDMQTQCIIN---HQALPCLLDLLTQNY-----KKSIKKEACWTISNITA------GNVNQIQAIIEA  269 (431)
Q Consensus       205 a~~~l~-~l~~~~~~~~~~~~~---~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~------~~~~~~~~l~~~  269 (431)
                      ++..+. .++..-......+..   ...++....++.++.     .++-+..|...|..+..      ..++..+.+.. 
T Consensus       562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~-  640 (970)
T COG5656         562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV-  640 (970)
T ss_pred             HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH-
Confidence            443332 222211111111111   122333333443331     12234444455544332      34444444433 


Q ss_pred             CCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCH-HHHHHHHHHHHHHHHhhhh
Q 014088          270 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP-RIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       270 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~al~~L~~l~~~~~~  346 (431)
                      ...|.+--++.+.-.++-.+|+..+-+...... +..+  ..-|+.+.+.+++..... .-.+.+.-++.|++..+..
T Consensus       641 slypvi~Filkn~i~dfy~Ea~dildg~tf~sk-eI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~  715 (970)
T COG5656         641 SLYPVISFILKNEISDFYQEALDILDGYTFMSK-EIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKT  715 (970)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHH-Hhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence            355555555666677777888888876654221 1111  123566677777766653 5567778889999887744

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=95.20  E-value=2.6  Score=40.33  Aligned_cols=265  Identities=11%  Similarity=0.101  Sum_probs=124.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC----CCCChhhHhhhHH
Q 014088           71 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK----PQPLFEQTRPALP  146 (431)
Q Consensus        71 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~i~  146 (431)
                      +++-+-...++++..+-..-......+.. ..+..+....++.+++..-.+...+++.+.+..    +.........++|
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            45666666677766655444333333322 122223333334456777777777777776543    2222345578899


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhh
Q 014088          147 ALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  225 (431)
Q Consensus       147 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  225 (431)
                      .+..+|+.+-.+..-++...++.+.+..+ ......+ ..+++.|+.-.--....-.-...+.|..+....+...   ..
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y-~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i---~~  196 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAY-KQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI---VA  196 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTT-GGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHH-HHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---cc
Confidence            99999998878888888888888876544 1111011 0222322211100122223445556655554333222   22


Q ss_pred             cC----ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-HHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcC
Q 014088          226 HQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATS  299 (431)
Q Consensus       226 ~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  299 (431)
                      .+    ++..+-+++.+. ..  -.++...|..+...-+ +.....+.. ++..++.-|++. ..+.++.-+..++.++.
T Consensus       197 ~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~~~~~  272 (435)
T PF03378_consen  197 NNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLSLFAI  272 (435)
T ss_dssp             -S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence            22    333444555555 22  2346666666665322 233333332 455555556544 66666666666666655


Q ss_pred             CCCHHHHHHHHH---CCChHHHHhh-----c-CCCCHHHHHHHHHHHHHHHHhh
Q 014088          300 GGSNEQIKFLVS---QGCIKPLCDL-----L-NCPDPRIVTVCLEGLENILKAG  344 (431)
Q Consensus       300 ~~~~~~~~~l~~---~~~l~~L~~l-----l-~~~~~~v~~~al~~L~~l~~~~  344 (431)
                      ..+++..-...+   .|+...+.+-     + +-..+.-++.+.-++.+++...
T Consensus       273 ~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es  326 (435)
T PF03378_consen  273 KYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES  326 (435)
T ss_dssp             HH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred             HcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence            444444333332   2333333321     1 1123334555666677766443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.19  E-value=3.3  Score=40.23  Aligned_cols=143  Identities=15%  Similarity=0.136  Sum_probs=80.5

Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088          103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  182 (431)
Q Consensus       103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  182 (431)
                      +..++.+..++.++.....++.++-.+..+. .........++..|.......  +....+-.++.||+...-..     
T Consensus       178 v~~i~~iC~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-----  249 (464)
T PF11864_consen  178 VDQICTICKSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-----  249 (464)
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-----
Confidence            3444444334444444455555555555542 222233344555555554333  55666677777777544222     


Q ss_pred             HhCcHHHHHHhcCC------CCcccHHHHHHHHhHhhcCChhhhHHHh-hcC--ChHHHHHHhcccchhhHHHHHHHHHH
Q 014088          183 EAGVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDMQTQCII-NHQ--ALPCLLDLLTQNYKKSIKKEACWTIS  253 (431)
Q Consensus       183 ~~~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~  253 (431)
                        ..+..|..+|..      .+..+.+-|+..+..+..+.......-+ -..  +++.+...++.. +..+-.+.+..+.
T Consensus       250 --~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~  326 (464)
T PF11864_consen  250 --SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLIN  326 (464)
T ss_pred             --HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHH
Confidence              245667777732      2344566788888887766522221112 222  788888888877 7777777777777


Q ss_pred             Hhh
Q 014088          254 NIT  256 (431)
Q Consensus       254 nl~  256 (431)
                      ++.
T Consensus       327 ~ll  329 (464)
T PF11864_consen  327 RLL  329 (464)
T ss_pred             HHH
Confidence            776

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.11  E-value=1  Score=43.01  Aligned_cols=166  Identities=11%  Similarity=0.072  Sum_probs=116.3

Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC----cccHHHHHHHHhHhhcCChh
Q 014088          143 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDM  218 (431)
Q Consensus       143 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~l~~l~~~~~~  218 (431)
                      .....+.+.+.+++...+..++..+..++.+. .....++...++..|..++.+++    ..+...++.++..+....- 
T Consensus        83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   83 HYAKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            45567788888888888888888888888665 46677888889999999987754    3556667777766655432 


Q ss_pred             hhHHHhhcCChHHHHHHhccc-chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          219 QTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       219 ~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                      .....+...++.....+..-. .+..+-..|+..+-++..+++...+.+.+.--+..|+..++..+..++..|+..+..+
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            111122223333333333211 1456677788888888887777777777777899999999999999999998888888


Q ss_pred             cCCCCHHHHHHHH
Q 014088          298 TSGGSNEQIKFLV  310 (431)
Q Consensus       298 ~~~~~~~~~~~l~  310 (431)
                      .....++.++.+.
T Consensus       241 ~~~a~~~~R~~~~  253 (713)
T KOG2999|consen  241 FRKAPDDKRFEMA  253 (713)
T ss_pred             HhhCChHHHHHHH
Confidence            8777655444443

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.08  E-value=3.6  Score=39.99  Aligned_cols=251  Identities=14%  Similarity=0.095  Sum_probs=137.2

Q ss_pred             CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      ...++.|..++..|..++......-. ...    ..+...+. ...++-...-+.+|..|+.+..+.  ...+.+..+.+
T Consensus        40 ~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L  112 (464)
T PF11864_consen   40 NQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFL  112 (464)
T ss_pred             CCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHH
Confidence            33457888888888888764432110 000    11111222 233433444556666666555443  22345566666


Q ss_pred             HHHhccc--------------------------cchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhc-CCChH
Q 014088          107 LAQFNEH--------------------------AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIH-SNDDE  158 (431)
Q Consensus       107 ~~~l~~~--------------------------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~-~~~~~  158 (431)
                      ...+...                          .+.......+..+.++.+.+ .........+++..++.+-. ..+++
T Consensus       113 ~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~  192 (464)
T PF11864_consen  113 LSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSED  192 (464)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHH
Confidence            6655211                          12233445555666666665 33344455666666666643 33444


Q ss_pred             HHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHH
Q 014088          159 VLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  235 (431)
Q Consensus       159 v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l  235 (431)
                      ....++..+-.+...   +++...     .++..|.....  ..+....+-+++.||+...-.+       ..+..|..+
T Consensus       193 di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~~--~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~i  258 (464)
T PF11864_consen  193 DIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIVN--SVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDI  258 (464)
T ss_pred             HHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHhc--ccccchhHHHHHHHHHcCccHH-------HHHHHHHHH
Confidence            556666666555432   111111     23333444422  2267778888999998754322       235667777


Q ss_pred             hccc-----chhhHHHHHHHHHHHhhcCCHHHHHHHHH-hC--CHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          236 LTQN-----YKKSIKKEACWTISNITAGNVNQIQAIIE-AG--IIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       236 L~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~--~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      |.++     .+..+.+-|+..+..+..+..+....-+. .-  +++.+...++.++..+-.+++..+.++..
T Consensus       259 L~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  259 LRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             HcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            7321     14566778888888888754222221122 22  68888888888887777788888888774

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=94.95  E-value=0.34  Score=39.29  Aligned_cols=143  Identities=9%  Similarity=0.025  Sum_probs=82.0

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS   99 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   99 (431)
                      .+..+|....++.+|.+++++|+.+-.-++...+.+....  +.-  .-............. ........    +...-
T Consensus        14 ~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~-~~~~~~~~----ee~y~   84 (160)
T PF11865_consen   14 ILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLP-MMGISPSS----EEYYP   84 (160)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHh-hccCCCch----HHHHH
Confidence            4555777777799999999999999875554433222111  100  001111111111111 11111111    22223


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014088          100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  171 (431)
Q Consensus       100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  171 (431)
                      .-.+..|++.|+...-..-...++.++.++.+............++|.++..++..+...++..++-|+.+.
T Consensus        85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            335788888885444444445667777777755444446667889999999999777788877776666553

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.72  E-value=2.6  Score=36.65  Aligned_cols=140  Identities=20%  Similarity=0.084  Sum_probs=88.9

Q ss_pred             HHHHH-hhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh
Q 014088          146 PALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII  224 (431)
Q Consensus       146 ~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  224 (431)
                      |.+.. +-+..+++.+...+.+|..++.++.....     -+++.+..+...+.......+.+.+..+-..++...    
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence            44443 55567899999999999999887621112     234556666666666666667777777766555332    


Q ss_pred             hcCChHHHHHH---------hcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH-ccCCHhHHHHHHHHH
Q 014088          225 NHQALPCLLDL---------LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAI  294 (431)
Q Consensus       225 ~~~~l~~L~~l---------L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL  294 (431)
                        +.+..++..         .......+.....+.++..+|...++...     .+++.+..++ +..+..++..++.++
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHHH
Confidence              223323332         11121344455556778888886666222     3577788888 677888999999999


Q ss_pred             HHhcCCC
Q 014088          295 SNATSGG  301 (431)
Q Consensus       295 ~~l~~~~  301 (431)
                      ..++...
T Consensus       147 ~~Lc~~~  153 (234)
T PF12530_consen  147 APLCEAE  153 (234)
T ss_pred             HHHHHHh
Confidence            9998544

>PRK14707 hypothetical protein; Provisional

Probab=94.71  E-value=9.6  Score=43.07  Aligned_cols=349  Identities=15%  Similarity=0.085  Sum_probs=168.5

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  104 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  104 (431)
                      |.+=++.....+++.++..-....+..++.+-..++-..|-.+-+=++..+...+...|..=..+.++.+..+ ....+.
T Consensus       256 lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~  334 (2710)
T PRK14707        256 LSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLS  334 (2710)
T ss_pred             HhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHH
Confidence            3333333444555555544332334444444333322222223233666666666665555444555554333 223355


Q ss_pred             HHHHHhccccchhHHHHHHHHH-HHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014088          105 PLLAQFNEHAKLSMLRNATWTL-SNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  183 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  183 (431)
                      ..++-|.+=++..+.+.++..| ..++.+..-.......++-..|..+-+=++..+-..+...|..-..++....+ -++
T Consensus       335 ~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~-~~~  413 (2710)
T PRK14707        335 TALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRK-GLD  413 (2710)
T ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhh-hcc
Confidence            5666665555555555544444 44554432222222233333333333445556655666666543334444434 333


Q ss_pred             hCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH
Q 014088          184 AGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ  262 (431)
Q Consensus       184 ~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  262 (431)
                      ...+...++-|.. ++..+...+...|..-...+.+..+.+--.++...|--+-+-+ +..+...++..|..=....++.
T Consensus       414 ~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l  492 (2710)
T PRK14707        414 PQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWP-DTPICGQTASALAARLAHERRL  492 (2710)
T ss_pred             hhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHH
Confidence            3444555555544 7777777777777776665554443332223333333333445 6777777776666544444666


Q ss_pred             HHHHHHhCCHHHHHHHHccCCHhHHHHHHHH-HHHhcCCCCHHHHHHH-HHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 014088          263 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA-ISNATSGGSNEQIKFL-VSQGCIKPLCDLLNCPDPRIVTVCLEGLENI  340 (431)
Q Consensus       263 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a-L~~l~~~~~~~~~~~l-~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l  340 (431)
                      .+.+--.++...|-.+-+-++......|+.. -..+...   .+.... ...++...+-.+-+.++......+...|...
T Consensus       493 ~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~---~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~  569 (2710)
T PRK14707        493 RKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDE---LQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAER  569 (2710)
T ss_pred             HhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccc---hhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHH
Confidence            5555444444445444455665554444433 3444321   222222 2223333333444566666555555555554


Q ss_pred             HHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 014088          341 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL  391 (431)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l  391 (431)
                      +.....            ....|...+.-..+..|...++.+.-..|...|
T Consensus       570 l~~~~~------------~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~L  608 (2710)
T PRK14707        570 LADEPQ------------LPKDLHRQGVVIVLNALSKWPDTAVCAEAVNAL  608 (2710)
T ss_pred             hhcchh------------hHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHH
Confidence            432222            244454444455566666766655544444444

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.55  E-value=0.21  Score=44.04  Aligned_cols=141  Identities=17%  Similarity=0.182  Sum_probs=104.0

Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088          103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  182 (431)
Q Consensus       103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  182 (431)
                      +...+..| .+.++.....++..+..|+...+.........++..+++-+++....|-..|+.++..+...-.+.+... 
T Consensus        90 l~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~-  167 (334)
T KOG2933|consen   90 LKQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE-  167 (334)
T ss_pred             HHHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            44456666 7778999999999999999987765566667888889999999999999999999999987765554432 


Q ss_pred             HhCcHHHHHH-hcCC---CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088          183 EAGVCPRLVE-LLRH---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  257 (431)
Q Consensus       183 ~~~~i~~L~~-ll~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  257 (431)
                          +..++. ++..   ++.-++..+-.+|..++......       .+++.|...+.+. ++.++..++.+..++..
T Consensus       168 ----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  168 ----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI  234 (334)
T ss_pred             ----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence                233333 3322   34457888888998887654322       3567788888888 89999988877776654

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.50  E-value=3.9  Score=37.71  Aligned_cols=164  Identities=16%  Similarity=0.164  Sum_probs=113.2

Q ss_pred             HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc-CChhhhHHHhhc-C-ChHHHHHHhcccc---h---------hhHH
Q 014088          181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINH-Q-ALPCLLDLLTQNY---K---------KSIK  245 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~~---~---------~~v~  245 (431)
                      +++.. ++.+.+.|......+...+++.|..++. ........+... + -.+.+.+++....   .         +.+|
T Consensus        53 iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR  131 (330)
T PF11707_consen   53 ILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR  131 (330)
T ss_pred             HHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence            44433 6778888888888888999999999998 444555555422 1 2334555553220   1         2888


Q ss_pred             HHHHHHHHHhhc-CCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHHHH-hcCCC--CHHHHHHHHHCCChHHHHh
Q 014088          246 KEACWTISNITA-GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISN-ATSGG--SNEQIKFLVSQGCIKPLCD  320 (431)
Q Consensus       246 ~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~-l~~~~--~~~~~~~l~~~~~l~~L~~  320 (431)
                      ...+..+..+.. .++..+..+++ .+.+..+.+-+..++.++....+.++.. +....  .+.....+.....+..|..
T Consensus       132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~  211 (330)
T PF11707_consen  132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS  211 (330)
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence            888876666555 66777777776 5568888888888888999999999985 43332  2344445566778999999


Q ss_pred             hcCCCCH----HHHHHHHHHHHHHHHhhh
Q 014088          321 LLNCPDP----RIVTVCLEGLENILKAGE  345 (431)
Q Consensus       321 ll~~~~~----~v~~~al~~L~~l~~~~~  345 (431)
                      +....++    .+...+-..|..++....
T Consensus       212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  212 LYSRDGEDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             HhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence            8887776    788888888888775443

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.45  E-value=0.28  Score=40.93  Aligned_cols=125  Identities=18%  Similarity=0.131  Sum_probs=80.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCChHHHHHHH---------------HcCChHHHHHHhcc-----ccchhHHHHHHHHHHHh
Q 014088           70 SPTDDVREQAVWALGNVAGDSPKCRDLVL---------------SNGALMPLLAQFNE-----HAKLSMLRNATWTLSNF  129 (431)
Q Consensus        70 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~---------------~~~~i~~l~~~l~~-----~~~~~~~~~a~~~L~~l  129 (431)
                      ++.......++..|+|++......+..+-               +...+..|+..+.+     .....-..+.+.++.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            44555667788899999876655432221               12245666666644     12345667889999999


Q ss_pred             hcCCCCCChhhH--hh--hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH---hCcHHHHHHhcC
Q 014088          130 CRGKPQPLFEQT--RP--ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELLR  195 (431)
Q Consensus       130 ~~~~~~~~~~~~--~~--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll~  195 (431)
                      ++....+.....  ..  .+..|+.++++.+..-|..++.++.|++-..+.... +..   .++++.++--|.
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~-LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEW-LLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHH-hcCchhhhhHHHHHhhcc
Confidence            988644444432  23  377888888888777788899999999977654422 333   244555444443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.45  E-value=0.53  Score=45.33  Aligned_cols=104  Identities=16%  Similarity=0.172  Sum_probs=74.0

Q ss_pred             HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc--C
Q 014088          181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--G  258 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~  258 (431)
                      +++ +.+..+++-+.+++..||..++++|..++..-.+ +...+-.+++..|.+-+-+. .+.||.+|+.+|+.+-.  .
T Consensus        88 ~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          88 LVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             HHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccC
Confidence            444 6777788888889999999999999998865433 23334447778888888777 89999999999998865  3


Q ss_pred             CHHHHHHHHHhCCHHHHHHHHcc-CCHhHHHHHHHHH
Q 014088          259 NVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAI  294 (431)
Q Consensus       259 ~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL  294 (431)
                      ++++.       ....+..+++. ++.+||+.|+.-+
T Consensus       165 neen~-------~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         165 NEENR-------IVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             ChHHH-------HHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            34322       23456666654 4788887765433

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.44  E-value=0.31  Score=33.33  Aligned_cols=67  Identities=16%  Similarity=0.193  Sum_probs=52.5

Q ss_pred             HHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 014088          202 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG  270 (431)
Q Consensus       202 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  270 (431)
                      .+.+++++++++.... ....+.+.++++.++++..+.+...+|-.|.++|+-++.. .+....+-+.|
T Consensus         4 lKaaLWaighIgss~~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPL-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChH-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            4679999999987543 4455557799999999998876889999999999999876 56565555544

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.38  E-value=0.42  Score=39.94  Aligned_cols=82  Identities=10%  Similarity=0.178  Sum_probs=64.1

Q ss_pred             ChHhHHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhH
Q 014088           48 TSENTRVVIDHGAVPIFVRLLSS---------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM  118 (431)
Q Consensus        48 ~~~~~~~~~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~  118 (431)
                      +....+.+++.||+..|+.+|..         .+......++.||..+.....+....+...+.+..++..| .+++..+
T Consensus        96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~  174 (187)
T PF06371_consen   96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL-DSPNIKT  174 (187)
T ss_dssp             -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHH
T ss_pred             CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH-CCCCHHH
Confidence            45677788888999999998853         3457888999999999877766555566678889999998 7889999


Q ss_pred             HHHHHHHHHHhh
Q 014088          119 LRNATWTLSNFC  130 (431)
Q Consensus       119 ~~~a~~~L~~l~  130 (431)
                      +..++.+|..+|
T Consensus       175 r~~~leiL~~lc  186 (187)
T PF06371_consen  175 RKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=94.35  E-value=0.57  Score=53.36  Aligned_cols=282  Identities=13%  Similarity=0.146  Sum_probs=154.1

Q ss_pred             hhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHH------hCCChHHHHHh-hCCCCHHHHHHHH
Q 014088            8 FECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVI------DHGAVPIFVRL-LSSPTDDVREQAV   80 (431)
Q Consensus         8 ~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~g~i~~L~~l-L~~~~~~v~~~a~   80 (431)
                      ++....+.+++..+..++. .++++++..+...+..+...... .....      .+..+..+..+ +..+++.++....
T Consensus       473 ~~~~~~~~~~~~~~~~~~~-~~~~e~r~~~~l~~~~ll~~~~~-~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~  550 (2341)
T KOG0891|consen  473 FSGYSLTLFVQQCVDSYLE-ADDSEIRKNAALTCCELLKYDII-CSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVL  550 (2341)
T ss_pred             hhhhhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhhh-hhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHH
Confidence            3445667777766666665 56678888887776665543222 11111      11222333332 2235566655544


Q ss_pred             HHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhH-hhhHHHHHHhhcCCChHH
Q 014088           81 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEV  159 (431)
Q Consensus        81 ~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v  159 (431)
                      ..+.   .   ..-....+.+.+..+...+ ++..-.++..+...+++++..+|....... ...+..+..+..+.-..+
T Consensus       551 ~~l~---~---~~~~~laQ~~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~  623 (2341)
T KOG0891|consen  551 SSLN---E---RFDAQLAQPDLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMART  623 (2341)
T ss_pred             hhhc---c---chhhhhcCchhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHh
Confidence            4433   1   1112233334444455555 666677888888888888887652222221 112222222222333322


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc
Q 014088          160 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN  239 (431)
Q Consensus       160 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  239 (431)
                      ...+..-+..+....+..+...++ ..+..++..+...++.+...+..+++.|+...........+ ..++.+.+.+...
T Consensus       624 ~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~  701 (2341)
T KOG0891|consen  624 KEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQ  701 (2341)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHh
Confidence            333333333333333333332332 45566777788888888899999999999876644444455 6777788877766


Q ss_pred             chhhHHHHHHHHHHHhhcCCHHHHHHHH-HhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCC
Q 014088          240 YKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSG  300 (431)
Q Consensus       240 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~  300 (431)
                      .+..-|..+.++++++.....-...... ..-++..+...+... ...++..++..++++...
T Consensus       702 s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  702 SSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             hhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            4677788899999999873211111111 122345555555544 566777888888766543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=94.34  E-value=0.47  Score=38.48  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHH
Q 014088          227 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ  264 (431)
Q Consensus       227 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  264 (431)
                      .+++.|+++|+++.+..+|.++++++|.+.+-+|...+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k   47 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK   47 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence            45778888898886799999999999999886565444

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.24  E-value=2.3  Score=42.15  Aligned_cols=231  Identities=14%  Similarity=0.092  Sum_probs=131.5

Q ss_pred             HHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC---CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc--
Q 014088           98 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ---PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD--  172 (431)
Q Consensus        98 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--  172 (431)
                      ++.|+++.++..-.+-+...+....-.+|+.+......   .......-.=|.+..-|+-.|..||.+|+..+.++.-  
T Consensus       126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~  205 (1005)
T KOG1949|consen  126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR  205 (1005)
T ss_pred             HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence            35566666665543333334444445566666554311   1111223344567778888999999999999998762  


Q ss_pred             CCh---HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcC----ChHHHHHHhcccchhhHH
Q 014088          173 GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ----ALPCLLDLLTQNYKKSIK  245 (431)
Q Consensus       173 ~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~~v~  245 (431)
                      +++   .....+++ .-...+..+|.++-+.+|..|..-+.....    ....++-..    ++..+..-+......+||
T Consensus       206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s----~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR  280 (1005)
T KOG1949|consen  206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITS----KFWEMIPPTILIDLLKKITDELAFDTSSDVR  280 (1005)
T ss_pred             CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHH----HHHHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence            222   12233444 335678899999999999998776666543    122233222    333333333333356888


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 014088          246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  325 (431)
Q Consensus       246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~  325 (431)
                      ......|..+... |.. ..+.+. ++|.+-..+++.+..||..+...|..+-...-    -.+..-=-++.++.-|..+
T Consensus       281 ~svf~gl~~~l~n-p~s-h~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra----~~f~~I~~~d~~l~~L~~d  353 (1005)
T KOG1949|consen  281 CSVFKGLPMILDN-PLS-HPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAVRA----AKFWKICPMDHILVRLETD  353 (1005)
T ss_pred             hhHhcCcHHHHcC-ccc-hhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhhhh----hhhhccccHHHHHHHHhcc
Confidence            8888887777664 321 223333 45666667788888999988888887733211    1111111244455555555


Q ss_pred             CHHHHHHHHHHHHHH
Q 014088          326 DPRIVTVCLEGLENI  340 (431)
Q Consensus       326 ~~~v~~~al~~L~~l  340 (431)
                      +..+....+..|-+.
T Consensus       354 ~~~v~rr~~~li~~s  368 (1005)
T KOG1949|consen  354 SRPVSRRLVSLIFNS  368 (1005)
T ss_pred             ccHHHHHHHHHHHHh
Confidence            555554444444433

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.20  E-value=5.2  Score=37.91  Aligned_cols=232  Identities=16%  Similarity=0.172  Sum_probs=137.1

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcCCCh---HHHHHHHHcCChHHHHHHhcc------ccchhHHHHHHHHHHHhhcCCC
Q 014088           64 FVRLLSSPTDDVREQAVWALGNVAGDSP---KCRDLVLSNGALMPLLAQFNE------HAKLSMLRNATWTLSNFCRGKP  134 (431)
Q Consensus        64 L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~~i~~~~~i~~l~~~l~~------~~~~~~~~~a~~~L~~l~~~~~  134 (431)
                      +..+++..++.-+-.++.....++...+   ..++.++++-+.+.+-+++.+      .++.-.+..+..+|..+|+.++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            5566666777777788888888876443   345667777777777777743      2344456668888999998875


Q ss_pred             CCChhhHhhhHHHHHHhhcCC-ChH------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccH-HHHH
Q 014088          135 QPLFEQTRPALPALERLIHSN-DDE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL-IPAL  206 (431)
Q Consensus       135 ~~~~~~~~~~i~~L~~lL~~~-~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~-~~a~  206 (431)
                      -.....+-.-||.+..++... +++      ....+..+|..++...+.. ..++..|.++.+.+.-..++...- ..++
T Consensus        96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~~~~~~~d~alal  174 (698)
T KOG2611|consen   96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYELPDGSHDMALAL  174 (698)
T ss_pred             hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHhCCCCchhHHHHH
Confidence            555555567889999888743 333      6788999999999886554 558888999999887655443332 2333


Q ss_pred             HHHhHhhcCCh---hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-H-HHHHH----HHhCCHHHHHH
Q 014088          207 RTVGNIVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-N-QIQAI----IEAGIIGPLVN  277 (431)
Q Consensus       207 ~~l~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~-~~~~l----~~~~~i~~L~~  277 (431)
                      .++.-.....+   +....+..  ++..+..=+... +...+-+.|..|..+....+ + ....+    +-.....-+..
T Consensus       175 ~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~  251 (698)
T KOG2611|consen  175 KVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVA  251 (698)
T ss_pred             HHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHH
Confidence            33333332211   11111111  133333334444 56778888888885543211 1 11111    11122334556


Q ss_pred             HHccC-CHhHHHHHHHHHHHhcC
Q 014088          278 LLLNA-EFEIKKEAAWAISNATS  299 (431)
Q Consensus       278 ll~~~-~~~v~~~a~~aL~~l~~  299 (431)
                      +|++. .+.-|..|+....+++.
T Consensus       252 IL~~kv~p~qr~pAL~Laa~~~h  274 (698)
T KOG2611|consen  252 ILQNKVAPSQRLPALILAANMMH  274 (698)
T ss_pred             HHhcccCchhcChHHHHHHHHHH
Confidence            66665 45555555555555543

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.19  E-value=1.2  Score=36.71  Aligned_cols=143  Identities=15%  Similarity=0.188  Sum_probs=89.3

Q ss_pred             cHHHHHHHHhHhhcCChhh-----hHHHh------hcCChHHHHH-HhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 014088          201 VLIPALRTVGNIVTGDDMQ-----TQCII------NHQALPCLLD-LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE  268 (431)
Q Consensus       201 v~~~a~~~l~~l~~~~~~~-----~~~~~------~~~~l~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  268 (431)
                      +|..|+.+|..++...+..     -..++      ..+.-+.|+. ++.++ ++++|..|+.++..+-.++.......-+
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            5677777777777652211     11111      1223334444 44555 9999999999999998875544433322


Q ss_pred             hC-------------------CHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 014088          269 AG-------------------IIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  328 (431)
Q Consensus       269 ~~-------------------~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  328 (431)
                      .+                   +...|+..+..+ +..+....+.++..+..+......+.=.-..++..+..++.+.|+.
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence            11                   234455555555 6778888999999998877554433212223455666667778899


Q ss_pred             HHHHHHHHHHHHHHhh
Q 014088          329 IVTVCLEGLENILKAG  344 (431)
Q Consensus       329 v~~~al~~L~~l~~~~  344 (431)
                      ++..++.++..++...
T Consensus       161 v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9988888888876543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.18  E-value=1.9  Score=41.02  Aligned_cols=233  Identities=14%  Similarity=0.100  Sum_probs=130.9

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 014088           55 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  134 (431)
Q Consensus        55 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  134 (431)
                      .++...+..|+.++.++++.-|.....+|.++-..-...|..+.. .....+.+.+.......-...++.+++.+..+..
T Consensus       129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred             HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence            445567888999999999999999998888887544444444432 3345566666555566667778888888887753


Q ss_pred             CCC-hhhHhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHh
Q 014088          135 QPL-FEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  212 (431)
Q Consensus       135 ~~~-~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l  212 (431)
                      ... .....-+...++.+...+. .........++......++.....     ++..+++.=-..++.-....+.-+..+
T Consensus       208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~WP~t~s~Kev~FL~el~~i  282 (409)
T PF01603_consen  208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHWPKTNSQKEVLFLNELEEI  282 (409)
T ss_dssp             SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCchhHHHHHHHHHHH
Confidence            332 2233444456666666553 233455555555555554443331     223333333333333333445555555


Q ss_pred             hcCCh-hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH---hCCHHHHHHHHcc----C-C
Q 014088          213 VTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN----A-E  283 (431)
Q Consensus       213 ~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~----~-~  283 (431)
                      ....+ ..... +...+...+.+.+.++ +..|.+.|+....|     +... .++.   ..++|.+..-+..    . +
T Consensus       283 l~~~~~~~f~~-i~~~lf~~la~ci~S~-h~qVAErAl~~w~n-----~~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn  354 (409)
T PF01603_consen  283 LEVLPPEEFQK-IMVPLFKRLAKCISSP-HFQVAERALYFWNN-----EYFL-SLISQNSRVILPIIFPALYRNSKNHWN  354 (409)
T ss_dssp             HTT--HHHHHH-HHHHHHHHHHHHHTSS-SHHHHHHHHGGGGS-----HHHH-HHHHCTHHHHHHHHHHHHSSTTSS-SS
T ss_pred             HHhcCHHHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHCC-----HHHH-HHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence            54332 22222 2235677788888888 88888888765432     2222 2222   2256666666644    2 6


Q ss_pred             HhHHHHHHHHHHHhcCCC
Q 014088          284 FEIKKEAAWAISNATSGG  301 (431)
Q Consensus       284 ~~v~~~a~~aL~~l~~~~  301 (431)
                      ..|+..|..++.-+...+
T Consensus       355 ~~Vr~~a~~vl~~l~~~d  372 (409)
T PF01603_consen  355 QTVRNLAQNVLKILMEMD  372 (409)
T ss_dssp             TTHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            678888888888777654

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.10  E-value=6.1  Score=43.88  Aligned_cols=269  Identities=13%  Similarity=0.100  Sum_probs=130.9

Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhh
Q 014088           65 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRP  143 (431)
Q Consensus        65 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~  143 (431)
                      +..|..+++..+-.+..+++.++...+.   ..+-....+.....+....++-.|.--..+++.+-++. ..........
T Consensus       882 ~~sl~~~~p~~rc~~~ea~arLaq~v~~---~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t  958 (2067)
T KOG1822|consen  882 VNSLINPNPKLRCAAAEALARLAQVVGS---APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT  958 (2067)
T ss_pred             hhhhccCChHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence            3334445666666666666666643221   11112245566666755556655555666777777765 3334444456


Q ss_pred             hHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc--------
Q 014088          144 ALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT--------  214 (431)
Q Consensus       144 ~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~--------  214 (431)
                      .+..+..+.+++ .+.|+.+++.++..+..........+++ .-+..+..++.+..+ .......+.+....        
T Consensus       959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~~~al 1036 (2067)
T KOG1822|consen  959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDDEDAL 1036 (2067)
T ss_pred             HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCc-chhhhhhhhccccccchhHHHH
Confidence            677777777766 5699999999999887655444343333 223334444433211 22222222222211        


Q ss_pred             ---------CChh-hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCH
Q 014088          215 ---------GDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF  284 (431)
Q Consensus       215 ---------~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  284 (431)
                               .+.. .....+....+-...-++.++ +..++.++..++.++-.-.+....   -.-+++.++.++.....
T Consensus      1037 ittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~~~ 1112 (2067)
T KOG1822|consen 1037 ITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSSYL 1112 (2067)
T ss_pred             HHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcchhh
Confidence                     1110 001111112222333344555 788888888888877653222111   11245566666655433


Q ss_pred             hHHHHHHHHHHHhcCCCCHH---HH-------------HHH-H-HCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 014088          285 EIKKEAAWAISNATSGGSNE---QI-------------KFL-V-SQGCIKPLCDLLN-CPDPRIVTVCLEGLENILK  342 (431)
Q Consensus       285 ~v~~~a~~aL~~l~~~~~~~---~~-------------~~l-~-~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~  342 (431)
                      -.|......+..+......+   ..             ... . +.|.--.+..++. ..|.+..+.....+.+++.
T Consensus      1113 i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~ 1189 (2067)
T KOG1822|consen 1113 ILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLN 1189 (2067)
T ss_pred             hhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            33333333333332211000   00             000 1 2333334455554 3456677777777777543

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.04  E-value=2.4  Score=40.72  Aligned_cols=156  Identities=13%  Similarity=0.130  Sum_probs=113.3

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCC
Q 014088           61 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPL  137 (431)
Q Consensus        61 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~  137 (431)
                      ...+++.+.+++...+..++..|..++.+.. ....+....++..|.+++.+..   ..++....+.+++.+-.+.-..-
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            4577888888888888889999999987765 5667777788999999985433   45677777777777776642111


Q ss_pred             hhhHhhhHHHHHHhhcC--CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088          138 FEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  215 (431)
Q Consensus       138 ~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~  215 (431)
                      ......++.....+.+.  -+..+...|+..+-++..+.+...+.+.+.--++.++..+...+..+...|+..+..+...
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            11223344444444432  3567788899999999888877767777777889999999999888888888888887655


Q ss_pred             Ch
Q 014088          216 DD  217 (431)
Q Consensus       216 ~~  217 (431)
                      .+
T Consensus       244 a~  245 (713)
T KOG2999|consen  244 AP  245 (713)
T ss_pred             CC
Confidence            43

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.96  E-value=0.12  Score=40.98  Aligned_cols=75  Identities=17%  Similarity=0.304  Sum_probs=61.5

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILE  392 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~  392 (431)
                      ++..|..-++++++.++..|+..|..++++++..           |+..+.+.++++.+..+.. ..+++|++++..++.
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~-----------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~  110 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH-----------FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQ  110 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH-----------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence            4566666777789999999999999999987553           6777888889999998864 788999999999999


Q ss_pred             HhcCCCC
Q 014088          393 TYWVEED  399 (431)
Q Consensus       393 ~~~~~e~  399 (431)
                      .+-..-.
T Consensus       111 ~W~~~f~  117 (142)
T cd03569         111 AWALAFR  117 (142)
T ss_pred             HHHHHhC
Confidence            8765433

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.92  E-value=4  Score=38.22  Aligned_cols=132  Identities=15%  Similarity=0.132  Sum_probs=74.2

Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH-cc--CCHhHHHHHHHHHHHhcCCCCHH-----------HHH
Q 014088          242 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LN--AEFEIKKEAAWAISNATSGGSNE-----------QIK  307 (431)
Q Consensus       242 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~--~~~~v~~~a~~aL~~l~~~~~~~-----------~~~  307 (431)
                      ..-|..|+-.+..++....+....++.. .+..++.-. .+  .+++-+..|+..++.++..+...           ...
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~-~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~  303 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSILMQ-YIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV  303 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence            4456677888888876433333322221 222232211 12  37788899999999998766210           234


Q ss_pred             HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 014088          308 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  387 (431)
Q Consensus       308 ~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a  387 (431)
                      .+....+++-|. --....|-++..|++.+..+-..-.              .+.+  .+.++.+...+.+++.-|+..|
T Consensus       304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--------------~~~l--~~~~~~l~~~L~~~~~vv~tyA  366 (370)
T PF08506_consen  304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--------------KEQL--LQIFPLLVNHLQSSSYVVHTYA  366 (370)
T ss_dssp             HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---------------HHHH--HHHHHHHHHHTTSS-HHHHHHH
T ss_pred             HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--------------HHHH--HHHHHHHHHHhCCCCcchhhhh
Confidence            445555666665 1123466777888887776543322              2222  3357888888999999998887


Q ss_pred             HHHH
Q 014088          388 VKIL  391 (431)
Q Consensus       388 ~~~l  391 (431)
                      ..++
T Consensus       367 A~~i  370 (370)
T PF08506_consen  367 AIAI  370 (370)
T ss_dssp             HHHH
T ss_pred             hhhC
Confidence            6543

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.78  E-value=0.33  Score=42.84  Aligned_cols=146  Identities=16%  Similarity=0.190  Sum_probs=96.9

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088           60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE  139 (431)
Q Consensus        60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  139 (431)
                      .+...+..|.+.++...-..+..+..++...++.....+. ..+..+++-+ ++....+-+.|+.++.-+..........
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~  166 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQ  166 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677778888888888888888888665544333222 1445566666 5667788899999999888763222222


Q ss_pred             hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088          140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  214 (431)
Q Consensus       140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  214 (431)
                      .....+-.|+.--..++.-++..|-.+|..+..+....       .+++.|+..+.+.++.++..++.++.+...
T Consensus       167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVI  234 (334)
T ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccce
Confidence            22333322222223446678999999998888765433       356778888999999999998877766543

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.65  E-value=6.4  Score=37.03  Aligned_cols=307  Identities=10%  Similarity=0.042  Sum_probs=150.7

Q ss_pred             ChHHHHHHHHHHHHHcCCCh--HhHHHHHhCCChHHHHHhhC----C-------CCHHHHHHHHHHHHHhcCCChHHHHH
Q 014088           30 FGAVQFEAAWALTNIASGTS--ENTRVVIDHGAVPIFVRLLS----S-------PTDDVREQAVWALGNVAGDSPKCRDL   96 (431)
Q Consensus        30 ~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~lL~----~-------~~~~v~~~a~~~L~~l~~~~~~~~~~   96 (431)
                      +..-|..|-..|.+......  ..+..+.  .-++.+++.++    +       .+..+..+|+.+|+.+..+..- ...
T Consensus         6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i-~~~   82 (372)
T PF12231_consen    6 DRSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEI-VST   82 (372)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHH-Hhh
Confidence            34667777777776544221  2222222  22444444332    1       2678889999999998754321 111


Q ss_pred             HHHc---CChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhc
Q 014088           97 VLSN---GALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLS  171 (431)
Q Consensus        97 i~~~---~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~  171 (431)
                      +...   -.+...+..+.. +.+..+....+|+|+.=--............++..+..+-+ -+...+....+.++.++.
T Consensus        83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll  162 (372)
T PF12231_consen   83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLL  162 (372)
T ss_pred             CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence            1111   134445555532 23445555555555442211111111122233333333333 456778889999999998


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh---hh---HHHhhcCC---------hHHHHHHh
Q 014088          172 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QT---QCIINHQA---------LPCLLDLL  236 (431)
Q Consensus       172 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---~~---~~~~~~~~---------l~~L~~lL  236 (431)
                      ...+.....-.. ..++.++..+-+....++..|..+...+...-+.   ..   ....+...         .+.+.+++
T Consensus       163 ~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi  241 (372)
T PF12231_consen  163 SQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMI  241 (372)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence            777654322211 3677777777777777777766655555422111   11   11222222         33366666


Q ss_pred             cccchhhHHHHHHHHHH-HhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC--CHHHHHHHHHCC
Q 014088          237 TQNYKKSIKKEACWTIS-NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQG  313 (431)
Q Consensus       237 ~~~~~~~v~~~a~~~L~-nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~  313 (431)
                      .+. +......-+|... -+.....-..-...+ ..+...-..++++++.+|..|..+...+....  +....+..... 
T Consensus       242 ~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~n-~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-  318 (372)
T PF12231_consen  242 KSK-DEYKLAMQIWSVVILLLGSSRLDSWEHLN-EWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-  318 (372)
T ss_pred             hCc-CCcchHHHHHHHHHHHhCCchhhccHhHh-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-
Confidence            663 2222322333333 333221110111111 13333334556779999999999888886522  11111111111 


Q ss_pred             ChHHHHhhcCCC-CH----HHHHHHHHHHHHHHHh
Q 014088          314 CIKPLCDLLNCP-DP----RIVTVCLEGLENILKA  343 (431)
Q Consensus       314 ~l~~L~~ll~~~-~~----~v~~~al~~L~~l~~~  343 (431)
                      +..++...++.+ ..    ++...++..+++++..
T Consensus       319 L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~  353 (372)
T PF12231_consen  319 LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY  353 (372)
T ss_pred             HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence            234444444432 22    6778888888888754

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.43  E-value=1.3  Score=37.04  Aligned_cols=105  Identities=16%  Similarity=0.093  Sum_probs=72.9

Q ss_pred             CCCCcccHHHHHHHHhHhhcCChhhhHHHh----------------hcCChHHHHHHhccc-----chhhHHHHHHHHHH
Q 014088          195 RHPSPSVLIPALRTVGNIVTGDDMQTQCII----------------NHQALPCLLDLLTQN-----YKKSIKKEACWTIS  253 (431)
Q Consensus       195 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~  253 (431)
                      .+++......++.+|+|++....... .++                ....+..|+..+..+     ....-....+.++.
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            34555667778888899887654332 222                123466677776551     13445667888999


Q ss_pred             HhhcCCHHHHHHHHHh--CC--HHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088          254 NITAGNVNQIQAIIEA--GI--IGPLVNLLLNAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       254 nl~~~~~~~~~~l~~~--~~--i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      |++.. ++.++.+++.  +.  +..|+.++.+.+..-|.-++.+|.|++...
T Consensus        84 NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~  134 (192)
T PF04063_consen   84 NLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT  134 (192)
T ss_pred             HhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH
Confidence            99987 7888888863  33  778888888887666778999999999864

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.39  E-value=0.37  Score=34.82  Aligned_cols=77  Identities=10%  Similarity=0.086  Sum_probs=58.5

Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHH
Q 014088          229 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF  308 (431)
Q Consensus       229 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  308 (431)
                      +...+.-+.++ ...+|..++..|.++.....  ....-..+++..+...++++++-|-.+|+..|..++..........
T Consensus         5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~   81 (92)
T PF10363_consen    5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI   81 (92)
T ss_pred             HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence            45567777888 89999999999999998544  1222234577788888999999999999999999988664334333

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.31  E-value=2.8  Score=42.66  Aligned_cols=126  Identities=15%  Similarity=0.115  Sum_probs=78.6

Q ss_pred             HHHhhcCChHHHHHHhcccc-------hhhHHHHHHHHHHHhhcCCHHHHHHHHHh--------CCHHHHHHHHcc----
Q 014088          221 QCIINHQALPCLLDLLTQNY-------KKSIKKEACWTISNITAGNVNQIQAIIEA--------GIIGPLVNLLLN----  281 (431)
Q Consensus       221 ~~~~~~~~l~~L~~lL~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~--------~~i~~L~~ll~~----  281 (431)
                      ..+.+.+++..++++...+.       ..+....|+.+|.-+..- |+....+...        ..+..+++....    
T Consensus       595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i  673 (1516)
T KOG1832|consen  595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSI  673 (1516)
T ss_pred             HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence            34556778888888886543       244455566555554443 5555555432        123334333322    


Q ss_pred             CCHhHHHHHHHHHHHhcCCCC----------------------------------HHHHHHHHHCCChHHHHhhcCCCC-
Q 014088          282 AEFEIKKEAAWAISNATSGGS----------------------------------NEQIKFLVSQGCIKPLCDLLNCPD-  326 (431)
Q Consensus       282 ~~~~v~~~a~~aL~~l~~~~~----------------------------------~~~~~~l~~~~~l~~L~~ll~~~~-  326 (431)
                      .+++++..|+.+|.|+.....                                  ......+...+++..|+++++-+. 
T Consensus       674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P  753 (1516)
T KOG1832|consen  674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP  753 (1516)
T ss_pred             cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence            278999999999998876431                                  112223345688999999998654 


Q ss_pred             ----HHHHHHHHHHHHHHHHhhhhh
Q 014088          327 ----PRIVTVCLEGLENILKAGEAE  347 (431)
Q Consensus       327 ----~~v~~~al~~L~~l~~~~~~~  347 (431)
                          ..++..|+.+|.-+.+.....
T Consensus       754 ~t~aD~IRalAc~~L~GLaR~~tVr  778 (1516)
T KOG1832|consen  754 PTTADCIRALACRVLLGLARDDTVR  778 (1516)
T ss_pred             CCcHHHHHHHHHHHHhccccCcHHH
Confidence                368888999998888776643

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=93.18  E-value=5.2  Score=38.14  Aligned_cols=260  Identities=12%  Similarity=0.030  Sum_probs=139.0

Q ss_pred             HHHHHHHHHhhcCCCC--CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-
Q 014088          120 RNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-  196 (431)
Q Consensus       120 ~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-  196 (431)
                      ..+-..|..+....+.  ........++..|+.++++.|+.-|......+.++-........ .+...+...+.+++.. 
T Consensus       108 ~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~-~Ir~~i~~~~~~fi~e~  186 (409)
T PF01603_consen  108 QLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRS-FIRKSINNIFYRFIYET  186 (409)
T ss_dssp             HHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHH-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhcCc
Confidence            3455556666555422  22233467889999999999999999999999887654444433 3333555666677654 


Q ss_pred             CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHH
Q 014088          197 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV  276 (431)
Q Consensus       197 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~  276 (431)
                      ....-...++.+++.+..+...-...-...-....++.+.+.+.-......-..++..+...++.....++     ..++
T Consensus       187 ~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~ll  261 (409)
T PF01603_consen  187 ERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLL  261 (409)
T ss_dssp             S--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHH
T ss_pred             ccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHH
Confidence            55677888999999988763311111111111233444555553344455555666666554444333222     2233


Q ss_pred             HHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCc
Q 014088          277 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV  356 (431)
Q Consensus       277 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  356 (431)
                      +.=-..+..=...-+.-+..++....+.....+ ...+...+..++++.+.+|.+.|+..+.|=--..--.+        
T Consensus       262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--------  332 (409)
T PF01603_consen  262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--------  332 (409)
T ss_dssp             HHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--------
T ss_pred             HhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--------
Confidence            322233444334455666666665554444432 22356777888889999999998876443211000000        


Q ss_pred             chHHHHHHhhccHHHHHHh-hcCCCHHHHHHHHHHHHHhcCC
Q 014088          357 NLFAQAIDDAEGLEKIENL-QSHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       357 ~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~  397 (431)
                        ....+- --..+.|.+. .+|=|..++..|..++..+.+-
T Consensus       333 --~~~~i~-p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  333 --NSRVIL-PIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM  371 (409)
T ss_dssp             --THHHHH-HHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred             --ChHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence              011111 1123444443 3455888888888888776653

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.15  E-value=0.98  Score=37.99  Aligned_cols=100  Identities=15%  Similarity=0.069  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-----CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 014088          247 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL  321 (431)
Q Consensus       247 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l  321 (431)
                      .|+..|..++.+ |+.+..+++..+--.+...|...     ...+|..++.+++.+..++++...+.+....+++.+.++
T Consensus       119 naL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         119 NALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            344444455555 78787788877644455555432     356888999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088          322 LNCPDPRIVTVCLEGLENILKAGEAE  347 (431)
Q Consensus       322 l~~~~~~v~~~al~~L~~l~~~~~~~  347 (431)
                      ++..+.--+..+..++..++-++...
T Consensus       198 me~gSElSktvaifI~qkil~dDvGL  223 (315)
T COG5209         198 MELGSELSKTVAIFIFQKILGDDVGL  223 (315)
T ss_pred             HHhhhHHHHHHHHHHHHHHhccchhH
Confidence            99888777788888888887665543

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.97  E-value=1  Score=42.09  Aligned_cols=159  Identities=13%  Similarity=0.137  Sum_probs=88.3

Q ss_pred             HHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc------CCC
Q 014088           83 LGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SND  156 (431)
Q Consensus        83 L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~------~~~  156 (431)
                      +-+++....  ...+.+.+..+.+-+-+..+....-|+.|+..+..|++..+....   .-+...+..++.      +.+
T Consensus       194 ~Pnl~~~e~--D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~---~i~~~~i~~~l~~y~~~~~~~  268 (370)
T PF08506_consen  194 FPNLCLREE--DEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVT---SILMQYIQQLLQQYASNPSNN  268 (370)
T ss_dssp             HHHHS--HH--HHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-TTT-
T ss_pred             cCccCCCHH--HHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHhhCCccc
Confidence            445554322  245566666777777674444456677888899999875321111   112223333333      346


Q ss_pred             hHHHHHHHHHHHHhccCChH------------HHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh
Q 014088          157 DEVLTDACWALSYLSDGTND------------KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII  224 (431)
Q Consensus       157 ~~v~~~a~~~L~~l~~~~~~------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  224 (431)
                      ..-+..|+..++.++.....            ....+....++|.|. --.+..+-++..|++.+..+-..-+.  +.+ 
T Consensus       269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l-  344 (370)
T PF08506_consen  269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL-  344 (370)
T ss_dssp             HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH-
T ss_pred             HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH-
Confidence            77788899998888754421            122334444445444 11123455677788888777654321  112 


Q ss_pred             hcCChHHHHHHhcccchhhHHHHHHHHH
Q 014088          225 NHQALPCLLDLLTQNYKKSIKKEACWTI  252 (431)
Q Consensus       225 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L  252 (431)
                       .++++.++..|.++ +.-|+..|+.++
T Consensus       345 -~~~~~~l~~~L~~~-~~vv~tyAA~~i  370 (370)
T PF08506_consen  345 -LQIFPLLVNHLQSS-SYVVHTYAAIAI  370 (370)
T ss_dssp             -HHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhCCC-CcchhhhhhhhC
Confidence             25899999999999 888998888764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.93  E-value=0.88  Score=37.13  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=79.0

Q ss_pred             CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh--hcCChHHHHHHhcccchhhHHHHHHHHHHHhhc---CC
Q 014088          185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GN  259 (431)
Q Consensus       185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~  259 (431)
                      .....+..+++++++.-|..++..+...+..++.  +.+.  -...+..++++++.+....+++.++.++..+..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4567788999999999999999999888876532  2222  225678889999887677888999999998775   45


Q ss_pred             HHHHHHHHHh---CCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088          260 VNQIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       260 ~~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      ++..+++...   ++++.++++++.  ......++.+|..+....
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH  145 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence            6656665543   235555555554  466677777777776543

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=92.92  E-value=0.94  Score=35.61  Aligned_cols=72  Identities=17%  Similarity=0.268  Sum_probs=59.6

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC------CCHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH------DNTEIYEKA  387 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~------~~~~v~~~a  387 (431)
                      .+..|..-++++++.++..|+..|-.++++++..           |+..+.+.++++.+..+...      .++.|+++.
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~-----------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~ki  107 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER-----------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKI  107 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence            4556667778889999999999999999998764           77888888889888888742      579999999


Q ss_pred             HHHHHHhcC
Q 014088          388 VKILETYWV  396 (431)
Q Consensus       388 ~~~l~~~~~  396 (431)
                      ..++..|-.
T Consensus       108 l~li~~W~~  116 (139)
T cd03567         108 IELLYSWTL  116 (139)
T ss_pred             HHHHHHHHH
Confidence            999987764

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=92.75  E-value=1.2  Score=32.19  Aligned_cols=71  Identities=15%  Similarity=0.121  Sum_probs=58.1

Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014088          104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  176 (431)
Q Consensus       104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  176 (431)
                      ...+..+ +++.+.+|..++..|..+..... ........++..+...++++++-+--+|+.++..++...+.
T Consensus         6 ~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    6 QEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            3455566 67889999999999999998865 34444578888999999999999999999999999877654

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.28  E-value=1.9  Score=35.15  Aligned_cols=113  Identities=21%  Similarity=0.135  Sum_probs=74.3

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH--cCChHHHHHHhccccchhHHHHHHHHHHHhhcCC---
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---  133 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---  133 (431)
                      ..+..+..+|+++++.-|-.++..+...+..++.  +.+.+  ...+..++..|++.....+++.++.++..+...-   
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3556778888998888888888888888866521  12212  2357888999977778888999999988887644   


Q ss_pred             CCCChhhH----hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014088          134 PQPLFEQT----RPALPALERLIHSNDDEVLTDACWALSYLSDGTN  175 (431)
Q Consensus       134 ~~~~~~~~----~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  175 (431)
                      +.-.....    ..+++.++++++.  ......++.+|..+....+
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence            22111122    3444455555554  5666777777777765444

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.09  E-value=1  Score=37.61  Aligned_cols=111  Identities=12%  Similarity=0.074  Sum_probs=71.7

Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHHHH-HhccCChHHHHHHHHhCcHHHHHHhcCC---------CCcccHHHHHHHHhHh
Q 014088          143 PALPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRH---------PSPSVLIPALRTVGNI  212 (431)
Q Consensus       143 ~~i~~L~~lL~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~ll~~---------~~~~v~~~a~~~l~~l  212 (431)
                      .....+++.+.+.....  ..+..|. .|-..+....+.+++.|++..|+.+|..         .+......+++|+..+
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34445666665543322  2222222 2233445667788888999999888743         2335677789999888


Q ss_pred             hcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhh
Q 014088          213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  256 (431)
Q Consensus       213 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  256 (431)
                      +.........+-..+.+..+...|.++ +..+|..++..|+.+|
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            876554444444678899999999888 8999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=92.08  E-value=1.1  Score=35.00  Aligned_cols=72  Identities=17%  Similarity=0.270  Sum_probs=58.7

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc---CCCHHHHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS---HDNTEIYEKAVKI  390 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~---~~~~~v~~~a~~~  390 (431)
                      ++..|..-++++++.++..|+..|-.++++++..           |+..+....++..+..+..   ..+++|++++..+
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~-----------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~l  106 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP-----------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALEL  106 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH-----------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence            4666667778889999999999999999988653           6777777778888888865   4689999999999


Q ss_pred             HHHhcC
Q 014088          391 LETYWV  396 (431)
Q Consensus       391 l~~~~~  396 (431)
                      +..+-.
T Consensus       107 l~~W~~  112 (133)
T cd03561         107 ILAWSE  112 (133)
T ss_pred             HHHHHH
Confidence            987655

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.01  E-value=14  Score=36.86  Aligned_cols=112  Identities=11%  Similarity=0.055  Sum_probs=78.0

Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHhhcC---CHHHHHHHHH--hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCH
Q 014088          229 LPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIE--AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN  303 (431)
Q Consensus       229 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  303 (431)
                      +..+.++|.+. ...+|-..+.+.+|+..+   +++.....-+  +..+..+.+-+.+..+-+|..|+..+..+..-+..
T Consensus       301 ~~~~~~LLdse-s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk  379 (1128)
T COG5098         301 YEHFDELLDSE-SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK  379 (1128)
T ss_pred             HHHHHHHhccc-chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence            56688889888 889999989999998863   2211111111  22455566666777899999999999998765432


Q ss_pred             HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088          304 EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  344 (431)
Q Consensus       304 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~  344 (431)
                      -..+   ...++....+.+.....-++..|...+..++...
T Consensus       380 ~~~~---r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H  417 (1128)
T COG5098         380 TVGR---RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH  417 (1128)
T ss_pred             ccch---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence            1111   2235666777888889999999999999987654

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=91.80  E-value=1.2  Score=35.16  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=54.9

Q ss_pred             hHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH-HHHhhcC---CCHHHHHHHHH
Q 014088          315 IKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSH---DNTEIYEKAVK  389 (431)
Q Consensus       315 l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~---~~~~v~~~a~~  389 (431)
                      +..|..-+. .+++.++..|+..|..++++++..           |...+...++++. +..+.+.   ...+|+.+...
T Consensus        40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~-----------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~  108 (141)
T cd03565          40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR-----------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLA  108 (141)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH-----------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHH
Confidence            444444444 468888899999999999998764           6777788888887 8877652   35699999999


Q ss_pred             HHHHhcCC
Q 014088          390 ILETYWVE  397 (431)
Q Consensus       390 ~l~~~~~~  397 (431)
                      ++..|-..
T Consensus       109 li~~W~~~  116 (141)
T cd03565         109 LIQAWADA  116 (141)
T ss_pred             HHHHHHHH
Confidence            99887653

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=91.74  E-value=12  Score=35.53  Aligned_cols=127  Identities=14%  Similarity=0.149  Sum_probs=91.6

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCC---hHhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhcCCChHH-
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGT---SENTRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNVAGDSPKC-   93 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~-   93 (431)
                      |....+.+-|..|+....+.+...   ...++.+.+.=+.+.+-++|.+       ++...+..++..|..+|+...-. 
T Consensus        19 L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAs   98 (698)
T KOG2611|consen   19 LLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELAS   98 (698)
T ss_pred             HhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhcc
Confidence            445566688899999999988743   2356668888788888888865       23455667778888888764311 


Q ss_pred             HHHHHHcCChHHHHHHhccccchh------HHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc
Q 014088           94 RDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH  153 (431)
Q Consensus        94 ~~~i~~~~~i~~l~~~l~~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~  153 (431)
                      ...++.  .|+.++..+....+++      +...+..+|..++...+........|.++.+.++-.
T Consensus        99 h~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~  162 (698)
T KOG2611|consen   99 HEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE  162 (698)
T ss_pred             CHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence            123332  5888999886555554      888899999999998766666677899999987755

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=91.49  E-value=2.1  Score=43.41  Aligned_cols=162  Identities=16%  Similarity=0.131  Sum_probs=90.0

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhcC----CC-----hHHHHHHHHcCChHHHHHHhc---cccchhHHHHHH
Q 014088           60 AVPIFVRLLSS----PTDDVREQAVWALGNVAG----DS-----PKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNAT  123 (431)
Q Consensus        60 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~----~~-----~~~~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~  123 (431)
                      .+..+..+++.    .++.++..|+-+++.+..    ..     ............++.+...+.   ...+.+-+..++
T Consensus       432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L  511 (618)
T PF01347_consen  432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL  511 (618)
T ss_dssp             HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence            34455555554    456677777777777642    21     000011122234566666664   334567777888


Q ss_pred             HHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC---ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CC
Q 014088          124 WTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PS  198 (431)
Q Consensus       124 ~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~  198 (431)
                      .+|+|+-..          ..++.+...+...   +..+|..|+++|..+....+....        +.+..++.+  .+
T Consensus       512 kaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~  573 (618)
T PF01347_consen  512 KALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTED  573 (618)
T ss_dssp             HHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-
T ss_pred             HHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCC
Confidence            899998543          5778888887765   678899999999988776665433        566677654  45


Q ss_pred             cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHH
Q 014088          199 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC  249 (431)
Q Consensus       199 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~  249 (431)
                      .++|..|+..|...   ++..       ..+..+...+....+..|.....
T Consensus       574 ~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~  614 (618)
T PF01347_consen  574 PEVRIAAYLILMRC---NPSP-------SVLQRIAQSLWNEPSNQVASFVY  614 (618)
T ss_dssp             HHHHHHHHHHHHHT------H-------HHHHHHHHHHTT-S-HHHHHHHH
T ss_pred             hhHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhCchHHHHHHHH
Confidence            66777776655432   2322       23556677776654555554433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.32  E-value=7.7  Score=32.38  Aligned_cols=76  Identities=20%  Similarity=0.285  Sum_probs=55.4

Q ss_pred             hhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 014088           10 CILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD   89 (431)
Q Consensus        10 ~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~   89 (431)
                      ++++..+++.++--++  +++..++..|+..+..+....--+     -...+|.++.+..++++.++..|...+..+...
T Consensus         3 s~l~Qryl~~Il~~~~--~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK   75 (187)
T PF12830_consen    3 SALVQRYLKNILELCL--SSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEK   75 (187)
T ss_pred             HHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence            3566666664444333  456799999999998877532111     123789999999999999999999999999866


Q ss_pred             ChH
Q 014088           90 SPK   92 (431)
Q Consensus        90 ~~~   92 (431)
                      .+.
T Consensus        76 ~~s   78 (187)
T PF12830_consen   76 HES   78 (187)
T ss_pred             hHH
Confidence            554

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=90.98  E-value=1.7  Score=49.72  Aligned_cols=202  Identities=13%  Similarity=0.142  Sum_probs=120.3

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 014088           55 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  134 (431)
Q Consensus        55 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  134 (431)
                      +.+.+.+..+...+..+.-.++..+...+++++..++...-..+....+..+..+. .+.-..+...+..-+..+....+
T Consensus       561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~  639 (2341)
T KOG0891|consen  561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSP  639 (2341)
T ss_pred             hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHH
Confidence            44456666677777778888999999999999987764322222222222222211 11112222222222222222111


Q ss_pred             CCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhh
Q 014088          135 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIV  213 (431)
Q Consensus       135 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~  213 (431)
                      ..........+..++..+.+.+..+...+..+++.|+...........+ ..++.+.+.+.. .+..-+..+.++++++.
T Consensus       640 ~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~  718 (2341)
T KOG0891|consen  640 VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE  718 (2341)
T ss_pred             HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence            1122233455667777778888888899999999998766544444444 555666655544 45566788999999998


Q ss_pred             cCChhhhHHHh-hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC
Q 014088          214 TGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  258 (431)
Q Consensus       214 ~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  258 (431)
                      ........... ...++..+.+.+.......+|.++...++++...
T Consensus       719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            76543222222 2245666777777776778889999998877664

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=90.98  E-value=13  Score=34.53  Aligned_cols=126  Identities=13%  Similarity=-0.004  Sum_probs=77.1

Q ss_pred             hhhhhhhhhhHHHHHhhhc------------cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-----
Q 014088            8 FECILISLFVDQFFFHCFF------------SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----   70 (431)
Q Consensus         8 ~~~g~~~~~v~~~lv~~L~------------~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----   70 (431)
                      -+.|+.|...+|.+-.+|.            ...+-.+...++.||+|+..++...++...+......+++.+..     
T Consensus        76 dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~  155 (532)
T KOG4464|consen   76 DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERN  155 (532)
T ss_pred             cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence            3456666666655444432            12334788999999999999999999999998888888776532     


Q ss_pred             CCHHHHHHHHHHHHHhcCCChHHH-HHHHHcCChHHHHHHhccc--------------cchhHHHHHHHHHHHhhcCC
Q 014088           71 PTDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQFNEH--------------AKLSMLRNATWTLSNFCRGK  133 (431)
Q Consensus        71 ~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~i~~l~~~l~~~--------------~~~~~~~~a~~~L~~l~~~~  133 (431)
                      -...+...=++.|.-+..-.+..| ..+.+.++++.+.+.+...              .+....-.++.++.|+..+.
T Consensus       156 ~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~  233 (532)
T KOG4464|consen  156 FPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS  233 (532)
T ss_pred             CCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence            112222233334444433233334 4556778888888888421              11233344666677777665

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.79  E-value=13  Score=40.22  Aligned_cols=269  Identities=12%  Similarity=0.111  Sum_probs=123.8

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc----C---CChHHHHHHHHHHHHhccCChHHHHHHHHhC
Q 014088          113 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----S---NDDEVLTDACWALSYLSDGTNDKIQAVIEAG  185 (431)
Q Consensus       113 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  185 (431)
                      .+..+++.....++.++.........   .+ .+.+.++++    .   ...++...+..+|.-++.+.=.....-.-.+
T Consensus       853 ~~~~evr~~sl~~l~silet~ge~ll---~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~  928 (1610)
T KOG1848|consen  853 SRGVEVRISSLEALVSILETVGEHLL---HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD  928 (1610)
T ss_pred             CccceeeHHHHHHHHHHHhccchhhc---cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence            44566777777777777765321111   11 333333333    2   2445666666666666544211111111125


Q ss_pred             cHHHHHHhcC-CCCcccHHHHHHHHhHhhcCChhhhHHH----hhcCChHHHHHHhcccchhhHHHHHHHHHH--HhhcC
Q 014088          186 VCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCI----INHQALPCLLDLLTQNYKKSIKKEACWTIS--NITAG  258 (431)
Q Consensus       186 ~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~----~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~--nl~~~  258 (431)
                      +++.+..+-+ ..|..+...|+..+++++..-...+...    -..+.++.+..  ..+ ...+..+++|.+-  +++..
T Consensus       929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~-~~~~l~e~lwi~ll~~L~~~ 1005 (1610)
T KOG1848|consen  929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMK-SKEILPEVLWIMLLVHLADL 1005 (1610)
T ss_pred             HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--ccc-chhhhhhHHHHHHHHHHHHH
Confidence            5666666653 4677888888888888864321101111    11223333333  222 3455556666432  33322


Q ss_pred             CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHH----HHH-HHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 014088          259 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA----AWA-ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  333 (431)
Q Consensus       259 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a----~~a-L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  333 (431)
                      ..+ -+.-+..|.++.+.+++.+....+..+|    +|- +.-+..... .+.  ..+-+.     +.++....+.....
T Consensus      1006 ~~d-sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~-~q~--~~ewng-----keiqkqwtet~~lt 1076 (1610)
T KOG1848|consen 1006 CED-SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQP-IQN--VSEWNG-----KEIQKQWTETSCLT 1076 (1610)
T ss_pred             hcc-chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhcccc-ccc--hhhhcc-----hhHhhhhhhhhhhh
Confidence            111 1233445666667776665543333221    111 111111100 000  000000     01122233455566


Q ss_pred             HHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 014088          334 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPL  404 (431)
Q Consensus       334 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~~~  404 (431)
                      +.+|.+++...-+.  +   ...|.|....++  .+.-+..+..+.++++.-.|.+.+++..-+=...++.
T Consensus      1077 isgIaklf~e~fk~--l---lnln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~l 1140 (1610)
T KOG1848|consen 1077 ISGIAKLFSENFKL--L---LNLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKL 1140 (1610)
T ss_pred             HHHHHHHHHHHHHH--H---HhcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccc
Confidence            77777776543221  1   011222222221  2455666678899999999999888765544443433

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=90.76  E-value=5.1  Score=30.60  Aligned_cols=74  Identities=14%  Similarity=0.310  Sum_probs=54.3

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHH-hhccHHHHHHhhc--------CCCHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID-DAEGLEKIENLQS--------HDNTEIY  384 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~~l~~--------~~~~~v~  384 (431)
                      +++.|..-|+.+++.|+.++|.+|..++..+...           |...+. ....+..+.+...        .++..||
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-----------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR  107 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-----------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVR  107 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-----------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHH
Confidence            5777888888888999999999999999877532           444333 3444555555533        2357899


Q ss_pred             HHHHHHHHHhcCCC
Q 014088          385 EKAVKILETYWVEE  398 (431)
Q Consensus       385 ~~a~~~l~~~~~~e  398 (431)
                      ..|..++..+|+++
T Consensus       108 ~~A~El~~~if~~~  121 (122)
T cd03572         108 EEAQELIKAIFSYS  121 (122)
T ss_pred             HHHHHHHHHHhccC
Confidence            99999999999876

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=90.76  E-value=7.2  Score=39.61  Aligned_cols=148  Identities=12%  Similarity=0.098  Sum_probs=83.5

Q ss_pred             chhHHHHHHHHHHHhhcCC-CC---------CChhhHhhhHHHHHHhhc----CCChHHHHHHHHHHHHhccCChHHHHH
Q 014088          115 KLSMLRNATWTLSNFCRGK-PQ---------PLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQA  180 (431)
Q Consensus       115 ~~~~~~~a~~~L~~l~~~~-~~---------~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~  180 (431)
                      ++.++..|+-+++.+.... ..         ........+++.+...+.    ..+.+-+..++.+|+|+...       
T Consensus       448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-------  520 (618)
T PF01347_consen  448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-------  520 (618)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-------
T ss_pred             ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-------
Confidence            4567777777777665432 11         111222445555555444    56778888999999998632       


Q ss_pred             HHHhCcHHHHHHhcCCC---CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHHHHHHHHHhh
Q 014088          181 VIEAGVCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNIT  256 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~  256 (431)
                          ..++.+..++...   ...+|..|++++..++...+...        .+.++.++.+. .+.++|..|..+|...-
T Consensus       521 ----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~~  588 (618)
T PF01347_consen  521 ----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRCN  588 (618)
T ss_dssp             ----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT-
T ss_pred             ----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhcC
Confidence                3456777777665   56788899999998876555333        35677777554 25678888876665531


Q ss_pred             cCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHH
Q 014088          257 AGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAA  291 (431)
Q Consensus       257 ~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~  291 (431)
                       .+..         .+..+...+..+ +..|..-+.
T Consensus       589 -P~~~---------~l~~i~~~l~~E~~~QV~sfv~  614 (618)
T PF01347_consen  589 -PSPS---------VLQRIAQSLWNEPSNQVASFVY  614 (618)
T ss_dssp             ---HH---------HHHHHHHHHTT-S-HHHHHHHH
T ss_pred             -CCHH---------HHHHHHHHHhhCchHHHHHHHH
Confidence             1122         344556666544 555554433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.71  E-value=21  Score=36.41  Aligned_cols=158  Identities=15%  Similarity=0.147  Sum_probs=75.8

Q ss_pred             cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh-hcCChHH----HHHH---hcccchhhHHHHHHHHHHHhhc
Q 014088          186 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPC----LLDL---LTQNYKKSIKKEACWTISNITA  257 (431)
Q Consensus       186 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~----L~~l---L~~~~~~~v~~~a~~~L~nl~~  257 (431)
                      .++.+++.|..++..+-..|+.++-.+-...+.....+. ...+.+.    +.++   ++.+ ...--.....++.++..
T Consensus       499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p-~~~EneylmKaImRii~  577 (960)
T KOG1992|consen  499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP-GKAENEYLMKAIMRIIS  577 (960)
T ss_pred             HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC-cccccHHHHHHHHHHHH
Confidence            567777777777777888888888776543332111122 1122221    2222   2222 22222333444444433


Q ss_pred             CCHHHHHHHHHhCCHHHHHHHH----ccC-CHhHH---HHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHH
Q 014088          258 GNVNQIQAIIEAGIIGPLVNLL----LNA-EFEIK---KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI  329 (431)
Q Consensus       258 ~~~~~~~~l~~~~~i~~L~~ll----~~~-~~~v~---~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  329 (431)
                      -.++........ ++..|.+++    +++ ++..-   -+++.++-+.+...++..... .+...++.+...+..+-.+.
T Consensus       578 i~~~~i~p~~~~-~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~-~e~aL~p~fq~Il~eDI~Ef  655 (960)
T KOG1992|consen  578 ILQSAIIPHAPE-LLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSS-LEEALFPVFQTILSEDIQEF  655 (960)
T ss_pred             hCHHhhhhhhhH-HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            223333222211 233333333    333 33222   334444444444444333333 33445666666776666677


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 014088          330 VTVCLEGLENILKAGEA  346 (431)
Q Consensus       330 ~~~al~~L~~l~~~~~~  346 (431)
                      .-.++..+..+++....
T Consensus       656 iPYvfQlla~lve~~~~  672 (960)
T KOG1992|consen  656 IPYVFQLLAVLVEHSSG  672 (960)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            77888888887776554

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=90.71  E-value=2.3  Score=31.06  Aligned_cols=69  Identities=22%  Similarity=0.262  Sum_probs=55.7

Q ss_pred             CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 014088          312 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL  391 (431)
Q Consensus       312 ~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l  391 (431)
                      ...+..|++-++.+.+.....++..+..+++....             ...+.+.|+.+-+.++....+++.+.....++
T Consensus        29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a-------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA-------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH-------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            44577777777777777888899999998887653             56788899999999998888899988888887


Q ss_pred             HH
Q 014088          392 ET  393 (431)
Q Consensus       392 ~~  393 (431)
                      +.
T Consensus        96 ~~   97 (98)
T PF14726_consen   96 DQ   97 (98)
T ss_pred             hc
Confidence            64

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=90.67  E-value=1.5  Score=34.33  Aligned_cols=77  Identities=16%  Similarity=0.254  Sum_probs=59.8

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC-C-HHHHHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-N-TEIYEKAVKIL  391 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~-~~v~~~a~~~l  391 (431)
                      ++..|..-++++++.++..|+..|..++++++..           |+..+.+..+++.|..+..++ + +.|++++..++
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~-----------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li  106 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK-----------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELI  106 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            3555666777899999999999999999997653           778888888999999886543 3 34999999999


Q ss_pred             HHhcCCCCCC
Q 014088          392 ETYWVEEDED  401 (431)
Q Consensus       392 ~~~~~~e~~~  401 (431)
                      ..+...-..+
T Consensus       107 ~~W~~~f~~~  116 (133)
T smart00288      107 QEWADAFKND  116 (133)
T ss_pred             HHHHHHHcCC
Confidence            8876644333

Unpublished observations. Domain of unknown function.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=90.38  E-value=1.9  Score=44.20  Aligned_cols=131  Identities=14%  Similarity=0.109  Sum_probs=89.5

Q ss_pred             hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088          241 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC  319 (431)
Q Consensus       241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~  319 (431)
                      .+.+|..+.-+++++|........     ..+|.+++-|+.. ...+|.+.+-+++.+|..-+     . .-...++.+.
T Consensus       944 ~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----a-m~d~YiP~I~ 1012 (1529)
T KOG0413|consen  944 SDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----A-MTDRYIPMIA 1012 (1529)
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----H-HHHHhhHHHH
Confidence            367788899999999975344332     3688899888765 67888888888888876321     1 1223689999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccH-HHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 014088          320 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL-EKIENLQSHDNTEIYEKAVKILETYWVEE  398 (431)
Q Consensus       320 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~l~~l~~~~~~~v~~~a~~~l~~~~~~e  398 (431)
                      ..|..+++-++..++-.|.++++.+--                 +..|.+ -+..--+-+.+++++..|.-.+......+
T Consensus      1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~~v-----------------Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFGIV-----------------KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHhhhhh-----------------hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999875421                 112211 11111144567788887777776655544


Q ss_pred             C
Q 014088          399 D  399 (431)
Q Consensus       399 ~  399 (431)
                      +
T Consensus      1076 ~ 1076 (1529)
T KOG0413|consen 1076 E 1076 (1529)
T ss_pred             C
Confidence            3

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=90.38  E-value=9.5  Score=31.83  Aligned_cols=145  Identities=15%  Similarity=0.094  Sum_probs=90.3

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  181 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  181 (431)
                      .++.+++.. .+++..++..|+.++..+.+..-...    ...+|.++.+..++++.++..|...+..+.+..+.....-
T Consensus         9 yl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~   83 (187)
T PF12830_consen    9 YLKNILELC-LSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR   83 (187)
T ss_pred             HHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            356677766 67789999999999999988752111    3589999999999999999999999999987665544322


Q ss_pred             HHhCcHHHHHHh---cCCCCc-cc---HHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc-------hhhHHHH
Q 014088          182 IEAGVCPRLVEL---LRHPSP-SV---LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-------KKSIKKE  247 (431)
Q Consensus       182 ~~~~~i~~L~~l---l~~~~~-~v---~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-------~~~v~~~  247 (431)
                      ...| +..-..+   +..+.. ..   ....+..+..+...+...+.     +++..+++.+....       ...-...
T Consensus        84 ~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~-----~Fl~~l~k~f~~~~~~~~~~~~~~~l~~  157 (187)
T PF12830_consen   84 YSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRR-----KFLKSLLKQFDFDLTKLSSESSPSDLDF  157 (187)
T ss_pred             HHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHH-----HHHHHHHHHHHhhccccccccchhHHHH
Confidence            2222 2322222   222211 11   45556666666665555555     33455666654431       2333455


Q ss_pred             HHHHHHHhhc
Q 014088          248 ACWTISNITA  257 (431)
Q Consensus       248 a~~~L~nl~~  257 (431)
                      ..++.-|++.
T Consensus       158 ~~Fla~nLA~  167 (187)
T PF12830_consen  158 LLFLAENLAT  167 (187)
T ss_pred             HHHHHHHHhc
Confidence            6666666665

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.26  E-value=32  Score=37.68  Aligned_cols=114  Identities=11%  Similarity=0.174  Sum_probs=73.2

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHH-
Q 014088          227 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-  305 (431)
Q Consensus       227 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-  305 (431)
                      +++|.|-.-|.+. +..+|..|...+|.+......... =-....+...+.-+.+.+.+||.+++....++..+..... 
T Consensus       259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence            7889999999888 999999999999998874222221 0112345556666667778888888777777665432100 


Q ss_pred             ----HH-----------------------------HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088          306 ----IK-----------------------------FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       306 ----~~-----------------------------~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~  343 (431)
                          ..                             .+... .+..+.+-+..+...|+..|+..|..+.++
T Consensus       337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence                00                             00011 233333344566788999999998888874

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=90.25  E-value=7.7  Score=30.58  Aligned_cols=73  Identities=19%  Similarity=0.320  Sum_probs=57.3

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHH---HHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTE---IYEKAVK  389 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~---v~~~a~~  389 (431)
                      ++..|..-++++++.++..|+..|..++++++..           |+..+....+++.+..+. .+....   |++++..
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~-----------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~  111 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR-----------FHREVASKEFLDELVKLIKSKKTDPETPVKEKILE  111 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH-----------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHH
Confidence            4566667777899999999999999999988653           677777788899999874 344444   8999999


Q ss_pred             HHHHhcCC
Q 014088          390 ILETYWVE  397 (431)
Q Consensus       390 ~l~~~~~~  397 (431)
                      ++..|-..
T Consensus       112 ll~~W~~~  119 (140)
T PF00790_consen  112 LLQEWAEA  119 (140)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876443

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.17  E-value=1.6  Score=36.83  Aligned_cols=121  Identities=13%  Similarity=0.219  Sum_probs=77.8

Q ss_pred             hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcC-CChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088           12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS   90 (431)
Q Consensus        12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   90 (431)
                      -+|.++-|++...=.++...-+|..++.+++.+.. ++......+....++|..+++++.+++.-+..++.++..+..++
T Consensus       141 hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dD  220 (315)
T COG5209         141 HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDD  220 (315)
T ss_pred             ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            34545444444343344455788999999999987 55677788888999999999999999888889999999888766


Q ss_pred             hHHHHHHH-------HcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 014088           91 PKCRDLVL-------SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  132 (431)
Q Consensus        91 ~~~~~~i~-------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  132 (431)
                      ...+....       -...+..++..+.+.....+...+.++...++..
T Consensus       221 vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         221 VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            43321111       1112222333333344455556666666655554

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=89.73  E-value=1.8  Score=34.32  Aligned_cols=73  Identities=11%  Similarity=0.093  Sum_probs=62.9

Q ss_pred             CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHh
Q 014088          271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~~  343 (431)
                      ++..|..-+.++++.++..|+..|-.+..+++......+.+..++..|..++.. .++.++..++..+......
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            456677778889999999999999999999998888888888999999999987 6889999999888877643

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.62  E-value=34  Score=38.57  Aligned_cols=222  Identities=14%  Similarity=0.052  Sum_probs=120.6

Q ss_pred             CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      ..+|..+..+..+++.++...++  ..++ +...+..++-+.+ .++..|..-..+++.+-+.....-..-.....+..+
T Consensus       887 ~~~p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~il  963 (2067)
T KOG1822|consen  887 NPNPKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSIL  963 (2067)
T ss_pred             cCChHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHH
Confidence            45667777777777776652111  1111 1334555555555 555555555556666543221111111112235556


Q ss_pred             HHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC---ChHHHHHHHHHHH------Hhc------
Q 014088          107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALS------YLS------  171 (431)
Q Consensus       107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~------~l~------  171 (431)
                      ..+-.++.++.++.-++.++..+...............+..+..++-+.   ..++...--+++.      .+.      
T Consensus       964 lal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpe 1043 (2067)
T KOG1822|consen  964 LALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPE 1043 (2067)
T ss_pred             HHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccc
Confidence            6666556667999999999999888763333445566666666666533   2333332222222      121      


Q ss_pred             -cCChH--HHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHH
Q 014088          172 -DGTND--KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA  248 (431)
Q Consensus       172 -~~~~~--~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  248 (431)
                       ..+..  ... -+....+-...-++.++++.+...++.++.++-...+....   -.-++..+..++... ..-.|...
T Consensus      1044 L~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~-~~i~r~~~ 1118 (2067)
T KOG1822|consen 1044 LGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSS-YLILRRAS 1118 (2067)
T ss_pred             cCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcch-hhhhhhhH
Confidence             11111  111 12222233333445677888999999999988766553211   124567788888777 56667777


Q ss_pred             HHHHHHhhc
Q 014088          249 CWTISNITA  257 (431)
Q Consensus       249 ~~~L~nl~~  257 (431)
                      ...+..+..
T Consensus      1119 ~~clrql~~ 1127 (2067)
T KOG1822|consen 1119 FSCLRQLVQ 1127 (2067)
T ss_pred             HhhhhHHhH
Confidence            777777765

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=88.86  E-value=12  Score=34.18  Aligned_cols=176  Identities=11%  Similarity=0.076  Sum_probs=100.3

Q ss_pred             CcccHHHHHHHHhHhhcCChhhhHHHhhc-----------CChHHHHHHhc------ccchhhHHHHHHHHHHHhhcCCH
Q 014088          198 SPSVLIPALRTVGNIVTGDDMQTQCIINH-----------QALPCLLDLLT------QNYKKSIKKEACWTISNITAGNV  260 (431)
Q Consensus       198 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----------~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~~  260 (431)
                      ...+|..|+.++..+...++..+..+++.           .....|+..|-      +. ++.-...|+.++..+...++
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~  129 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNP  129 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-H
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCH
Confidence            45788999999999999888766655521           11223555444      22 44445678889999998888


Q ss_pred             HHHHHHHHh------------CCHHHHHHHHcc-----CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHC-CChHHHHhhc
Q 014088          261 NQIQAIIEA------------GIIGPLVNLLLN-----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLL  322 (431)
Q Consensus       261 ~~~~~l~~~------------~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll  322 (431)
                      +.+..+..-            -.++.+..+|..     .+++++..-+..|+..+..+ +.....|+.. ..++.|++..
T Consensus       130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~-p~AV~~FL~~~s~l~~Li~~~  208 (312)
T PF04869_consen  130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFEC-PDAVNDFLSEGSNLQSLIEFS  208 (312)
T ss_dssp             HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHH
T ss_pred             HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCC-HHHHHHHHcCcchHHHHHHHh
Confidence            876665421            136666666644     26777777777777777654 4666666665 4688888875


Q ss_pred             C---CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHH-hhc---cHHHHHHhhcCC
Q 014088          323 N---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID-DAE---GLEKIENLQSHD  379 (431)
Q Consensus       323 ~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~~l~~l~~~~  379 (431)
                      .   ..+.-++-.+.-.|+-..+...+..+    .....+...|. +.|   .+.+|.++.+++
T Consensus       209 ~~~~~~~~~VqGL~A~LLGicyef~~~~s~----~~R~~l~~ll~~riG~d~y~~kl~~lr~~~  268 (312)
T PF04869_consen  209 NQSSSEDVLVQGLCAFLLGICYEFSTKDSP----IPRATLHPLLTKRIGRDNYFSKLEQLRKSP  268 (312)
T ss_dssp             S--TCCCHHHHHHHHHHHHHHHHT-S-SCC----C-HHHHHHHHHHHT-HHHHHHHHHCCCCST
T ss_pred             hcCCCCcchHHHHHHHHHHHHHHhcCCCCC----cCHHHHHHHHHHhcCHHHHHHHHHHHhcCh
Confidence            3   23455555555666666665543322    11223455553 333   455555554444

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=88.82  E-value=7.7  Score=30.27  Aligned_cols=75  Identities=8%  Similarity=-0.025  Sum_probs=62.2

Q ss_pred             CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhhh
Q 014088          271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~al~~L~~l~~~~~  345 (431)
                      ++..|..-+.++++.++..|+..|-.+..++++.....+....++..|..++..   .++.++..++..+........
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            456677788889999999999999999999987777777777888889998875   477899999999988876543

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=88.75  E-value=14  Score=33.81  Aligned_cols=180  Identities=14%  Similarity=0.129  Sum_probs=104.2

Q ss_pred             cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc----c----chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCH
Q 014088          201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----N----YKKSIKKEACWTISNITAGNVNQIQAIIEAGII  272 (431)
Q Consensus       201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i  272 (431)
                      ++...++.+..+....+...  .+....++.+++.+-.    .    .++++..-....+..+-....+....+.+. ++
T Consensus        43 iKkeIL~Li~t~i~~~~~~~--~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-vf  119 (319)
T PF08767_consen   43 IKKEILKLIETFISKAEDPE--EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-VF  119 (319)
T ss_dssp             HHHHHHHHHHHHHHT-S-HH--HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-HH
Confidence            56667777777766544222  2334667777664321    1    134444444444444433223334445443 67


Q ss_pred             HHHHHHHccC---CHhHHHHHHHHHHHhcCCCC-------HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088          273 GPLVNLLLNA---EFEIKKEAAWAISNATSGGS-------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  342 (431)
Q Consensus       273 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~  342 (431)
                      ...+.++..+   -|+.|..-...|..+....-       +++.+     .+++.+.-.+++.+.++...++.++..++.
T Consensus       120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~-----~~idsi~wg~kh~~~~I~~~~L~~l~~ll~  194 (319)
T PF08767_consen  120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK-----LVIDSIVWGFKHTNREISETGLNILLELLN  194 (319)
T ss_dssp             HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            7788888764   57888887777777765431       12222     246666677788999999999999999998


Q ss_pred             hhhhhhhcCCCCCcchHHHHHHhhccHHHHHH----hhcCCCHHHHHHHHHHHHHhcC
Q 014088          343 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN----LQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~----l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      .......        .+...+-+...++.+..    +..+.+....+.-..+|..+|.
T Consensus       195 ~~~~~~~--------~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~  244 (319)
T PF08767_consen  195 NVSKTNP--------EFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR  244 (319)
T ss_dssp             HHHH-SH--------HHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred             HHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence            7776111        13444444444444444    3455555556666677887774

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=88.67  E-value=15  Score=35.20  Aligned_cols=239  Identities=10%  Similarity=0.102  Sum_probs=104.5

Q ss_pred             CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcC----CChHHHHHHHHcCCh
Q 014088           29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAG----DSPKCRDLVLSNGAL  103 (431)
Q Consensus        29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~----~~~~~~~~i~~~~~i  103 (431)
                      +++-+.....+++.-+-..-.+....+++ ..+..+....++ .++..-+....+++.+.+    .+++. -.-++...+
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~-v~~~E~~L~  119 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEA-VSQFEEALF  119 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhH-HHHHHHHHH
Confidence            44334444444433333332333333332 234444444455 457666666666666643    22221 112344467


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCChhhHhhhHHHHHHh-hcCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014088          104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAV  181 (431)
Q Consensus       104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  181 (431)
                      +.+...| +..-.+..-++..+|+.|.+..+ .........++|.++.- +-.....+ -...+.|.......+...   
T Consensus       120 P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i---  194 (435)
T PF03378_consen  120 PPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI---  194 (435)
T ss_dssp             HHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---
Confidence            7777778 44446778888888888887665 22222334555544422 22111111 223333333332222221   


Q ss_pred             HHhC----cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh-hHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhh
Q 014088          182 IEAG----VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  256 (431)
Q Consensus       182 ~~~~----~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  256 (431)
                      ...+    ++..+-+++.+..  .-..+...|..+...-+.. .+..+. .++..++.-|++...++..+..+..++.++
T Consensus       195 ~~~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~~  271 (435)
T PF03378_consen  195 VANNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLFA  271 (435)
T ss_dssp             ---S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHHH
Confidence            1112    2222333444433  2245667777776544421 121111 344555555555545666666666666655


Q ss_pred             c-CCHHHHHHHHH---hCCHHHHHH
Q 014088          257 A-GNVNQIQAIIE---AGIIGPLVN  277 (431)
Q Consensus       257 ~-~~~~~~~~l~~---~~~i~~L~~  277 (431)
                      . .+++.....++   .|+...++.
T Consensus       272 ~~~g~~~li~~id~IQ~glF~~il~  296 (435)
T PF03378_consen  272 IKYGPDFLIQTIDSIQPGLFGMILE  296 (435)
T ss_dssp             HHH-HHHHHHHHHTTSTTHHHHHHH
T ss_pred             HHcCHHHHHHHHHHhcCCcHHHHHH
Confidence            4 33444444433   344444443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=88.65  E-value=29  Score=34.94  Aligned_cols=134  Identities=16%  Similarity=0.125  Sum_probs=79.2

Q ss_pred             hHHHHHHhcc---ccchhHHHHHHHHHHHhhcCC----CCCChhhHhhhHHHHHHhhc----CCChHHHHHHHHHHHHhc
Q 014088          103 LMPLLAQFNE---HAKLSMLRNATWTLSNFCRGK----PQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLS  171 (431)
Q Consensus       103 i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~~l~  171 (431)
                      +..+..++..   ..++.++..|.-+++.+....    +.........+++.+...|.    ..+.+.+...+.+|+|+.
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  474 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG  474 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence            4455556532   234566677777777666422    11112223456666665554    456667788899999886


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhcC-C--CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHH
Q 014088          172 DGTNDKIQAVIEAGVCPRLVELLR-H--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKE  247 (431)
Q Consensus       172 ~~~~~~~~~~~~~~~i~~L~~ll~-~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~  247 (431)
                      ...           .+..+..++. .  .+..+|..|+++|..++...+...        -+.+++++.+. .+.++|..
T Consensus       475 ~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRia  535 (574)
T smart00638      475 HPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRMA  535 (574)
T ss_pred             Chh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHHH
Confidence            532           2233444443 2  345688999999998876444332        35566666543 36788888


Q ss_pred             HHHHHHHh
Q 014088          248 ACWTISNI  255 (431)
Q Consensus       248 a~~~L~nl  255 (431)
                      |+..|...
T Consensus       536 A~~~lm~t  543 (574)
T smart00638      536 AVLVLMET  543 (574)
T ss_pred             HHHHHHhc
Confidence            87666544

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=88.35  E-value=5  Score=35.75  Aligned_cols=146  Identities=19%  Similarity=0.163  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHcCCChHhHHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcC--Ch
Q 014088           32 AVQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLS----SPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--AL  103 (431)
Q Consensus        32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i  103 (431)
                      +-+.-++-.++-++. .+.....+...+  +...+..++.    +..+..+.-++++++|+...... +..+....  .+
T Consensus        78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i  155 (268)
T PF08324_consen   78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG-RQLLLSHFDSSI  155 (268)
T ss_dssp             CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCH
T ss_pred             ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-HHHHHhcccchH
Confidence            445555555555554 344444444332  2444444443    25688889999999999876654 45544422  23


Q ss_pred             HHHHHHhcccc---chhHHHHHHHHHHHhhcCC-CCC-ChhhHhhhHHHHHHhhc--CCChHHHHHHHHHHHHhccCChH
Q 014088          104 MPLLAQFNEHA---KLSMLRNATWTLSNFCRGK-PQP-LFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTND  176 (431)
Q Consensus       104 ~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~  176 (431)
                      ...+..+..+.   +..++..++.++.|++... ... .......++..+.+.+.  ..+++....++-+++++...++.
T Consensus       156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS  235 (268)
T ss_dssp             HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence            33333332332   7888889999999998643 111 22223346667777433  25899999999999999976654


Q ss_pred             HHH
Q 014088          177 KIQ  179 (431)
Q Consensus       177 ~~~  179 (431)
                      ...
T Consensus       236 ~~~  238 (268)
T PF08324_consen  236 AKQ  238 (268)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=88.26  E-value=3.4  Score=39.29  Aligned_cols=112  Identities=15%  Similarity=0.208  Sum_probs=66.0

Q ss_pred             CChHHHHHHhcccc---hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHH----HHHHHHhcC
Q 014088          227 QALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA----AWAISNATS  299 (431)
Q Consensus       227 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a----~~aL~~l~~  299 (431)
                      .+-..|..+|....   ++.+|...+.+|.-|--.+.     +.-..++..+..++..++...|.-+    ...|.|+-.
T Consensus        16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~-----i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~   90 (616)
T KOG2229|consen   16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNL-----IVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK   90 (616)
T ss_pred             hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCc-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence            34455666665432   57888888888776643211     1122356678888888877776544    444444433


Q ss_pred             CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 014088          300 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE  347 (431)
Q Consensus       300 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~  347 (431)
                      .+..+..    ...+-..+++++...++.-...++..++-+.+..-+.
T Consensus        91 ~~kn~kl----nkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~  134 (616)
T KOG2229|consen   91 KHKNDKL----NKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN  134 (616)
T ss_pred             hcccchH----HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc
Confidence            2211111    1122345677888777766677788888777765543

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=88.20  E-value=17  Score=32.23  Aligned_cols=175  Identities=15%  Similarity=0.112  Sum_probs=96.0

Q ss_pred             HHHHhhhccCCChHHHHHHHHHHHHHcCCC-------hHhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhc
Q 014088           19 QFFFHCFFSCCFGAVQFEAAWALTNIASGT-------SENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVA   87 (431)
Q Consensus        19 ~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~~l~   87 (431)
                      +.+++-|.++..   ...++..|..++...       .+.|-.+.=.+.+|.++.-+.++.    ......++..|..+|
T Consensus        67 ~Ll~KGL~Ss~t---~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a  143 (262)
T PF14225_consen   67 PLLLKGLRSSST---YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA  143 (262)
T ss_pred             HHHhCccCCCCc---HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence            344456665544   455555666555421       112322222346677777776655    234455667777777


Q ss_pred             CCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHHHHH
Q 014088           88 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA  166 (431)
Q Consensus        88 ~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  166 (431)
                      ....        ...+..++....+..-.+.......++..++... |.    .....+..++.+|.++-+-++..++.+
T Consensus       144 ~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~i  211 (262)
T PF14225_consen  144 EAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD----HEFQILTFLLGLLENGPPWLRRKTLQI  211 (262)
T ss_pred             HhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            4321        1234444444433222222222333333333321 11    223567778899998889999999999


Q ss_pred             HHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhh
Q 014088          167 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  213 (431)
Q Consensus       167 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~  213 (431)
                      |..+....+-...  ...+++..+.++++.+-   -..|+.++-...
T Consensus       212 L~~ll~~~d~~~~--~~~dlispllrlL~t~~---~~eAL~VLd~~v  253 (262)
T PF14225_consen  212 LKVLLPHVDMRSP--HGADLISPLLRLLQTDL---WMEALEVLDEIV  253 (262)
T ss_pred             HHHHhccccCCCC--cchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence            9988866543322  44467888888887764   445555555444

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=88.14  E-value=8.4  Score=29.45  Aligned_cols=87  Identities=17%  Similarity=0.211  Sum_probs=57.3

Q ss_pred             HHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHH-CCChHHHHhhcCCCC---
Q 014088          251 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPD---  326 (431)
Q Consensus       251 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~---  326 (431)
                      =|.+++..++.....+     +..|.+-|++.++.|+..++.+|..++..+.+.....+.. ...|..+.++-..+|   
T Consensus        24 Eia~~t~~s~~~~~ei-----~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~   98 (122)
T cd03572          24 EIAKLTRKSVGSCQEL-----LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK   98 (122)
T ss_pred             HHHHHHHcCHHHHHHH-----HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence            3455555555544444     4568888888899999999999999999988766666554 334555555544332   


Q ss_pred             -----HHHHHHHHHHHHHHHH
Q 014088          327 -----PRIVTVCLEGLENILK  342 (431)
Q Consensus       327 -----~~v~~~al~~L~~l~~  342 (431)
                           ..|+..|-+++.-++.
T Consensus        99 Gd~~~~~VR~~A~El~~~if~  119 (122)
T cd03572          99 GDSLNEKVREEAQELIKAIFS  119 (122)
T ss_pred             CcchhHHHHHHHHHHHHHHhc
Confidence                 2466666666665543

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=87.84  E-value=4.2  Score=32.15  Aligned_cols=75  Identities=13%  Similarity=0.051  Sum_probs=62.9

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  133 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  133 (431)
                      .++..|.+-|+++++.++..|+..|-.+.... ..+...+...+++..+.+++....++.++..++.++..-+...
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            46788888889999999999999999988763 5577788888899999999966778899999999888877653

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=87.73  E-value=58  Score=37.38  Aligned_cols=202  Identities=12%  Similarity=0.112  Sum_probs=110.0

Q ss_pred             ccchhHHHHHHHHHHHhhcCC-CCC---ChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 014088          113 HAKLSMLRNATWTLSNFCRGK-PQP---LFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC  187 (431)
Q Consensus       113 ~~~~~~~~~a~~~L~~l~~~~-~~~---~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  187 (431)
                      +++..+...|+..|..++... +..   .......++..+..++. +.+.+++..++.|+.++.......+    +. +-
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nI----kS-GW 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNV----KS-GW 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh----hc-Cc
Confidence            345677788888888877643 211   12223466777777666 4578999999999999876544332    22 33


Q ss_pred             HHHHHhc----CCCCcccHHHHHHHHhHhhcCChhhh-----HHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-
Q 014088          188 PRLVELL----RHPSPSVLIPALRTVGNIVTGDDMQT-----QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-  257 (431)
Q Consensus       188 ~~L~~ll----~~~~~~v~~~a~~~l~~l~~~~~~~~-----~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-  257 (431)
                      +.+..++    ....+.+...+..++..++...-...     ..+.  .++..+.+......+.++-..|+..|.+++. 
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            4444444    34567788888888877664211100     1111  3455555555444334455555555554421 


Q ss_pred             ---CCH-----------------------HHHHH-----HHHhCCHHHHH---HHHccCCHhHHHHHHHHHHHhcCCC--
Q 014088          258 ---GNV-----------------------NQIQA-----IIEAGIIGPLV---NLLLNAEFEIKKEAAWAISNATSGG--  301 (431)
Q Consensus       258 ---~~~-----------------------~~~~~-----l~~~~~i~~L~---~ll~~~~~~v~~~a~~aL~~l~~~~--  301 (431)
                         +..                       +....     ......+|.|.   ++..+...+||..|+.+|-.+....  
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence               000                       00000     00112233333   3456678999999999998887533  


Q ss_pred             --CHHHHHHHHHCCChHHHHhhc
Q 014088          302 --SNEQIKFLVSQGCIKPLCDLL  322 (431)
Q Consensus       302 --~~~~~~~l~~~~~l~~L~~ll  322 (431)
                        +++....+.. +++-++++-+
T Consensus      1381 ~Fs~~~W~~if~-~VLFPIFd~l 1402 (1780)
T PLN03076       1381 LFSLPLWERVFE-SVLFPIFDYV 1402 (1780)
T ss_pred             cCCHHHHHHHHH-HHHHHHHHHH
Confidence              2334444333 4566665544

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=87.63  E-value=33  Score=34.48  Aligned_cols=162  Identities=19%  Similarity=0.208  Sum_probs=94.7

Q ss_pred             hhHHHHHHhhcCC----ChHHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhc----CCCCcccHHHHHHHHh
Q 014088          143 PALPALERLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL----RHPSPSVLIPALRTVG  210 (431)
Q Consensus       143 ~~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~l~  210 (431)
                      ..+..+..++.++    .+.++..++.+++.+..    +.+.... .+...+++.+...|    ...+...+...+++|+
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            4566667777643    55677788888877663    2211101 11123455555544    3345556777899999


Q ss_pred             HhhcCChhhhHHHhhcCChHHHHHHhc--ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhH
Q 014088          211 NIVTGDDMQTQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEI  286 (431)
Q Consensus       211 ~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v  286 (431)
                      |+....           .++.+...+.  ......+|..|+|+|.+++...++..        -+.+++++.+.  ++++
T Consensus       472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~Ev  532 (574)
T smart00638      472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEV  532 (574)
T ss_pred             ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHH
Confidence            986522           2334444443  22257899999999999986545433        34566666654  7889


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHH
Q 014088          287 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLE  335 (431)
Q Consensus       287 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~  335 (431)
                      |..|+.+|...  +.+...         +..+...+. .++.++...+..
T Consensus       533 RiaA~~~lm~t--~P~~~~---------l~~ia~~l~~E~~~QV~sfv~S  571 (574)
T smart00638      533 RMAAVLVLMET--KPSVAL---------LQRIAELLNKEPNLQVASFVYS  571 (574)
T ss_pred             HHHHHHHHHhc--CCCHHH---------HHHHHHHHhhcCcHHHHHHhHH
Confidence            98888777654  233233         444444554 445666655443

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=87.13  E-value=7  Score=35.12  Aligned_cols=131  Identities=10%  Similarity=0.093  Sum_probs=70.8

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhH-HHHHhCCChHHHHHhh----C--------CCCHHHHHHHHHHHHHhcCC--
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENT-RVVIDHGAVPIFVRLL----S--------SPTDDVREQAVWALGNVAGD--   89 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~lL----~--------~~~~~v~~~a~~~L~~l~~~--   89 (431)
                      |.++.++.++..++.+|..+....+... ..+.+.|..+.+-..+    .        ..+..+...+.-++..++.-  
T Consensus       127 llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~  206 (282)
T PF10521_consen  127 LLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQE  206 (282)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhc
Confidence            3445578999999999999987443332 3466677665544433    2        24456677777777777421  


Q ss_pred             --ChHHHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC
Q 014088           90 --SPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN  155 (431)
Q Consensus        90 --~~~~~~~i~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~  155 (431)
                        ....+......-.-+.++.-+....   .+.++...+..+..+...-........+.+++.+.+.+.++
T Consensus       207 ~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  207 NDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             cCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence              1111111111111111333332222   36666666666666665533333344566777777766654

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=86.84  E-value=6.3  Score=35.41  Aligned_cols=69  Identities=17%  Similarity=0.116  Sum_probs=47.1

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC--hhhHhhhHH----HHHHhhc--------CCChHHHHHHHHHH
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL--FEQTRPALP----ALERLIH--------SNDDEVLTDACWAL  167 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~i~----~L~~lL~--------~~~~~v~~~a~~~L  167 (431)
                      .+++++.++ ++.+++++..++.+|..+....+...  .....|..+    .+..++.        .....+...+..++
T Consensus       120 iiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            588899999 77799999999999999998764444  122233333    3444444        33456777777777


Q ss_pred             HHhc
Q 014088          168 SYLS  171 (431)
Q Consensus       168 ~~l~  171 (431)
                      ..+.
T Consensus       199 ~~L~  202 (282)
T PF10521_consen  199 LSLL  202 (282)
T ss_pred             HHHH
Confidence            7774

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=86.67  E-value=2.4  Score=36.33  Aligned_cols=79  Identities=24%  Similarity=0.263  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHcCCChHhHHHHHhCC-------ChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChH-HHHHHHHcCC
Q 014088           32 AVQFEAAWALTNIASGTSENTRVVIDHG-------AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK-CRDLVLSNGA  102 (431)
Q Consensus        32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g-------~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~~~  102 (431)
                      .-|..|+.+|++++- .+.+-+.+...+       ++..|..++.. .++..|+.|+-.|.+++..... .|....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            568999999999986 344444444433       44556666655 7899999999999999976654 4566777889


Q ss_pred             hHHHHHHhc
Q 014088          103 LMPLLAQFN  111 (431)
Q Consensus       103 i~~l~~~l~  111 (431)
                      +..|+..+.
T Consensus       218 i~~Li~FiE  226 (257)
T PF12031_consen  218 ISHLIAFIE  226 (257)
T ss_pred             HHHHHHHHH
Confidence            999999994

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=86.49  E-value=10  Score=37.23  Aligned_cols=173  Identities=14%  Similarity=0.042  Sum_probs=101.2

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-----------CCChHHHHHHHHHHHHhccCChHHHHHH
Q 014088          113 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-----------SNDDEVLTDACWALSYLSDGTNDKIQAV  181 (431)
Q Consensus       113 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~  181 (431)
                      +++.++...|-..|..+...      .....++..|..+..           ..++.++..++..|..-....      -
T Consensus       248 d~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~  315 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------T  315 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------h
Confidence            34566666677677666554      122456666666554           236677777777775421110      0


Q ss_pred             HHhCcHHHHHHhcCCC--CcccHHHHHHHH---hHhhcCChhhhH----HHhhcCChHHHHH----HhcccchhhHHHHH
Q 014088          182 IEAGVCPRLVELLRHP--SPSVLIPALRTV---GNIVTGDDMQTQ----CIINHQALPCLLD----LLTQNYKKSIKKEA  248 (431)
Q Consensus       182 ~~~~~i~~L~~ll~~~--~~~v~~~a~~~l---~~l~~~~~~~~~----~~~~~~~l~~L~~----lL~~~~~~~v~~~a  248 (431)
                      .....++.+..-+.+.  +..++..++..+   ...........-    ..+..++.+.+-.    --... +...|..+
T Consensus       316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~-~~~lR~~a  394 (501)
T PF13001_consen  316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSE-DIELRSLA  394 (501)
T ss_pred             CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcc-cHHHHHHH
Confidence            0112334444445554  566777777777   544443332222    2233344444410    01123 67899999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCC
Q 014088          249 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  300 (431)
Q Consensus       249 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  300 (431)
                      ..+||.++...+....  -+-+++..|.+-|..+.++++...-.+|..++..
T Consensus       395 Ye~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a  444 (501)
T PF13001_consen  395 YETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA  444 (501)
T ss_pred             HHHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence            9999999987665431  1245688899888888999999888888888653

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=86.39  E-value=3.9  Score=32.17  Aligned_cols=73  Identities=10%  Similarity=-0.001  Sum_probs=61.4

Q ss_pred             CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 014088          271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~al~~L~~l~~~  343 (431)
                      .+..+..-+.++++.++..|+..|-.+..++++.....+.+.+++..|+.++..      .+..++..++..+......
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  117 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE  117 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            456677788899999999999999999999988888888888999999998853      4678999999888877654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=86.03  E-value=9.8  Score=40.64  Aligned_cols=233  Identities=13%  Similarity=0.114  Sum_probs=129.9

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH-HHHHHHcCChHHHHHHh---------ccccchhHHHHHHHHHHH
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-RDLVLSNGALMPLLAQF---------NEHAKLSMLRNATWTLSN  128 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~L~~  128 (431)
                      +.++.|+..+-++.+++|+.+..++..+....... -....+. .+..++..+         ..+--..+++.++|+|..
T Consensus        77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led-~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~  155 (1549)
T KOG0392|consen   77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLED-LLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA  155 (1549)
T ss_pred             HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHH-HHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence            45677777777899999999998888887432110 0011111 111111111         011234788999999999


Q ss_pred             hhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHH
Q 014088          129 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  208 (431)
Q Consensus       129 l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~  208 (431)
                      +..+-   ........+..+.+++..++.+++...+..+.+......+....+. ..+++..+..|.+.+..++..|...
T Consensus       156 ~l~~~---~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ds~ddv~~~aa~~  231 (1549)
T KOG0392|consen  156 YLKHM---DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLEDSDDDVRSVAAQF  231 (1549)
T ss_pred             HHHhh---hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcchHHHHHHHHH
Confidence            88773   2233456677778888877777777666666543322112222111 1456667777888888899888888


Q ss_pred             HhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH----HHHHhhcCCHHHHHHH----HHhCCHHHHHHHHc
Q 014088          209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW----TISNITAGNVNQIQAI----IEAGIIGPLVNLLL  280 (431)
Q Consensus       209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~----~L~nl~~~~~~~~~~l----~~~~~i~~L~~ll~  280 (431)
                      +.-...........-+ ..++..+...+..- +.  ...+..    .+..++... +.....    .+.|++|.+...+.
T Consensus       232 l~~~~s~~v~l~~~~i-~~lv~~l~~~l~~l-dd--l~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~~Lvp~~~p~l~  306 (1549)
T KOG0392|consen  232 LVPAPSIQVKLMVQKI-AKLVHTLWSFLLEL-DD--LSSSTASIMHLLDELCIEN-EVLDLFEQQNLEVGLVPRLWPFLR  306 (1549)
T ss_pred             hhhhhHHHHhhhHhHH-HHHHHHHHHHHHHh-hh--cchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhhccchhhHHHHH
Confidence            7766543211111000 12233333333222 11  111111    222333321 111111    13578999999998


Q ss_pred             cCCHhHHHHHHHHHHHhcCCC
Q 014088          281 NAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       281 ~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      +.-..++..++..+..+.+..
T Consensus       307 ~~i~sv~~a~l~~l~~lle~~  327 (1549)
T KOG0392|consen  307 HTISSVRRAALETLAMLLEAD  327 (1549)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC
Confidence            887788899999998887754

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=86.00  E-value=1.6  Score=38.87  Aligned_cols=135  Identities=13%  Similarity=0.027  Sum_probs=75.9

Q ss_pred             CChHHHHHHHHHHHHhccCChHHHHHHHHh-C--cHHHHHHhcCCC---CcccHHHHHHHHhHhhcCChhhh-HHHhhcC
Q 014088          155 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-G--VCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQT-QCIINHQ  227 (431)
Q Consensus       155 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~--~i~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~  227 (431)
                      ..+..+.-+++++.|+..+...... +... +  ++..+.......   +..++..+...+.|++....... ..-....
T Consensus       122 ~~~~~~ml~lR~l~NlF~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~  200 (268)
T PF08324_consen  122 SPPANQMLALRLLANLFSHPPGRQL-LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE  200 (268)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCCCHHH-HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred             CcHHHHHHHHHHHHHhhCCCccHHH-HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            4677888999999999987665533 3322 2  222222222332   67788889999999875321111 0001112


Q ss_pred             ChHHHHH-HhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc-cCCHhHHHHH
Q 014088          228 ALPCLLD-LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEA  290 (431)
Q Consensus       228 ~l~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a  290 (431)
                      .+..+.+ +.....+++....++-++|++....+.........++-..+-..-. ..+++++..+
T Consensus       201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~  265 (268)
T PF08324_consen  201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA  265 (268)
T ss_dssp             HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence            4556666 3334347899999999999999765544433322333333322222 2345555443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=85.65  E-value=51  Score=34.65  Aligned_cols=103  Identities=18%  Similarity=0.228  Sum_probs=74.1

Q ss_pred             HHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088           19 QFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL   98 (431)
Q Consensus        19 ~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   98 (431)
                      |.|++-|..++...+|.+.+.+++.+|.+..     ..-...+|.+..-|.++++-+|++++-.|.+|....     .+.
T Consensus       971 P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~-----~vK 1040 (1529)
T KOG0413|consen  971 PMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG-----IVK 1040 (1529)
T ss_pred             HHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh-----hhh
Confidence            3444578878878888888888888886321     122357899999999999999999999999997432     222


Q ss_pred             HcC--ChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 014088           99 SNG--ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  133 (431)
Q Consensus        99 ~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  133 (431)
                      -.|  +++.++.++  +.+++++..|=.+++.+....
T Consensus      1041 w~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1041 WNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             cchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhc
Confidence            223  234444444  557889999999999988764

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=85.58  E-value=5.4  Score=30.14  Aligned_cols=72  Identities=18%  Similarity=0.272  Sum_probs=52.9

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh-----h-cCCCHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-----Q-SHDNTEIYEKA  387 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-----~-~~~~~~v~~~a  387 (431)
                      ++..|..-+..+++.+...++..|..+++++...           |...+.+..++..+..+     . ...+..|++++
T Consensus        38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~-----------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~  106 (115)
T cd00197          38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER-----------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKA  106 (115)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH-----------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHH
Confidence            4556666667789999999999999999988754           56666666655555332     1 34589999999


Q ss_pred             HHHHHHhcC
Q 014088          388 VKILETYWV  396 (431)
Q Consensus       388 ~~~l~~~~~  396 (431)
                      ..+++.+.+
T Consensus       107 ~~l~~~w~~  115 (115)
T cd00197         107 IELVQLWAS  115 (115)
T ss_pred             HHHHHHHhC
Confidence            999987653

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.35  E-value=33  Score=37.37  Aligned_cols=96  Identities=13%  Similarity=0.025  Sum_probs=56.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc------cccchhHHHHHHHHHHHhhcCC-CCCChhhHh
Q 014088           70 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN------EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTR  142 (431)
Q Consensus        70 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~------~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~  142 (431)
                      .+..+++...+.++.++.....+   .+.. | .+.+.+++.      .....++.+.+..+|.-++.+. +........
T Consensus       853 ~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~  927 (1610)
T KOG1848|consen  853 SRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL  927 (1610)
T ss_pred             CccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence            35567777777888887654322   1111 1 444444442      1124567778888888888877 666666677


Q ss_pred             hhHHHHHHhhcCC-ChHHHHHHHHHHHHh
Q 014088          143 PALPALERLIHSN-DDEVLTDACWALSYL  170 (431)
Q Consensus       143 ~~i~~L~~lL~~~-~~~v~~~a~~~L~~l  170 (431)
                      +++..+..+-+.. |..+--.|+..+.++
T Consensus       928 ~lidtl~~fs~QktdlNISltAi~lfWtv  956 (1610)
T KOG1848|consen  928 DLIDTLLVFSRQKTDLNISLTAIGLFWTV  956 (1610)
T ss_pred             HHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence            7888777766533 444444444444433

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=84.80  E-value=42  Score=33.04  Aligned_cols=220  Identities=16%  Similarity=0.066  Sum_probs=118.4

Q ss_pred             CCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC--C---------CCcccHHHHHHHHhHhhcCChhhhHH
Q 014088          154 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--H---------PSPSVLIPALRTVGNIVTGDDMQTQC  222 (431)
Q Consensus       154 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~---------~~~~v~~~a~~~l~~l~~~~~~~~~~  222 (431)
                      +++.+|...+-..|..+...-+       +..++..|+.+..  .         -++.++...+..|   +....   ..
T Consensus       248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L---~kS~~---Aa  314 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLL---SKSVI---AA  314 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHH---HHhHH---HH
Confidence            3455666667666766654421       1234555655544  1         2334444444444   33211   11


Q ss_pred             HhhcCChHHHHHHhccc-chhhHHHHHHHHH---HHhhcC-CHHHHH---HHHHhCCHHHHHH----HHccCCHhHHHHH
Q 014088          223 IINHQALPCLLDLLTQN-YKKSIKKEACWTI---SNITAG-NVNQIQ---AIIEAGIIGPLVN----LLLNAEFEIKKEA  290 (431)
Q Consensus       223 ~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L---~nl~~~-~~~~~~---~l~~~~~i~~L~~----ll~~~~~~v~~~a  290 (431)
                      ..-...+..+..-+.+. .+.++|..++..+   .....+ .+....   ..+..++.|.+-.    -....+...|..+
T Consensus       315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a  394 (501)
T PF13001_consen  315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA  394 (501)
T ss_pred             hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence            11112333333333332 1456676776666   555442 233333   3334455554410    0112367899999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHH
Q 014088          291 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE  370 (431)
Q Consensus       291 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  370 (431)
                      ..+|+.++.....-..   .+.+.+..|++-+..+.++++...-++|..++..-.....          ...........
T Consensus       395 Ye~lG~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~----------~~~~~~~~~~~  461 (501)
T PF13001_consen  395 YETLGLLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD----------DEDEQKRLLLE  461 (501)
T ss_pred             HHHHHHHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc----------chhHHHHHHHH
Confidence            9999999986632110   2345788898888888899998888888888765543221          00000011111


Q ss_pred             -HHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 014088          371 -KIENLQSHDNTEIYEKAVKILETYWVEED  399 (431)
Q Consensus       371 -~l~~l~~~~~~~v~~~a~~~l~~~~~~e~  399 (431)
                       .+.....+....+|..|.+-.+++|+.++
T Consensus       462 ~l~~~~~~~~~~~~R~~avk~an~~fpf~d  491 (501)
T PF13001_consen  462 LLLLSYIQSEVRSCRYAAVKYANACFPFSD  491 (501)
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHhCCccc
Confidence             12223446667788889999999998765

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=84.51  E-value=36  Score=32.01  Aligned_cols=219  Identities=15%  Similarity=0.163  Sum_probs=122.1

Q ss_pred             chhHHHHHHHHHHHhhcCCCCC---ChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 014088          115 KLSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  189 (431)
Q Consensus       115 ~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  189 (431)
                      +.++..+|+.+|+.+..+..-.   .......++...+..+.++  +..+....+++|..---...     ++....+..
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~-----~~~~~~~~~  133 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK-----IMTSDRVER  133 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc-----ccchhhHHH
Confidence            6788899999999998775211   1112233566666666543  56778888888864322211     222333444


Q ss_pred             HHHhc----C-CCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc--C-CHH
Q 014088          190 LVELL----R-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--G-NVN  261 (431)
Q Consensus       190 L~~ll----~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~-~~~  261 (431)
                      ++..+    + -++..+....+.++.++....+.....-.+ ..++.++..+-+. ...+|..|...+..+..  + +..
T Consensus       134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~  211 (372)
T PF12231_consen  134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKE  211 (372)
T ss_pred             HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHH
Confidence            44433    2 256678888999999998766644332222 3677777777777 67777776655554442  2 222


Q ss_pred             HHHHHH---H----hC-----CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC-HHHHHHHHHCCChHHHHhhcCCCCHH
Q 014088          262 QIQAII---E----AG-----IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPDPR  328 (431)
Q Consensus       262 ~~~~l~---~----~~-----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~  328 (431)
                      ....+.   +    .+     +.+.|..++..++......-+|...-+..... -+....+  +..+.....++++.++.
T Consensus       212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~~  289 (372)
T PF12231_consen  212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDPQ  289 (372)
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCHH
Confidence            222221   1    12     23335666666332222222333322222221 1222221  22466666788899999


Q ss_pred             HHHHHHHHHHHHHH
Q 014088          329 IVTVCLEGLENILK  342 (431)
Q Consensus       329 v~~~al~~L~~l~~  342 (431)
                      ++..|..+=..++.
T Consensus       290 ~k~~A~~aW~~liy  303 (372)
T PF12231_consen  290 VKIQAFKAWRRLIY  303 (372)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888777766

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=84.50  E-value=29  Score=37.98  Aligned_cols=147  Identities=12%  Similarity=0.015  Sum_probs=91.8

Q ss_pred             CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHH
Q 014088          101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA  180 (431)
Q Consensus       101 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  180 (431)
                      ++++.|..-| .+.+..+|..|...++.+..............++...+.-+.+.+.++|..++....+...+.+.....
T Consensus       259 ~vip~l~~eL-~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~  337 (1266)
T KOG1525|consen  259 AVIPQLEFEL-LSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA  337 (1266)
T ss_pred             HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence            4566777777 677899999999999999887533333334667777788888889999999999988876665543331


Q ss_pred             HHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088          181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  257 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  257 (431)
                      .   +....+-  ....++.++....-++..+... . ....++.. .+..+.+.+.+. ...||..|+..|..+-.
T Consensus       338 ~---~~~~~l~--~~~~D~~~rir~~v~i~~~~v~-~-~~l~~~~~-ll~~~~eR~rDK-k~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  338 S---TILLALR--ERDLDEDVRVRTQVVIVACDVM-K-FKLVYIPL-LLKLVAERLRDK-KIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             H---HHHHHHH--hhcCChhhhheeeEEEEEeehh-H-hhhhhhHH-HHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence            1   1222222  2334444444433322222110 1 11112222 666777777777 89999999988886643

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=83.51  E-value=3.8  Score=35.12  Aligned_cols=84  Identities=20%  Similarity=0.252  Sum_probs=61.4

Q ss_pred             ccHHHHHHHHhHhhcCChhhhHHHhhc-------CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHH-HHhCC
Q 014088          200 SVLIPALRTVGNIVTGDDMQTQCIINH-------QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEAGI  271 (431)
Q Consensus       200 ~v~~~a~~~l~~l~~~~~~~~~~~~~~-------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~~  271 (431)
                      +-++.++.++..++.... +...++..       .++..|.+++....+...|+.|+-.|.+++.++......+ .+.+.
T Consensus       139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            467889999999986533 22323221       4566777777777688999999999999999866666444 35778


Q ss_pred             HHHHHHHHccCCH
Q 014088          272 IGPLVNLLLNAEF  284 (431)
Q Consensus       272 i~~L~~ll~~~~~  284 (431)
                      +..|+.+++..+.
T Consensus       218 i~~Li~FiE~a~~  230 (257)
T PF12031_consen  218 ISHLIAFIEDAEQ  230 (257)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=83.38  E-value=9  Score=29.91  Aligned_cols=75  Identities=16%  Similarity=0.110  Sum_probs=59.5

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHcCChHHHHHHhccccchh-HHHHHHHHHHHhhcCC
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLS-MLRNATWTLSNFCRGK  133 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~-~~~~a~~~L~~l~~~~  133 (431)
                      .++..|.+-|+++++.++..|+..|-.+... .+.+...+....++..|..++....+.. ++..++.++..-+...
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            3677888888999999999999999999876 3557778888888999998886555444 8888888887776643

Unpublished observations. Domain of unknown function.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.83  E-value=60  Score=33.28  Aligned_cols=298  Identities=15%  Similarity=0.076  Sum_probs=151.2

Q ss_pred             hHHHHHHHHHHHHHcCCC--hHhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcCCCh---HHHHHHHHcCChH
Q 014088           31 GAVQFEAAWALTNIASGT--SENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSP---KCRDLVLSNGALM  104 (431)
Q Consensus        31 ~~~~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~---~~~~~i~~~~~i~  104 (431)
                      .-+|+..+|.++...+..  .+.+..     +=..++.+|++. +..++..+++++.-...+-.   +.-..+. .....
T Consensus       501 RiiRRRVa~ilg~Wvsvq~~~e~k~l-----~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~l-enlf~  574 (978)
T KOG1993|consen  501 RIIRRRVAWILGQWVSVQQKLELKPL-----LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYL-ENLFV  574 (978)
T ss_pred             hHHHHHHHHHHhhhhheechHhHHHH-----HHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhH-HHHHH
Confidence            357788899998877511  222222     235678888875 67778888888877664321   1111111 22334


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc--CCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088          105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVI  182 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  182 (431)
                      .+.+++..-...+.+-..+..++.+...-..........++..+-.+=+  .+.+-++...+.++.|+...-..... ..
T Consensus       575 ~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~-~~  653 (978)
T KOG1993|consen  575 LLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSF-EF  653 (978)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCc-cc
Confidence            4555554445566777788888777655311111122222222222222  23556777788888888754221111 11


Q ss_pred             HhCcHHHHHHhcCC-CCcc---cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-
Q 014088          183 EAGVCPRLVELLRH-PSPS---VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-  257 (431)
Q Consensus       183 ~~~~i~~L~~ll~~-~~~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-  257 (431)
                      . .++-.++++-.+ ++|+   ..+-+...........+.....+.  +++|.+..++... .+. ...+...+..-.- 
T Consensus       654 ~-~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~s-te~-L~t~l~Ii~sYilL  728 (978)
T KOG1993|consen  654 Y-PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQS-TEN-LPTVLMIISSYILL  728 (978)
T ss_pred             h-HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhh-hhh-HHHHHHHHHHHHhh
Confidence            1 222233333222 2222   223333333333332232222222  4567777777655 332 3334444443332 


Q ss_pred             CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc--CCCCHHHHHHHHH
Q 014088          258 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL--NCPDPRIVTVCLE  335 (431)
Q Consensus       258 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll--~~~~~~v~~~al~  335 (431)
                      .++... .....|+.+.+.+++.+-..+-....+.++..+....  +....+...++++.+..-+  +.+.|.+.-.-+.
T Consensus       729 d~~~fl-~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~--~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~  805 (978)
T KOG1993|consen  729 DNTVFL-NDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTN--PILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLL  805 (978)
T ss_pred             ccHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh--HHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHH
Confidence            333322 2223567888888887655555566666666666543  3455555667777766644  3445566555566


Q ss_pred             HHHHHHHh
Q 014088          336 GLENILKA  343 (431)
Q Consensus       336 ~L~~l~~~  343 (431)
                      +++++.-.
T Consensus       806 vvaRi~l~  813 (978)
T KOG1993|consen  806 VVARISLR  813 (978)
T ss_pred             HHHHHHhc
Confidence            65555443

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=82.55  E-value=26  Score=28.93  Aligned_cols=71  Identities=18%  Similarity=0.201  Sum_probs=53.8

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          227 QALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       227 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      ..++.+.+-|... +...+--|...+..+... ..+.+-.++.. ++..+...|++.++++...++.+|..++.
T Consensus        38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlPq-LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~  109 (183)
T PF10274_consen   38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLPQ-LIIPLKRALNTRDPEVFCATLKALQQLVT  109 (183)
T ss_pred             hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            5678888888877 677777777777777654 44544444443 77888888999999999999999999954

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes

Probab=82.26  E-value=25  Score=31.80  Aligned_cols=126  Identities=12%  Similarity=0.208  Sum_probs=88.5

Q ss_pred             HHhhcCChHHHHHHhcc----------------------cchhhHHHHHHHHHHHhhcCCHHHHHH--------------
Q 014088          222 CIINHQALPCLLDLLTQ----------------------NYKKSIKKEACWTISNITAGNVNQIQA--------------  265 (431)
Q Consensus       222 ~~~~~~~l~~L~~lL~~----------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~--------------  265 (431)
                      .+.+.|++|.|-++++.                      .++..+|.+-++.+.+++.........              
T Consensus         4 ~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~   83 (303)
T PF12463_consen    4 RLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELN   83 (303)
T ss_pred             HHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccccc
Confidence            45566777777776631                      002357888888888888732111100              


Q ss_pred             -------HHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCH-HHHHHHHHCCChHHHHhhcCCC---CHHHHHH
Q 014088          266 -------IIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN-EQIKFLVSQGCIKPLCDLLNCP---DPRIVTV  332 (431)
Q Consensus       266 -------l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~-~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~  332 (431)
                             --+.|.+..+++.+...  +...|..-+.++-.+.+..++ .....+.+.|+++.++..+-++   +.++.+.
T Consensus        84 ~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~  163 (303)
T PF12463_consen   84 SNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQS  163 (303)
T ss_pred             ccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHH
Confidence                   01356788888888654  677888999999999998876 4555777899999998876533   3468889


Q ss_pred             HHHHHHHHHHhhhhh
Q 014088          333 CLEGLENILKAGEAE  347 (431)
Q Consensus       333 al~~L~~l~~~~~~~  347 (431)
                      ....|+-+++.....
T Consensus       164 ~FDLLGELiK~n~~~  178 (303)
T PF12463_consen  164 NFDLLGELIKFNRDA  178 (303)
T ss_pred             HHHHHHHHHCCCHHH
Confidence            999999999987654

Proteins in this family are typically between 399 and 797 amino acids in length.

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []

Probab=82.16  E-value=13  Score=36.07  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=72.3

Q ss_pred             cCChHHHHHHhcccchhhHHHHHHHHHHHhh--cCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCC-
Q 014088          226 HQALPCLLDLLTQNYKKSIKKEACWTISNIT--AGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG-  301 (431)
Q Consensus       226 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~--~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~-  301 (431)
                      .++++.+++.+..+   .+-.-.++.++ .=  .......+-+.+.++++.|+++|... +..++.+|+.+|+.+.... 
T Consensus        20 ~~~v~~llkHI~~~---~ImDlLLklIs-~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~   95 (475)
T PF04499_consen   20 PNFVDNLLKHIDTP---AIMDLLLKLIS-TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR   95 (475)
T ss_pred             ccHHHHHHHhcCCc---HHHHHHHHHHc-cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            35566666666544   22222222222 10  12234455566789999999999744 7889999998888875432 


Q ss_pred             -----------CHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhh
Q 014088          302 -----------SNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       302 -----------~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~  345 (431)
                                 .......+.+...+..|++.+= .........++.++..+++...
T Consensus        96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknn  151 (475)
T PF04499_consen   96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNN  151 (475)
T ss_pred             ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc
Confidence                       1345566777778888887553 2335556677888888876553

This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=82.04  E-value=8.5  Score=35.67  Aligned_cols=209  Identities=16%  Similarity=0.060  Sum_probs=106.4

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC--CChHHHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG--DSPKCRDLV   97 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i   97 (431)
                      .+..++.+..++......+.++..-+..-    ..-+...++..+.+.+++..+.+|+.-+..++....  .+......+
T Consensus        26 ~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~  101 (339)
T PF12074_consen   26 GLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFA  101 (339)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHH
Confidence            34446665566666666666666544311    111223466777788888777799988888888764  111111222


Q ss_pred             HHcCChHHHHHHhcc---ccchhHH---HHHHHHHHHhhcCC-CCCCh--hhHh----hhHHH-H--HHhhcC-CChHHH
Q 014088           98 LSNGALMPLLAQFNE---HAKLSML---RNATWTLSNFCRGK-PQPLF--EQTR----PALPA-L--ERLIHS-NDDEVL  160 (431)
Q Consensus        98 ~~~~~i~~l~~~l~~---~~~~~~~---~~a~~~L~~l~~~~-~~~~~--~~~~----~~i~~-L--~~lL~~-~~~~v~  160 (431)
                        ...++.++..+..   ++-+...   ..++.++..+.... .....  ....    +-=|. +  -+++.. .+++-.
T Consensus       102 --~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~  179 (339)
T PF12074_consen  102 --EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDL  179 (339)
T ss_pred             --HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHH
Confidence              2356667766632   2211111   11222222211111 00000  0000    00000 0  022233 456667


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc
Q 014088          161 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ  238 (431)
Q Consensus       161 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  238 (431)
                      ...++++..+..+.......-.....-+.++.++-+.  .+.+|..|+.++..+...++..    +...++..+-+.+..
T Consensus       180 ~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~~~l~~  255 (339)
T PF12074_consen  180 CWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLWKWLSS  255 (339)
T ss_pred             HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHh
Confidence            7777788777655433221111223456778888776  7899999999999998776643    222345555555543

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=81.57  E-value=23  Score=32.75  Aligned_cols=73  Identities=8%  Similarity=0.066  Sum_probs=61.4

Q ss_pred             CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHh
Q 014088          271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~  343 (431)
                      ++..+.+-|.+.++.|...|+..+..+..++....+..+.+.++...|..++. ..++.+.+..-..+......
T Consensus        46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee  119 (462)
T KOG2199|consen   46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEE  119 (462)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence            57778899999999999999999999999998888888888899999999988 66788887766666666553

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=81.53  E-value=4.6  Score=37.09  Aligned_cols=80  Identities=20%  Similarity=0.333  Sum_probs=65.6

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILE  392 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~  392 (431)
                      ++..|..-+...++.|...|+..+..+..++++.           |+.-+...++...+..+.. +..+.|+++...++.
T Consensus        46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~-----------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~  114 (462)
T KOG2199|consen   46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR-----------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVK  114 (462)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH-----------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence            5777777888899999999999999999988764           7888888999999999977 788999999999888


Q ss_pred             HhcCCCCCCCCC
Q 014088          393 TYWVEEDEDEPL  404 (431)
Q Consensus       393 ~~~~~e~~~~~~  404 (431)
                      .|-++-.+|-.+
T Consensus       115 eWsee~K~Dp~l  126 (462)
T KOG2199|consen  115 EWSEEFKKDPSL  126 (462)
T ss_pred             HHHHHhccCcch
Confidence            877733444443

>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function

Probab=81.45  E-value=54  Score=31.76  Aligned_cols=241  Identities=17%  Similarity=0.168  Sum_probs=128.3

Q ss_pred             hhhHHHHHHhhc-CCChHHHHHHHHHHHHhc--c---C-----ChHHHHHHHHhCcHHHHHHhcCC----CCcccHHHHH
Q 014088          142 RPALPALERLIH-SNDDEVLTDACWALSYLS--D---G-----TNDKIQAVIEAGVCPRLVELLRH----PSPSVLIPAL  206 (431)
Q Consensus       142 ~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~--~---~-----~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~  206 (431)
                      ..++..+.+++. ++...++.+++|.|+.+=  .   +     -|.....+-+..++...+.++-.    +.+.+....+
T Consensus        96 nevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv  175 (589)
T PF11229_consen   96 NEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV  175 (589)
T ss_pred             HHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence            456666777766 457788999999998652  1   1     11222334445666666666522    2223322222


Q ss_pred             H-HHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHh
Q 014088          207 R-TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  285 (431)
Q Consensus       207 ~-~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  285 (431)
                      + ++..++...+...  +--.+.-..|..+++-...++++..++.....=+.. ......++..=+.|.++.-+   +..
T Consensus       176 kvvl~~ia~vgeS~q--yPPVNWaalLsPLMRlnfGeEvq~lCLeiAvtQaqS-SqsAa~fLg~WlsPpli~sL---s~~  249 (589)
T PF11229_consen  176 KVVLKPIATVGESYQ--YPPVNWAALLSPLMRLNFGEEVQQLCLEIAVTQAQS-SQSAAMFLGSWLSPPLIHSL---SVN  249 (589)
T ss_pred             HHHHHHhhhcCCCCC--CCCccHHHHhhHHHhccccHHHHHHHHHHHHHhccc-cccHHHHHHhhcCcchhhhh---hHH
Confidence            2 2222222111110  000112222333443333677888777554443333 33344555554555555433   456


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHh
Q 014088          286 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD  365 (431)
Q Consensus       286 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~  365 (431)
                      .+..-+..+..+..+-.+++.+.|.+.-.+..+...-...++++...++..|..-++.......         ....+.+
T Consensus       250 tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h---------~Ws~Lc~  320 (589)
T PF11229_consen  250 TKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQH---------CWSLLCE  320 (589)
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhH---------HHHHHHH
Confidence            6777777777777777778878776644444433333345678888888888887776654332         2344433


Q ss_pred             hccHHHHHHhh----cCCCHHHHHHHHHHHHHhcCCCC
Q 014088          366 AEGLEKIENLQ----SHDNTEIYEKAVKILETYWVEED  399 (431)
Q Consensus       366 ~~~~~~l~~l~----~~~~~~v~~~a~~~l~~~~~~e~  399 (431)
                        ..++|.+++    ....-+++....+.|..+-++|.
T Consensus       321 --ttekIF~lLPn~i~~~eveLYi~vAkCLSEMtd~ei  356 (589)
T PF11229_consen  321 --TTEKIFDLLPNKIQRNEVELYIGVAKCLSEMTDTEI  356 (589)
T ss_pred             --HHHHHHHhCcccccHHHHHHHHHHHHHHhhcCHHHH
Confidence              356666664    22334555555666666666553

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=80.63  E-value=31  Score=28.51  Aligned_cols=81  Identities=10%  Similarity=0.075  Sum_probs=56.6

Q ss_pred             CcHHHHHHhcCCCCcccHHHHHHHHhHhhcC-ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHH
Q 014088          185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  263 (431)
Q Consensus       185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  263 (431)
                      ..++.+++=|+..+...+-.|...+..+... .....-.++ ..++..+...|.+. ++++...++.+|..|+..++..-
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhh
Confidence            4567777777777777787787777777665 333333233 36777888888888 99999999999999966544433


Q ss_pred             HHHH
Q 014088          264 QAII  267 (431)
Q Consensus       264 ~~l~  267 (431)
                      ..++
T Consensus       116 ~aLv  119 (183)
T PF10274_consen  116 EALV  119 (183)
T ss_pred             HHHH
Confidence            4443

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=80.44  E-value=41  Score=36.33  Aligned_cols=240  Identities=15%  Similarity=0.144  Sum_probs=129.0

Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHh---------cC-CCCcccHHHHHHHHh
Q 014088          142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVEL---------LR-HPSPSVLIPALRTVG  210 (431)
Q Consensus       142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~l---------l~-~~~~~v~~~a~~~l~  210 (431)
                      .+++..|+..+-++..++|..+.-++..+......... ...+ ..+-.+...         .. +--..|++.++++|+
T Consensus        76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~le-d~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~  154 (1549)
T KOG0392|consen   76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLE-DLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG  154 (1549)
T ss_pred             HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHH-HHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence            45666677777778888998888888877643322111 1111 111111111         11 112368899999999


Q ss_pred             HhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHH
Q 014088          211 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA  290 (431)
Q Consensus       211 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  290 (431)
                      .+..+....    .-...+..+.+++..+ ..+++...+..+........+....+. ..+++..++-+.+.+..++..|
T Consensus       155 ~~l~~~~~s----~~~~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ds~ddv~~~a  228 (1549)
T KOG0392|consen  155 AYLKHMDES----LIKETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLEDSDDDVRSVA  228 (1549)
T ss_pred             HHHHhhhhH----hhHHHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcchHHHHHH
Confidence            987654311    1124577788888777 677766555544433221122222222 2356777788888899999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCH--HHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhcc
Q 014088          291 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP--RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG  368 (431)
Q Consensus       291 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  368 (431)
                      +.++.-.+........+.+..  ++..+.+.+..-+.  .-.......+..++...+...-         +...=.+.|.
T Consensus       229 a~~l~~~~s~~v~l~~~~i~~--lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l---------~~~~n~~~~L  297 (1549)
T KOG0392|consen  229 AQFLVPAPSIQVKLMVQKIAK--LVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDL---------FEQQNLEVGL  297 (1549)
T ss_pred             HHHhhhhhHHHHhhhHhHHHH--HHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHH---------HHHhhhhhcc
Confidence            999887766432222222222  33333333321111  0001111122222222211110         1111122466


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 014088          369 LEKIENLQSHDNTEIYEKAVKILETYWVEED  399 (431)
Q Consensus       369 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~  399 (431)
                      .+++.....|.-..++..+.+.+..+.+..+
T Consensus       298 vp~~~p~l~~~i~sv~~a~l~~l~~lle~~~  328 (1549)
T KOG0392|consen  298 VPRLWPFLRHTISSVRRAALETLAMLLEADD  328 (1549)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            7777778888888888888888888877653

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=80.34  E-value=16  Score=26.76  Aligned_cols=68  Identities=16%  Similarity=0.126  Sum_probs=51.6

Q ss_pred             HhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 014088          268 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL  337 (431)
Q Consensus       268 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L  337 (431)
                      ...++..|++.++.+....+..++..+..++.+.  .....+.+-|..+.|.++-...++..+..+-.++
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~--~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP--YAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc--HHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4557888999999998889999999999988765  5566667788888877766666666665554444

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=80.28  E-value=4  Score=29.02  Aligned_cols=67  Identities=9%  Similarity=0.154  Sum_probs=46.3

Q ss_pred             HHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc----CCChHHHHHHHHHHH
Q 014088           98 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----SNDDEVLTDACWALS  168 (431)
Q Consensus        98 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~  168 (431)
                      .+...+.++..++.+..+.++++..+.++..+.....    .....+.+.+...+.    +++.++...|..++.
T Consensus        14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~   84 (86)
T PF09324_consen   14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ   84 (86)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence            3444678888888778899999999999999987642    222344555555544    556777777766653

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	431
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		1e-180
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-112
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-112
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-107
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-107
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		3e-11
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-107
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		3e-11
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-106
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-106
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-106
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-106
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		3e-94
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		7e-05
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		4e-94
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-04
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		4e-94
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		9e-05
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		4e-94
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		8e-05
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		5e-94
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-04
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		3e-93
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		8e-05
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		2e-92
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-04
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		4e-92
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		3e-04
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		5e-92
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-04
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		6e-92
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		9e-05
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		6e-92
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-04
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		7e-92
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-04
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		8e-92
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-04
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		8e-92
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-04
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		9e-92
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-04
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-91
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-04
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		6e-34
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		5e-26
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		2e-24
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		4e-22
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		5e-23
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		3e-22
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-20
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		8e-20

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  629 bits (1623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/390 (80%), Positives = 332/390 (85%), Gaps = 3/390 (0%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAGDSPK
Sbjct: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 193
Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
           CRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPAL RLI
Sbjct: 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI 253
Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
           HSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNI
Sbjct: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313
Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXX 272
           VTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +           
Sbjct: 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII 373
Query: 273 XPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 332
            PLVNLL  AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD RIVTV
Sbjct: 374 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTV 433
Query: 333 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 392
           CLEGLENILK GE +K +   G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKAVKILE
Sbjct: 434 CLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 492
Query: 393 TYWVXXXXXXXXXXXXATQAG--FGFAGNG 420
            YW+            A   G  F F   G
Sbjct: 493 AYWMDEEDDTMGATTVAAPQGATFDFGQGG 522

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  628 bits (1620), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 312/390 (80%), Positives = 332/390 (85%), Gaps = 3/390 (0%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAGDSPK
Sbjct: 96  LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 155
Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
           CRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPAL RLI
Sbjct: 156 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI 215
Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
           HSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNI
Sbjct: 216 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 275
Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXX 272
           VTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +           
Sbjct: 276 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII 335
Query: 273 XPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 332
            PLVNLL  AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD RIVTV
Sbjct: 336 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTV 395
Query: 333 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 392
           CLEGLENILK GE +K +   G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKAVKILE
Sbjct: 396 CLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 454
Query: 393 TYWVXXXXXXXXXXXXATQAG--FGFAGNG 420
            YW+            A   G  F F   G
Sbjct: 455 AYWMDEEDDTMGATTVAAPQGATFDFGQGG 484

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  403 bits (1035), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/364 (60%), Positives = 259/364 (71%), Gaps = 3/364 (0%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
           CRD VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           +  +D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
           IVTGDD+QTQ I+N  AL  LL LL+   K+SIKKEACWTISNITAGN            
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANI 319
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 331
              L+++L  AEF  +KEAAWAI+NATSGGS EQIK+LV  GCIKPLCDLL   D +IV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379
Query: 332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
           V L GLENIL+ GE E     T G+N +   I++A GL+KIE LQSH+N EIY+KA  ++
Sbjct: 380 VALNGLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438
Query: 392 ETYW 395
           E Y+
Sbjct: 439 EHYF 442

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/364 (60%), Positives = 259/364 (71%), Gaps = 3/364 (0%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  
Sbjct: 78  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 137
Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
           CRD VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L
Sbjct: 138 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 197
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           +  +D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGN
Sbjct: 198 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
           IVTGDD+QTQ I+N  AL  LL LL+   K+SIKKEACWTISNITAGN            
Sbjct: 258 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANI 316
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 331
              L+++L  AEF  +KEAAWAI+NATSGGS EQIK+LV  GCIKPLCDLL   D +IV 
Sbjct: 317 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 376
Query: 332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
           V L GLENIL+ GE E     T G+N +   I++A GL+KIE LQSH+N EIY+KA  ++
Sbjct: 377 VALNGLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 435
Query: 392 ETYW 395
           E Y+
Sbjct: 436 EHYF 439

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  385 bits (990), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/366 (57%), Positives = 256/366 (69%), Gaps = 6/366 (1%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +Q EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206
Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +     ALP L +L
Sbjct: 207 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 265
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
           IVTG+D+QTQ +IN   LP L  LL  + K++IKKEACWTISNITAGN            
Sbjct: 326 IVTGNDLQTQVVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 384
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRI 329
             PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 445 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 503
Query: 390 ILETYW 395
           I+ETY+
Sbjct: 504 IIETYF 509

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/366 (57%), Positives = 256/366 (69%), Gaps = 6/366 (1%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +Q EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 59  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 118
Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +     ALP L +L
Sbjct: 119 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 177
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 178 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 237
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 238 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 296
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
             PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 297 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 356
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 357 IEVTLDALENILKMGEADKE-ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 390 ILETYW 395
           I+ETY+
Sbjct: 416 IIETYF 421

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 34/256 (13%)
Query: 145 LPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL- 202
           LP + + ++S+D  E L+        LS      I  VI+AGV PRLVE +R   P +L 
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IKKEACWTISNITAGNV 260
           + A   + NI +G   QT+ +++  A+P  + LL   Y  S  +K++A W + N+   + 
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL---YTGSVEVKEQAIWALGNVAGDST 117
Query: 261 NXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
           +            P++ L  + +  + + A W +SN   G   +                
Sbjct: 118 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ---------------- 161
Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA-------QAIDDAEGLEKIE 373
               PD  +V+  L  L  ++ + + E  +     ++  +       QA+ D    +++ 
Sbjct: 162 ----PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 217
Query: 374 NLQSHDNTEIYEKAVK 389
            L SH++T +   A++
Sbjct: 218 ELLSHESTLVQTPALR 233

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  385 bits (988), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/366 (57%), Positives = 256/366 (69%), Gaps = 6/366 (1%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +Q EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 59  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 118
Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +     ALP L +L
Sbjct: 119 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 177
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 178 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 237
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 238 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 296
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
             PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 297 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 356
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           + V L+ LENI+K GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 357 IEVTLDALENIIKMGEADKE-ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 390 ILETYW 395
           I+ETY+
Sbjct: 416 IIETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 34/256 (13%)
Query: 145 LPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL- 202
           LP + + ++S+D  E L+        LS      I  VI+AGV PRLVE +R   P +L 
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IKKEACWTISNITAGNV 260
           + A   + NI +G   QT+ +++  A+P  + LL   Y  S  +K++A W + N+   + 
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL---YTGSVEVKEQAIWALGNVAGDST 117
Query: 261 NXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
           +            P++ L  + +  + + A W +SN   G   +                
Sbjct: 118 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ---------------- 161
Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA-------QAIDDAEGLEKIE 373
               PD  +V+  L  L  ++ + + E  +     ++  +       QA+ D    +++ 
Sbjct: 162 ----PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 217
Query: 374 NLQSHDNTEIYEKAVK 389
            L SH++T +   A++
Sbjct: 218 ELLSHESTLVQTPALR 233

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/366 (57%), Positives = 255/366 (69%), Gaps = 6/366 (1%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +Q EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 60  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 119
Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +     ALP L +L
Sbjct: 120 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 178
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 179 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 238
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 239 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 297
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
             PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 298 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 357
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 358 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 390 ILETYW 395
           I+ETY+
Sbjct: 417 IIETYF 422

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  382 bits (982), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/366 (57%), Positives = 255/366 (69%), Gaps = 6/366 (1%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +Q EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +     ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
             PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKE-ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 390 ILETYW 395
           I+ETY+
Sbjct: 418 IIETYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  382 bits (982), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/366 (57%), Positives = 255/366 (69%), Gaps = 6/366 (1%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +Q EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +     ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
             PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 390 ILETYW 395
           I+ETY+
Sbjct: 418 IIETYF 423

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  382 bits (981), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/366 (57%), Positives = 255/366 (69%), Gaps = 6/366 (1%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +Q EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 60  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 119
Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +     ALP L +L
Sbjct: 120 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 178
Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 179 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 238
Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 271
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 239 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 297
Query: 272 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
             PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 298 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 357
Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 358 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 390 ILETYW 395
           I+ETY+
Sbjct: 417 IIETYF 422

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  342 bits (877), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 189/404 (46%), Positives = 256/404 (63%), Gaps = 16/404 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 355
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 416 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 469
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
           + ++E Y+              T  GF F   +G P   G FNF
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 96  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 198

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  341 bits (875), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/404 (46%), Positives = 256/404 (63%), Gaps = 16/404 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 73  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 132
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 192
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 193 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 252
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 311
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 371
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 372 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 425
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
           + ++E Y+              T  GF F   +G P   G FNF
Sbjct: 426 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 466

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 52  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 111
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 112 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 154

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  341 bits (875), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/404 (46%), Positives = 256/404 (63%), Gaps = 16/404 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 103 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 162
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 163 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 222
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 223 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 282
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 283 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 341
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 342 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 401
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 402 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 455
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
           + ++E Y+              T  GF F   +G P   G FNF
Sbjct: 456 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 496

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 82  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 141
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 142 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 184

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  341 bits (875), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/404 (46%), Positives = 256/404 (63%), Gaps = 16/404 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 355
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 416 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 469
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
           + ++E Y+              T  GF F   +G P   G FNF
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 96  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 198

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  341 bits (874), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 189/404 (46%), Positives = 256/404 (63%), Gaps = 16/404 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 67  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 126
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 246
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 247 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 305
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 306 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 365
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 366 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 419
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
           + ++E Y+              T  GF F   +G P   G FNF
Sbjct: 420 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 460

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 46  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 105
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 106 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 148

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  338 bits (868), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 188/403 (46%), Positives = 255/403 (63%), Gaps = 16/403 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 355
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 416 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 469
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFN 429
           + ++E Y+              T  GF F   +G P   G FN
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFN 509

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 96  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 198

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  336 bits (861), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/404 (46%), Positives = 254/404 (62%), Gaps = 16/404 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AG    
Sbjct: 136 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 255
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 256 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 374
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +K AAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 375 NHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 435 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 488
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
           + ++E Y+              T  GF F   +G P   G FNF
Sbjct: 489 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 529

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 174
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 175 HAHISEQAVWALGNIAGAGSAFR-DLVIKHGAIDPLLALLAVPD 217

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  335 bits (858), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 185/404 (45%), Positives = 251/404 (62%), Gaps = 16/404 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 68  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSV 127
Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSM----LRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+  GA+ PLLA        S+    LRN TWTLSN CR K P P  +     LP 
Sbjct: 128 FRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPT 187
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H +D EVL D CWA+SYL+DG N++I  V++ GV P+LV+LL      ++ PALR
Sbjct: 188 LVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALR 247
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 248 AIGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 306
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV++L  A+F+ +KEA WA++N TSGG+ EQI +LV  G I+PL +LL   D 
Sbjct: 307 NHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDT 366
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ+H+N  +Y+ +
Sbjct: 367 KIILVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQNHENESVYKAS 420
Query: 388 VKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 430
           + ++E Y+              T  G+ F   +G P   G FNF
Sbjct: 421 LSLIEKYFSVEEEEDQNVVPETTSEGYTFQVQDGAP---GTFNF 461

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 47  IIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 106
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G + PL  LL  PD
Sbjct: 107 HAHISEQAVWALGNIAGDGSVFR-DLVIKYGAVDPLLALLAVPD 149

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  334 bits (857), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 67  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 126
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 246
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 247 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 305
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 306 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 365
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 366 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 419
Query: 388 VKILETYW 395
           + ++E Y+
Sbjct: 420 LNLIEKYF 427

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 46  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 105
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 106 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 148

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  334 bits (856), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 101 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 160
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 161 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 220
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 221 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 280
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 281 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 339
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 340 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 399
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 400 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 453
Query: 388 VKILETYW 395
           + ++E Y+
Sbjct: 454 LNLIEKYF 461

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 80  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 139
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 140 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 182

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  334 bits (856), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 66  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 125
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 126 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 185
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 186 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 245
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 246 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 304
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 305 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 364
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 365 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 418
Query: 388 VKILETYW 395
           + ++E Y+
Sbjct: 419 LNLIEKYF 426

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 45  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 104
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 105 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 147

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  334 bits (856), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 67  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 126
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 246
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 247 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 305
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 306 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 365
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 366 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 419
Query: 388 VKILETYW 395
           + ++E Y+
Sbjct: 420 LNLIEKYF 427

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 46  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 105
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 106 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 148

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  333 bits (855), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 62  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 121
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 241
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 242 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 300
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 301 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 360
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 361 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 414
Query: 388 VKILETYW 395
           + ++E Y+
Sbjct: 415 LNLIEKYF 422

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 41  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 100
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 101 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 143

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  333 bits (855), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 62  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 121
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 241
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 242 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 300
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 301 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 360
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 361 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 414
Query: 388 VKILETYW 395
           + ++E Y+
Sbjct: 415 LNLIEKYF 422

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 41  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 100
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 101 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 143

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  333 bits (855), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 66  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 125
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 126 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 185
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 186 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 245
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 246 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 304
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 305 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 364
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 365 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 418
Query: 388 VKILETYW 395
           + ++E Y+
Sbjct: 419 LNLIEKYF 426

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 45  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 104
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 105 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 147

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  333 bits (854), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 245/368 (66%), Gaps = 12/368 (3%)
Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 93  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 152
Query: 93  CRDLVLSNGALMPLLAQFN--EHAKLS--MLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA     + + L+   LRN TWTLSN CR K P P  +     LP 
Sbjct: 153 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 212
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 213 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 272
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +      
Sbjct: 273 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 331
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 332 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 391
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 392 KIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKAS 445
Query: 388 VKILETYW 395
           + ++E Y+
Sbjct: 446 LNLIEKYF 453

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNA 282
           II    +P  +  L +     I+ E+ W ++NI +G                 ++LL + 
Sbjct: 72  IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 131
Query: 283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 326
              I ++A WA+ N    GS  +   ++  G I PL  LL  PD
Sbjct: 132 HAHISEQAVWALGNIAGDGSAFR-DLVIKHGAIDPLLALLAVPD 174

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  141 bits (356), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/249 (37%), Positives = 138/249 (55%), Gaps = 16/249 (6%)
Query: 145 LPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
           LP + + ++S+D +    A    S  LSDG N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 204 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 263
            AL  + NI +G + Q Q +I+  ALP L+ LL+ +  + I +EA W +SNI +G     
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 264 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323
                      LV LL +   +I +EA WA+SN  SGG NEQI+ ++  G +  L  LL+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 324 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 383
            P+ +I+   L  L NI   G  +K            QA+ +A  LEK+E LQSH+N +I
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK------------QAVKEAGALEKLEQLQSHENEKI 238
Query: 384 YEKAVKILE 392
            ++A + LE
Sbjct: 239 QKEAQEALE 247

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 246
            P++V+ L  P    L  ALR +  I +G + Q Q +I+  ALP L+ LL+ +  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 247 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 306
           EA W +SNI +G                LV LL +   +I +EA WA+SN  SGG NEQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 366
           + ++  G +  L  LL+ P+ +I+   L  L NI   G  +K            QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 367 EGLEKIENLQSHDNTEIYEKAVKILETY 394
             LEK+E LQSH+N +I ++A + LE  
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKL 207

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 95/166 (57%), Gaps = 10/166 (6%)
Query: 41  LTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 100
           L+ IASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +    V+  
Sbjct: 36  LSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95
Query: 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-----ALPALERLIHSN 155
           GAL P L Q        +L+ A W LSN   G      EQ +      ALPAL +L+ S 
Sbjct: 96  GAL-PALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSP 150
Query: 156 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 201
           ++++L +A WALS ++ G N++ QAV EAG  P L +L   P+  +
Sbjct: 151 NEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKI 196

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 14/206 (6%)
Query: 187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 246
            P++V+ L  P    L  ALR +  I +G + Q Q +I+  ALP L+ LL+ +  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 247 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 306
           EA W +SNI +G                LV LL +   +I +EA WA+SN  SGG NEQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 366
           + ++  G +  L  LL+ P+ +I+   L  L NI   G  +K            QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 367 EGLEKIENLQSHDNTEIYEKAVKILE 392
                +E LQS  N +I ++A + LE
Sbjct: 180 GAEPALEQLQSSPNEKIQKEAQEALE 205

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 107/197 (54%), Gaps = 4/197 (2%)
Query: 145 LPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
           LP + + ++S+D +    A    S  LSDG N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 204 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 263
            AL  + NI +G + Q Q +I+  ALP L+ LL+ +  + I +EA W +SNI +G     
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 264 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323
                      LV LL +   +I +EA WA+SN  SGG NEQ + +   G ++ L  L +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 324 CPDPRIVTVCLEGLENI 340
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 14/206 (6%)
Query: 187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 246
            P++ + L        + A R    I++  + Q Q +I+  ALP L+ LL+ +  + I +
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 247 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 306
           EA W +SNI +G                LV LL +   +I +EA WA+SN  SGG NEQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 366
           + ++  G +  L  LL+ P+ +I+   L  L NI   G  +K            QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 367 EGLEKIENLQSHDNTEIYEKAVKILE 392
             LEK+E LQSH+N +I ++A + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 43/268 (16%)
Query: 34  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 93
           Q EAA  L  IASG +   + ++D G V + V+LL+S   +V+++A  AL N+A    + 
Sbjct: 19  QKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 94  RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 153
              ++  G +  L+                                          +L+ 
Sbjct: 79  IKAIVDAGGVEVLV------------------------------------------KLLT 96
Query: 154 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 213
           S D EV  +A  AL+ ++ G ++ I+A+++AG    LV+LL      V   A R + NI 
Sbjct: 97  STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156
Query: 214 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 273
           +G D   + I++   +  L+ LLT +    ++KEA   ++NI +G  +            
Sbjct: 157 SGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVE 215
Query: 274 PLVNLLLNAEFEIKKEAAWAISNATSGG 301
            L  LL + + E++KEA  A+ N  SGG
Sbjct: 216 VLQKLLTSTDSEVQKEAQRALENIKSGG 243

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 94.7 bits (234), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 14/245 (5%)
Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L +L+ S D E   +A   L+ ++ G    I+A+++AG    LV+LL      V   A R
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 267
            + NI +G D   + I++   +  L+ LLT +    ++KEA   ++NI +G         
Sbjct: 67  ALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIV 125
Query: 268 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
                  LV LL + + E++KEAA A++N  S G +E IK +V  G ++ L  LL   D 
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
            +       L NI          G T  +    +AI DA G+E ++ L +  ++E+ ++A
Sbjct: 185 EVQKEAARALANIAS--------GPTSAI----KAIVDAGGVEVLQKLLTSTDSEVQKEA 232
Query: 388 VKILE 392
            + LE
Sbjct: 233 QRALE 237

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	431
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-172
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-53
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-166
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-52
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-166
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-53
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-37
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-31
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-15
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-107
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-66
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-65
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-64
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-53
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-28
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-104
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-72
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-71
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-52
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-26
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-98
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-70
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-61
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-59
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-91
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-77
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-75
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-74
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-70
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-61
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-28
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-51
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-38
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-72
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-63
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-14
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-65
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-24
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	6e-23
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-18
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-62
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-52
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-30
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-27
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-18
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-55
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	8e-27
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-22
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-50
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-41
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-23
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	9e-17
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-42
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-40
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-39
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-31
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-35
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-24
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	6e-19
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-15
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-14
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-15
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-15
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-13
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	9e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	8e-11
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-06
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	4e-09
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	2e-08
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	5e-04
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	5e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-04
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	5e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-05
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	5e-07
3grl_A	651	General vesicular transport factor P115; vesicle t	9e-07
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	2e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	3e-05

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  490 bits (1262), Expect = e-172
 Identities = 229/371 (61%), Positives = 270/371 (72%), Gaps = 3/371 (0%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
           CRD VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           +  +D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260

Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 271
           IVTGDD+QTQ I+N  AL  LL LL  + K+SIKKEACWTISNITAGN  QIQ +I+A I
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319

Query: 272 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 331
              L+++L  AEF  +KEAAWAI+NATSGGS EQIK+LV  GCIKPLCDLL   D +IV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379

Query: 332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
           V L GLENIL+ GE E       G+N +   I++A GL+KIE LQSH+N EIY+KA  ++
Sbjct: 380 VALNGLENILRLGEQEAKRNG-TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438

Query: 392 ETYWVEEDEDE 402
           E Y+  EDED 
Sbjct: 439 EHYFGTEDEDS 449

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  183 bits (466), Expect = 3e-53
 Identities = 60/351 (17%), Positives = 130/351 (37%), Gaps = 56/351 (15%)

Query: 43  NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA--GDSPKCRDLVLSN 100
                   N  +          + ++ S + + +  A      +     +P   +++ + 
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL 160
           G +                                            +E L    +  + 
Sbjct: 64  GVVARF-----------------------------------------VEFLKRKENCTLQ 82

Query: 161 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 220
            ++ W L+ ++ G + + + VI+AG  P  +ELL      V   A+  +GNI     M  
Sbjct: 83  FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142

Query: 221 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 280
             +++   LP LL L ++  + ++ + A W +SN+  G     +    +  +  L  LL 
Sbjct: 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202

Query: 281 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 340
            ++ ++  +A WA+S  +  G N++I+ ++  G  + L +LL   D ++V+  L  + NI
Sbjct: 203 VSDTDVLADACWALSYLSD-GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261

Query: 341 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
           +   +               Q I +   L+ + +L S     I ++A   +
Sbjct: 262 VTGDDI------------QTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  477 bits (1228), Expect = e-166
 Identities = 227/412 (55%), Positives = 282/412 (68%), Gaps = 11/412 (2%)

Query: 11  ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 70
           ++I   V               +Q EAAWALTNIASGTS  T+VV+D  AVP+F++LL +
Sbjct: 125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 184

Query: 71  PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 130
            + +V+EQA+WALGNVAGDS   RD VL   A+ P+L  FN + K S++R ATWTLSN C
Sbjct: 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLC 243

Query: 131 RGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 189
           RGK PQP +     ALP L +LI+S D E L DACWA+SYLSDG  + IQAVI+  +  R
Sbjct: 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 303

Query: 190 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 249
           LVELL H S  V  PALR VGNIVTG+D+QTQ +IN   LP L  LL  + K++IKKEAC
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEAC 362

Query: 250 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIK 307
           WTISNITAGN  QIQA+I+A +I PLV LL  AE++ KKEA WAISNA+SGG    + I+
Sbjct: 363 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 422

Query: 308 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE 367
           +LVSQGCIKPLCDLL   D RI+ V L+ LENILK GEA+K       +N  A  I+ A 
Sbjct: 423 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL-NINENADFIEKAG 481

Query: 368 GLEKIENLQSHDNTEIYEKAVKILETYWVEEDE--DEPLPPGDATQAGFGFA 417
           G+EKI N Q ++N +IYEKA KI+ETY+ EE++  DE + P +   AG  F 
Sbjct: 482 GMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQN---AGNTFG 530

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  183 bits (465), Expect = 1e-52
 Identities = 80/364 (21%), Positives = 143/364 (39%), Gaps = 16/364 (4%)

Query: 30  FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89
           F      A     + +S +++          +P   + L+S     +  A      +   
Sbjct: 58  FIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSR 117

Query: 90  SPKCR-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPA 147
             +   D+V+  G +  L+    E+    +   A W L+N   G   Q        A+P 
Sbjct: 118 EHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL 177

Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
             +L+++   EV   A WAL  ++  + D    V++      ++ L     PS++  A  
Sbjct: 178 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 237

Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 267
           T+ N+  G   Q    +  QALP L  L+     +    +ACW IS ++ G    IQA+I
Sbjct: 238 TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQEAIQAVI 296

Query: 268 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
           +  I   LV LL +    ++  A  A+ N  + G++ Q + +++ G +  L  LL+ P  
Sbjct: 297 DVRIPKRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVINAGVLPALRLLLSSPKE 355

Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
            I       + NI  AG  E             QA+ DA  +  +  L      +  ++A
Sbjct: 356 NIKKEACWTISNIT-AGNTE-----------QIQAVIDANLIPPLVKLLEVAEYKTKKEA 403

Query: 388 VKIL 391
              +
Sbjct: 404 CWAI 407

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  476 bits (1225), Expect = e-166
 Identities = 191/403 (47%), Positives = 259/403 (64%), Gaps = 14/403 (3%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176

Query: 93  CRDLVLSNGALMPLLAQFNEH----AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPA 147
            RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP 
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236

Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296

Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 267
            +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +QIQ ++
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 355

Query: 268 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
             G++  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415

Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E        G     +  I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 416 KIIQVILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 469

Query: 388 VKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 430
           + ++E Y+  E+E++     + T  GF F         G FNF
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQ--DGAPGTFNF 510

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  184 bits (468), Expect = 4e-53
 Identities = 71/356 (19%), Positives = 135/356 (37%), Gaps = 21/356 (5%)

Query: 43  NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNG 101
           +  +     +     + +V   V+ ++S   + + QA  A   +   +     D ++  G
Sbjct: 41  DDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 100

Query: 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVL 160
            +   ++   +     +   + W L+N   G  +         A+PA   L+ S    + 
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160

Query: 161 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT-----VGNIVTG 215
             A WAL  ++   +     VI+ G    L+ LL  P  S L           + N+   
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 216 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 275
            +         Q LP L+ LL  N  + +  ++CW IS +T G   +I+ +++ G++  L
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPE-VLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 276 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 335
           V LL   E  I   A  AI N  + G++EQ + ++  G +     LL  P   I      
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVT-GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338

Query: 336 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
            + NI            T G     Q + +   +  +  + S  + +  ++A   +
Sbjct: 339 TMSNI------------TAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI 382

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  141 bits (357), Expect = 2e-37
 Identities = 51/279 (18%), Positives = 97/279 (34%), Gaps = 21/279 (7%)

Query: 120 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKI 178
            +      +               ++  + + I+SN+ E    A  A    LS      I
Sbjct: 34  PDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI 93

Query: 179 QAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 237
             +I AG+ P+ V  L +     +   +   + NI +G   QT+ +++  A+P  + LL 
Sbjct: 94  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL- 152

Query: 238 QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE-----AAW 292
            +    I ++A W + NI          +I+ G I PL+ LL   +             W
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212

Query: 293 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN 352
            +SN      N        +  +  L  LL+  DP ++      +  +            
Sbjct: 213 TLSNLCR-NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL------------ 259

Query: 353 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
           T G N   + +     + ++  L       I   A++ +
Sbjct: 260 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  125 bits (315), Expect = 1e-31
 Identities = 45/201 (22%), Positives = 90/201 (44%), Gaps = 9/201 (4%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
            +   A  A+ NI +GT E T+ VID GA+ +F  LL++P  +++++A W + N+     
Sbjct: 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 348

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG--KPQPLFEQTRPALPALE 149
                V+++G + P L      A     + A W ++N+  G    Q ++      +  L 
Sbjct: 349 DQIQQVVNHGLV-PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407

Query: 150 RLIHSNDDEVLTDACWALSYL------SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
            L+ + D +++     A+S +         T      + E G   ++  L RH + SV  
Sbjct: 408 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYK 467

Query: 204 PALRTVGNIVTGDDMQTQCII 224
            +L  +    + ++ + Q ++
Sbjct: 468 ASLNLIEKYFSVEEEEDQNVV 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 78.1 bits (192), Expect = 1e-15
 Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 16/196 (8%)

Query: 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 262
            P L T  +     D+ +     + ++  ++  +  N  +  + +A      + +     
Sbjct: 33  SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLE-SQLQATQAARKLLSREKQP 91

Query: 263 -IQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
            I  II AG+I   V+ L   +   I+ E+AWA++N  S G++EQ K +V  G I     
Sbjct: 92  PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFIS 150

Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 380
           LL  P   I    +  L NI  AG+                 +     ++ +  L +  +
Sbjct: 151 LLASPHAHISEQAVWALGNI--AGDGSAF----------RDLVIKHGAIDPLLALLAVPD 198

Query: 381 TEIYEKAVKILETYWV 396
                       T+ +
Sbjct: 199 LSTLACGYLRNLTWTL 214

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 26/148 (17%), Positives = 42/148 (28%), Gaps = 13/148 (8%)

Query: 245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 304
                 T  +  A              +  +V  + +   E + +A  A     S     
Sbjct: 32  DSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP 91

Query: 305 QIKFLVSQGCIKPLCDLLNCPD-PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAI 363
            I  ++  G I      L   D   I       L NI     A      T       +A+
Sbjct: 92  PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNI-----ASGTSEQT-------KAV 139

Query: 364 DDAEGLEKIENLQSHDNTEIYEKAVKIL 391
            D   +    +L +  +  I E+AV  L
Sbjct: 140 VDGGAIPAFISLLASPHAHISEQAVWAL 167

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  329 bits (844), Expect = e-107
 Identities = 54/380 (14%), Positives = 107/380 (28%), Gaps = 17/380 (4%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           V F A   L N+          V   G +   V LL+             L  +A  + +
Sbjct: 114 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
            + ++L++G    L+     +    +L   +  L                  + AL   +
Sbjct: 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 233

Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
                 ++ +  W L  LSD    +       G+   LV+LL     +V+  A   + N+
Sbjct: 234 TDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNL 290

Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QIQAIIE 268
              +      +     +  L+  + +   ++ I + A   + ++T+ +        A+  
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350

Query: 269 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 328
              +  +V LL         +A   +    +         L  QG I  L  LL      
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAHQD 409

Query: 329 IVTVCLEGLENILKAGE---------AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD 379
                  G                      +            I     +     L    
Sbjct: 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP 469

Query: 380 NTEIYEKAVKILETYWVEED 399
              I   A  +L     +++
Sbjct: 470 IENIQRVAAGVLCELAQDKE 489

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  222 bits (567), Expect = 3e-66
 Identities = 60/344 (17%), Positives = 117/344 (34%), Gaps = 19/344 (5%)

Query: 50  ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 109
                 +   A+P   +LL+     V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 110 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 169
                 +   R    TL N    +   L       +PAL +++ S  D VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 170 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 229
           L         AV  AG   ++V LL   +   L      +  +  G+      I+     
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 230 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 289
             L++++     + +       +  ++  + N+  AI+EAG +  L   L +    + + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 290 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 349
             W + N +   + +       +G +  L  LL   D  +VT     L N+       K 
Sbjct: 244 CLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK- 298

Query: 350 MGNTGGVNLFAQAIDDAEGLEKIENL--QSHDNTEIYEKAVKIL 391
                        +    G+E +     ++ D  +I E A+  L
Sbjct: 299 -----------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  219 bits (560), Expect = 2e-65
 Identities = 59/360 (16%), Positives = 126/360 (35%), Gaps = 20/360 (5%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSP 91
           V  +AA  +  ++   +    ++     V   VR + +  D +        L N++    
Sbjct: 30  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHR 88

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALER 150
           +    +  +G + P L +       S+L  A  TL N    +    +  +    L  +  
Sbjct: 89  EGLLAIFKSGGI-PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 147

Query: 151 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 210
           L++  + + L      L  L+ G  +    ++ +G    LV ++R  +   L+     V 
Sbjct: 148 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

Query: 211 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 270
            +++        I+    +  L   L  +  + + +   WT+ N++     Q       G
Sbjct: 208 KVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQEG---MEG 263

Query: 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL--NCPDPR 328
           ++G LV LL + +  +   AA  +SN T   + +    +   G I+ L   +        
Sbjct: 264 LLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNKMMVCQVGGIEALVRTVLRAGDRED 322

Query: 329 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 388
           I    +  L ++    +  +         +   A+    GL  +  L    +     KA 
Sbjct: 323 ITEPAICALRHLTSRHQEAE---------MAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  216 bits (552), Expect = 3e-64
 Identities = 73/361 (20%), Positives = 123/361 (34%), Gaps = 25/361 (6%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
                A  L N+ S   E    +   G +P  V++L SP D V   A+  L N+      
Sbjct: 73  TARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 131

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERL 151
            +  V   G L   +        +  L   T  L     G  +  L         AL  +
Sbjct: 132 AKMAVRLAGGL-QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190

Query: 152 IHSNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 210
           + +   E L       L  LS  +++K  A++EAG    L   L  PS  ++   L T+ 
Sbjct: 191 MRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249

Query: 211 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 270
           N+    D  T+       L  L+ LL  +   ++   A   +SN+T  N      + + G
Sbjct: 250 NL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305

Query: 271 IIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPD 326
            I  LV  +L A    +I + A  A+ + TS           +     +  +  LL+ P 
Sbjct: 306 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 365

Query: 327 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 386
              +     GL   L    A                + +   + ++  L    + +   +
Sbjct: 366 HWPLIKATVGLIRNLALCPANH------------APLREQGAIPRLVQLLVRAHQDTQRR 413

Query: 387 A 387
            
Sbjct: 414 T 414

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  188 bits (478), Expect = 2e-53
 Identities = 68/415 (16%), Positives = 121/415 (29%), Gaps = 48/415 (11%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +     W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K
Sbjct: 240 LVQNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 296

Query: 93  CRDLVLSNGALMPLL-AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP----ALPA 147
            + +V   G +  L+        +  +   A   L +      +    Q        LP 
Sbjct: 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 356

Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           + +L+H      L  A   L             + E G  PRLV+LL             
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416

Query: 208 TVGNIVTGDDMQT---------------------QCIINHQALPCLLDLLTQNYKKSIKK 246
                   + ++                        I     +P  + LL  +  ++I++
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQR 475

Query: 247 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 306
            A   +  + A +    +AI   G   PL  LL +    +   AA  +   +     +  
Sbjct: 476 VAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYK 534

Query: 307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEK-------NMGNTGGVNLF 359
           K L S      L             + L+        G  +        + G  G   L 
Sbjct: 535 KRL-SVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALG 593

Query: 360 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGF 414
              + + E            +                 +D  + LPPGD+ Q  +
Sbjct: 594 MDPMMEHEMGGHHPGADYPVDGLPDLGHA---------QDLMDGLPPGDSNQLAW 639

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  115 bits (289), Expect = 7e-28
 Identities = 31/218 (14%), Positives = 79/218 (36%), Gaps = 15/218 (6%)

Query: 175 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 234
           N +  A +     P L +LL      V+  A   V  +   +  +   + + Q +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 235 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 294
            +         +    T+ N++        AI ++G I  LV +L +    +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 295 SNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG 354
            N        ++  +   G ++ +  LLN  + + + +  + L+ +     A  N  +  
Sbjct: 123 HNLLLHQEGAKMA-VRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-----AYGNQES-- 174

Query: 355 GVNLFAQAIDDAEGLEK-IENLQSHDNTEIYEKAVKIL 391
                   I  + G +  +  ++++   ++     ++L
Sbjct: 175 -----KLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  319 bits (819), Expect = e-104
 Identities = 55/372 (14%), Positives = 104/372 (27%), Gaps = 17/372 (4%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           V F A   L N+          V   G +   V LL+             L  +A  + +
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
            + ++L++G    L+     +    +L   +  L                  + AL   +
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
                 ++ +  W L  LSD    +       G+   LV+LL     +V+  A   + N+
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNL 293

Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QIQAIIE 268
              +      +     +  L+  + +   ++ I + A   + ++T+ +        A+  
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 353

Query: 269 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 328
              +  +V LL         +A   +    +         L  QG I  L  LL      
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQD 412

Query: 329 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFA---------QAIDDAEGLEKIENLQSHD 379
                  G                 G                 I     +     L    
Sbjct: 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP 472

Query: 380 NTEIYEKAVKIL 391
              I   A  +L
Sbjct: 473 IENIQRVAAGVL 484

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  234 bits (599), Expect = 6e-72
 Identities = 61/354 (17%), Positives = 120/354 (33%), Gaps = 22/354 (6%)

Query: 40  ALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 99
           A+ N+ +         +   A+P   +LL+     V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEV 159
              +  ++        +   R    TL N    +   L       +PAL +++ S  D V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 160 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 219
           L  A   L  L         AV  AG   ++V LL   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 220 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 279
              I+       L++++     + +       +  + +   +   AI+EAG +  L   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 280 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 339
            +    + +   W + N +   + +       +G +  L  LL   D  +VT     L N
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 340 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL--QSHDNTEIYEKAVKIL 391
           +       K              +    G+E +     ++ D  +I E A+  L
Sbjct: 293 LTCNNYKNK------------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  231 bits (592), Expect = 6e-71
 Identities = 65/385 (16%), Positives = 116/385 (30%), Gaps = 44/385 (11%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSP 91
                   L  +A G  E+  +++  G     V ++ + T   +       L  ++    
Sbjct: 159 FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CS 217

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151
             +  ++  G +   L          +++N  WTL N      +         L  L +L
Sbjct: 218 SNKPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQL 274

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI--PALRTV 209
           + S+D  V+T A   LS L+         V + G    LV  +        I  PA+  +
Sbjct: 275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

Query: 210 GNIVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 266
            ++ +      M    +  H  LP ++ LL          +A   +    A        +
Sbjct: 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPL 393

Query: 267 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--------------------SNEQI 306
            E G I  LV LL+ A  + ++  +   +                               
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 453

Query: 307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 366
             +     I     LL  P   I  V    L  + +  EA             A+AI+  
Sbjct: 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-------------AEAIEAE 500

Query: 367 EGLEKIENLQSHDNTEIYEKAVKIL 391
                +  L    N  +   A  +L
Sbjct: 501 GATAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  182 bits (464), Expect = 3e-52
 Identities = 56/313 (17%), Positives = 101/313 (32%), Gaps = 32/313 (10%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +     W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K
Sbjct: 243 LVQNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 299

Query: 93  CRDLVLSNGALMPLLAQ-FNEHAKLSMLRNATWTLSNFCRGKPQP----LFEQTRPALPA 147
            + +V   G +  L+        +  +   A   L +      +        +    LP 
Sbjct: 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359

Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           + +L+H      L  A   L             + E G  PRLV+LL             
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 419

Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 267
                   + ++ + I+                      E C    +I A +V+    I 
Sbjct: 420 GGTQQQFVEGVRMEEIV----------------------EGCTGALHILARDVHNRIVIR 457

Query: 268 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
               I   V LL +    I++ AA  +         E  + + ++G   PL +LL+  + 
Sbjct: 458 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNE 515

Query: 328 RIVTVCLEGLENI 340
            + T     L  +
Sbjct: 516 GVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  108 bits (272), Expect = 7e-26
 Identities = 39/227 (17%), Positives = 74/227 (32%), Gaps = 26/227 (11%)

Query: 33  VQFEAAWALTNIASGTSENTRV---VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 89
           +   A  AL ++ S   E       V  H  +P+ V+LL  P+     +A   L      
Sbjct: 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385

Query: 90  SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 149
            P     +   GA+ P L Q    A     R  +   +     +                
Sbjct: 386 CPANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV-------------- 430

Query: 150 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
                  +E++     AL  L+   +++I  +      P  V+LL  P  ++   A   +
Sbjct: 431 -----RMEEIVEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484

Query: 210 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 256
             +    +   + I    A   L +LL  +  + +   A   +  ++
Sbjct: 485 CELAQDKEAA-EAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  293 bits (752), Expect = 2e-98
 Identities = 95/249 (38%), Positives = 143/249 (57%), Gaps = 14/249 (5%)

Query: 144 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
            LP + + ++S+D +    A    S +    N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 204 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 263
            AL  + NI +G + Q Q +I+  ALP L+ LL  +  + I +EA W +SNI +G   QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 264 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323
           QA+I+AG +  LV LL +   +I +EA WA+SN  S G NEQI+ ++  G +  L  LL+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLS 190

Query: 324 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 383
            P+ +I+   L  L NI   G  +K            QA+ +A  LEK+E LQSH+N +I
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK------------QAVKEAGALEKLEQLQSHENEKI 238

Query: 384 YEKAVKILE 392
            ++A + LE
Sbjct: 239 QKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  221 bits (564), Expect = 5e-70
 Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 2/183 (1%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +  EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERL 151
               V+  GAL P L Q        +L+ A W LSN   G   Q        ALPAL +L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           + S ++++L +A WALS ++ G N++ QAV EAG   +L +L  H +  +   A   +  
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

Query: 212 IVT 214
           + +
Sbjct: 249 LQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  199 bits (507), Expect = 2e-61
 Identities = 90/267 (33%), Positives = 135/267 (50%), Gaps = 43/267 (16%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
            Q  A    + I S  +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +
Sbjct: 28  EQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
               V+  G                                          ALPAL +L+
Sbjct: 88  QIQAVIDAG------------------------------------------ALPALVQLL 105

Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
            S ++++L +A WALS ++ G N++IQAVI+AG  P LV+LL  P+  +L  AL  + NI
Sbjct: 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165

Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 272
            +G + Q Q +I+  ALP L+ LL+    + I +EA W +SNI +G   Q QA+ EAG +
Sbjct: 166 ASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGAL 224

Query: 273 GPLVNLLLNAEFEIKKEAAWAISNATS 299
             L  L  +   +I+KEA  A+    S
Sbjct: 225 EKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  192 bits (491), Expect = 3e-59
 Identities = 88/282 (31%), Positives = 136/282 (48%), Gaps = 44/282 (15%)

Query: 59  GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 118
             +P   + L+S     +  A      +  D  +    V+  GAL               
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL--------------- 56

Query: 119 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 178
                                      PAL +L+ S ++++L +A WALS ++ G N++I
Sbjct: 57  ---------------------------PALVQLLSSPNEQILQEALWALSNIASGGNEQI 89

Query: 179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 238
           QAVI+AG  P LV+LL  P+  +L  AL  + NI +G + Q Q +I+  ALP L+ LL  
Sbjct: 90  QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-S 148

Query: 239 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 298
           +  + I +EA W +SNI +G   QIQA+I+AG +  LV LL +   +I +EA WA+SN  
Sbjct: 149 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208

Query: 299 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 340
           SG  NEQ + +   G ++ L  L +  + +I     E LE +
Sbjct: 209 SG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  290 bits (744), Expect = 5e-91
 Identities = 55/380 (14%), Positives = 111/380 (29%), Gaps = 17/380 (4%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           V F A   L N+          V   G +   V LL+             L  +A  + +
Sbjct: 250 VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 309

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
            + ++L++G    L+     +    +L   +  L                  + AL   +
Sbjct: 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 369

Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
                 ++ +  W L  LSD    +       G+   LV+LL     +V+  A   + N+
Sbjct: 370 TDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNL 426

Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QIQAIIE 268
              +      +     +  L+  + +   ++ I + A   + ++T+ + +      A+  
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486

Query: 269 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 328
              +  +V LL         +A   +    +         L  QG I  L  LL      
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAHQD 545

Query: 329 IVTVC---------LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD 379
                         +EG+            +            I     +     L    
Sbjct: 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP 605

Query: 380 NTEIYEKAVKILETYWVEED 399
              I   A  +L     +++
Sbjct: 606 IENIQRVAAGVLCELAQDKE 625

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  255 bits (652), Expect = 2e-77
 Identities = 69/360 (19%), Positives = 121/360 (33%), Gaps = 23/360 (6%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
                +  L N++    E    +   G +P  V +L SP D V   A+  L N+      
Sbjct: 209 TARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERL 151
            +  V   G L  ++A  N    +  L   T  L     G     L         AL  +
Sbjct: 268 AKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           + +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N
Sbjct: 327 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 386

Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 271
           +    D  T+       L  L+ LL  +   ++   A   +SN+T  N      + + G 
Sbjct: 387 L---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 442

Query: 272 IGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDP 327
           I  LV  +L A    +I + A  A+ + TS   +       +     +  +  LL+ P  
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502

Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
             +     GL   L    A                + +   + ++  L    + +   + 
Sbjct: 503 WPLIKATVGLIRNLALCPANH------------APLREQGAIPRLVQLLVRAHQDTQRRT 550

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  249 bits (637), Expect = 2e-75
 Identities = 62/359 (17%), Positives = 120/359 (33%), Gaps = 20/359 (5%)

Query: 36  EAAWALTNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 94
           E +  L +      +      +   A+P   +LL+     V  +A   +  ++       
Sbjct: 126 EPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185

Query: 95  DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 154
            ++ S   +  ++        +   R  + TL N    +   L       +PAL  ++ S
Sbjct: 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGS 245

Query: 155 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 214
             D VL  A   L  L         AV  AG   ++V LL   +   L      +  +  
Sbjct: 246 PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 305

Query: 215 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 274
           G+      I+       L++++ + Y           +  + +   +   AI+EAG +  
Sbjct: 306 GNQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 364

Query: 275 LVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL 334
           L   L +    + +   W + N +   + +       +G +  L  LL   D  +VT   
Sbjct: 365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAA 420

Query: 335 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL--QSHDNTEIYEKAVKIL 391
             L N+       K              +    G+E +     ++ D  +I E A+  L
Sbjct: 421 GILSNLTCNNYKNK------------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  245 bits (627), Expect = 5e-74
 Identities = 60/360 (16%), Positives = 126/360 (35%), Gaps = 20/360 (5%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSP 91
           V  +AA  +  ++   +    ++     V   VR + +  D +        L N++    
Sbjct: 166 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS-HHR 224

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALER 150
           +    +  +G + P L         S+L +A  TL N    +    +  +    L  +  
Sbjct: 225 EGLLAIFKSGGI-PALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 283

Query: 151 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 210
           L++  + + L      L  L+ G  +    ++ +G    LV ++R  +   L+     V 
Sbjct: 284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343

Query: 211 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 270
            +++        I+    +  L   LT    + + +   WT+ N++     Q       G
Sbjct: 344 KVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATKQEG---MEG 399

Query: 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL--NCPDPR 328
           ++G LV LL + +  +   AA  +SN T   + +    +   G I+ L   +        
Sbjct: 400 LLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNKMMVCQVGGIEALVRTVLRAGDRED 458

Query: 329 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 388
           I    +  L ++    +  +         +   A+    GL  +  L    +     KA 
Sbjct: 459 ITEPAICALRHLTSRHQDAE---------MAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 509

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  235 bits (600), Expect = 4e-70
 Identities = 65/395 (16%), Positives = 121/395 (30%), Gaps = 44/395 (11%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD-VREQAVWALGNVAGDSP 91
                   L  +A G  E+  +++  G     V ++ + T + +       L  ++    
Sbjct: 292 FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-S 350

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151
             +  ++  G +   L          +++N  WTL N      +         L  L +L
Sbjct: 351 SNKPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQL 407

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTV 209
           + S+D  V+T A   LS L+         V + G    LV  +        +  PA+  +
Sbjct: 408 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467

Query: 210 GNIVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 266
            ++ +      M    +  H  LP ++ LL          +A   +    A        +
Sbjct: 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPL 526

Query: 267 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--------------------SNEQI 306
            E G I  LV LL+ A  + ++  +   +                               
Sbjct: 527 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNR 586

Query: 307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 366
             +     I     LL  P   I  V    L  + +  EA             A+AI+  
Sbjct: 587 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-------------AEAIEAE 633

Query: 367 EGLEKIENLQSHDNTEIYEKAVKILETYWVEEDED 401
                +  L    N  +   A  +L     ++ +D
Sbjct: 634 GATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  210 bits (536), Expect = 4e-61
 Identities = 62/373 (16%), Positives = 118/373 (31%), Gaps = 41/373 (10%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +     W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K
Sbjct: 376 LVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432

Query: 93  CRDLVLSNGALMPLLAQ-FNEHAKLSMLRNATWTLSNFCRG----KPQPLFEQTRPALPA 147
            + +V   G +  L+        +  +   A   L +        +      +    LP 
Sbjct: 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPV 492

Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           + +L+H      L  A   L             + E G  PRLV+LL             
Sbjct: 493 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552

Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 267
                   + ++ + I+                      EAC    +I A +++    I 
Sbjct: 553 GGTQQQFVEGVRMEEIV----------------------EACTGALHILARDIHNRIVIR 590

Query: 268 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
               I   V LL +    I++ AA  +         E  + + ++G   PL +LL+  + 
Sbjct: 591 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNE 648

Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
            + T     L  + +    +        V L          L + E +  ++  ++    
Sbjct: 649 GVATYAAAVLFRMSEDKPQDYKKR--LSVELT-------SSLFRTEPMTWNETGDLGLDI 699

Query: 388 VKILETYWVEEDE 400
               E     +D+
Sbjct: 700 GAQGEPLGYRQDD 712

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  118 bits (296), Expect = 1e-28
 Identities = 38/262 (14%), Positives = 91/262 (34%), Gaps = 23/262 (8%)

Query: 131 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 190
            G   P  +        ++RL  +   ++L  A   L       N +  A +     P L
Sbjct: 104 EGMQIPSTQFDSAHPTNVQRL--AEPSQMLKHAVVNL------INYQDDAELATRAIPEL 155

Query: 191 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 250
            +LL      V+  A   V  +   +  +   + + Q +  ++  +         +    
Sbjct: 156 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSG 215

Query: 251 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV 310
           T+ N++      + AI ++G I  LVN+L +    +   A   + N            + 
Sbjct: 216 TLHNLSHHREGLL-AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNL-LLHQEGAKMAVR 273

Query: 311 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE 370
             G ++ +  LLN  + + + +  + L+ +    +  K              I  + G +
Sbjct: 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK------------LIILASGGPQ 321

Query: 371 K-IENLQSHDNTEIYEKAVKIL 391
             +  ++++   ++     ++L
Sbjct: 322 ALVNIMRTYTYEKLLWTTSRVL 343

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  268 bits (687), Expect = 4e-89
 Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 2/197 (1%)

Query: 144 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
            LP + + ++S D + L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 204 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 263
            AL  + NI +G + Q Q +I+  ALP L+ LL  +  + I +EA W +SNI +G   QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 264 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 323
           QA+I+AG +  LV LL +   +I +EA WA+SN  SGG NEQ + +   G ++ L  L +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190

Query: 324 CPDPRIVTVCLEGLENI 340
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  170 bits (434), Expect = 3e-51
 Identities = 74/267 (27%), Positives = 112/267 (41%), Gaps = 85/267 (31%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
               A   L+ IASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +
Sbjct: 28  ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
               V+  GAL  L+                                          +L+
Sbjct: 88  QIQAVIDAGALPALV------------------------------------------QLL 105

Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
            S ++++L +A WALS ++ G N++IQAVI+AG  P LV+LL  P+  +           
Sbjct: 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI----------- 154

Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 272
                                            +EA W +SNI +G   Q QA+ EAG +
Sbjct: 155 --------------------------------LQEALWALSNIASGGNEQKQAVKEAGAL 182

Query: 273 GPLVNLLLNAEFEIKKEAAWAISNATS 299
             L  L  +   +I+KEA  A+    S
Sbjct: 183 EKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  135 bits (342), Expect = 9e-38
 Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 42/183 (22%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
            +  EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151
           +    V+  G                                          ALPAL +L
Sbjct: 129 EQIQAVIDAG------------------------------------------ALPALVQL 146

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           + S ++++L +A WALS ++ G N++ QAV EAG   +L +L  H +  +   A   +  
Sbjct: 147 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206

Query: 212 IVT 214
           + +
Sbjct: 207 LQS 209

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  231 bits (590), Expect = 1e-72
 Identities = 56/300 (18%), Positives = 103/300 (34%), Gaps = 24/300 (8%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-----------DVREQAVW 81
               A   L  + S   E+   + + G +     LL    +            +R  A  
Sbjct: 48  QICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM 106

Query: 82  ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 141
           AL N+       +  + S    M  L    +     + +     L N          +  
Sbjct: 107 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL 166

Query: 142 R--PALPALERL-IHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHP 197
           R   ++ AL    +    +  L     AL  LS   T +K       G    LV  L + 
Sbjct: 167 REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 226

Query: 198 SPSVLIP-------ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 250
           S +  +         LR V +++  ++   Q +  +  L  LL  L +++  +I   AC 
Sbjct: 227 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACG 285

Query: 251 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV 310
           T+ N++A N    +A+ + G +  L NL+ +    I   +A A+ N  +    +     +
Sbjct: 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANI 345

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  207 bits (527), Expect = 3e-63
 Identities = 55/325 (16%), Positives = 108/325 (33%), Gaps = 23/325 (7%)

Query: 49  SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA 108
           +           +      + +P +     AV  L  ++ D  + R  +   G L  +  
Sbjct: 22  TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAE 80

Query: 109 ----------QFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSND 156
                       N+H  +++ R A   L+N   G           +  + AL   + S  
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140

Query: 157 DEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPS-PSVLIPALRTVGNI-V 213
           +++       L  LS   +   +  + E G    L+E        S L   L  + N+  
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200

Query: 214 TGDDMQTQCIINHQALPCLLDLLT---QNYKKSIKKEACWTISNIT---AGNVNQIQAII 267
              + +        AL  L+  LT   Q    +I +     + N++   A N +  Q + 
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260

Query: 268 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
           E   +  L+  L +    I   A   + N ++  + +  + L   G +  L +L++    
Sbjct: 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RNPKDQEALWDMGAVSMLKNLIHSKHK 319

Query: 328 RIVTVCLEGLENILKAGEAEKNMGN 352
            I       L N++    A+    N
Sbjct: 320 MIAMGSAAALRNLMANRPAKYKDAN 344

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 73.7 bits (181), Expect = 1e-14
 Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 14/148 (9%)

Query: 205 ALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 263
            L  +  I    +        +   +    + +     +     A   +  ++    ++ 
Sbjct: 9   MLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPM-PAPVEHQICPAVCVLMKLSFDEEHR- 66

Query: 264 QAIIEAGIIGPLVNLL-----------LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ 312
            A+ E G +  +  LL            +    +++ A  A++N T G    +      +
Sbjct: 67  HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126

Query: 313 GCIKPLCDLLNCPDPRIVTVCLEGLENI 340
           GC++ L   L      +  V    L N+
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNL 154

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  214 bits (545), Expect = 7e-65
 Identities = 63/437 (14%), Positives = 124/437 (28%), Gaps = 70/437 (16%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
             Q   A+ + +         + V   G +   V LL SP  +V++ A  AL N+   S 
Sbjct: 17  KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151
             +        +   ++         + +  T  L N          E    ALP L   
Sbjct: 77  TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADR 135

Query: 152 I----------------HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 195
           +                   D EV  +A   L  LS     +      +G+   L+  ++
Sbjct: 136 VIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQ 195

Query: 196 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 255
           +   +           +    ++  +           L+   +N         C++  + 
Sbjct: 196 NCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSD 255

Query: 256 TAGNVNQIQAI-------------IEAGIIGPLVNLLLNAEFEIKKEAA-WAISNATSGG 301
              N N    +               +  I   +NL+  ++ +   EA   A+ N T+  
Sbjct: 256 KMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315

Query: 302 SN----EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVN 357
                       + +  +  +  LL   +  +V      L N+ +     + MGN     
Sbjct: 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPE 375

Query: 358 L----------------------------------FAQAIDDAEGLEKIENL-QSHDNTE 382
           +                                   A+    +  L  I NL +S  + +
Sbjct: 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPK 435

Query: 383 IYEKAVKILETYWVEED 399
             E A  +L   W  ++
Sbjct: 436 AAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  102 bits (256), Expect = 4e-24
 Identities = 45/364 (12%), Positives = 98/364 (26%), Gaps = 43/364 (11%)

Query: 61  VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 120
           +P  V+ LSS  +  +    + + +        +  V   G +  L+         ++ +
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQQ 62

Query: 121 NATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 178
            A   L N        +    +      A+  L  + + E+       L  LS    D++
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS--TDEL 120

Query: 179 QAVIEAGVCPRLVELLRHP----------------SPSVLIPALRTVGNIVTGDDMQTQC 222
           +  + A   P L + +  P                 P V   A   + N+ + D  +   
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 223 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA 282
                 +  L+  +      +  +    ++ N      N    +                
Sbjct: 181 RNYSGLIDSLMAYV--QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 283 EFEIKKEAAWAISN--------------ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 328
               +K +    SN                   + +   +L     I+   +L+      
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298

Query: 329 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 388
                  G    L A +            +        +GL +I  L    N+++     
Sbjct: 299 ATLEACAGALQNLTASKGLM------SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGA 352

Query: 389 KILE 392
            +L 
Sbjct: 353 SLLS 356

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 99.5 bits (247), Expect = 6e-23
 Identities = 37/230 (16%), Positives = 79/230 (34%), Gaps = 25/230 (10%)

Query: 143 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL 202
             +P   + + S D++      + + +         Q V + G   +LV+LLR P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 203 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 262
             A   + N+V               +   + LL +     I+K+    + N+++ +   
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL- 120

Query: 263 IQAIIEAGIIGPLVNLLL----------------NAEFEIKKEAAWAISNATSGGSNEQI 306
            +  + A  +  L + ++                  + E+   A   + N +S  +  + 
Sbjct: 121 -KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG-RQ 178

Query: 307 KFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKAGEAEKNM 350
                 G I  L   +         D + V  C+  L N+    +AE   
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 84.9 bits (209), Expect = 5e-18
 Identities = 34/309 (11%), Positives = 85/309 (27%), Gaps = 25/309 (8%)

Query: 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALERLIHSNDD 157
           G  +P   Q+             + + + C       Q +++     +  L  L+ S + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQ 58

Query: 158 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGD 216
            V   A  AL  L   +                V LLR   +  +       + N+ + D
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 217 DMQTQCIINHQALPCLLDLL---------------TQNYKKSIKKEACWTISNITAGNVN 261
           +++ +  +   ALP L D +                +     +   A   + N+++ +  
Sbjct: 119 ELKEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176

Query: 262 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 321
           +      +G+I  L+  + N     + +     +      +             + L   
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236

Query: 322 LNCPDPRI-VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSHD 379
                     T C     + +     +  +         +  +  ++ +   +  +    
Sbjct: 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK 296

Query: 380 NTEIYEKAV 388
                E   
Sbjct: 297 KDATLEACA 305

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  207 bits (527), Expect = 4e-62
 Identities = 61/296 (20%), Positives = 106/296 (35%), Gaps = 26/296 (8%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-----------DVREQAVW 81
               A   L  + S   E+   + + G +     LL    +            +R  A  
Sbjct: 164 QICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM 222

Query: 82  ALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140
           AL N+  GD      L    G +  L+AQ        + +     L N          + 
Sbjct: 223 ALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKT 281

Query: 141 TR--PALPAL-ERLIHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRH 196
            R   ++ AL E  +    +  L     AL  LS   T +K       G    LV  L +
Sbjct: 282 LREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341

Query: 197 PSPSVLIP-------ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 249
            S +  +         LR V +++  ++   Q +  +  L  LL  L +++  +I   AC
Sbjct: 342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNAC 400

Query: 250 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 305
            T+ N++A N    +A+ + G +  L NL+ +    I   +A A+ N  +    + 
Sbjct: 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  182 bits (462), Expect = 1e-52
 Identities = 59/353 (16%), Positives = 116/353 (32%), Gaps = 47/353 (13%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPI------------------------FVRLL 68
            +  A+ AL NI     ++ R   +   + +                            +
Sbjct: 98  ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPM 157

Query: 69  SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL----------AQFNEHAKLSM 118
            +P +     AV  L  ++ D  + R  +   G L  +              N+H  +++
Sbjct: 158 PAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 216

Query: 119 LRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 176
            R A   L+N   G    +      +  + AL   + S  +++       L  LS   + 
Sbjct: 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 276

Query: 177 KIQAVI-EAGVCPRLVELLRHPS-PSVLIPALRTVGNI-VTGDDMQTQCIINHQALPCLL 233
             +  + E G    L+E        S L   L  + N+     + +        AL  L+
Sbjct: 277 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336

Query: 234 DLLT---QNYKKSIKKEACWTISNIT---AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 287
             LT   Q    +I +     + N++   A N +  Q + E   +  L+  L +    I 
Sbjct: 337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 396

Query: 288 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 340
             A   + N ++  + +  + L   G +  L +L++     I       L N+
Sbjct: 397 SNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  119 bits (300), Expect = 7e-30
 Identities = 52/330 (15%), Positives = 100/330 (30%), Gaps = 66/330 (20%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD------------VREQAV 80
            + + +  L  + S + ++   +   G +P+ ++LL     D             R +A 
Sbjct: 45  DKDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS 103

Query: 81  WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140
            AL N+    P  +        L  LL Q   +                C        E 
Sbjct: 104 AALHNIIHSQPDDKRGRREIRVL-HLLEQIRAY-------------CETCWE----WQEA 145

Query: 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 200
             P +   +  + +  +  +  A   L  LS     +  A+ E G    + ELL+     
Sbjct: 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEM 204

Query: 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260
                                             L   +Y  ++++ A   ++N+T G+V
Sbjct: 205 --------------------------------YGLTNDHYSITLRRYAGMALTNLTFGDV 232

Query: 261 NQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 319
                +    G +  LV  L +   ++++  A  + N +        K L   G +K L 
Sbjct: 233 ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 292

Query: 320 DLL-NCPDPRIVTVCLEGLENILKAGEAEK 348
           +          +   L  L N+       K
Sbjct: 293 ECALEVKKESTLKSVLSALWNLSAHCTENK 322

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  112 bits (282), Expect = 2e-27
 Identities = 35/201 (17%), Positives = 76/201 (37%), Gaps = 14/201 (6%)

Query: 33  VQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDD-VREQAVWALGNVAGDS 90
           +Q   A  L N++     N++  + + G+V   +        +   +  + AL N++   
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318

Query: 91  P-KCRDLVLSNGALMPL---LAQFNEHAKLSMLRNATWTLSN---FCRGKP---QPLFEQ 140
                D+   +GAL  L   L   ++   L+++ +    L N            Q L E 
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378

Query: 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 200
               L  L + + S+   ++++AC  L  LS       +A+ + G    L  L+      
Sbjct: 379 --NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 436

Query: 201 VLIPALRTVGNIVTGDDMQTQ 221
           + + +   + N++     + +
Sbjct: 437 IAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 86.2 bits (213), Expect = 2e-18
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 32  AVQFEAAWALTNIAS---GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 88
           A+       L N++S      ++ +++ ++  +   ++ L S +  +   A   L N++ 
Sbjct: 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408

Query: 89  DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 135
            +PK ++ +   GA+  L           +   +   L N    +P 
Sbjct: 409 RNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPA 454

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  191 bits (486), Expect = 3e-55
 Identities = 69/425 (16%), Positives = 138/425 (32%), Gaps = 65/425 (15%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA-GDS 90
           AV+  AA  L ++     +    V     +P+ V LL  P  +V   A  AL N++ G  
Sbjct: 63  AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122

Query: 91  PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 150
              +  + +   +  L+    +   + +    T TL N          E    AL AL  
Sbjct: 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWN-LSSHDSIKMEIVDHALHALTD 181

Query: 151 LI------------------HSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLV 191
            +                  H   + VLT+    L  +S   ++  + + E  G+   L+
Sbjct: 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALI 241

Query: 192 ELLRH-------------------------------PSPSVLIPALRTVGNIVTGDDMQT 220
            +++                                 +      A     N  T      
Sbjct: 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGY 301

Query: 221 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI----QAIIEAGIIGPLV 276
           + +   + +   + LL ++   +I + +   I N+ AG          A+ +   +  + 
Sbjct: 302 ELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361

Query: 277 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG 336
           +LL N    + K A+ A+ N      + + K L+ +  I  L   L            E 
Sbjct: 362 DLLTNEHERVVKAASGALRNLA---VDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSE- 417

Query: 337 LENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTE--IYEKAVKILETY 394
            + ++        +         A+ + + +G+EK+  +    N        A  +L+T 
Sbjct: 418 -DTVISILNTINEV--IAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474

Query: 395 WVEED 399
           W  ++
Sbjct: 475 WGYKE 479

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  111 bits (279), Expect = 8e-27
 Identities = 55/315 (17%), Positives = 107/315 (33%), Gaps = 42/315 (13%)

Query: 116 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 175
               R +  +L +  +G P P   + +P LP +  ++    D V ++A   L +L    +
Sbjct: 22  AQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80

Query: 176 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC-IINHQALPCLLD 234
                V +    P LV LL HP   V + A   + NI  G D   +  I N   +P L+ 
Sbjct: 81  KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140

Query: 235 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------------ 282
           LL +     + +    T+ N+++ +  +++ +  A  +  L + ++              
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA--LHALTDEVIIPHSGWEREPNEDC 198

Query: 283 ------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL------NCPDPRIV 330
                    +    A  + N +S  S  + K     G +  L  ++         D ++V
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258

Query: 331 TVCLEGLENILKAGEAEKNMGN-------------TGGVNLFAQAIDDAEGLEK-IENLQ 376
             C+  L N+      E                          + +   E +   I  L+
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318

Query: 377 SHDNTEIYEKAVKIL 391
                 I E +   +
Sbjct: 319 ESKTPAILEASAGAI 333

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 98.5 bits (244), Expect = 3e-22
 Identities = 57/377 (15%), Positives = 115/377 (30%), Gaps = 35/377 (9%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
            Q E     +  +               +P  + +L    D V+  A   L ++   + K
Sbjct: 22  AQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDK 81

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP--LFEQTRPALPALER 150
            +  V     +  L+   +   K  +   A   L N   G+ Q   +  +    +PAL R
Sbjct: 82  VKTDVRKLKGIPVLVGLLDHPKK-EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140

Query: 151 LI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 209
           L+  + D ++       L  LS   + K++ V  A     L + +  P            
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHAL--HALTDEVIIPHSGWEREPNEDC 198

Query: 210 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC--------WTISNITAGNVN 261
                         +      CL ++ ++  +   K   C        + +        +
Sbjct: 199 KPRHIEW-----ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDS 253

Query: 262 QIQAIIEAGIIGPLVNLLLNAEFEI-----KKEAAWAISNATSGGSNEQIKFLVSQGCIK 316
             + +     +  L NL      EI      +EAA  ++N T        + L     ++
Sbjct: 254 DSKLVENC--VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVR 311

Query: 317 PLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL 375
               LL     P I+      ++N+                     A+   + L  I +L
Sbjct: 312 IYISLLKESKTPAILEASAGAIQNLCAGRWTYGRY--------IRSALRQEKALSAIADL 363

Query: 376 QSHDNTEIYEKAVKILE 392
            ++++  + + A   L 
Sbjct: 364 LTNEHERVVKAASGALR 380

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  170 bits (433), Expect = 3e-50
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 5/193 (2%)

Query: 59  GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 118
           G   +  R L +    +R +A   +G  + +    ++ VL  GAL  LL   +  A  ++
Sbjct: 82  GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTV 141

Query: 119 LRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 176
              A + +S   R +      F +       L R +     ++   + + L  L  G  +
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE 200

Query: 177 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 236
               +   G+  +LV L+R          L  + ++VT      +     +    L +LL
Sbjct: 201 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELL 258

Query: 237 TQNYKKSIKKEAC 249
               +   + E  
Sbjct: 259 RHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  148 bits (375), Expect = 1e-41
 Identities = 42/263 (15%), Positives = 94/263 (35%), Gaps = 8/263 (3%)

Query: 141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 200
           ++P  P       + D +    A   L+ L +  ++       +G+   +   L   +  
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260
           +   A + +G          + ++   AL  LL LL ++   +++ +A + IS +     
Sbjct: 98  LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 320
             +   +       L+  +     ++K ++A+ + N    G  E    L S G ++ L  
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV-GHPEHKGTLCSMGMVQQLVA 216

Query: 321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD- 379
           L+           L  L +++              + L  + +       + + LQ H+ 
Sbjct: 217 LVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL-EELLR-----HRCQLLQQHEE 270

Query: 380 NTEIYEKAVKILETYWVEEDEDE 402
             E  E   K+L+T +    +D 
Sbjct: 271 YQEELEFCEKLLQTCFSSPADDS 293

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 97.4 bits (242), Expect = 5e-23
 Identities = 28/227 (12%), Positives = 67/227 (29%), Gaps = 6/227 (2%)

Query: 55  VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA 114
           V+     P       +     RE A+  L ++  +     D       +  L+ ++ E  
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFC-QLSGMHLLVGRYLEAG 94

Query: 115 KLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 172
              +   A   +    +     Q            L  L     D V   A +A+S L  
Sbjct: 95  AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154

Query: 173 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL 232
                +   +       L+  ++     + + +   + N++ G       + +   +  L
Sbjct: 155 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214

Query: 233 LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 279
           + L+ +       +     + ++       ++   E  +   L  LL
Sbjct: 215 VALV-RTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEELL 258

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 79.3 bits (195), Expect = 9e-17
 Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 1/133 (0%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
            V+ +A +A++ +           +      + +R +      ++ ++ + L N+    P
Sbjct: 140 TVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP 199

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151
           + +  + S G +   L             +    L +     PQ + E   P L   E L
Sbjct: 200 EHKGTLCSMGMV-QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELL 258

Query: 152 IHSNDDEVLTDAC 164
            H        +  
Sbjct: 259 RHRCQLLQQHEEY 271

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  157 bits (398), Expect = 4e-42
 Identities = 59/402 (14%), Positives = 123/402 (30%), Gaps = 60/402 (14%)

Query: 33  VQFEAAWALTNIASGTSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
            +     A+T + +G  +   +VV   G + + + + ++  +  +  A   L   +    
Sbjct: 263 SKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK- 321

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC-----RGKPQPLFEQTRPALP 146
                +   G  + +L +        +   A   L             +P  +     L 
Sbjct: 322 DKAKALCEQG--VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLA 379

Query: 147 ALER---LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 203
              R   +    D ++   A   L+YL+     K + + +      L++L R  + S L 
Sbjct: 380 EACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLY 439

Query: 204 PALRTVGNIVTGDDMQT--------------------------------QCIINHQALPC 231
             + T  N+    + Q                                   + N      
Sbjct: 440 GVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499

Query: 232 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 291
           L  L       + ++     ++ +  G       +++ G +  L+ + L    + K+ A 
Sbjct: 500 LCALAKTES-HNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHAT 557

Query: 292 WAISNATSGGSNE-QIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKN 349
            A++      + E       S   I+PL +LL            L  L N+    E+ + 
Sbjct: 558 QALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR- 616

Query: 350 MGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
                      Q I   +G+ KIE     D+  +   A + L
Sbjct: 617 -----------QRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  151 bits (383), Expect = 5e-40
 Identities = 52/401 (12%), Positives = 123/401 (30%), Gaps = 54/401 (13%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLL------SSPTDDVREQAVWALG 84
            ++  A   L  + S   ++  +     GA                   D+R  A   L 
Sbjct: 345 GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA 404

Query: 85  NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA 144
            +  D  +C++ ++ + A +  L         S L     T  N C    +         
Sbjct: 405 YLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIE 463

Query: 145 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 204
           L    +     + E+            D  N +I  +   G+   L  L +  S +    
Sbjct: 464 LAKFAKQHIPEEHELDDV---------DFINKRITVLANEGITTALCALAKTESHNSQEL 514

Query: 205 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ-- 262
             R +  +    +++ + ++    +  LL +  +  +K  K+ A   ++ I      +  
Sbjct: 515 IARVLNAVCGLKELRGK-VVQEGGVKALLRMALEGTEK-GKRHATQALARIGITINPEVS 572

Query: 263 IQAIIEAGIIGPLVNLLLNAEFEIKK-EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 321
                   +I PL+NLL      ++  E+  A++N  S  +    + ++ +  +  +   
Sbjct: 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS-MNESVRQRIIKEQGVSKIEYY 631

Query: 322 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV------------------------- 356
           L      +     + L N++ + +  K                                 
Sbjct: 632 LMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAI 691

Query: 357 ------NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 391
                     + +  A  L+ +  L ++ +  +  + + I+
Sbjct: 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVII 732

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  148 bits (374), Expect = 7e-39
 Identities = 58/369 (15%), Positives = 112/369 (30%), Gaps = 57/369 (15%)

Query: 43  NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 102
           +     ++   V+ + G       L  + + + +E     L  V G   + R  V+  G 
Sbjct: 479 DDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGG 537

Query: 103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRP--ALPALERLIHSNDDEV 159
           +  LL    E  +    R+AT  L+       P+  F   R    +  L  L+  +   +
Sbjct: 538 VKALLRMALEGTEKGK-RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTAL 596

Query: 160 LT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 218
              ++  AL+ L+       Q +I+     ++   L      +                 
Sbjct: 597 ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYL----------------- 639

Query: 219 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL 278
                                      + A   + N+                +  L  L
Sbjct: 640 --------------------------TRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALL 673

Query: 279 LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 338
             + + E     A A++  TS       K L     +  L  L+  P P +    +  + 
Sbjct: 674 CEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733

Query: 339 NILKAG-EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 397
           N++ AG E  K +  T  + L +       GL ++ +       E+  + +   E Y + 
Sbjct: 734 NMINAGEEIAKKLFETDIMELLS-------GLGQLPDDTRAKAREVATQCLAAAERYRII 786

Query: 398 EDEDEPLPP 406
           E  D    P
Sbjct: 787 ERSDNAEIP 795

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  127 bits (319), Expect = 1e-31
 Identities = 38/268 (14%), Positives = 71/268 (26%), Gaps = 4/268 (1%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN--VAGD 89
             Q   A  L  +  G  E    V+  G V   +R+    T+  +  A  AL    +  +
Sbjct: 510 NSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568

Query: 90  SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR-PALPAL 148
                    S   + PLL    +         +   L+N             +   +  +
Sbjct: 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKI 628

Query: 149 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 208
           E  +  +   +   A   L  L    +              L  L               
Sbjct: 629 EYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGA 688

Query: 209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 268
           +  I +      + I+   +   +L  L  N   +++      I N+        + + E
Sbjct: 689 LAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFE 748

Query: 269 AGIIGPLVNLLLNAEFEIKKEAAWAISN 296
             I+  L  L    +    K    A   
Sbjct: 749 TDIMELLSGLGQLPDDTRAKAREVATQC 776

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  130 bits (327), Expect = 2e-35
 Identities = 34/199 (17%), Positives = 58/199 (29%), Gaps = 19/199 (9%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
           +    AA  + +     SE  + V     +   ++LL    +DV+     AL N+  +  
Sbjct: 25  SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151
             +  V     +  LL    +   L   +  T  L N               AL  L   
Sbjct: 85  DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTEN 143

Query: 152 I----------------HSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELL 194
           I                   D ++  +    L  +S    D  +A+    G+   LV  +
Sbjct: 144 IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYV 203

Query: 195 RHPSPSVLIPALRTVGNIV 213
           R           +   N V
Sbjct: 204 RGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  100 bits (250), Expect = 1e-24
 Identities = 30/204 (14%), Positives = 71/204 (34%), Gaps = 20/204 (9%)

Query: 143 PALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 200
             L     ++ ++      ++ A   + +     ++  + V +     +L++LL+  +  
Sbjct: 8   MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67

Query: 201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 260
           V       + N+V  D+     +     +P LL +L Q      KK+    + N+++ + 
Sbjct: 68  VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127

Query: 261 NQIQAIIEAGIIGPLVNLLL----------------NAEFEIKKEAAWAISNATSGGSNE 304
            +   I EA  +  L   ++                  +F+I       + N +S G++ 
Sbjct: 128 LKNLMITEA--LLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG 185

Query: 305 QIKFLVSQGCIKPLCDLLNCPDPR 328
           +       G I  L   +      
Sbjct: 186 RKAMRRCDGLIDSLVHYVRGTIAD 209

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 80.4 bits (198), Expect = 2e-17
 Identities = 35/256 (13%), Positives = 75/256 (29%), Gaps = 64/256 (25%)

Query: 61  VPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 118
           +   V +L +          A   + +      + R  V     ++ LL           
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQ---------- 59

Query: 119 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 178
                                           L+   +++V    C AL  L    ND  
Sbjct: 60  --------------------------------LLKVQNEDVQRAVCGALRNLVFEDNDNK 87

Query: 179 QAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 237
             V E    PRL+++L+              + N+ + D ++   ++  +AL  L + + 
Sbjct: 88  LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN--LMITEALLTLTENII 145

Query: 238 QNYKK---------------SIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLN 281
             +                  I       + N+++   +  +A+    G+I  LV+ +  
Sbjct: 146 IPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRG 205

Query: 282 AEFEIKKEAAWAISNA 297
              + + +   A  N 
Sbjct: 206 TIADYQPDDK-ATENC 220

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 21/137 (15%)

Query: 258 GNVNQIQAIIEAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 315
           G+   ++  +E       V++L   +        AA  I +      +E  K +     I
Sbjct: 1   GSNADMEMTLE-----RAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGI 54

Query: 316 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IEN 374
             L  LL   +  +       L N+       ++  N          + +  G+ + ++ 
Sbjct: 55  LKLLQLLKVQNEDVQRAVCGALRNL-----VFEDNDNK-------LEVAELNGVPRLLQV 102

Query: 375 LQSHDNTEIYEKAVKIL 391
           L+   + E  ++   +L
Sbjct: 103 LKQTRDLETKKQITGLL 119

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 85.1 bits (210), Expect = 6e-19
 Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 21/181 (11%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +  E A A   +A    E  + +I     P+         +  +    +AL  +A  +P 
Sbjct: 86  LTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVSYALEEIAKANPM 140

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
               ++ +   M +L+  N   KL+ L      +        + +     P LP +  L+
Sbjct: 141 LMASIVRD--FMSMLSSKNREDKLTAL----NFIEAMGENSFKYV----NPFLPRIINLL 190

Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
           H  D+ V   A  AL +L+   +   + VI      + +E L   S  V       +  +
Sbjct: 191 HDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRL 244

Query: 213 V 213
           +
Sbjct: 245 L 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 75.1 bits (184), Expect = 2e-15
 Identities = 27/186 (14%), Positives = 62/186 (33%), Gaps = 19/186 (10%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
            V   A   +  IA    +    ++      +F  L  S    + ++   A G +A + P
Sbjct: 47  TVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151
           +         +++P+L             N ++ L    +  P          +     +
Sbjct: 103 ELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSM 152

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           + S + E    A   +  + + +   +   +     PR++ LL      V   A+  + +
Sbjct: 153 LSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHDGDEIVRASAVEALVH 207

Query: 212 IVTGDD 217
           + T +D
Sbjct: 208 LATLND 213

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 72.4 bits (177), Expect = 1e-14
 Identities = 30/236 (12%), Positives = 76/236 (32%), Gaps = 26/236 (11%)

Query: 60  AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 119
            +   + LL      V + A+  +  +A          L    L  L +   +   + + 
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKKSEAIPLT 87

Query: 120 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 179
           +          + KP    E  +  +P L       D++   +  +AL  ++      + 
Sbjct: 88  QEIAKAFGQMAKEKP----ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 239
           +++        + +L   +    + AL  +  +                LP +++LL  +
Sbjct: 144 SIVRD-----FMSMLSSKNREDKLTALNFIEAMGENSFKYVN-----PFLPRIINLL-HD 192

Query: 240 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 295
             + ++  A   + ++   N    + +I+       +  L +    + K     IS
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGIS 242

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 74.5 bits (183), Expect = 3e-15
 Identities = 43/307 (14%), Positives = 85/307 (27%), Gaps = 68/307 (22%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
            +  +A  L                  AV + +   S      R+   + LG +     K
Sbjct: 39  KRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQI-KICKK 86

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
           C D V +      L           +   A  + +  C+  P    +     +   +   
Sbjct: 87  CEDNVFN-----ILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK----IVEQSQITA 137

Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
                 V     +A+S ++D               P L+ LL+ P+  V   A   +   
Sbjct: 138 FDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININ 186

Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 272
              +              C +++L     + ++ EA   +S      V           +
Sbjct: 187 KYDNS---------DIRDCFVEMLQDKN-EEVRIEAIIGLSYRKDKRV-----------L 225

Query: 273 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-NCPDPRIVT 331
             L + L      +  +   A               L  +  +  L  +L    D  I+T
Sbjct: 226 SVLCDELKKN--TVYDDIIEAAGE------------LGDKTLLPVLDTMLYKFDDNEIIT 271

Query: 332 VCLEGLE 338
             ++ L+
Sbjct: 272 SAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 74.1 bits (182), Expect = 5e-15
 Identities = 45/361 (12%), Positives = 87/361 (24%), Gaps = 89/361 (24%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
            + +A+                           RLL       R  +   L    G    
Sbjct: 6   QKRKASKEYGLYNQCKKL---------NDDELFRLLDDHNSLKRISSARVLQLRGGQ--- 53

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
                      + L  +F             + L        +   +     L      +
Sbjct: 54  ---------DAVRLAIEFCSDKNYIRRDIGAFILGQI--KICKKCEDNVFNIL--NNMAL 100

Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
           +     V   A  + +            ++E              S +V       +  I
Sbjct: 101 NDKSACVRATAIESTAQRCKKNPIYSPKIVEQ-----SQITAFDKSTNVRRATAFAISVI 155

Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 272
              D            +P L++LL ++    ++  A + I+     N         + I 
Sbjct: 156 --NDK---------ATIPLLINLL-KDPNGDVRNWAAFAININKYDN---------SDIR 194

Query: 273 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 332
              V +L +   E++ EA   +S                +  +  LCD L      +   
Sbjct: 195 DCFVEMLQDKNEEVRIEAIIGLSY------------RKDKRVLSVLCDELK--KNTVYDD 240

Query: 333 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN-LQSHDNTEIYEKAVKIL 391
            +E                           + D   L  ++  L   D+ EI   A+  L
Sbjct: 241 IIEAAG-----------------------ELGDKTLLPVLDTMLYKFDDNEIITSAIDKL 277

Query: 392 E 392
           +
Sbjct: 278 K 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 31/222 (13%), Positives = 60/222 (27%), Gaps = 49/222 (22%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
            V+  A  +              +     V          + +VR    +A+  +     
Sbjct: 106 CVRATAIESTAQRCK-----KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK-- 158

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151
                     A +PLL    +     +   A + ++                       +
Sbjct: 159 ----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSD--------IRDCFVEM 200

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           +   ++EV  +A   LSY  D      + V+       L + L+    +V    +   G 
Sbjct: 201 LQDKNEEVRIEAIIGLSYRKD------KRVLSV-----LCDELKK--NTVYDDIIEAAGE 247

Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 253
           +  GD            LP L  +L +     I   A   + 
Sbjct: 248 L--GDK---------TLLPVLDTMLYKFDDNEIITSAIDKLK 278

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 66.6 bits (163), Expect = 6e-13
 Identities = 42/249 (16%), Positives = 79/249 (31%), Gaps = 56/249 (22%)

Query: 57  DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 116
           D   V ++++ L   +  VR  A +ALG +     +  +       L+  L    +    
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--DERAVE------PLIKAL----KDEDA 64

Query: 117 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 176
            + R A   L                 A+  L + +   D  V   A  AL  + D    
Sbjct: 65  WVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 177 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 236
             +  +E      L++ L+     V I A   +G I  GD+         +A+  L+  L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 237 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 296
            ++    +++ A   +  I  G            +   +  L        +K A   +  
Sbjct: 153 -KDEDGWVRQSAADALGEI--GG---------ERVRAAMEKLAETGTGFARKVAVNYLET 200

Query: 297 ATSGGSNEQ 305
             S   +  
Sbjct: 201 HKSFNHHHH 209

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 42/231 (18%), Positives = 72/231 (31%), Gaps = 56/231 (24%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
            V+  AA+AL  I            D  AV   ++ L      VR  A  ALG +  +  
Sbjct: 34  YVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRRAAADALGQIGDER- 81

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151
                     A+ PL+    +     + ++A   L                 A+  L + 
Sbjct: 82  ----------AVEPLIKAL-KDEDGWVRQSAAVALGQI----------GDERAVEPLIKA 120

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           +   D  V   A +AL  + D      +AV        L++ L+     V   A   +G 
Sbjct: 121 LKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDEDGWVRQSAADALGE 169

Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 262
           I  G +         +    +  L  +      +K A   +    + N + 
Sbjct: 170 I--GGE---------RVRAAMEKLA-ETGTGFARKVAVNYLETHKSFNHHH 208

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 56/235 (23%)

Query: 60  AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 119
            V ++++ L   +  VR  A +ALG +     +  +       L+  L    +     + 
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKIG--DERAVE------PLIKAL----KDEDAWVR 62

Query: 120 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 179
           R A   L                 A+  L + +   D  V   A  AL  + D      +
Sbjct: 63  RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD------E 106

Query: 180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 239
             +E      L++ L+     V I A   +G I  GD+         +A+  L+  L ++
Sbjct: 107 RAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL-KD 149

Query: 240 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 294
               +++ A   +  I        + +  A     +  L        +K A   +
Sbjct: 150 EDGWVRQSAADALGEI------GGERVRAA-----MEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 60.0 bits (146), Expect = 9e-11
 Identities = 40/224 (17%), Positives = 69/224 (30%), Gaps = 56/224 (25%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
            V+  AA+AL  I            D  AV   ++ L      VR  A  ALG +  +  
Sbjct: 29  YVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRRAAADALGQIGDER- 76

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151
                     A+ PL+    +     + ++A   L                 A+  L + 
Sbjct: 77  ----------AVEPLIKAL-KDEDGWVRQSAAVALGQI----------GDERAVEPLIKA 115

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           +   D  V   A +AL  + D      +  +E      L++ L+     V   A   +G 
Sbjct: 116 LKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDEDGWVRQSAADALGE 164

Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 255
           I  G +         +    +  L  +      +K A   +   
Sbjct: 165 I--GGE---------RVRAAMEKLA-ETGTGFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 35/263 (13%), Positives = 72/263 (27%), Gaps = 68/263 (25%)

Query: 78  QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 137
           +      +                 +   +    +     + R A + L           
Sbjct: 2   RGSHHHHHHTDPE-----------KVEMYIKNL-QDDSYYVRRAAAYALGKI-------- 41

Query: 138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 197
                 A+  L + +   D  V   A  AL  + D      +  +E      L++ L+  
Sbjct: 42  --GDERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP-----LIKALKDE 88

Query: 198 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 257
              V   A   +G I  GD+         +A+  L+  L       ++  A + +  I  
Sbjct: 89  DGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDEDW-FVRIAAAFALGEIGD 136

Query: 258 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP 317
                         + PL+  L + +  +++ AA A+              +  +     
Sbjct: 137 -----------ERAVEPLIKALKDEDGWVRQSAADALGE------------IGGERVRAA 173

Query: 318 LCDLLNCPDPRIVTVCLEGLENI 340
           +  L          V +  LE  
Sbjct: 174 MEKLAETGTGFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 24/141 (17%), Positives = 39/141 (27%), Gaps = 33/141 (23%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
            V+  AA AL  I            D  AV   ++ L      VR  A +ALG       
Sbjct: 91  WVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFALGE------ 133

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 151
                 + +   +  L +  +     + ++A   L                    A+E+L
Sbjct: 134 ------IGDERAVEPLIKALKDEDGWVRQSAADALGEI----------GGERVRAAMEKL 177

Query: 152 IHSNDDEVLTDACWALSYLSD 172
             +        A   L     
Sbjct: 178 AETGTGFARKVAVNYLETHKS 198

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 62.9 bits (152), Expect = 8e-11
 Identities = 46/306 (15%), Positives = 92/306 (30%), Gaps = 24/306 (7%)

Query: 62  PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 121
           P+   LL      V+E  +  LG +A    +     L    L+P L Q     K  +   
Sbjct: 362 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE--LIPHLIQCLSDKKALVRSI 419

Query: 122 ATWTLSNFCRG-KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 180
             WTLS +      QP     +P +  L + I  ++  V   AC A + L +    ++  
Sbjct: 420 TCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP 479

Query: 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT--GDDMQTQCIINHQALPCLLDLLTQ 238
            +   +   LV          L+     +G +    G  +     I    +P L+     
Sbjct: 480 YLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNM 537

Query: 239 NYKK------------SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 286
              +            S+                 +   +++  +   ++N     ++E 
Sbjct: 538 LKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 597

Query: 287 KKE-----AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 341
             +     A   +S    G      + +     +  +   +    P +       L ++ 
Sbjct: 598 PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLT 657

Query: 342 KAGEAE 347
           KA    
Sbjct: 658 KACFQH 663

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 41/311 (13%), Positives = 90/311 (28%), Gaps = 35/311 (11%)

Query: 102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT 161
            ++PLL +   H +  +  +    L     G  Q +       +P L + +      V +
Sbjct: 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS 418

Query: 162 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 221
             CW LS  +     +        +   L++ +   +  V   A      +    +    
Sbjct: 419 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE---EEACT 475

Query: 222 CIINH--QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 279
            ++ +    L  L+      Y+          I  +     + +       ++ P +   
Sbjct: 476 ELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 534

Query: 280 LNAEFEIKKEAAWAISNATSGGSNEQIKFL-----VSQGCIKPLCDLLN----------- 323
            N   +  K+    +   +S  +  Q  FL     V Q C+  +   L            
Sbjct: 535 WNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ 594

Query: 324 --CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 381
              PD   + V L+ L  + +                  Q +  +  L  +         
Sbjct: 595 YEAPDKDFMIVALDLLSGLAEGLGGN-----------IEQLVARSNILTLMYQCMQDKMP 643

Query: 382 EIYEKAVKILE 392
           E+ + +  +L 
Sbjct: 644 EVRQSSFALLG 654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 41/308 (13%), Positives = 98/308 (31%), Gaps = 26/308 (8%)

Query: 61  VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 120
           +    + +++     RE AV A G++  D P            +P +        L +  
Sbjct: 371 LEFVEQNITADNWRNREAAVMAFGSIM-DGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429

Query: 121 NATWTLSNFCRGKPQPLFEQTR--PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 178
              W +        + +  Q      + A    +  +  +V T+  W +  L +   +  
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEAT 488

Query: 179 QAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 233
            + I       +  L+   +      +    A   +  +V                  ++
Sbjct: 489 PSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVM 547

Query: 234 DLLTQ---NYKKSIKKEACWTISNITAGNVNQIQAIIEAG--IIGPLVNLLLNAEFEI-- 286
           D L Q     +  +  E   ++  + +  +  + A+I      + P+ ++L+   F +  
Sbjct: 548 DKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLE 607

Query: 287 -------KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 339
                  + +  +AIS   +       K+L  +     L   LN  D  +    +  + +
Sbjct: 608 KKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIAD 665

Query: 340 ILKAGEAE 347
           I  + E +
Sbjct: 666 ISNSLEED 673

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 34/244 (13%), Positives = 76/244 (31%), Gaps = 24/244 (9%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-----DVREQAVWALGNVA 87
           V    +W + N+    +E T   I +    +   L+ +        + R  A  AL  + 
Sbjct: 469 VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV 528

Query: 88  GDSPKCRDLVLSNGALMPLLAQF--------------NEHAKLSMLRNATWTLSNFCRGK 133
             +     +  ++ ++   +                  +   L  L++   T+      K
Sbjct: 529 EYATD--TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK 586

Query: 134 PQPLFEQT-RPALPALERLIHSNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLV 191
                E      +    RL+   D   +  D  +A+S L+       +  +E    P L+
Sbjct: 587 SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLL 645

Query: 192 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 251
           + L      V I A+  + +I    +   +   +         +   N ++ +K      
Sbjct: 646 KALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSV 705

Query: 252 ISNI 255
             +I
Sbjct: 706 FGDI 709

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 48/300 (16%), Positives = 93/300 (31%), Gaps = 21/300 (7%)

Query: 62  PIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 120
            I     S+ T   VR  A+ AL +         +       LM ++ +  +   + +  
Sbjct: 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQA 242

Query: 121 NATWTLSNFCRGKPQPLFEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQ 179
            A   L          +      AL AL    + S +D+V +      S + +   D   
Sbjct: 243 AAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAY 302

Query: 180 AVIEAGVCPRLVELLRHPSPSVLIPALR---TVGNIVTGDDMQTQCIINHQAL------- 229
            + +    P         S   ++P L    T  N    DD     +     L       
Sbjct: 303 ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC 362

Query: 230 -----PCLLDLLTQNYKKS---IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 281
                  +L+ + QN        ++ A     +I  G     +       +  ++NL+ +
Sbjct: 363 GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND 422

Query: 282 AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 341
              ++K+  AW I       +          G ++     L    P++ T C   + N++
Sbjct: 423 QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ-DHPKVATNCSWTIINLV 481

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 57.3 bits (138), Expect = 5e-09
 Identities = 57/363 (15%), Positives = 115/363 (31%), Gaps = 38/363 (10%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           V+  AA  L   A     +    +    +P+F  L S   D VR  AV A  N+A    +
Sbjct: 180 VRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLAVEACVNIA----Q 232

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
                     +MP L Q  E     +        +   +     + +     +PA + L+
Sbjct: 233 LLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTD--LVPAFQNLM 290

Query: 153 HSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
              + EV   A   +    +  + D  + VI + + P + EL+   +  V       +  
Sbjct: 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350

Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAG 270
           +          +     +  LL L     K    +     ISN+     V  I+ + ++ 
Sbjct: 351 LS-------PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS- 402

Query: 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 330
           ++  +V L  +A++ ++      +         E     ++  C+  L D        I 
Sbjct: 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD----HVYAIR 458

Query: 331 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 390
                 L+ +++                F +    A  + K+  +    N       +  
Sbjct: 459 EAATSNLKKLVEK---------------FGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503

Query: 391 LET 393
           +  
Sbjct: 504 INV 506

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 47/308 (15%), Positives = 90/308 (29%), Gaps = 24/308 (7%)

Query: 61  VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 120
           + + +  L +    +R  ++  L  +A        +  +   L+P L          +L 
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIA----LALGVERTRSELLPFLTDTIYDED-EVLL 66

Query: 121 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 180
                L  F      P +      LP LE L    +  V   A  +L  +S   +     
Sbjct: 67  ALAEQLGTFTTLVGGPEYVH--CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-- 122

Query: 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 240
            +EA   P +  L      +    A               +  +         +L   + 
Sbjct: 123 -LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL----RQYFRNLC-SDD 176

Query: 241 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 300
              +++ A   +              +++ II    NL  + +  ++  A  A  N    
Sbjct: 177 TPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233

Query: 301 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA 360
              E ++ LV    +  L         R+  +  +    + KA   E     T  V  F 
Sbjct: 234 LPQEDLEALV----MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT--KTDLVPAFQ 287

Query: 361 QAIDDAEG 368
             + D E 
Sbjct: 288 NLMKDCEA 295

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 77/477 (16%), Positives = 137/477 (28%), Gaps = 146/477 (30%)

Query: 3   CFDLRFECILISLFVDQFFFHCF---FSCCFGAVQ-FEAAWALTNIASG-------TSEN 51
           C   + +C        +  F  F      C       E    L              S N
Sbjct: 171 CLSYKVQC--------KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 52  TRVVIDHGAVPIFVRLLSSPT--------DDVREQAVWALGNVAGDSPKCRDLVLSNGA- 102
            ++ I H       RLL S           +V+    W   N+      C+ L+ +    
Sbjct: 223 IKLRI-HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-----SCKILLTTRFKQ 276

Query: 103 --------------LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL 148
                         L             S+L             +PQ L  +     P  
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-------RPQDLPREVLTTNPRR 329

Query: 149 ERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV---CPRLVELLRH-------- 196
             +I  S  D + T   W          DK+  +IE+ +    P      R         
Sbjct: 330 LSIIAESIRDGLAT---W--DNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVF 381

Query: 197 PSPSVLIPA--LRTV-GNIVTGDDMQTQCIINHQALPCLLD-----------LLTQNYKK 242
           P PS  IP   L  +  +++  D M    ++N      L++            +    K 
Sbjct: 382 P-PSAHIPTILLSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 243 SIKKEA--------------CWTISNITAGNVNQ---------IQAIIEAGIIGPLVNLL 279
            ++ E                +   ++    ++Q         ++ I     +     + 
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 280 LNAEF-EIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDP-RIVTVCLE 335
           L+  F E K        NA+    N  +Q+KF         +CD  N P   R+V     
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-----ICD--NDPKYERLV----N 546

Query: 336 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 392
            + + L   + E+N+  +   +L   A+               ++  I+E+A K ++
Sbjct: 547 AILDFLP--KIEENLICSKYTDLLRIAL-------------MAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 57/435 (13%), Positives = 126/435 (28%), Gaps = 137/435 (31%)

Query: 8   FECIL------ISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIAS---GTSENTRVVID- 57
           F  +L      +  FV+              ++    + ++ I +     S  TR+ I+ 
Sbjct: 68  FWTLLSKQEEMVQKFVE------------EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 58  ----HGAVPIFVRLLSSPTDDV-REQAVWALGNVA-GDSPKCRDLVLSNGALMP------ 105
               +    +F         +V R Q    L        P  +++++ +G  +       
Sbjct: 116 RDRLYNDNQVF------AKYNVSRLQPYLKLRQALLELRPA-KNVLI-DG--VLGSGKTW 165

Query: 106 LLAQ--FNEHAKLSMLRNATW-TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD 162
           +      +   +  M     W  L N C   P+ + E        L++L++  D      
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKN-CN-SPETVLEM-------LQKLLYQIDPN---- 212

Query: 163 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGDDMQTQ 221
                +  SD +   I+  I + +   L  LL+     + L+        ++   ++Q  
Sbjct: 213 ----WTSRSDHS-SNIKLRIHS-IQAELRRLLKSKPYENCLL--------VL--LNVQNA 256

Query: 222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 281
              N   L C + L T+   K +          ++A     I           L +  + 
Sbjct: 257 KAWNAFNLSCKILLTTRF--KQV-------TDFLSAATTTHI----------SLDHHSMT 297

Query: 282 AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC-IKPL-CDLLNCPDPRIVTVCLEGLEN 339
                  E    +        + + + L  +     P    ++                 
Sbjct: 298 --LT-PDEVKSLLLKYL----DCRPQDLPREVLTTNPRRLSII----------------- 333

Query: 340 ILKAGEAEKNMGNT------GGVNLFAQAIDDA-EGLEKIENLQSHDNTEIYEKAVKI-- 390
                E+ ++   T         +     I+ +   LE  E  +  D   ++  +  I  
Sbjct: 334 ----AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 391 --LETYWVEEDEDEP 403
             L   W +  + + 
Sbjct: 390 ILLSLIWFDVIKSDV 404

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 55.9 bits (133), Expect = 2e-08
 Identities = 29/235 (12%), Positives = 79/235 (33%), Gaps = 12/235 (5%)

Query: 60  AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 119
            +   +  L+SP   VR++ + ALG++      C ++V  +  +  LL++ +++  +S  
Sbjct: 176 ILTCLLPQLTSPRLAVRKRTIIALGHLV---MSCGNIVFVD-LIEHLLSELSKNDSMSTT 231

Query: 120 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 179
           R     ++   R     + E     +P + +  + +DDE+      A          ++ 
Sbjct: 232 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY 291

Query: 180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 239
             +   +    ++ L +       P           + M      +             +
Sbjct: 292 PHVST-IINICLKYLTYD------PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDD 344

Query: 240 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 294
               +++ A   +  +     +++       +   L++     E  +K +   A 
Sbjct: 345 MSWKVRRAAAKCLDAV-VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAY 398

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 37/240 (15%), Positives = 80/240 (33%), Gaps = 25/240 (10%)

Query: 17   VDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 76
            V QF      S    +++  A  +L  +      + ++ +      + +   SSP+++V+
Sbjct: 818  VGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEEVK 873

Query: 77   EQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 135
              A +ALG+++ G+ P+    VL      P       H+   ++ +A+            
Sbjct: 874  SAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSAS----------VV 923

Query: 136  PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 195
             L          L +     ++         L         K+  +    + PRL   L 
Sbjct: 924  GLKPYVENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGYLI 975

Query: 196  HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 255
              S       +  V   ++ D  Q    +    +   L  L      ++++ A  T ++ 
Sbjct: 976  SGSSYARSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDP-DLNVRRVALVTFNSA 1033

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 38/332 (11%), Positives = 90/332 (27%), Gaps = 31/332 (9%)

Query: 37  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 96
           AA  L  + S   E           P  +       ++V+     A  ++   +   +  
Sbjct: 353 AAKCLDAVVSTRHEMLPEFYKT-VSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSW 411

Query: 97  VLSNGA-----------------LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 139
           +    A                 ++  L +  +   +   +     L+      P  L +
Sbjct: 412 LCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ 471

Query: 140 QTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 197
                +P +   ++  S+   +  DA   L  +    + ++       + P +V  +  P
Sbjct: 472 HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP 531

Query: 198 SPSVLIPALRTVGNIVT------GDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACW 250
              +   AL     +V                       C +  L   +  + +K+ A  
Sbjct: 532 FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAIS 591

Query: 251 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV 310
            +  I     + + + +   +   L  L          +A   I+ +        +    
Sbjct: 592 CMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEG 651

Query: 311 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342
                  L   L      +    L  L+ ++K
Sbjct: 652 VP----ILASFLRKNQRALKLGTLSALDILIK 679

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 48/340 (14%), Positives = 108/340 (31%), Gaps = 44/340 (12%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 91
            VQ  +A  L    S T      +       IF+  +S       E +V AL  ++    
Sbjct: 309 DVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINAISRRIVPKVEMSVEALAYLSLK-A 365

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLR-NATWTLSNFCRGKPQPLFEQTRPALPALER 150
             + ++ SN +   +L    +  K++         ++N      +               
Sbjct: 366 SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXX 425

Query: 151 LI-----HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 205
                       E             D      + ++   +   L   + + SP+     
Sbjct: 426 XXXXPAADKVGAEKAAKE--------DILLFNEKYILRTELISFLKREMHNLSPNCKQQV 477

Query: 206 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITA----GN 259
           +R + NI    +   Q +    A+  +L+ L   Q+  + I+   C  ++ +      G 
Sbjct: 478 VRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536

Query: 260 VNQIQAIIEAGIIGPLVNLLLNAEFEIKK--------------EAAWAISNATSGGSNEQ 305
           + +  + + A  I  L  LL  +                    EA  A++N  S  +++ 
Sbjct: 537 IFKKYSALNA--IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDG 594

Query: 306 IK----FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 341
            +     + ++     + +L+   +  +    LE + N++
Sbjct: 595 EEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 54.4 bits (130), Expect = 5e-08
 Identities = 58/360 (16%), Positives = 103/360 (28%), Gaps = 77/360 (21%)

Query: 48  TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 107
              N + ++    +    R + + + + ++Q V  + N+          +   GA+  +L
Sbjct: 446 LLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIIL 504

Query: 108 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL 167
                      L N                         AL R++   +  ++       
Sbjct: 505 ---------EYLANKQDIGE-----------PIRILGCRALTRMLIFTNPGLIF------ 538

Query: 168 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 227
                     + A+      P L ELL   +P    P           +D Q +   N++
Sbjct: 539 -----KKYSALNAI------PFLFELLPRSTPVDDNPLH---------NDEQIKLTDNYE 578

Query: 228 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 287
           AL  L +L +     S  +E C  I             +        + NL+L+    ++
Sbjct: 579 ALLALTNLASSE--TSDGEEVCKHI-------------VSTKVYWSTIENLMLDENVPLQ 623

Query: 288 KEAAWAISNATSGGSNEQIKFL-----VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342
           +     ISN  S       KF       S      L  LL   D            NI  
Sbjct: 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683

Query: 343 AGE--AEKNMGNTGGVN----LFAQAIDDAE----GLEKIENLQSHDNTEIYEKAVKILE 392
                A++ +     +     +FA  IDD E     L     L          +   +L+
Sbjct: 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQ 743

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 34/142 (23%)

Query: 60  AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 119
            +      ++     VR     AL              + + A  PLL     +    + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSR------------MGDEAFEPLLESL-SNEDWRIR 59

Query: 120 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 179
             A W + NF          Q   A+  L +L+  +   V + A  +L  +        +
Sbjct: 60  GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 180 AVIEAGVCPRLVELLRHPSPSV 201
            V  A     + +L    +   
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 20/135 (14%), Positives = 37/135 (27%), Gaps = 34/135 (25%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           V+ + + AL+ +               A    +  LS+    +R  A W +GN       
Sbjct: 28  VRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGN------- 68

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
                  +   +  L +  E     +   A  +L                    A+E+L 
Sbjct: 69  -----FQDERAVEPLIKLLEDDSGFVRSGAARSLEQI----------GGERVRAAMEKLA 113

Query: 153 HSNDDEVLTDACWAL 167
            +        A   L
Sbjct: 114 ETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 35/153 (22%)

Query: 142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 201
              L      +   +  V  D   ALS + D      +A         L+E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 202 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 261
              A   +GN    D+         +A+  L+ LL ++    ++  A  ++  I  G   
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLL-EDDSGFVRSGAARSLEQI--GG-- 102

Query: 262 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 294
                    +   +  L        +K A   +
Sbjct: 103 -------ERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 11/53 (20%)

Query: 32  AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 84
            V+  AA +L  I                     +L  + T   R+ AV  L 
Sbjct: 88  FVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLE 129

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 51.4 bits (122), Expect = 5e-07
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 29/164 (17%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +++  A+ +    +GT  N+ V        +    +S   DDVR  AV ALG V      
Sbjct: 558 LRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRRAAVIALGFVLLRDYT 611

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
                     +  ++   ++     +     + L   C GK          A+  L+ L 
Sbjct: 612 ---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLT 656

Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 196
               D V   A  ALS +     +K        + P++ ++ ++
Sbjct: 657 KDPVDFVRQAAMIALSMILIQQTEK--------LNPQVADINKN 692

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 43/288 (14%), Positives = 80/288 (27%), Gaps = 38/288 (13%)

Query: 57  DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAK 115
               V + + LL      VR   V  L ++      + + ++L +   +  L      ++
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 116 LSMLRNATWTLSNFCRGKP--QPL--FEQTRPALPALERLIH----SNDDEVLTDACWAL 167
             +  +    L    R     Q +  FE    A   L  +I     S+   V+ D    L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFEN---AFERLLDIITEEGNSDGGIVVEDCLILL 236

Query: 168 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV---------------LIPALRTVGNI 212
             L    N       E     R+         +                L+  L +  N 
Sbjct: 237 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP 296

Query: 213 VTGDDMQTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAGN-VNQIQ-AIIEA 269
                   + +     L  L  + +       I  E   T+S +  G  VNQ   A + A
Sbjct: 297 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA 356

Query: 270 GIIGPLVNLLLN--------AEFEIKKEAAWAISNATSGGSNEQIKFL 309
               P   +++           F ++    +            Q + +
Sbjct: 357 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 35/229 (15%), Positives = 73/229 (31%), Gaps = 25/229 (10%)

Query: 136 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 195
            L  + + AL  +  L   +D+     A  AL  +    +  ++ ++        +  L 
Sbjct: 26  SLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS 85

Query: 196 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL---------------LDLLTQNY 240
             +  V I ALR +G +V    M ++  +  +A   L               +D+L++  
Sbjct: 86  QENEKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQ 143

Query: 241 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 300
                K     I+ +        +    AG    L  L  +A+          I +    
Sbjct: 144 PLEDSKLVRTYINELVVSPDLYTKV---AGFCLFLNMLNSSADSGHLTLILDEIPSLLQN 200

Query: 301 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 349
            +       + +  +  L   L+ P    V + L  +  I+      + 
Sbjct: 201 DN-----EFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREG 244

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 49/320 (15%), Positives = 106/320 (33%), Gaps = 38/320 (11%)

Query: 62  PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 121
           P     + +P    R+ AV A G +  + P+   L       MP L +  +   + +   
Sbjct: 369 PFIKEHIKNPDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 427

Query: 122 ATWTLSNFCRGKPQPLFEQT--RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 179
           A WT+   C   P+         P L  L   + +    V ++ CWA S L++   +   
Sbjct: 428 AAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAAD 486

Query: 180 AVIEAGVC-------------PRLVELLRHPS---PSVLIPALRTVGNIVTGDDMQTQCI 223
              +                  +L+E    P     ++   A  ++  IV          
Sbjct: 487 VADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPA 546

Query: 224 IN---HQALPCLLDLLTQNYKKSIKKE----------ACWTISNITAGNVNQIQAIIEAG 270
           +       +  L  +L          +           C T+ N+     +Q    I   
Sbjct: 547 VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV 606

Query: 271 IIGPLVNLLLNAE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-NCPDP 327
           ++  L+ +  +      ++++A  A+S        E +K++  +     L   L N  + 
Sbjct: 607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEY 664

Query: 328 RIVTVCLEGLENILKAGEAE 347
           ++    +  + ++ +A ++ 
Sbjct: 665 QVCLAAVGLVGDLCRALQSN 684

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	431
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.98
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.91
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.81
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.75
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.73
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.73
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.71
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.7
3grl_A	651	General vesicular transport factor P115; vesicle t	99.69
3grl_A	651	General vesicular transport factor P115; vesicle t	99.69
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.68
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.68
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.6
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.6
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.59
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.56
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.54
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.51
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.51
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.5
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.5
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.49
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.47
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.46
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.46
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.45
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.41
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.27
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.25
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.18
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.09
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.06
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.03
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.99
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.97
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.97
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.94
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.92
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.88
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.87
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.84
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.84
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.83
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.73
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.67
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.56
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.52
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.51
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.49
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.36
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.33
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.3
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.23
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.19
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.19
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.18
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.14
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.11
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.92
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.87
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.76
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.71
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.69
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.67
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.58
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.51
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.49
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.4
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.37
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.36
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.35
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.32
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.31
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.27
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.24
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.21
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.0
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.91
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.77
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.75
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.29
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.01
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.96
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.92
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.79
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.61
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.23
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.04
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.96
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.92
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.87
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.7
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	94.52
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	93.85
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.4
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.23
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	92.56
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	92.25
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	92.23
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	92.13
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	92.0
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	91.78
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	91.29
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	90.27
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	89.97
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	86.86
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	86.7
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	85.85
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	85.63
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	85.28
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	84.9
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	83.8
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	83.48
1w9c_A	321	CRM1 protein, exportin 1; nuclear protein, nuclear	82.35
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	81.68
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	81.21

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2.1e-55  Score=428.17  Aligned_cols=412  Identities=47%  Similarity=0.782  Sum_probs=352.6

Q ss_pred             chhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 014088            5 DLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG   84 (431)
Q Consensus         5 ~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~   84 (431)
                      +..++.|++|.+|.     +|.+++++.+|..|+|+|+|++.++++.+..+++.|++|.|+++|+++++.+++.|+|+|+
T Consensus        94 ~~ii~~G~ip~LV~-----lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~  168 (510)
T 3ul1_B           94 DNIIRAGLIPKFVS-----FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG  168 (510)
T ss_dssp             HHHHHTTHHHHHHH-----HTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHH-----HHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            45678999999999     6666778899999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCChHHHHHHHHcCChHHHHHHhcccc----chhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHH
Q 014088           85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEV  159 (431)
Q Consensus        85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v  159 (431)
                      ||+.+.+..|..+.+.|++++++.++....    ...+++.++|++++++.+. +........+++|.|++++.++++++
T Consensus       169 nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v  248 (510)
T 3ul1_B          169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV  248 (510)
T ss_dssp             HHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHH
Confidence            999999999999999999999999995322    3457889999999999987 55566667899999999999999999


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc
Q 014088          160 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN  239 (431)
Q Consensus       160 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  239 (431)
                      +..++|+|.+++.+.+...+.+.+.|+++.|+.++.+++..++..+++++++++..++.....+++.|+++.|..+|.++
T Consensus       249 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~  328 (510)
T 3ul1_B          249 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP  328 (510)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS
T ss_pred             HHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC
Confidence            99999999999999888888888999999999999999999999999999999999998888999999999999999998


Q ss_pred             chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088          240 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC  319 (431)
Q Consensus       240 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~  319 (431)
                       +..+++.|+|+|+|++.++++..+.+++.|+++.|+.++.+++.+++.+|+|+|+|++..++.++...+.+.|+++.|+
T Consensus       329 -~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~  407 (510)
T 3ul1_B          329 -KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM  407 (510)
T ss_dssp             -SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence             9999999999999999998999999999999999999999999999999999999999988889999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 014088          320 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED  399 (431)
Q Consensus       320 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~  399 (431)
                      ++++.++++++..++++|.++++.+++..      ..+.++..+.+.||+++|+.|++|+|++++++|..+|++||++|+
T Consensus       408 ~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~  481 (510)
T 3ul1_B          408 NLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE  481 (510)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhHhcc------chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence            99999999999999999999998876532      245688999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCCCCCCcccCCCCCCCCCCCCcC
Q 014088          400 EDEPLPPGDATQAGFGFAGNGLPVPSGGFNF  430 (431)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
                      +||+....+.+..+|.|...+  .|.|||||
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  510 (510)
T 3ul1_B          482 EEDQNVVPETTSEGFAFQVQD--GAPGTFNF  510 (510)
T ss_dssp             -------------------------------
T ss_pred             ccccccCCCCCccccccCCCC--CCCCCCCC
Confidence            766654444556668887543  46699998

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=6.6e-55  Score=427.15  Aligned_cols=412  Identities=47%  Similarity=0.775  Sum_probs=352.6

Q ss_pred             chhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 014088            5 DLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG   84 (431)
Q Consensus         5 ~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~   84 (431)
                      +..++.|++|.+|.     +|..++++.+|..|+|+|+|++.++++.+..+++.|++|.|+.+|.++++.+++.|+|+|+
T Consensus       113 ~~ii~~G~ip~Lv~-----lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~  187 (529)
T 3tpo_A          113 DNIIRAGLIPKFVS-----FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG  187 (529)
T ss_dssp             HHHHHTTHHHHHHH-----HHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHH-----HHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            45678899999999     6767788999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCChHHHHHHHHcCChHHHHHHhcccc----chhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHH
Q 014088           85 NVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEV  159 (431)
Q Consensus        85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v  159 (431)
                      ||+.+++..+..+.+.|++++|+.++....    ...+++.++|++++++.+. +........+++|.|+.++.++++++
T Consensus       188 nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v  267 (529)
T 3tpo_A          188 NIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV  267 (529)
T ss_dssp             HHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred             HHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence            999999999999999999999999995322    3457889999999999987 55566677899999999999999999


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc
Q 014088          160 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN  239 (431)
Q Consensus       160 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  239 (431)
                      +..++|+|.+++.+.+...+.+...|+++.|+.++.+++..++..+++++++++.+++.....+++.|+++.|..+|.++
T Consensus       268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~  347 (529)
T 3tpo_A          268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP  347 (529)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC
Confidence            99999999999999888888888999999999999999999999999999999999998888999999999999999998


Q ss_pred             chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088          240 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC  319 (431)
Q Consensus       240 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~  319 (431)
                       ++.++..|+|+|+|++.++++....+++.|+++.|+.++.+++.+++.+|+|+|+|++..+++++...+.+.|+++.|+
T Consensus       348 -~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~  426 (529)
T 3tpo_A          348 -KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLM  426 (529)
T ss_dssp             -SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred             -CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHH
Confidence             9999999999999999998999999999999999999999999999999999999999988889999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 014088          320 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED  399 (431)
Q Consensus       320 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~  399 (431)
                      ++++.++++++..++++|.++++.++...      ..+.+...+.+.||+++|+.|++|+|.+++++|..+|++||++|+
T Consensus       427 ~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~  500 (529)
T 3tpo_A          427 NLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE  500 (529)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC----
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhHhcc------ChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence            99999999999999999999998776532      245588899999999999999999999999999999999999877


Q ss_pred             CCCCCCCCCCCCCCcccCCCCCCCCCCCCcC
Q 014088          400 EDEPLPPGDATQAGFGFAGNGLPVPSGGFNF  430 (431)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
                      +||+......+..+|.|...  +.|.|||||
T Consensus       501 ~~~~~~~~~~~~~~~~~~~~--~~~~~~f~f  529 (529)
T 3tpo_A          501 EEDQNVVPETTSEGFAFQVQ--DGAPGTFNF  529 (529)
T ss_dssp             -------------------------------
T ss_pred             ccccccCCCCCCcccccCCC--CCCCCCCCC
Confidence            76665444555666888654  346699998

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.3e-45  Score=362.41  Aligned_cols=406  Identities=80%  Similarity=1.225  Sum_probs=353.0

Q ss_pred             hhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 014088            6 LRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN   85 (431)
Q Consensus         6 ~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~   85 (431)
                      ..++.|++|.++.     +|.+.+++.+|..|+++|++++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|++
T Consensus       112 ~~~~~g~v~~Lv~-----lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~  186 (528)
T 4b8j_A          112 EVIQSGVVPRFVQ-----FLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGN  186 (528)
T ss_dssp             HHHHTTCHHHHHH-----HHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHH-----HhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            3456788988888     55544448999999999999999889999999999999999999999999999999999999


Q ss_pred             hcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHH
Q 014088           86 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACW  165 (431)
Q Consensus        86 l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  165 (431)
                      ++.+.+..+..+...|+++.|+.++..+.++.++..++|+|++++...+........+++|.|+.++.+++++++..+++
T Consensus       187 l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  266 (528)
T 4b8j_A          187 VAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACW  266 (528)
T ss_dssp             HHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            99988888999999999999999997778899999999999999998766777777999999999999999999999999


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHH
Q 014088          166 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK  245 (431)
Q Consensus       166 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  245 (431)
                      +|.+++...+...+.+.+.|+++.|+.+|.++++.++..++++|++++.+++...+.+++.++++.|+.+|.++.++.++
T Consensus       267 aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  346 (528)
T 4b8j_A          267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIK  346 (528)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHH
Confidence            99999998888878888999999999999999999999999999999998888888899999999999999876578999


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 014088          246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  325 (431)
Q Consensus       246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~  325 (431)
                      ..|+|+|+|++.++++..+.+++.|+++.|+.++.+++..++..|+++|++++..+.++....+.+.|+++.|+.++..+
T Consensus       347 ~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~  426 (528)
T 4b8j_A          347 KEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP  426 (528)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC
Confidence            99999999999988888999999999999999999999999999999999999987788999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCC
Q 014088          326 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLP  405 (431)
Q Consensus       326 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~~~~  405 (431)
                      +++++..++++|.+++...+....... ...+.+...+.+.|+++.|..+++|+++++++.|..++++||+.|+++|..+
T Consensus       427 d~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~~~  505 (528)
T 4b8j_A          427 DIRIVTVCLEGLENILKVGETDKTLAA-GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGA  505 (528)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHT-CSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhccc-ccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccccc
Confidence            999999999999999987766432111 1345689999999999999999999999999999999999999877665443


Q ss_pred             CCC--CCCCCcccC
Q 014088          406 PGD--ATQAGFGFA  417 (431)
Q Consensus       406 ~~~--~~~~~~~~~  417 (431)
                      ..+  ..++.|+|.
T Consensus       506 ~~~~~~~~~~~~~~  519 (528)
T 4b8j_A          506 TTVAAPQGATFDFG  519 (528)
T ss_dssp             --------------
T ss_pred             cCCCccccceeccC
Confidence            322  223445554

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.2e-43  Score=348.47  Aligned_cols=388  Identities=56%  Similarity=0.860  Sum_probs=349.3

Q ss_pred             hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088            7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV   86 (431)
Q Consensus         7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l   86 (431)
                      .++.|++|.++.     +|.+.+++.+|..|+++|++++.++++.+..+++.|+++.|+.+|+++++.++..|+|+|+++
T Consensus       126 ~~~~g~i~~Lv~-----~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l  200 (530)
T 1wa5_B          126 VIQAGVVPRLVE-----FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV  200 (530)
T ss_dssp             HHHTTCHHHHHH-----TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHH-----HhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            456788888888     554434789999999999999998889999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHHHH
Q 014088           87 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACW  165 (431)
Q Consensus        87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  165 (431)
                      +.+.+..+..+...|+++.|+.++ .+.++.++..++|+|++++.+. +........+++|.|+.++.+++++++..+++
T Consensus       201 ~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~  279 (530)
T 1wa5_B          201 AGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACW  279 (530)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred             hCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHH
Confidence            999888899999999999999999 5588999999999999999886 66666677899999999999999999999999


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHH
Q 014088          166 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK  245 (431)
Q Consensus       166 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  245 (431)
                      +|.+++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+++...+.+++.++++.|+.+|.++ ++.++
T Consensus       280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr  358 (530)
T 1wa5_B          280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIK  358 (530)
T ss_dssp             HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHH
T ss_pred             HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHH
Confidence            99999988877777788889999999999999999999999999999998888888888899999999999999 89999


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCH--HHHHHHHHCCChHHHHhhcC
Q 014088          246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLN  323 (431)
Q Consensus       246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~--~~~~~l~~~~~l~~L~~ll~  323 (431)
                      ..|+|+|+|++.++++..+.+++.|+++.|+.++.++++.++..|+++|++++..+.+  +..+.+.+.|+++.|+.++.
T Consensus       359 ~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~  438 (530)
T 1wa5_B          359 KEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE  438 (530)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHh
Confidence            9999999999998888889999999999999999999999999999999999987665  78888899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 014088          324 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE  402 (431)
Q Consensus       324 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~  402 (431)
                      .+++.++..++++|.+++...+..... .....+.+...+.+.|+++.|..|++++++++++.|..+|++||.+|++||
T Consensus       439 ~~~~~v~~~al~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~~  516 (530)
T 1wa5_B          439 IADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAV  516 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC---
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhhhhc-ccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccccc
Confidence            999999999999999999877653211 011245688999999999999999999999999999999999999877653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.6e-42  Score=333.86  Aligned_cols=388  Identities=60%  Similarity=0.940  Sum_probs=346.0

Q ss_pred             hhh-hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088            8 FEC-ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV   86 (431)
Q Consensus         8 ~~~-g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l   86 (431)
                      ++. |++|.++.     +|.+.+++.+|..|+++|.+++..+++....+++.|+++.|+++|+++++.++..++++|+++
T Consensus        60 ~~~~~~i~~L~~-----~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l  134 (450)
T 2jdq_A           60 ISTPGVVARFVE-----FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI  134 (450)
T ss_dssp             HTSTTHHHHHHH-----HHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHcCCcHHHHHH-----HHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            344 78888887     555444889999999999999998888888899999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHHHH
Q 014088           87 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACW  165 (431)
Q Consensus        87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  165 (431)
                      +.+.+..+..+.+.|+++.++.++..+.+..++..++|+|++++.+. +........+++|.++.++.+++++++..+++
T Consensus       135 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~  214 (450)
T 2jdq_A          135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW  214 (450)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            99988889999999999999999965678999999999999999876 55555556899999999999999999999999


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHH
Q 014088          166 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK  245 (431)
Q Consensus       166 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  245 (431)
                      +|.+++...+.....+...++++.++.++.++++.++..++++|++++...+...+.+++.++++.|++++.++ ++.+|
T Consensus       215 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr  293 (450)
T 2jdq_A          215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIK  293 (450)
T ss_dssp             HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHH
T ss_pred             HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHH
Confidence            99999998777777788889999999999999999999999999999998887777788889999999999998 89999


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 014088          246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  325 (431)
Q Consensus       246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~  325 (431)
                      ..|+|+|+|++.++++..+.+++.|+++.|++++.+++++++..|+++|++++....++..+.+.+.|+++.|+++++.+
T Consensus       294 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~  373 (450)
T 2jdq_A          294 KEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM  373 (450)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence            99999999999988888889999999999999999999999999999999999876678888888999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 014088          326 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE  402 (431)
Q Consensus       326 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~~~  402 (431)
                      +++++..++++|.+++...+..... +....+++...+.+.|+++.|..++++++.++++.|..+|++||++|+++|
T Consensus       374 ~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  449 (450)
T 2jdq_A          374 DSKIVQVALNGLENILRLGEQEAKR-NGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS  449 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             CHHHHHHHHHHHHHHHHhchhhhhc-cccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence            9999999999999999877654221 112345689999999999999999999999999999999999998776654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=6.7e-39  Score=307.32  Aligned_cols=364  Identities=17%  Similarity=0.168  Sum_probs=303.1

Q ss_pred             hhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChH
Q 014088           13 ISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK   92 (431)
Q Consensus        13 ~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   92 (431)
                      +|.+|.     +|. ++++++|..|+++|.+++.+++..+..+++.|++|.|+++|+++++.++..|+|+|.||+.++++
T Consensus         4 l~~lv~-----~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~   77 (457)
T 1xm9_A            4 IPKAVQ-----YLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT   77 (457)
T ss_dssp             HHHHHH-----HHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred             HHHHHH-----HHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence            566666     554 66789999999999999987888888999999999999999999999999999999999998888


Q ss_pred             HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc--------C--------CC
Q 014088           93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------S--------ND  156 (431)
Q Consensus        93 ~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~--------~--------~~  156 (431)
                      .+..+.+.|+++.|+++|..+.++++++.++|+|+|++.+......... +++|.|++++.        +        .+
T Consensus        78 ~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~  156 (457)
T 1xm9_A           78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD  156 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred             HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence            9999999999999999995478899999999999999998433333444 99999999993        2        24


Q ss_pred             hHHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCcccHHHHHHHHhHhhcCC-------------
Q 014088          157 DEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGD-------------  216 (431)
Q Consensus       157 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~-------------  216 (431)
                      ++++..++|+|.|++.+ +.....+.+. |+++.|+.++.+      .+..++..++.++.+++...             
T Consensus       157 ~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~  235 (457)
T 1xm9_A          157 PEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY  235 (457)
T ss_dssp             HHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence            67778999999999988 6677778887 999999999975      46678889999999987321             


Q ss_pred             -------------------------------------hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC
Q 014088          217 -------------------------------------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  259 (431)
Q Consensus       217 -------------------------------------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  259 (431)
                                                           +...+.+++.++++.++.+|.++.++.+++.|+|+|+|++.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~  315 (457)
T 1xm9_A          236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK  315 (457)
T ss_dssp             TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred             ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence                                                 1122334556778899999987767899999999999999854


Q ss_pred             HH---HH-HHHH-HhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC------HH
Q 014088          260 VN---QI-QAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD------PR  328 (431)
Q Consensus       260 ~~---~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~------~~  328 (431)
                      ..   .. +..+ +.|++|.|+++|.+++.+++.+|+|+|.|++...   ....++..+++++|++++...+      .+
T Consensus       316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~---~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~  392 (457)
T 1xm9_A          316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP---LLHRVMGNQVFPEVTRLLTSHTGNTSNSED  392 (457)
T ss_dssp             SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG---GGHHHHHHHTHHHHHHTTTSCCSCSTTHHH
T ss_pred             CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH---HHHHHHHHhhhHHHHHhccCCCCCCCCcHH
Confidence            32   12 3344 5899999999999999999999999999998853   3344556689999999998764      36


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCC
Q 014088          329 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWVEED  399 (431)
Q Consensus       329 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~e~  399 (431)
                      +...++++|.+++.....            ....+.+.|+++.|.+|+.++ ++++++.|.++|++||..++
T Consensus       393 v~~~~l~~l~ni~~~~~~------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          393 ILSSACYTVRNLMASQPQ------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHHHHHTTCTH------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHHHHHhcCHH------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            888999999999865433            477788999999999999999 99999999999999998664

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2.9e-37  Score=300.47  Aligned_cols=359  Identities=24%  Similarity=0.352  Sum_probs=313.8

Q ss_pred             hhhccCCChHHHHHHHHHHHHHcC-CChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088           23 HCFFSCCFGAVQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSN  100 (431)
Q Consensus        23 ~~L~~s~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~  100 (431)
                      +.+ .|++++.|..|+..+.++.+ ....-.+.+++.|+||.|+++|+. .++.++..|+|+|+||+..+++.+..+.+.
T Consensus        64 ~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~  142 (510)
T 3ul1_B           64 KGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG  142 (510)
T ss_dssp             HHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence            355 47789999999999998754 333446889999999999999986 568999999999999999999999999999


Q ss_pred             CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCC-----hHHHHHHHHHHHHhccCC
Q 014088          101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSND-----DEVLTDACWALSYLSDGT  174 (431)
Q Consensus       101 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~  174 (431)
                      |+++.|+.+| .+++.++++.|+|+|+|++.+.+. .......|+++.++.++...+     ..++..+++++.+++.+.
T Consensus       143 GaIp~Lv~lL-~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  221 (510)
T 3ul1_B          143 GAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  221 (510)
T ss_dssp             THHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence            9999999999 788999999999999999988643 334455899999999998654     356889999999999875


Q ss_pred             hHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHH
Q 014088          175 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  254 (431)
Q Consensus       175 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  254 (431)
                      ..........++++.|+.++.++++.++..++++|++++.........+.+.|+++.|+++|.++ +..++..++++|+|
T Consensus       222 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~n  300 (510)
T 3ul1_B          222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGN  300 (510)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHH
Confidence            44333334457899999999999999999999999999998888888888999999999999999 99999999999999


Q ss_pred             hhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH
Q 014088          255 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL  334 (431)
Q Consensus       255 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al  334 (431)
                      ++.+++.....+++.|+++.|+.++.+++..++..|+|+|+|++... +++...+.+.|+++.|+.++++.+.+++..|+
T Consensus       301 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa  379 (510)
T 3ul1_B          301 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA  379 (510)
T ss_dssp             HTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             hhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence            99988999999999999999999999999999999999999998854 57888889999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          335 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       335 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      ++|.|++..+...           ....+.+.|+++.|..++.++++++...+.++|.+++.
T Consensus       380 ~aL~Nl~~~~~~~-----------~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  430 (510)
T 3ul1_B          380 WAITNYTSGGTVE-----------QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  430 (510)
T ss_dssp             HHHHHHHHHCCHH-----------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCHH-----------HHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999865433           25667789999999999999999999999888877654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.2e-36  Score=294.80  Aligned_cols=358  Identities=24%  Similarity=0.354  Sum_probs=314.1

Q ss_pred             hhccCCChHHHHHHHHHHHHHcC-CChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088           24 CFFSCCFGAVQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNG  101 (431)
Q Consensus        24 ~L~~s~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  101 (431)
                      .+ .|++++.+..|+..+.++.+ ......+.+++.|+||.|+++|+. .++.++..|+|+|+|++.+++..+..+.+.|
T Consensus        84 ~l-~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~G  162 (529)
T 3tpo_A           84 GI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG  162 (529)
T ss_dssp             HH-TSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             Hh-cCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence            44 47789999999999998754 344557889999999999999975 6699999999999999999988889999999


Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCC-----hHHHHHHHHHHHHhccCCh
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSND-----DEVLTDACWALSYLSDGTN  175 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~  175 (431)
                      +++.|+.++ .+++.++++.|+|+|+|++.+.+. .......|+++.|+.++...+     ..++..++|++.+++.+..
T Consensus       163 aip~Lv~LL-~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~  241 (529)
T 3tpo_A          163 AIPAFISLL-ASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN  241 (529)
T ss_dssp             HHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT
T ss_pred             CHHHHHHHH-cCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc
Confidence            999999999 888999999999999999987643 334455889999999998654     3568899999999998765


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh
Q 014088          176 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  255 (431)
Q Consensus       176 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  255 (431)
                      .........++++.|+.++.++++.++..++++|++++.........+...|+++.|+++|.++ +..++..++++|+|+
T Consensus       242 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          242 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNI  320 (529)
T ss_dssp             TCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHH
T ss_pred             chhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHHH
Confidence            4333344457899999999999999999999999999998888888888999999999999999 999999999999999


Q ss_pred             hcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 014088          256 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE  335 (431)
Q Consensus       256 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~  335 (431)
                      +.+++.....+++.|+++.|+.++.+++..++..|+|+|+|++.+. +.+...+.+.|+++.|+.++++.+.+++..|++
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~  399 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW  399 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhccc-HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence            9988999999999999999999999999999999999999999864 578888889999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          336 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       336 ~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      +|.|++..+...           ....+.+.|+++.|..++.++++++...+.++|.+++.
T Consensus       400 aL~nl~~~~~~~-----------~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          400 AITNYTSGGTVE-----------QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  449 (529)
T ss_dssp             HHHHHHHHSCHH-----------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHH-----------HHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            999998765432           25667789999999999999999999999888877653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.3e-36  Score=292.75  Aligned_cols=369  Identities=18%  Similarity=0.218  Sum_probs=301.4

Q ss_pred             hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088            7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV   86 (431)
Q Consensus         7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l   86 (431)
                      .++.+.+|.+|.      ++.++++++|..|+++|.+++..+.+.+..+++.|+||.|+++|+++++.+++.|+|+|.||
T Consensus        44 ~~~~~~i~~LV~------~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nL  117 (584)
T 3l6x_A           44 NWRQPELPEVIA------MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI  117 (584)
T ss_dssp             CCCCCCHHHHHH------HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             CcccccHHHHHH------HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            345678888888      55677899999999999999998999999999999999999999999999999999999999


Q ss_pred             cCC-ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc------------
Q 014088           87 AGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------------  153 (431)
Q Consensus        87 ~~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~------------  153 (431)
                      +.. +++++..+.+.|++++|+.+|....+.++++.++++|++|+.... .+.....+.+|.|++++.            
T Consensus       118 a~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~  196 (584)
T 3l6x_A          118 SFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNE  196 (584)
T ss_dssp             TSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC-----
T ss_pred             HccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhcccccccccccc
Confidence            985 688999999999999999999655788999999999999998643 333334678999999771            


Q ss_pred             ------CCChHHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCcccHHHHHHHHhHhhcCChh--
Q 014088          154 ------SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM--  218 (431)
Q Consensus       154 ------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~~--  218 (431)
                            ..+++++..+.++|.||+...++..+.+.+. |+++.|+.+++.      .+....+.|+++|.||+.....  
T Consensus       197 ~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~  276 (584)
T 3l6x_A          197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREI  276 (584)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHS
T ss_pred             cccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccc
Confidence                  2357999999999999999887756667764 667899999864      4567889999999999975211  


Q ss_pred             -----------------------hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH---HHHH-HHHHhCC
Q 014088          219 -----------------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV---NQIQ-AIIEAGI  271 (431)
Q Consensus       219 -----------------------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~-~l~~~~~  271 (431)
                                             ....+.+.++++.|+.+|.+..++.+++.|+|+|.||+.+..   ...+ .+.+.++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~g  356 (584)
T 3l6x_A          277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA  356 (584)
T ss_dssp             TTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHH
T ss_pred             cchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCc
Confidence                                   111122334567888999755479999999999999998642   2223 3445788


Q ss_pred             HHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--------CHHHHHHHHHHHHHHHHh
Q 014088          272 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--------DPRIVTVCLEGLENILKA  343 (431)
Q Consensus       272 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~~~al~~L~~l~~~  343 (431)
                      ++.|+++|.+++.+++..|+++|.|++....  ... .+..++++.|+++|...        +.++...++++|.|++..
T Consensus       357 lp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~  433 (584)
T 3l6x_A          357 LSAIADLLTNEHERVVKAASGALRNLAVDAR--NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE  433 (584)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999998653  223 34778999999999865        357888999999999865


Q ss_pred             hhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 014088          344 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVE  397 (431)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~  397 (431)
                      ...            ....+.+.|+++.|..|+.+.  .+.+++.|.++|..+|..
T Consensus       434 ~~~------------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          434 NLE------------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             CHH------------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             CHH------------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence            443            256677899999999998775  899999999999998864

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.3e-35  Score=291.29  Aligned_cols=360  Identities=24%  Similarity=0.337  Sum_probs=316.7

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCCh-HhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTS-ENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVL   98 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~   98 (431)
                      +++.| .++++.+|..|+++|.+++.... +....+++.|++|.|+++|++++ +.++..|+|+|++++.+.+..+..+.
T Consensus        79 lv~~L-~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~  157 (528)
T 4b8j_A           79 MIGGV-YSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVI  157 (528)
T ss_dssp             HHHHH-TSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHH-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            33356 46679999999999999976554 67788999999999999999876 99999999999999999888999999


Q ss_pred             HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhccCChH
Q 014088           99 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTND  176 (431)
Q Consensus        99 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~  176 (431)
                      +.|+++.|+.+| .++++.++..|+|+|++++.+.+. .......++++.|+.++ .+.++.++..++|+|.+++...+.
T Consensus       158 ~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~  236 (528)
T 4b8j_A          158 DHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ  236 (528)
T ss_dssp             HTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC
T ss_pred             hCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999 667899999999999999987533 23334468999999999 577899999999999999987533


Q ss_pred             HHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhh
Q 014088          177 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  256 (431)
Q Consensus       177 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  256 (431)
                      ... ....++++.|+.++.++++.++..++++|++++...+...+.+++.++++.|+++|.++ ++.++..|+++|+|++
T Consensus       237 ~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~  314 (528)
T 4b8j_A          237 PSF-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIV  314 (528)
T ss_dssp             CCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHT
T ss_pred             CcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHH
Confidence            322 34469999999999999999999999999999998887778888999999999999999 8999999999999999


Q ss_pred             cCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 014088          257 AGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE  335 (431)
Q Consensus       257 ~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~  335 (431)
                      .+++...+.+++.|+++.|+.++.++ +..++..|+|+|+|++.. .++....+.+.|+++.|+.+++..++.++..+++
T Consensus       315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  393 (528)
T 4b8j_A          315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW  393 (528)
T ss_dssp             TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            98889899999999999999999998 999999999999999984 5677888889999999999999889999999999


Q ss_pred             HHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          336 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       336 ~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      +|.++...+...           ....+.+.|+++.|..++.+++++++..|.++|..++.
T Consensus       394 aL~nl~~~~~~~-----------~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (528)
T 4b8j_A          394 AISNATSGGSHD-----------QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK  443 (528)
T ss_dssp             HHHHHHHHSCHH-----------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHH-----------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            999999874322           35667788999999999999999999999888877754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=3.9e-35  Score=287.90  Aligned_cols=369  Identities=22%  Similarity=0.318  Sum_probs=319.2

Q ss_pred             hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCC-hHhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcC
Q 014088           11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGT-SENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAG   88 (431)
Q Consensus        11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~   88 (431)
                      +.+|.++.     .| .++++.+|..|+++|.+++... ...+..+++.|++|.|+.+|.++ ++.++..|+|+|++++.
T Consensus        87 ~~i~~lv~-----~L-~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~  160 (530)
T 1wa5_B           87 QELPQMTQ-----QL-NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS  160 (530)
T ss_dssp             CCHHHHHH-----HH-SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHH-----HH-cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence            34555555     55 4667999999999999997642 44567788999999999999997 89999999999999999


Q ss_pred             CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCChhhHhhhHHHHHHhhcCCChHHHHHHHHHH
Q 014088           89 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWAL  167 (431)
Q Consensus        89 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L  167 (431)
                      ..+..+..+...|+++.|+.+| .++++.++..|+|+|++++...+ ........++++.|+.++.+.+++++..++++|
T Consensus       161 ~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L  239 (530)
T 1wa5_B          161 GTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTL  239 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHH
Confidence            8888888999999999999999 67899999999999999998752 233334478999999999999999999999999


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHH
Q 014088          168 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  247 (431)
Q Consensus       168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~  247 (431)
                      .+++.+...........++++.|+.++.++++.++..++++|++++...+.....+++.++++.|+.++.++ ++.++..
T Consensus       240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~  318 (530)
T 1wa5_B          240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTP  318 (530)
T ss_dssp             HHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHH
T ss_pred             HHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHH
Confidence            999976522223345569999999999999999999999999999988777778888899999999999988 8999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCH
Q 014088          248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP  327 (431)
Q Consensus       248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  327 (431)
                      |+++|+|++.+++...+.+++.|+++.|+.++.++++.++..|+++|++++... +++...+.+.++++.|+.+++.+++
T Consensus       319 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~  397 (530)
T 1wa5_B          319 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TEQIQAVIDANLIPPLVKLLEVAEY  397 (530)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCH
Confidence            999999999988888888999999999999999999999999999999999854 5777788899999999999998999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088          328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       328 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  397 (431)
                      .++..++++|.+++.......         .....+.+.|+++.|..++.+++++++..|.++|..++..
T Consensus       398 ~v~~~a~~aL~~l~~~~~~~~---------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~  458 (530)
T 1wa5_B          398 KTKKEACWAISNASSGGLQRP---------DIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM  458 (530)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCT---------HHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999998643200         0345566789999999999999999999999999887653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=285.46  Aligned_cols=331  Identities=18%  Similarity=0.157  Sum_probs=279.8

Q ss_pred             hhhhhhhhhhhHHHHHhhhccCC-----------ChHHHHHHHHHHHHHcCCChHhHHHHHhCCCh----------HHHH
Q 014088            7 RFECILISLFVDQFFFHCFFSCC-----------FGAVQFEAAWALTNIASGTSENTRVVIDHGAV----------PIFV   65 (431)
Q Consensus         7 ~~~~g~~~~~v~~~lv~~L~~s~-----------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~   65 (431)
                      .++.|.+|.+|+     +|..++           +++++..|+|+|.||+.+.++..+...+.+++          +.++
T Consensus        66 ~~~~g~~p~lv~-----~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  140 (458)
T 3nmz_A           66 MRQSGCLPLLIQ-----LLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCW  140 (458)
T ss_dssp             HHHHTCHHHHHH-----HHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHH-----HHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHH
Confidence            468999999999     555433           27999999999999999888888888888888          6677


Q ss_pred             HhhCCCC--HH-----HHH-------HHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc----------ccchhHHHH
Q 014088           66 RLLSSPT--DD-----VRE-------QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----------HAKLSMLRN  121 (431)
Q Consensus        66 ~lL~~~~--~~-----v~~-------~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~----------~~~~~~~~~  121 (431)
                      +++.+..  .+     +++       +|+|+|.|++.+ +++|+.+.+.|++++|+.+|..          +.++.+++.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~  219 (458)
T 3nmz_A          141 EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRY  219 (458)
T ss_dssp             HHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred             HHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHH
Confidence            7776542  22     444       899999999776 7899999999999999999942          245789999


Q ss_pred             HHHHHHHhhcCCCCCChhh--HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhc-CCC
Q 014088          122 ATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHP  197 (431)
Q Consensus       122 a~~~L~~l~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~  197 (431)
                      |+|+|.||+.+.+..+...  ..+.+|.|+.+|.+++++++..++|+|.|++.. ++.....+.+.|+++.|+.+| .+.
T Consensus       220 Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~  299 (458)
T 3nmz_A          220 AGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK  299 (458)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC
Confidence            9999999998864233222  356799999999999999999999999999985 455667788999999999975 557


Q ss_pred             CcccHHHHHHHHhHhhcCChhhhHHHh-hcCChHHHHHHhcccchh---hHHHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 014088          198 SPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKK---SIKKEACWTISNITA---GNVNQIQAIIEAG  270 (431)
Q Consensus       198 ~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~  270 (431)
                      +..++..++.+|+||+...+.....+. ..|+++.|+++|.+..+.   .+++.|+|+|.|++.   .+++.++.+.+.|
T Consensus       300 ~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G  379 (458)
T 3nmz_A          300 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN  379 (458)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc
Confidence            788999999999999985544555555 789999999999877222   599999999999996   6789999999999


Q ss_pred             CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088          271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  344 (431)
Q Consensus       271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~  344 (431)
                      +++.|+.+|.+++..++++|+++|.|++.. ++++...+.+.|+++.|+++++.+++.+++.|+++|.+++...
T Consensus       380 ~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          380 CLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             cHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999864 4688899999999999999999999999999999999998754

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.4e-35  Score=294.77  Aligned_cols=333  Identities=17%  Similarity=0.153  Sum_probs=287.3

Q ss_pred             cchhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCCh-----------------------------HhH--
Q 014088            4 FDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTS-----------------------------ENT--   52 (431)
Q Consensus         4 ~~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~--   52 (431)
                      ..++.+.|++|.+|.      |.+++++.+++.|+++|.|++.+.+                             ..+  
T Consensus       414 ~~lv~d~g~Ip~LV~------LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r  487 (810)
T 3now_A          414 EKLIEDKASIHALMD------LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKR  487 (810)
T ss_dssp             HHHHHCHHHHHHHHH------HHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHH
T ss_pred             HHHHHccchHHHHHH------HhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHH
Confidence            345556799999999      5557788999999999999998542                             122  


Q ss_pred             -HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 014088           53 -RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  131 (431)
Q Consensus        53 -~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  131 (431)
                       +.+++.|++|.|+.+|+++++.+++.|+|+|+|++.+ +++|..+.+.|++++|+.+| .+.++..++.|+|+|.+++.
T Consensus       488 ~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~  565 (810)
T 3now_A          488 ITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMA-LEGTEKGKRHATQALARIGI  565 (810)
T ss_dssp             HHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhc
Confidence             6888999999999999999999999999999999975 56899999999999999999 66778899999999999997


Q ss_pred             CC-CCCCh--hhHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHH
Q 014088          132 GK-PQPLF--EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  207 (431)
Q Consensus       132 ~~-~~~~~--~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  207 (431)
                      +. +....  ....+++|.|+.+|.++ +...+..++++|.|++..++...+.+++.|+++.|+.++.++++.++..|++
T Consensus       566 ~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~  645 (810)
T 3now_A          566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ  645 (810)
T ss_dssp             HSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred             CCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence            63 21111  12356899999999865 3445678999999999998777788999999999999999999999999999


Q ss_pred             HHhHhhcCChhhhHHHhh-cCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHh
Q 014088          208 TVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFE  285 (431)
Q Consensus       208 ~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~  285 (431)
                      +++|++.+.+. ...+++ .+.++.|+.++.+. +..+|..|+|+|+|++.+++...+.+++ .|+++.|++++.+++.+
T Consensus       646 ~L~NLa~~~~~-~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~  723 (810)
T 3now_A          646 CLCNLVMSEDV-IKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPA  723 (810)
T ss_dssp             HHHHHTTSHHH-HHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHH
T ss_pred             HHHHHhCChHH-HHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHH
Confidence            99999987664 444554 78999999999998 9999999999999999977888999998 89999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC---CHHHHHHHHHHHHHHHHhhhhh
Q 014088          286 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP---DPRIVTVCLEGLENILKAGEAE  347 (431)
Q Consensus       286 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~  347 (431)
                      ++..|+|+|.|++.. ++++...+.+.|++++|..+++..   +.++.+.|+.+|.++++.+.-.
T Consensus       724 vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          724 VQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCcc
Confidence            999999999999985 468899999999999999999754   7899999999999999876543

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=8e-36  Score=296.52  Aligned_cols=372  Identities=16%  Similarity=0.111  Sum_probs=309.0

Q ss_pred             hhhhhhhhhhhHHHHHhhhccC-CChHHHHHHHHHHHHHcCCChHhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 014088            7 RFECILISLFVDQFFFHCFFSC-CFGAVQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALG   84 (431)
Q Consensus         7 ~~~~g~~~~~v~~~lv~~L~~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~   84 (431)
                      .++.|.+..+++ .++++|.+. .+++++..|+++|.+++. .++.+..++ +.|++|.|+.+|+++++.++..++|+|+
T Consensus       369 ~~~~g~i~~Lv~-~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~  446 (810)
T 3now_A          369 PFGDGAALKLAE-ACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFV  446 (810)
T ss_dssp             SSTTTHHHHHHH-HHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             chhhccHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHH
Confidence            344455544443 455577654 278999999999999998 566666666 5799999999999999999999999999


Q ss_pred             HhcCCCh-----------------------------HHH---HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 014088           85 NVAGDSP-----------------------------KCR---DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  132 (431)
Q Consensus        85 ~l~~~~~-----------------------------~~~---~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  132 (431)
                      |++.+.+                             ..+   ..+.+.|+++.|+.++ +++++.+++.|+|+|.|++.+
T Consensus       447 NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d  525 (810)
T 3now_A          447 NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA-KTESHNSQELIARVLNAVCGL  525 (810)
T ss_dssp             HHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC
Confidence            9997541                             122   6788999999999999 678999999999999999976


Q ss_pred             CCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH--HHHHhCcHHHHHHhcCCCCc-ccHHHHHHHH
Q 014088          133 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ--AVIEAGVCPRLVELLRHPSP-SVLIPALRTV  209 (431)
Q Consensus       133 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~l  209 (431)
                      .+........|++|.|+.+|.++++..+..|+|+|.+++...+....  .....++++.|+.+|.++.. ..+..++++|
T Consensus       526 ~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL  605 (810)
T 3now_A          526 KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL  605 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            55444555689999999999999999999999999999865332211  00113689999999986533 3346799999


Q ss_pred             hHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHhHHH
Q 014088          210 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKK  288 (431)
Q Consensus       210 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~  288 (431)
                      .||+..++...+.+++.|+++.|.+++.++ ++.++..|+++|+|++.+ ++....+++ .|.++.|+.++..++..++.
T Consensus       606 ~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~  683 (810)
T 3now_A          606 TNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETAT  683 (810)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHH
T ss_pred             HHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHH
Confidence            999999888888899999999999999998 899999999999999987 556666665 68999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHH-CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhc
Q 014088          289 EAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE  367 (431)
Q Consensus       289 ~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  367 (431)
                      .|+|+|++++.. .+.+.+.+.+ .|+++.|+.++.+++.+++..++++|.|+......            ....+.+.|
T Consensus       684 ~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e------------~~~~l~e~G  750 (810)
T 3now_A          684 ACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE------------IAKKLFETD  750 (810)
T ss_dssp             HHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHH------------HHHHHHTST
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHH------------HHHHHHHCC
Confidence            999999999974 3477888888 89999999999999999999999999999875432            477888999


Q ss_pred             cHHHHHHhhcCC---CHHHHHHHHHHHHHhcC
Q 014088          368 GLEKIENLQSHD---NTEIYEKAVKILETYWV  396 (431)
Q Consensus       368 ~~~~l~~l~~~~---~~~v~~~a~~~l~~~~~  396 (431)
                      +++.|..++..+   ++++.+.|..+|+....
T Consensus       751 ~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          751 IMELLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             HHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            999999997544   89999999999988765

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.3e-33  Score=277.32  Aligned_cols=363  Identities=20%  Similarity=0.206  Sum_probs=295.4

Q ss_pred             hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088            7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV   86 (431)
Q Consensus         7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l   86 (431)
                      ..+.|++|.++.      +.+++++.++..|+++|.+++..++..+..+.+.|++|.|+++|+++++.++..++.+|.++
T Consensus        97 i~~~g~i~~L~~------lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l  170 (529)
T 1jdh_A           97 IFKSGGIPALVK------MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL  170 (529)
T ss_dssp             HHHTTHHHHHHH------HTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHH------HHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            456789999988      55677799999999999999987778888899999999999999999999999988899888


Q ss_pred             cCCChHHHHHHHHcC------------------------------------------ChHHHHHHhccccchhHHHHHHH
Q 014088           87 AGDSPKCRDLVLSNG------------------------------------------ALMPLLAQFNEHAKLSMLRNATW  124 (431)
Q Consensus        87 ~~~~~~~~~~i~~~~------------------------------------------~i~~l~~~l~~~~~~~~~~~a~~  124 (431)
                      +..+++.+..+.+.|                                          +++.++.++ .+.++++++.++|
T Consensus       171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~  249 (529)
T 1jdh_A          171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLW  249 (529)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHH
Confidence            876655555554444                                          444555555 3446778888899


Q ss_pred             HHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCcccH
Q 014088          125 TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVL  202 (431)
Q Consensus       125 ~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~  202 (431)
                      +|.+++...+...  ...+.+|.+++++.+++++++..++++|.+++.+.+.....+.+.|+++.++.++.+  +++.++
T Consensus       250 ~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~  327 (529)
T 1jdh_A          250 TLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT  327 (529)
T ss_dssp             HHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence            9999988753322  235889999999999999999999999999999887777889999999999999975  347899


Q ss_pred             HHHHHHHhHhhcCChh---hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH
Q 014088          203 IPALRTVGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  279 (431)
Q Consensus       203 ~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  279 (431)
                      ..++++|++++...+.   .+..+.+.++++.|+++|.++.++.++..++|+|+|++.+ ++....+.+.|+++.|++++
T Consensus       328 ~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll  406 (529)
T 1jdh_A          328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLL  406 (529)
T ss_dssp             HHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHH
Confidence            9999999999886543   3556788899999999999883369999999999999986 44457888999999999999


Q ss_pred             ccCCHhHHHHHHHHHHH----------------------hcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 014088          280 LNAEFEIKKEAAWAISN----------------------ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL  337 (431)
Q Consensus       280 ~~~~~~v~~~a~~aL~~----------------------l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L  337 (431)
                      .++++++|.+|+|+++|                      ++.  .++....+.+.|+++.|+.++.++++.++..+.++|
T Consensus       407 ~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l  484 (529)
T 1jdh_A          407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL  484 (529)
T ss_dssp             HHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHH
Confidence            98888888777766665                      443  235566788999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 014088          338 ENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  394 (431)
Q Consensus       338 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  394 (431)
                      .++....+             ++..+.+.|+++.|..+++++++++++.|.++|.++
T Consensus       485 ~~l~~~~~-------------~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          485 CELAQDKE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHTTSHH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHhcCHH-------------HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            99874321             477888999999999999999999999999999875

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=8.2e-33  Score=266.10  Aligned_cols=363  Identities=23%  Similarity=0.288  Sum_probs=308.6

Q ss_pred             hhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcC--CChHhHHHHHhC-CChHHHHHhhCCC-CHHHHHHHHHHHHHhcC
Q 014088           13 ISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIAS--GTSENTRVVIDH-GAVPIFVRLLSSP-TDDVREQAVWALGNVAG   88 (431)
Q Consensus        13 ~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~   88 (431)
                      +|.++.     .| .++++.+|..|+.+|.++..  .++.. +.+++. |+++.|+++|+++ ++.++..++++|.+++.
T Consensus        22 l~~l~~-----~l-~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~   94 (450)
T 2jdq_A           22 TSDMIE-----MI-FSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS   94 (450)
T ss_dssp             CHHHHH-----HH-HSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHH-----Hh-cCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence            555555     55 46789999999999999753  23333 446666 9999999999997 89999999999999999


Q ss_pred             CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcC-CChHHHHHHHHH
Q 014088           89 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHS-NDDEVLTDACWA  166 (431)
Q Consensus        89 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~  166 (431)
                      ..++....+.+.|+++.++.++ .++++.++..|+++|++++...+.. ......++++.++.++.+ .+.+++..++++
T Consensus        95 ~~~~~~~~~~~~~~i~~L~~lL-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~  173 (450)
T 2jdq_A           95 GNSLQTRIVIQAGAVPIFIELL-SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA  173 (450)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHH
Confidence            8877777888899999999999 6779999999999999999875322 223346899999999995 689999999999


Q ss_pred             HHHhccCC-hHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHH
Q 014088          167 LSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK  245 (431)
Q Consensus       167 L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  245 (431)
                      |++++.+. +.....+. .++++.|+.++.++++.++..++++|++++...+.....+...++++.|++++.++ ++.++
T Consensus       174 L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~  251 (450)
T 2jdq_A          174 LSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DYKVV  251 (450)
T ss_dssp             HHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-CHHHH
T ss_pred             HHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-chhHH
Confidence            99999764 22212122 58999999999999999999999999999988777777788889999999999988 89999


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 014088          246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  325 (431)
Q Consensus       246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~  325 (431)
                      ..|+++|++++.+++...+.+++.|+++.|++++.++++.++..|+++|++++... ++....+.+.++++.|+.+++++
T Consensus       252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~~l~~~  330 (450)
T 2jdq_A          252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN-RAQIQTVIDANIFPALISILQTA  330 (450)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcC
Confidence            99999999999988888888889999999999999999999999999999999753 56777788899999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088          326 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       326 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  397 (431)
                      +++++..++++|.++.......           ....+.+.|+++.|..++.+++++++..|.++|..+...
T Consensus       331 ~~~v~~~a~~~L~~l~~~~~~~-----------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          331 EFRTRKEAAWAITNATSGGSAE-----------QIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL  391 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCHH-----------HHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999998763221           134455789999999999999999999999999887753

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=266.43  Aligned_cols=350  Identities=17%  Similarity=0.165  Sum_probs=286.6

Q ss_pred             HHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCC------------CHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088           36 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP------------TDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  103 (431)
Q Consensus        36 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~------------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  103 (431)
                      ..++.|..+.. +++.|..+++.|++|.|+++|+..            +++++..|+|+|.||+...++......+.+.+
T Consensus        48 ~~~~~ll~~~~-~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~  126 (458)
T 3nmz_A           48 DMSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVL  126 (458)
T ss_dssp             HHHHHHHHHHS-STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHH
Confidence            37778888887 677889999999999999999963            27999999999999997666655555555555


Q ss_pred             ----------HHHHHHhcccc-chh-----HHH-------HHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcC------
Q 014088          104 ----------MPLLAQFNEHA-KLS-----MLR-------NATWTLSNFCRGKPQPLFEQTRPALPALERLIHS------  154 (431)
Q Consensus       104 ----------~~l~~~l~~~~-~~~-----~~~-------~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~------  154 (431)
                                +.+++++.... +.+     +++       +|+|+|.|++.+...+......|+++.|+.+|..      
T Consensus       127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~  206 (458)
T 3nmz_A          127 HLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYG  206 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccc
Confidence                      55566664321 112     444       8999999998875555556668999999999952      


Q ss_pred             -----CChHHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC-ChhhhHHHhhcC
Q 014088          155 -----NDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQ  227 (431)
Q Consensus       155 -----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~  227 (431)
                           .++.++..|+|+|.|++.+++.....+.. .|+++.|+.+|.+++++++..++++|+||+.. ++..+..+.+.|
T Consensus       207 ~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G  286 (458)
T 3nmz_A          207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG  286 (458)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT
T ss_pred             cccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence                 34678999999999999888755554543 46699999999999999999999999999985 566778888999


Q ss_pred             ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHH-HhCCHHHHHHHHccCCH----hHHHHHHHHHHHhcCC--
Q 014088          228 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEF----EIKKEAAWAISNATSG--  300 (431)
Q Consensus       228 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~----~v~~~a~~aL~~l~~~--  300 (431)
                      +++.|+++|.+..+..+++.|+.+|+||+.++++....+. ..|+++.|++++.+++.    +++++|+++|.|++..  
T Consensus       287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a  366 (458)
T 3nmz_A          287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA  366 (458)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence            9999999864432789999999999999985567677776 68999999999987743    4999999999999862  


Q ss_pred             CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCC
Q 014088          301 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN  380 (431)
Q Consensus       301 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~  380 (431)
                      ..+++...+.+.|+++.|+.++++.+..+++.|+++|.++......            .+..+.+.|+++.|..++.+.+
T Consensus       367 ~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~------------~~~~i~~~G~I~~Lv~LL~s~~  434 (458)
T 3nmz_A          367 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK------------DQEALWDMGAVSMLKNLIHSKH  434 (458)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH------------HHHHHHHHTHHHHHHTTTTCSS
T ss_pred             CCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH------------HHHHHHHCCCHHHHHHHHhCCC
Confidence            4568888899999999999999999999999999999999854332            3666788999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCC
Q 014088          381 TEIYEKAVKILETYWVEE  398 (431)
Q Consensus       381 ~~v~~~a~~~l~~~~~~e  398 (431)
                      +++++.|.++|.++....
T Consensus       435 ~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          435 KMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence            999999999999988753

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.9e-32  Score=273.29  Aligned_cols=369  Identities=20%  Similarity=0.206  Sum_probs=300.7

Q ss_pred             hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088            7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV   86 (431)
Q Consensus         7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l   86 (431)
                      .++.|++|.++.      +.+++++.++..|+++|.+++...+..+..+.+.|+++.|+++|+++++.++..++.+|.++
T Consensus        94 i~~~g~i~~Lv~------lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L  167 (644)
T 2z6h_A           94 IFKSGGIPALVK------MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL  167 (644)
T ss_dssp             HHTTTHHHHHHH------HTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHH------HHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence            356688999888      55677899999999999999987778888899999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHcCChHHHHHHhccccchhHHHH-----------------------------------------HHHH
Q 014088           87 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN-----------------------------------------ATWT  125 (431)
Q Consensus        87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~-----------------------------------------a~~~  125 (431)
                      +...++.+..+.+.|+++.|+.++.......++..                                         ++|+
T Consensus       168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~  247 (644)
T 2z6h_A          168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT  247 (644)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            98788889999999999999999965444444444                                         4455


Q ss_pred             HHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CcccHH
Q 014088          126 LSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLI  203 (431)
Q Consensus       126 L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~  203 (431)
                      |.+++...+..  ....+.+|.|++++++.+++++..++++|.+++.+.+.....+.+.|+++.|+.++.+.  .+.++.
T Consensus       248 L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~  325 (644)
T 2z6h_A          248 LRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE  325 (644)
T ss_dssp             HHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHH
Confidence            55555443211  12246778888888888999999999999999988777778888999999999999763  368999


Q ss_pred             HHHHHHhHhhcCChh---hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc
Q 014088          204 PALRTVGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  280 (431)
Q Consensus       204 ~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  280 (431)
                      .++++|++++...+.   ....+.+.++++.|+++|.++.++.+++.|+|+|+|++.+. +..+.+++.|+++.|++++.
T Consensus       326 ~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~-~~~~~i~~~~~i~~Lv~lL~  404 (644)
T 2z6h_A          326 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLV  404 (644)
T ss_dssp             HHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH-HHHHHHHHcCCHHHHHHHHh
Confidence            999999999875432   23346788999999999998734799999999999999874 44588889999999999998


Q ss_pred             cCC----------------------HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088          281 NAE----------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  338 (431)
Q Consensus       281 ~~~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~  338 (431)
                      +++                      .+++..++.+|.+++...  .....+.+.|+++.|++++.+.++.++..++++|.
T Consensus       405 ~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~  482 (644)
T 2z6h_A          405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC  482 (644)
T ss_dssp             HHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             ccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            743                      345667777777777643  66677889999999999999999999999999999


Q ss_pred             HHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHH--------------------HHHHHHHhcCCC
Q 014088          339 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK--------------------AVKILETYWVEE  398 (431)
Q Consensus       339 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~--------------------a~~~l~~~~~~e  398 (431)
                      ++....+             ++..+.+.|+++.|..++++++++++..                    +..++..||..|
T Consensus       483 ~l~~~~~-------------~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~  549 (644)
T 2z6h_A          483 ELAQDKE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE  549 (644)
T ss_dssp             HHHTSHH-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHcCHH-------------HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence            9875422             4778899999999999999999999654                    455778888766


Q ss_pred             C
Q 014088          399 D  399 (431)
Q Consensus       399 ~  399 (431)
                      .
T Consensus       550 ~  550 (644)
T 2z6h_A          550 P  550 (644)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=2.8e-31  Score=270.21  Aligned_cols=363  Identities=21%  Similarity=0.211  Sum_probs=299.6

Q ss_pred             hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014088            7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV   86 (431)
Q Consensus         7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l   86 (431)
                      ..+.|++|.++.      +..++++.++..|+++|.+++...+..+..+.+.|+++.|+++|++++..++..++.+|.++
T Consensus       230 i~~~g~I~~Lv~------lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L  303 (780)
T 2z6g_A          230 IFKSGGIPALVN------MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL  303 (780)
T ss_dssp             HHHTTHHHHHHH------HTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHH------HHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            456688888888      55667899999999999999987778888999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHcCChHHHHHHhcccc-----------------------------------------chhHHHHHHHH
Q 014088           87 AGDSPKCRDLVLSNGALMPLLAQFNEHA-----------------------------------------KLSMLRNATWT  125 (431)
Q Consensus        87 ~~~~~~~~~~i~~~~~i~~l~~~l~~~~-----------------------------------------~~~~~~~a~~~  125 (431)
                      +..+++.+..+.+.++++.|+.++....                                         +..+++.++|+
T Consensus       304 a~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~  383 (780)
T 2z6g_A          304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT  383 (780)
T ss_dssp             HTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHH
Confidence            9888888888888888888887774332                                         33455566677


Q ss_pred             HHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CC-cccHH
Q 014088          126 LSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLI  203 (431)
Q Consensus       126 L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~-~~v~~  203 (431)
                      |.+++...+..  ....++++.|++++++.+++++..++++|.+++.+.+.....+.+.|+++.|+.++.+ .+ ..++.
T Consensus       384 L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~  461 (780)
T 2z6g_A          384 LRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE  461 (780)
T ss_dssp             HHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHH
Confidence            77776654221  1235788999999999999999999999999999887777888889999999999976 33 38999


Q ss_pred             HHHHHHhHhhcCChh---hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc
Q 014088          204 PALRTVGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  280 (431)
Q Consensus       204 ~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  280 (431)
                      .++++|++++.....   ....+...++++.|+++|.++..+.++..|+|+|+|++.. +.....+.+.|+++.|++++.
T Consensus       462 ~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~  540 (780)
T 2z6g_A          462 PAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLV  540 (780)
T ss_dssp             HHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHH
Confidence            999999999875543   2346778899999999999883359999999999999986 555688889999999999997


Q ss_pred             cCC----------------------HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088          281 NAE----------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  338 (431)
Q Consensus       281 ~~~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~  338 (431)
                      +++                      .+++..++.+|.+++.  .+.....+.+.|+++.|+.++.++++.++..++.+|.
T Consensus       541 ~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~  618 (780)
T 2z6g_A          541 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC  618 (780)
T ss_dssp             HHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             hcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            643                      3466678888888875  3467777889999999999999999999999999999


Q ss_pred             HHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088          339 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  393 (431)
Q Consensus       339 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  393 (431)
                      ++....+             ++..+.+.|+++.|..+++++++++++.|.++|.+
T Consensus       619 ~L~~~~~-------------~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~  660 (780)
T 2z6g_A          619 ELAQDKE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR  660 (780)
T ss_dssp             HHHTSHH-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHhcCHH-------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9974322             57889999999999999999999997765444433

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=4.9e-33  Score=266.65  Aligned_cols=327  Identities=16%  Similarity=0.176  Sum_probs=267.7

Q ss_pred             hhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHH
Q 014088            6 LRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALG   84 (431)
Q Consensus         6 ~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~   84 (431)
                      ...+.|++|.+|.      +.+++++.+|..|+++|.|++.++++++..+++.|++|.|+++|+ ++++.+++.++|+|+
T Consensus        39 ~i~~~g~i~~Lv~------lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~  112 (457)
T 1xm9_A           39 QVYQLGGICKLVD------LLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLW  112 (457)
T ss_dssp             HHHHTTHHHHHHH------HTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHH------HHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            3457899999999      556788999999999999999988999999999999999999999 789999999999999


Q ss_pred             HhcCCChHHHHHHHHcCChHHHHHHhcc--------c-------cchhHHHHHHHHHHHhhcCCCCCChhh-Hh-hhHHH
Q 014088           85 NVAGDSPKCRDLVLSNGALMPLLAQFNE--------H-------AKLSMLRNATWTLSNFCRGKPQPLFEQ-TR-PALPA  147 (431)
Q Consensus        85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~~--------~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~-~~i~~  147 (431)
                      |++.+ +..+..+.+ |+++.|++++..        .       .++++++.|+|+|+||+.+ +...... .. |++|.
T Consensus       113 nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~  189 (457)
T 1xm9_A          113 NLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDS  189 (457)
T ss_dssp             HHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHH
T ss_pred             HHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHH
Confidence            99988 557888888 999999999931        1       3567888999999999987 3222222 23 89999


Q ss_pred             HHHhhcC------CChHHHHHHHHHHHHhccCC-----------------------------------------------
Q 014088          148 LERLIHS------NDDEVLTDACWALSYLSDGT-----------------------------------------------  174 (431)
Q Consensus       148 L~~lL~~------~~~~v~~~a~~~L~~l~~~~-----------------------------------------------  174 (431)
                      |+.++++      .+.+++..++.+|.+++...                                               
T Consensus       190 Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
T 1xm9_A          190 LMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEE  269 (457)
T ss_dssp             HHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCC
T ss_pred             HHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCcccc
Confidence            9999985      45678888999999887321                                               


Q ss_pred             ---hHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChhh---h-HHHh-hcCChHHHHHHhcccchhhHH
Q 014088          175 ---NDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQ---T-QCII-NHQALPCLLDLLTQNYKKSIK  245 (431)
Q Consensus       175 ---~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~---~-~~~~-~~~~l~~L~~lL~~~~~~~v~  245 (431)
                         +...+.+.+.++++.++.+|.+ .++.+++.++++|+|++.++...   . +..+ +.++++.|+++|.++ +.+++
T Consensus       270 ~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~  348 (457)
T 1xm9_A          270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVV  348 (457)
T ss_dssp             CSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHH
T ss_pred             ccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHH
Confidence               0111223445678888888865 46789999999999999876432   2 3334 689999999999999 99999


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCC------HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088          246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC  319 (431)
Q Consensus       246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~  319 (431)
                      ++|+|+|+|++.+ ++ ...++..|+++.|+++|..++      .++...++++|.++..... ++...+.+.|++++|.
T Consensus       349 ~~A~~aL~nls~~-~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~-~~~~~i~~~g~l~~L~  425 (457)
T 1xm9_A          349 RSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP-QLAKQYFSSSMLNNII  425 (457)
T ss_dssp             HHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT-HHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHcCCHHHHH
Confidence            9999999999985 44 345566789999999998864      3688899999999987654 7888888899999999


Q ss_pred             hhcCCC-CHHHHHHHHHHHHHHHHhhh
Q 014088          320 DLLNCP-DPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       320 ~ll~~~-~~~v~~~al~~L~~l~~~~~  345 (431)
                      ++++++ ++++++.|.++|.+++...+
T Consensus       426 ~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          426 NLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            999998 89999999999999875543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=4.9e-32  Score=260.95  Aligned_cols=328  Identities=20%  Similarity=0.200  Sum_probs=266.3

Q ss_pred             hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCC-ChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHH
Q 014088            7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASG-TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALG   84 (431)
Q Consensus         7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~   84 (431)
                      ..+.|++|.+|.      |..++++.+|..|+++|.|++.+ +++++..+++.|+||.|+.+|++ .+..+++.++++|+
T Consensus        86 V~~~G~Ip~LV~------LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~  159 (584)
T 3l6x_A           86 VRKLKGIPVLVG------LLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLW  159 (584)
T ss_dssp             HHHTTHHHHHHH------GGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             HHHcCCcHHHHH------HHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            567799999999      66788899999999999999985 68999999999999999999997 67899999999999


Q ss_pred             HhcCCChHHHHHHHHcCChHHHHHHhc-----------------cccchhHHHHHHHHHHHhhcCCCC-CChhh-HhhhH
Q 014088           85 NVAGDSPKCRDLVLSNGALMPLLAQFN-----------------EHAKLSMLRNATWTLSNFCRGKPQ-PLFEQ-TRPAL  145 (431)
Q Consensus        85 ~l~~~~~~~~~~i~~~~~i~~l~~~l~-----------------~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~-~~~~i  145 (431)
                      +|+.. +.++..+.+ ++++.|++++.                 ...+++++++|+++|.||+...+. ..... ..+++
T Consensus       160 nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli  237 (584)
T 3l6x_A          160 NLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLV  237 (584)
T ss_dssp             HHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHH
T ss_pred             HHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcH
Confidence            99985 456777775 57999999872                 123679999999999999987643 23232 36788


Q ss_pred             HHHHHhhcC------CChHHHHHHHHHHHHhccCChHH-------------------------HHHHHHhCcHHHHHHhc
Q 014088          146 PALERLIHS------NDDEVLTDACWALSYLSDGTNDK-------------------------IQAVIEAGVCPRLVELL  194 (431)
Q Consensus       146 ~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~-------------------------~~~~~~~~~i~~L~~ll  194 (431)
                      +.|+.++++      .+.+.++.|+++|.||+......                         .+.+.+.++++.++.+|
T Consensus       238 ~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL  317 (584)
T 3l6x_A          238 DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL  317 (584)
T ss_dssp             HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHH
Confidence            899999874      46789999999999998652111                         11122334567788888


Q ss_pred             C-CCCcccHHHHHHHHhHhhcCChh----hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 014088          195 R-HPSPSVLIPALRTVGNIVTGDDM----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA  269 (431)
Q Consensus       195 ~-~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  269 (431)
                      . ..++.+++.|+++|+||+.+...    ....+.+.++++.|+++|.++ +..++..|+|+|+||+.+. ... ..+..
T Consensus       318 ~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~-~~~-~~I~~  394 (584)
T 3l6x_A          318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDA-RNK-ELIGK  394 (584)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTC-SCH-HHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCh-hHH-HHHHh
Confidence            5 46789999999999999987532    222344578899999999999 8999999999999999863 333 34478


Q ss_pred             CCHHHHHHHHccC--------CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHH
Q 014088          270 GIIGPLVNLLLNA--------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLEN  339 (431)
Q Consensus       270 ~~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~~L~~  339 (431)
                      |+++.|+++|.++        +.++...|+++|.|++.. ++++.+.+.+.|+++.|+++++..  .+.+.+.|.++|++
T Consensus       395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~n  473 (584)
T 3l6x_A          395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQT  473 (584)
T ss_dssp             HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence            8999999999876        357889999999999875 468899999999999999999875  78999999999999


Q ss_pred             HHHhhhh
Q 014088          340 ILKAGEA  346 (431)
Q Consensus       340 l~~~~~~  346 (431)
                      +..+.+-
T Consensus       474 l~~~~el  480 (584)
T 3l6x_A          474 IWGYKEL  480 (584)
T ss_dssp             HHTSHHH
T ss_pred             HHcCHHH
Confidence            9876653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.98  E-value=6.1e-31  Score=241.16  Aligned_cols=268  Identities=19%  Similarity=0.190  Sum_probs=233.4

Q ss_pred             HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Q 014088           32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSN  100 (431)
Q Consensus        32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~  100 (431)
                      ..+.+|+++|.|++.+ +++|+.+++.|+++.|+.+|..           .++.++..|+|+|.|++..++..+..+...
T Consensus        47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            5556899999999984 8999999999999999999942           347899999999999998887777777554


Q ss_pred             -CChHHHHHHhccccchhHHHHHHHHHHHhhcC-C-CCCChhhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhccCChH
Q 014088          101 -GALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-K-PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTND  176 (431)
Q Consensus       101 -~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~  176 (431)
                       |+++.|+++| ++.++++++.|+|+|.||+.. . .........|++|.|+++| ++.++++++.++.+|.|++...++
T Consensus       126 ~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~  204 (354)
T 3nmw_A          126 KGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE  204 (354)
T ss_dssp             HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence             5599999999 678899999999999999985 2 2233444579999999975 567899999999999999985544


Q ss_pred             HHHHHH-HhCcHHHHHHhcCCCCc----ccHHHHHHHHhHhhc---CChhhhHHHhhcCChHHHHHHhcccchhhHHHHH
Q 014088          177 KIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA  248 (431)
Q Consensus       177 ~~~~~~-~~~~i~~L~~ll~~~~~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  248 (431)
                      ....+. ..|+++.|+.+|.++++    +++..++++|.|++.   .++..++.+.+.|+++.|+++|.++ +..+++.|
T Consensus       205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A  283 (354)
T 3nmw_A          205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNA  283 (354)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred             hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHH
Confidence            444455 68999999999987654    489999999999997   5777888899999999999999998 89999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088          249 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  302 (431)
Q Consensus       249 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  302 (431)
                      +|+|+|++..+++.++.+++.|+++.|++++.+++..+++.|+++|.|++....
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            999999998889999999999999999999999999999999999999998764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.97  E-value=3.1e-30  Score=253.27  Aligned_cols=359  Identities=19%  Similarity=0.196  Sum_probs=296.0

Q ss_pred             hhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 014088           10 CILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD   89 (431)
Q Consensus        10 ~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~   89 (431)
                      .|++|.++.     .|.++++++++..|+.+|.+++. .++.+..+.+.|+++.|+++|+++++.++..++++|.+++.+
T Consensus        58 ~~~i~~Lv~-----~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  131 (529)
T 1jdh_A           58 PQMVSAIVR-----TMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH  131 (529)
T ss_dssp             HHHHHHHHH-----HHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHH-----HHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            367777777     66656688999999999999987 567999999999999999999999999999999999999987


Q ss_pred             ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCC-hHHHHHHHHHH
Q 014088           90 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSND-DEVLTDACWAL  167 (431)
Q Consensus        90 ~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L  167 (431)
                      .+..+..+.+.|+++.+++++ .+++++++..++.+|.+++...+. .......++++.++.++++.+ ...+..++.+|
T Consensus       132 ~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L  210 (529)
T 1jdh_A          132 QEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL  210 (529)
T ss_dssp             CTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             CcchHHHHHHcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHH
Confidence            666788888999999999999 667889999999999999986422 233344688999999998764 55677789999


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHH
Q 014088          168 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  247 (431)
Q Consensus       168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~  247 (431)
                      .+++..+. ....+.+.|+++.++.++.++++.++..+++++.+++...+...   ...++++.|++++.++ +++++..
T Consensus       211 ~~l~~~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~-~~~v~~~  285 (529)
T 1jdh_A          211 KVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSD-DINVVTC  285 (529)
T ss_dssp             HHHTTSTT-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCS-CHHHHHH
T ss_pred             HHHhcCcc-cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCC-CHHHHHH
Confidence            99997654 44668888999999999999999999999999999998654321   1236799999999888 9999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCH--HHHHHHHHCCChHHHHhhcC
Q 014088          248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLN  323 (431)
Q Consensus       248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~--~~~~~l~~~~~l~~L~~ll~  323 (431)
                      |+|+|++++..+++.+..+.+.|+++.|++++...  ++.++..|+++|+|++.....  .....+.+.|+++.|.++++
T Consensus       286 a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~  365 (529)
T 1jdh_A          286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH  365 (529)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTS
T ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhc
Confidence            99999999998888999999999999999999763  479999999999999876432  24567788999999999999


Q ss_pred             CCC-HHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088          324 CPD-PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  393 (431)
Q Consensus       324 ~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  393 (431)
                      +++ +.++..++++|.++....+.             ...+.+.|+++.|..++.++++++++.|.+.+.+
T Consensus       366 ~~~~~~v~~~a~~~l~nl~~~~~~-------------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n  423 (529)
T 1jdh_A          366 PPSHWPLIKATVGLIRNLALCPAN-------------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ  423 (529)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTSGGG-------------HHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             cccchHHHHHHHHHHHHHhcChhh-------------hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence            876 59999999999999864332             3556678999999999888889999888877765

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=3.4e-30  Score=236.23  Aligned_cols=274  Identities=19%  Similarity=0.185  Sum_probs=235.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc----------ccchhHHHHHHHHHHHhhcCCCCCChhh
Q 014088           71 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ  140 (431)
Q Consensus        71 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~  140 (431)
                      +....+..|+|+|.|++.+ +++|+.+.+.|++++|+.+|..          ..++.+++.|+|+|.|++.+....+...
T Consensus        44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4456666899999999987 6789999999999999999942          2357899999999999998763233322


Q ss_pred             --HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHhhcCC
Q 014088          141 --TRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGD  216 (431)
Q Consensus       141 --~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~  216 (431)
                        ..+.+|.|+.+|++++++++..++++|.|++.. ++.....+.+.|+++.|+++| ++.+..++..++.+|+||+...
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence              356799999999999999999999999999985 455667788999999999975 6678899999999999999866


Q ss_pred             hhhhHHHh-hcCChHHHHHHhcccchh---hHHHHHHHHHHHhhc---CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHH
Q 014088          217 DMQTQCII-NHQALPCLLDLLTQNYKK---SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  289 (431)
Q Consensus       217 ~~~~~~~~-~~~~l~~L~~lL~~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  289 (431)
                      +.....+. ..|+++.|+++|.+..+.   ++++.|+|+|.|++.   .+++.++.+.+.|+++.|+++|.+++..++++
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence            55555565 789999999999877222   599999999999997   67899999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          290 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       290 a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                      |+++|.|++.. ++++...+.+.|+++.|+++++++++.+++.|+++|.+++.....
T Consensus       283 A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          283 ACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999864 468888999999999999999999999999999999999986443

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=253.27  Aligned_cols=369  Identities=16%  Similarity=0.175  Sum_probs=306.2

Q ss_pred             chhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhC-CChHHHHHhhCC-CCHHHHHHHHHH
Q 014088            5 DLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSS-PTDDVREQAVWA   82 (431)
Q Consensus         5 ~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~-~~~~v~~~a~~~   82 (431)
                      +..++.|.+|.++.      +.+++++.+|..|+.+|.+++... ..+..+... |+++.|++.|.+ .++.++..++.+
T Consensus         8 ~~~~~~g~i~~Lv~------lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~   80 (644)
T 2z6h_A            8 DAELATRAIPELTK------LLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT   80 (644)
T ss_dssp             ----CTTTHHHHHH------HHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             hhhhhhchHHHHHH------HHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHH
Confidence            44567899999999      556788999999999999999855 466666654 899999999986 489999999999


Q ss_pred             HHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC-hhhHhhhHHHHHHhhcCCChHHHH
Q 014088           83 LGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLT  161 (431)
Q Consensus        83 L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~  161 (431)
                      |.+++... +.+..+.+.|+++.|+++| .++++.++..|+++|.+++...+... .....+++|.|++++++++++++.
T Consensus        81 L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~  158 (644)
T 2z6h_A           81 LHNLSHHR-EGLLAIFKSGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA  158 (644)
T ss_dssp             HHHHTTSH-HHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHH
T ss_pred             HHHHhcCh-hhHHHHHHcCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHH
Confidence            99999875 4788899999999999999 67789999999999999998753333 333489999999999999999999


Q ss_pred             HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc
Q 014088          162 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY  240 (431)
Q Consensus       162 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~  240 (431)
                      .++.+|.+++...+.....+.+.|+++.|+.++++.+ ..++..++.+|.+++.. +..+..+++.|+++.|++++.+. 
T Consensus       159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~-  236 (644)
T 2z6h_A          159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDP-  236 (644)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCS-
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcC-
Confidence            9999999999877777777889999999999998764 46778899999999974 45677888999999999999998 


Q ss_pred             hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHh
Q 014088          241 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  320 (431)
Q Consensus       241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~  320 (431)
                      +..++..++|+|.|++...+..   ....++++.|++++.+++.+++..|+++|.+++... ++....+.+.|+++.|++
T Consensus       237 ~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~-~~~~~~v~~~g~v~~Lv~  312 (644)
T 2z6h_A          237 SQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMMVCQVGGIEALVR  312 (644)
T ss_dssp             CHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHH
Confidence            8999999999999999753321   112367999999999999999999999999998854 577788889999999999


Q ss_pred             hcCCC--CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCC-HHHHHHHHHHHHHhcCC
Q 014088          321 LLNCP--DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN-TEIYEKAVKILETYWVE  397 (431)
Q Consensus       321 ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~-~~v~~~a~~~l~~~~~~  397 (431)
                      ++...  .+.++..++++|.++.......+.         ....+.+.|+++.|..++.+++ +++++.|.++|.++...
T Consensus       313 lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~---------~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~  383 (644)
T 2z6h_A          313 TVLRAGDREDITEPAICALRHLTSRHQEAEM---------AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  383 (644)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTSSSTTHHH---------HHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHccCCcHHHHHHHHHHHHHHhcCCchHHH---------HHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence            99753  379999999999999754222111         2444667899999999988765 79999999999988764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=6e-28  Score=245.75  Aligned_cols=373  Identities=20%  Similarity=0.194  Sum_probs=300.5

Q ss_pred             hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088           11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS   90 (431)
Q Consensus        11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   90 (431)
                      |+++.++.     .|.+++++.++..|+.+|.+++. ..+.+..+.+.|+++.|+.+|+++++.++..|+++|.+++...
T Consensus       192 ~~i~~Lv~-----~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~  265 (780)
T 2z6g_A          192 QMVSAIVR-----TMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ  265 (780)
T ss_dssp             HHHHHHHH-----HHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHH-----HHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence            66666666     66656689999999999999987 4677888999999999999999999999999999999999877


Q ss_pred             hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCCh-HHHHHHHHHHH
Q 014088           91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDD-EVLTDACWALS  168 (431)
Q Consensus        91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~  168 (431)
                      +..+..+.+.|+++.|+.++ .+.+.+++..++.+|.+++...+. .......+.++.|+.++++.+. ..+..++.+|.
T Consensus       266 ~~~~~~v~~~g~v~~Lv~lL-~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~  344 (780)
T 2z6g_A          266 EGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK  344 (780)
T ss_dssp             TTHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            77788888999999999999 567889999999999999975422 2222346889999999997754 45667899999


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHH
Q 014088          169 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA  248 (431)
Q Consensus       169 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  248 (431)
                      +++.... ....+++.|+++.|+.++.+.+..++..++++|.+++......   ....++++.|++++.+. ++.++..|
T Consensus       345 ~Ls~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~-d~~vr~~A  419 (780)
T 2z6g_A          345 VLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSD-DINVVTCA  419 (780)
T ss_dssp             HHHTSTT-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCS-CHHHHHHH
T ss_pred             HhhcChH-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCC-CHHHHHHH
Confidence            9997654 4566888899999999999999999999999999999765431   11236789999999988 99999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-C-HhHHHHHHHHHHHhcCCCCH-H-HHHHHHHCCChHHHHhhcCC
Q 014088          249 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-E-FEIKKEAAWAISNATSGGSN-E-QIKFLVSQGCIKPLCDLLNC  324 (431)
Q Consensus       249 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~-~~v~~~a~~aL~~l~~~~~~-~-~~~~l~~~~~l~~L~~ll~~  324 (431)
                      +|+|++++..+++.+..+++.|+++.|++++... + ..++..|+++|++++..... + ....+...++++.|+++++.
T Consensus       420 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~  499 (780)
T 2z6g_A          420 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP  499 (780)
T ss_dssp             HHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred             HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC
Confidence            9999999998888899999999999999999873 3 48999999999999875432 2 23466788999999999987


Q ss_pred             CCH-HHHHHHHHHHHHHHHhhhhhhhcCCCCCc-----------------------------------------------
Q 014088          325 PDP-RIVTVCLEGLENILKAGEAEKNMGNTGGV-----------------------------------------------  356 (431)
Q Consensus       325 ~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~-----------------------------------------------  356 (431)
                      .+. .++..++++|.|+...........+.+..                                               
T Consensus       500 ~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~L  579 (780)
T 2z6g_A          500 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHIL  579 (780)
T ss_dssp             TCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHH
Confidence            764 99999999999997432221100000000                                               


Q ss_pred             ---chHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088          357 ---NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       357 ---~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  395 (431)
                         ...+..+.+.|+++.|..++.+++++++..|..+|..+.
T Consensus       580 a~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          580 ARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             TTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             hcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence               001123667889999999999999999999888777654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=1.8e-27  Score=210.43  Aligned_cols=240  Identities=27%  Similarity=0.399  Sum_probs=218.6

Q ss_pred             hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088           11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS   90 (431)
Q Consensus        11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   90 (431)
                      |.+|.++.     +| .++++++|..|+++|.+++..+++.+..+.+.|+++.|+++|+++++.++..++++|++++...
T Consensus         2 ~~i~~L~~-----~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~   75 (252)
T 4hxt_A            2 NDVEKLVK-----LL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP   75 (252)
T ss_dssp             CHHHHHHH-----HT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CcHHHHHH-----HH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            46777777     44 5666999999999999999988889999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 014088           91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY  169 (431)
Q Consensus        91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  169 (431)
                      +..+..+.+.|+++.++.++ .+++++++..++++|.+++... .........++++.+++++++++++++..++++|.+
T Consensus        76 ~~~~~~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~  154 (252)
T 4hxt_A           76 DEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN  154 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            88999999999999999999 6788999999999999999754 333334457899999999999999999999999999


Q ss_pred             hccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHH
Q 014088          170 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC  249 (431)
Q Consensus       170 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~  249 (431)
                      ++...+...+.+.+.|+++.|+.++.++++.++..++++|++++..++...+.+.+.|+++.|++++.++ ++.++..|+
T Consensus       155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~  233 (252)
T 4hxt_A          155 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQ  233 (252)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHH
Confidence            9998887778888999999999999999999999999999999998888888899999999999999988 899999999


Q ss_pred             HHHHHhhcC
Q 014088          250 WTISNITAG  258 (431)
Q Consensus       250 ~~L~nl~~~  258 (431)
                      ++|+|++..
T Consensus       234 ~~L~~l~~~  242 (252)
T 4hxt_A          234 RALENIKSG  242 (252)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            999999974

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=3.1e-27  Score=208.92  Aligned_cols=241  Identities=28%  Similarity=0.433  Sum_probs=222.7

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCC
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL  137 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  137 (431)
                      |.++.|+++|+++++.++..++++|.+++...+..+..+.+.|+++.+++++ .+.+++++..++++|++++.+. ....
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            6789999999999999999999999999998888899999999999999999 6678999999999999999885 3334


Q ss_pred             hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088          138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  217 (431)
Q Consensus       138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  217 (431)
                      .....++++.++.++++++++++..++++|.+++...+.....+.+.|+++.++.++.++++.++..++++|++++..++
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            44457899999999999999999999999999998777777888899999999999999999999999999999999888


Q ss_pred             hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                      .....+.+.++++.|++++.++ ++.++..|+++|++++..+++..+.+.+.|+++.|++++.+++++++..|+++|.++
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  239 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI  239 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            7878888999999999999988 899999999999999998899999999999999999999999999999999999999


Q ss_pred             cCCC
Q 014088          298 TSGG  301 (431)
Q Consensus       298 ~~~~  301 (431)
                      ....
T Consensus       240 ~~~~  243 (252)
T 4hxt_A          240 KSGG  243 (252)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            8754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=1.4e-27  Score=211.13  Aligned_cols=238  Identities=33%  Similarity=0.512  Sum_probs=215.0

Q ss_pred             hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh
Q 014088           12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP   91 (431)
Q Consensus        12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~   91 (431)
                      ..+.++.     .| +++++++|..|+++|.++...+.+.+..+.+.|+++.|+++|+++++.++..++++|++++...+
T Consensus        13 ~~~~~~~-----~L-~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~   86 (252)
T 4db8_A           13 ELPQMTQ-----QL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN   86 (252)
T ss_dssp             SHHHHHH-----HH-HSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             hHHHHHH-----HH-cCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence            4555555     44 56778999999999988766577888899999999999999999999999999999999999888


Q ss_pred             HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088           92 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYL  170 (431)
Q Consensus        92 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  170 (431)
                      ..+..+.+.|+++.++.++ +++++.++..++++|++++.+.+.. ......+++|.|+++++++++.++..++++|.++
T Consensus        87 ~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  165 (252)
T 4db8_A           87 EQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI  165 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            8999999999999999999 6678999999999999999886444 4455578999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH
Q 014088          171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW  250 (431)
Q Consensus       171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~  250 (431)
                      +...+.....+.+.|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.|++++.+. ++.++..|+|
T Consensus       166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~  244 (252)
T 4db8_A          166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQE  244 (252)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHH
T ss_pred             HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHH
Confidence            998888878888899999999999999999999999999999988888888889999999999999998 9999999999


Q ss_pred             HHHHhhc
Q 014088          251 TISNITA  257 (431)
Q Consensus       251 ~L~nl~~  257 (431)
                      +|+|++.
T Consensus       245 ~L~~l~~  251 (252)
T 4db8_A          245 ALEKLQS  251 (252)
T ss_dssp             HHHTTC-
T ss_pred             HHHHHhc
Confidence            9999974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=8.4e-27  Score=206.20  Aligned_cols=239  Identities=35%  Similarity=0.516  Sum_probs=217.4

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCC
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL  137 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  137 (431)
                      ...+.+.+.|+++++.++..++++|.++....+..+..+.+.|+++.|+++| ++++++++..++++|.+++.+. ....
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            4689999999999999999999999887655666788899999999999999 6677999999999999999865 3333


Q ss_pred             hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088          138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  217 (431)
Q Consensus       138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  217 (431)
                      .....+++|.++.++++++++++..++++|.+++.+.+.....+.+.|+++.|+.++.++++.++..++++|++++..++
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence            44457899999999999999999999999999999988776778899999999999999999999999999999999888


Q ss_pred             hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                      .....+.+.++++.|++++.++ ++.++..|+++|+|++..+++....+.+.|+++.|++++.+++++++..|+++|.++
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            8888888999999999999998 999999999999999988899999999999999999999999999999999999999


Q ss_pred             cC
Q 014088          298 TS  299 (431)
Q Consensus       298 ~~  299 (431)
                      +.
T Consensus       250 ~~  251 (252)
T 4db8_A          250 QS  251 (252)
T ss_dssp             C-
T ss_pred             hc
Confidence            75

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.94  E-value=8.9e-26  Score=201.44  Aligned_cols=236  Identities=16%  Similarity=0.154  Sum_probs=198.4

Q ss_pred             hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHH
Q 014088          157 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  235 (431)
Q Consensus       157 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l  235 (431)
                      .+-+..|+..|.+++.+.+ ....+.+.|+++.++. +|.++++.++..|+++|++++..++..++.+++.|+++.|+++
T Consensus        54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4568889999999998764 4456788899999999 9999999999999999999999999888999999999999999


Q ss_pred             hcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCCh
Q 014088          236 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI  315 (431)
Q Consensus       236 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l  315 (431)
                      |+++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.+++..++..|+|+|++++.. .++....+.+.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            98643789999999999999998888888899999999999999999999999999999999976 45788889999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 014088          316 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETY  394 (431)
Q Consensus       316 ~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~  394 (431)
                      +.|+.+++.+++++++.++.+|.+++.........+. ...+.+...|.+.     +..++.++ +.++++.|..++++|
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~-~~~~~l~~lL~~~-----~~~lq~~e~~~e~~~~~~~il~~~  285 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRHR-----CQLLQQHEEYQEELEFCEKLLQTC  285 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHHHHHHH-----HHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh-ccHHHHHHHHHHH-----HHHccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987443221100 0012245555543     66667666 899999999999999


Q ss_pred             cCCCCC
Q 014088          395 WVEEDE  400 (431)
Q Consensus       395 ~~~e~~  400 (431)
                      |.++++
T Consensus       286 f~~~~~  291 (296)
T 1xqr_A          286 FSSPAD  291 (296)
T ss_dssp             CC----
T ss_pred             cCCCCC
Confidence            987554

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=1.8e-23  Score=179.41  Aligned_cols=200  Identities=32%  Similarity=0.469  Sum_probs=178.1

Q ss_pred             hhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014088            8 FECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA   87 (431)
Q Consensus         8 ~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~   87 (431)
                      ...|..|.++.      |.++++++++..|+++|.+++..+++.+..+.+.|+++.|+++|+++++.++..++++|++++
T Consensus         9 ~~~~~~~~l~~------LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~   82 (210)
T 4db6_A            9 HHGSELPQMVQ------QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA   82 (210)
T ss_dssp             ----CHHHHHH------HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             cccchhHHHHH------HhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            34466666666      556788999999999999999888999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCChHHHHHHHHH
Q 014088           88 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWA  166 (431)
Q Consensus        88 ~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~  166 (431)
                      ...+..+..+.+.|+++.++.+| ++.++.++..++|+|++++.+.+.. ......+++|.|++++++++++++..++++
T Consensus        83 ~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a  161 (210)
T 4db6_A           83 SGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA  161 (210)
T ss_dssp             TSCHHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence            88888899999999999999999 7778999999999999999865322 233457899999999999999999999999


Q ss_pred             HHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088          167 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  214 (431)
Q Consensus       167 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  214 (431)
                      |.+++...+.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus       162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            999999877777888899999999999999999999999999999975

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=3.6e-23  Score=177.48  Aligned_cols=198  Identities=39%  Similarity=0.600  Sum_probs=184.8

Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhH
Q 014088          142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  221 (431)
Q Consensus       142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~  221 (431)
                      .+..+.+..++++++++++..++++|.+++...+.....+.+.|+++.++.+|.++++.++..++++|++++..++....
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            57888999999999999999999999999988888888899999999999999999999999999999999988888888


Q ss_pred             HHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088          222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       222 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      .+++.|+++.|+++|.++ ++.++..|+|+|+|++..+++....+++.|+++.|++++.+++..++..|+++|.+++...
T Consensus        91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  169 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            899999999999999999 9999999999999999988898899999999999999999999999999999999999854


Q ss_pred             CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088          302 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  341 (431)
Q Consensus       302 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~  341 (431)
                       ++....+.+.|+++.|..++++++++++..|+++|.++.
T Consensus       170 -~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          170 -NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             -HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             -cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence             577788889999999999999999999999999999885

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2e-22  Score=196.83  Aligned_cols=347  Identities=16%  Similarity=0.150  Sum_probs=265.8

Q ss_pred             hHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH-cCChHHHHHH
Q 014088           31 GAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQ  109 (431)
Q Consensus        31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~l~~~  109 (431)
                      ..+|..|+.+|.++..........+.  ...+.+.+.|.+++..-+..|++.|..++.+.. .+..+.. .+++..|+.+
T Consensus       308 ~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~l  384 (778)
T 3opb_A          308 EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTM  384 (778)
T ss_dssp             GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHH
Confidence            58999999999998763322211111  256777888887776669999999999988765 4555555 5559999999


Q ss_pred             hccccchhHHHHHHHHHHHhhcCCCCCC---------------------------------------hhhHhhhHHHHHH
Q 014088          110 FNEHAKLSMLRNATWTLSNFCRGKPQPL---------------------------------------FEQTRPALPALER  150 (431)
Q Consensus       110 l~~~~~~~~~~~a~~~L~~l~~~~~~~~---------------------------------------~~~~~~~i~~L~~  150 (431)
                      +....+..+..-++.+|.|++.+.+...                                       .....|++|.|+.
T Consensus       385 lk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~  464 (778)
T 3opb_A          385 IKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKR  464 (778)
T ss_dssp             HTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHH
T ss_pred             HhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHH
Confidence            9655778899999999999998653210                                       0112689999999


Q ss_pred             hhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcc---cHHHHHHHHhHhhcCChhhhHHHhh--
Q 014088          151 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS---VLIPALRTVGNIVTGDDMQTQCIIN--  225 (431)
Q Consensus       151 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---v~~~a~~~l~~l~~~~~~~~~~~~~--  225 (431)
                      ++.++++.++..++++|.+++.+. .....+++.|+++.|+.++.+....   .+..|+.+|.++....+...  ++.  
T Consensus       465 Ll~S~s~~~re~A~~aL~nLS~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~  541 (778)
T 3opb_A          465 EMHNLSPNCKQQVVRIIYNITRSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKY  541 (778)
T ss_dssp             HGGGSCHHHHHHHHHHHHHHHTSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSS
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCC
Confidence            999999999999999999999775 4556688899999999999886544   78999999999985443221  221  


Q ss_pred             --cCChHHHHHHhcccchh-------------hHHHHHHHHHHHhhcCC----HHHHHHHHHh-CCHHHHHHHHccCCHh
Q 014088          226 --HQALPCLLDLLTQNYKK-------------SIKKEACWTISNITAGN----VNQIQAIIEA-GIIGPLVNLLLNAEFE  285 (431)
Q Consensus       226 --~~~l~~L~~lL~~~~~~-------------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~  285 (431)
                        .++++.|+++|......             .-+.+|+.+|.|++..+    .+.++.+++. |+++.|.+++.+++..
T Consensus       542 ~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~  621 (778)
T 3opb_A          542 SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVP  621 (778)
T ss_dssp             CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHH
T ss_pred             ccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHH
Confidence              38899999999831111             12779999999999864    3456778884 9999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHH-HHHHHC------CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcch
Q 014088          286 IKKEAAWAISNATSGGSNEQI-KFLVSQ------GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL  358 (431)
Q Consensus       286 v~~~a~~aL~~l~~~~~~~~~-~~l~~~------~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~  358 (431)
                      +|+.|+++++|++...  +.. ..+...      +.++.|+.+++.++.+++..|.++|.++....+..           
T Consensus       622 VrrAA~elI~NL~~~~--e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-----------  688 (778)
T 3opb_A          622 LQRSTLELISNMMSHP--LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-----------  688 (778)
T ss_dssp             HHHHHHHHHHHHHTSG--GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-----------
T ss_pred             HHHHHHHHHHHHhCCc--HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-----------
Confidence            9999999999999754  332 233221      13778999999999999999999999996544332           


Q ss_pred             HHHHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 014088          359 FAQAIDDAEGLEKIENLQSH--DNTEIYEKAVKILETYWV  396 (431)
Q Consensus       359 ~~~~l~~~~~~~~l~~l~~~--~~~~v~~~a~~~l~~~~~  396 (431)
                      ...++...++++.+..+..+  ++++++.++..++.+++.
T Consensus       689 a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          689 AKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            24555556899999999777  899999999999999886

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=2.5e-22  Score=179.19  Aligned_cols=187  Identities=18%  Similarity=0.196  Sum_probs=169.3

Q ss_pred             hHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHH
Q 014088           31 GAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  109 (431)
Q Consensus        31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~  109 (431)
                      .+-+..|+..|.+++. +.++...+...|++|.|+. +|+++++.++..|+|+|++++.+++..+..+.+.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            3678899999999998 6678888999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 014088          110 FNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  188 (431)
Q Consensus       110 l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  188 (431)
                      |..+++..+++.|+|+|++++++.+. .......+++|.|+.+|++++..++..++|+|.+++.+.++.++.+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            96556889999999999999988633 23344478999999999999999999999999999988888888899999999


Q ss_pred             HHHHhcCCCCcccHHHHHHHHhHhhcCChh
Q 014088          189 RLVELLRHPSPSVLIPALRTVGNIVTGDDM  218 (431)
Q Consensus       189 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  218 (431)
                      .|+.+|.++++.++..++++|++++...+.
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~  242 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQ  242 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChh
Confidence            999999999999999999999999987543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.1e-22  Score=196.63  Aligned_cols=318  Identities=14%  Similarity=0.098  Sum_probs=251.2

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhC-CChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCh------
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP------   91 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~------   91 (431)
                      .++++|.++ +.+.+..|++.|..++. .++.|+.+++. |+++.|++++++ .+..+...++.+|.|++...+      
T Consensus       338 ~~~~~L~~~-~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~  415 (778)
T 3opb_A          338 IFINAISRR-IVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXX  415 (778)
T ss_dssp             HHHHHTTTC-CHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred             HHHHHHhcC-CccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhh
Confidence            455566644 44569999999999998 67888888765 679999999995 778899999999999986322      


Q ss_pred             -------------------------------H-HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088           92 -------------------------------K-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE  139 (431)
Q Consensus        92 -------------------------------~-~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  139 (431)
                                                     + .+..+.+.|+++.|+.++ .+.++.++..++|+|.+++.+...+...
T Consensus       416 ~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~l  494 (778)
T 3opb_A          416 XXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQL  494 (778)
T ss_dssp             C------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred             hhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                           0 356778899999999999 7788999999999999999886555556


Q ss_pred             hHhhhHHHHHHhhcCCChH---HHHHHHHHHHHhccCChHHHHHHHH---hCcHHHHHHhcCC-CCcc------------
Q 014088          140 QTRPALPALERLIHSNDDE---VLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELLRH-PSPS------------  200 (431)
Q Consensus       140 ~~~~~i~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll~~-~~~~------------  200 (431)
                      ...|+++.|+.++.+....   .+..|+.+|.++....+...- +-.   .++++.|+.+|.. +...            
T Consensus       495 vqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~-f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~  573 (778)
T 3opb_A          495 AQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI-FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL  573 (778)
T ss_dssp             HHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH-SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred             HHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH-cCCCccccchHHHHHHcCCCCCcccccccccccccH
Confidence            6689999999999977544   899999999999854432221 111   3889999999983 2211            


Q ss_pred             -cHHHHHHHHhHhhcCCh----hhhHHHhhc-CChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHH-HHHHH-----
Q 014088          201 -VLIPALRTVGNIVTGDD----MQTQCIINH-QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI-QAIIE-----  268 (431)
Q Consensus       201 -v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~-----  268 (431)
                       -+..|+.+|.||+..++    ..++.++.. ++++.|.++|.++ +..+|+.|+++++|++.. ++.+ +.+.+     
T Consensus       574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~  651 (778)
T 3opb_A          574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQ  651 (778)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHH
T ss_pred             HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCch
Confidence             16789999999999762    345667775 8999999999988 899999999999999985 4432 23322     


Q ss_pred             -hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHC-CChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhh
Q 014088          269 -AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNC--PDPRIVTVCLEGLENILKAG  344 (431)
Q Consensus       269 -~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~--~~~~v~~~al~~L~~l~~~~  344 (431)
                       .+.++.|+.++..++.++|+.|.++|++++... +..++.+++. ++++.++.+++.  ++++++..++.++.|++...
T Consensus       652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~-~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATTI-PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence             123788999999999999999999999996533 3566777776 789999999987  89999999999999999743

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=1.2e-21  Score=167.25  Aligned_cols=197  Identities=18%  Similarity=0.118  Sum_probs=167.0

Q ss_pred             hhhhhhHHHHHhhhccCCCh--HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 014088           12 LISLFVDQFFFHCFFSCCFG--AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD   89 (431)
Q Consensus        12 ~~~~~v~~~lv~~L~~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~   89 (431)
                      .+|.+|.      +.+++++  ++|..|+++|.+++..+++.+..+++.|+||.|+++|+++++.+++.|+|+|.||+.+
T Consensus         9 ~i~~lV~------lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~   82 (233)
T 3tt9_A            9 TLERAVS------MLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE   82 (233)
T ss_dssp             CHHHHHH------TCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHH------HhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            4566666      4456667  8999999999999988899999999999999999999999999999999999999998


Q ss_pred             ChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc----------------
Q 014088           90 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------------  153 (431)
Q Consensus        90 ~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----------------  153 (431)
                      +++++..+.+.|++++|+++|.++.+.++++.++.+|++|+...... .....+.+|.|+.++.                
T Consensus        83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~  161 (233)
T 3tt9_A           83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANG  161 (233)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred             CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccc
Confidence            88899999999999999999965678999999999999999875333 3333567898887653                


Q ss_pred             CCChHHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCcccHHHHHHHHhHhhcC
Q 014088          154 SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG  215 (431)
Q Consensus       154 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~  215 (431)
                      ..+++++.++..+|.|++..+++..+.+.+. |+++.|+.+++.      .+...++.++.+|.||++.
T Consensus       162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            1367999999999999998876666767765 778999999864      3567889999999999874

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.81  E-value=3.1e-19  Score=152.26  Aligned_cols=197  Identities=17%  Similarity=0.196  Sum_probs=168.2

Q ss_pred             hhHHHHHHhhcCCCh--HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhh
Q 014088          143 PALPALERLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT  220 (431)
Q Consensus       143 ~~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~  220 (431)
                      -.+|.++++|+++++  +++..+++++.+++..++.....+.+.|+++.|+.+|.++++.++..|+++|.|++..++.++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            468999999999988  899999999999998777777789999999999999999999999999999999999888888


Q ss_pred             HHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHc----------------cCCH
Q 014088          221 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL----------------NAEF  284 (431)
Q Consensus       221 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----------------~~~~  284 (431)
                      ..+.+.|+++.|+++|.+..+.++++.|+.+|.||+.. ++.+..+.+. .++.|++++.                ..+.
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence            99999999999999998532789999999999999876 4556666664 5888888653                1256


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHC-CChHHHHhhcCC------CCHHHHHHHHHHHHHHHH
Q 014088          285 EIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNC------PDPRIVTVCLEGLENILK  342 (431)
Q Consensus       285 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~------~~~~v~~~al~~L~~l~~  342 (431)
                      +++.+|..+|.|++..+ ++.++.+.+. |+++.|+.+++.      .+.+.++.++.+|.|+..
T Consensus       166 ~v~~na~~~L~nLss~~-~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAG-ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHHHHHHTTSC-HHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhcCC-HHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            89999999999999864 5778888775 678999999874      256889999999999864

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.75  E-value=1.1e-16  Score=158.79  Aligned_cols=334  Identities=12%  Similarity=0.124  Sum_probs=245.9

Q ss_pred             ccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHcCChH
Q 014088           26 FSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALM  104 (431)
Q Consensus        26 ~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~  104 (431)
                      .+++++.+|..++.+|+.++.....   ......+++.++.+++++++.+|..++++|+.++...+ ..+........++
T Consensus       251 ~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p  327 (588)
T 1b3u_A          251 AEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP  327 (588)
T ss_dssp             HTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHH
Confidence            3456678999999999988752111   12234578999999999999999999999999985432 1111122234567


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088          105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA  184 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  184 (431)
                      .+..++ .++++.+|..++++|..++..-+.  ......++|.+..++++.+++++..++.++..+.......   ....
T Consensus       328 ~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~  401 (588)
T 1b3u_A          328 CIKELV-SDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQ  401 (588)
T ss_dssp             HHHHHH-TCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHH
T ss_pred             HHHHHh-cCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHH
Confidence            777777 778899999999999998764211  1223568899999999999999999999998887543321   1123


Q ss_pred             CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHH
Q 014088          185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQI  263 (431)
Q Consensus       185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~  263 (431)
                      .+++.+..++.+.++.++..++.+++.++......   .....+++.+...+.++ +..+|..|+.+++.++.. .++  
T Consensus       402 ~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~--  475 (588)
T 1b3u_A          402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE--  475 (588)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch--
Confidence            57788888888889999999999999987532111   11224678888899888 899999999999999863 222  


Q ss_pred             HHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088          264 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       264 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~  343 (431)
                        .....++|.+..++.++++.+|..++++++.++...+.+    .....+++.|..+++++++.++..++++|..+...
T Consensus       476 --~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          476 --WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             --HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             --hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence              122457888888888889999999999999997643211    12345889999999999999999999999999865


Q ss_pred             hhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088          344 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  395 (431)
                      .+..           +   + ....++.|..+.++++++++..|..++..+-
T Consensus       550 ~~~~-----------~---~-~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          550 LDNS-----------T---L-QSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             SCHH-----------H---H-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             hchh-----------h---h-HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            4321           1   1 1345667778889999999999999998764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.73  E-value=1e-16  Score=165.95  Aligned_cols=355  Identities=15%  Similarity=0.141  Sum_probs=251.0

Q ss_pred             hhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH
Q 014088           15 LFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR   94 (431)
Q Consensus        15 ~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   94 (431)
                      ..+++.+++.|. ++++.+|..++.+++.++......    .-.+.++.|++.+.++++.+++.++.+|+.++...+...
T Consensus        89 ~~ik~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~  163 (852)
T 4fdd_A           89 DFIKSECLNNIG-DSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL  163 (852)
T ss_dssp             HHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence            345556666765 566799999999999998633110    113689999999999999999999999999986443211


Q ss_pred             HHHH----HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088           95 DLVL----SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  170 (431)
Q Consensus        95 ~~i~----~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  170 (431)
                      ..-.    -...++.+++.+ .++++.+|..|++++..+....+.........+++.+..++.+++++++..++++|..+
T Consensus       164 ~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l  242 (852)
T 4fdd_A          164 DSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML  242 (852)
T ss_dssp             HHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             chhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            1000    012355556666 57789999999999998876543222223357889999999999999999999999999


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhh---cCChHHHHHHh-----------
Q 014088          171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQALPCLLDLL-----------  236 (431)
Q Consensus       171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~l~~L~~lL-----------  236 (431)
                      +...+........ ++++.+...+.+.++.++..++.++..++.... . ...+.   ..+++.+++.+           
T Consensus       243 ~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~  319 (852)
T 4fdd_A          243 LEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLK  319 (852)
T ss_dssp             HHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhc
Confidence            9876654433333 577888888888889999999999999886432 1 11221   13456666665           


Q ss_pred             cc--c--------chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHH
Q 014088          237 TQ--N--------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  306 (431)
Q Consensus       237 ~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  306 (431)
                      .+  .        .+..+|..|+.+++.++...++   .++. .+++.+.+.+.++++.+|..|++++++++........
T Consensus       320 ~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~  395 (852)
T 4fdd_A          320 GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI  395 (852)
T ss_dssp             C------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG
T ss_pred             CCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH
Confidence            22  0        1345799999999999863221   1222 3677788888888999999999999999987643222


Q ss_pred             HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 014088          307 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  386 (431)
Q Consensus       307 ~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~  386 (431)
                      ..  -.++++.+...++++++.++..+++++.++.........          ...+  .+.++.|...+.+++++++..
T Consensus       396 ~~--l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----------~~~~--~~ll~~L~~~L~d~~~~vr~~  461 (852)
T 4fdd_A          396 PY--LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP----------DTYL--KPLMTELLKRILDSNKRVQEA  461 (852)
T ss_dssp             GG--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT----------TTTH--HHHHHHHHHHHTCSSHHHHHH
T ss_pred             HH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH----------HHHH--HHHHHHHHHHHhCCCHHHHHH
Confidence            22  234788999999999999999999999999875433110          1111  234566777777889999999


Q ss_pred             HHHHHHHhcC
Q 014088          387 AVKILETYWV  396 (431)
Q Consensus       387 a~~~l~~~~~  396 (431)
                      |.+++..+..
T Consensus       462 a~~aL~~l~~  471 (852)
T 4fdd_A          462 ACSAFATLEE  471 (852)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.73  E-value=4.2e-17  Score=168.84  Aligned_cols=313  Identities=13%  Similarity=0.147  Sum_probs=223.6

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHH-HH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHH
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRV-VI---DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL   96 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~-~~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   96 (431)
                      +++.+ .++++.++..++.+|+.++...++.... ..   -..+++.++++++++++.+|..|+++|.++....+.....
T Consensus       133 L~~~l-~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~  211 (852)
T 4fdd_A          133 LCSLL-DSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML  211 (852)
T ss_dssp             HHHHH-SCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT
T ss_pred             HHHHH-cCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH
Confidence            33355 4567899999999999998643322111 00   1246778888888899999999999999988654321110


Q ss_pred             HHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014088           97 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  176 (431)
Q Consensus        97 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  176 (431)
                      . -...++.+...+ .+++++++..++++|..++...+.........+++.+..++.+.+++++..++.++..++.....
T Consensus       212 ~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~  289 (852)
T 4fdd_A          212 H-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC  289 (852)
T ss_dssp             S-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH
T ss_pred             H-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH
Confidence            0 113566777777 67889999999999999998754332234467888899999999999999999999999876422


Q ss_pred             HHHHHHH---hCcHHHHHHhc-----------CC-----------CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHH
Q 014088          177 KIQAVIE---AGVCPRLVELL-----------RH-----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC  231 (431)
Q Consensus       177 ~~~~~~~---~~~i~~L~~ll-----------~~-----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  231 (431)
                      . + ...   ..+++.++..+           .+           .+..++..+..++..++...+..   ++ ..+++.
T Consensus       290 ~-~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~  363 (852)
T 4fdd_A          290 K-D-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPL  363 (852)
T ss_dssp             H-H-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHH
T ss_pred             H-H-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHH
Confidence            1 1 111   14556666666           23           23467889999999998644322   11 146778


Q ss_pred             HHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHH-HHHHHH
Q 014088          232 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLV  310 (431)
Q Consensus       232 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~  310 (431)
                      +.+.+.++ ++.+|..|++++++++.+..+...... .++++.++..+.++++.||..|++++++++....+. ....  
T Consensus       364 l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--  439 (852)
T 4fdd_A          364 LKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--  439 (852)
T ss_dssp             HHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--
T ss_pred             HHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--
Confidence            88888888 899999999999999987665444333 347899999999999999999999999997532100 0011  


Q ss_pred             HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          311 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       311 ~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                      -.++++.|...++..++.++..++++|.++++....
T Consensus       440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~  475 (852)
T 4fdd_A          440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT  475 (852)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence            123577888888888999999999999999976553

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.71  E-value=9.8e-16  Score=151.96  Aligned_cols=298  Identities=14%  Similarity=0.088  Sum_probs=220.2

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  104 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  104 (431)
                      +..++++.+|..|+.+|.+++...+..   .....+++.+..+.++++..+|..++.+++.++...+..    .....++
T Consensus        95 l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~~~~l~~  167 (588)
T 1b3u_A           95 LATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQ  167 (588)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----HHHHHHH
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----HHHHHHH
Confidence            445667899999999999998754432   122245777777778888899999999999887654321    1122456


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088          105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA  184 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  184 (431)
                      .+..++ .++++.+|..++.+|..++...+.  ......++|.+..+++++++.+|..++.++..++...+..   ....
T Consensus       168 ~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~  241 (588)
T 1b3u_A          168 YFRNLC-SDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEA  241 (588)
T ss_dssp             HHHHHH-TCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHH
T ss_pred             HHHHHh-CCCCHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHH
Confidence            666666 788999999999999999876421  2334678999999999999999999999999988654322   1223


Q ss_pred             CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-HHH
Q 014088          185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQI  263 (431)
Q Consensus       185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~  263 (431)
                      .+++.+..++.++++.+|..++.+++.++...+.   ......+++.+.+++.++ ++.+|..|+++++.++.... +..
T Consensus       242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~  317 (588)
T 1b3u_A          242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhChhhh
Confidence            5778888888889999999999999999864221   122346789999999988 89999999999999987322 211


Q ss_pred             HHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088          264 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       264 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~  343 (431)
                      .......++|.+..++.++++.+|..++++|..++.....+.    ....+++.+..+++++++.++..++.++..+...
T Consensus       318 ~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~  393 (588)
T 1b3u_A          318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN----TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV  393 (588)
T ss_dssp             HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH----HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH----HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence            112234578889999999999999999999999875433221    1223678888888888888998888888877654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.70  E-value=1.2e-15  Score=136.53  Aligned_cols=255  Identities=15%  Similarity=0.145  Sum_probs=196.2

Q ss_pred             hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088           11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS   90 (431)
Q Consensus        11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   90 (431)
                      +.++.++.     .| .++++.+|..|+++|+++..           .+.++.|+.+|+++++.+|..++++|+.+....
T Consensus        23 ~~i~~L~~-----~L-~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~   85 (280)
T 1oyz_A           23 LNDDELFR-----LL-DDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK   85 (280)
T ss_dssp             SCHHHHHH-----HT-TCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT
T ss_pred             hhHHHHHH-----HH-HcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc
Confidence            45566666     55 56789999999999999873           146889999999999999999999999987433


Q ss_pred             hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088           91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  170 (431)
Q Consensus        91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  170 (431)
                      .... .     .++.+...+..++++.++..++++|+.+....+    ......++.+..+++++++.++..++++|+++
T Consensus        86 ~~~~-~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~  155 (280)
T 1oyz_A           86 KCED-N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVI  155 (280)
T ss_dssp             TTHH-H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             ccch-H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence            2211 1     223343333377889999999999999975421    12346789999999999999999999999987


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH
Q 014088          171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW  250 (431)
Q Consensus       171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~  250 (431)
                      ..           .+.++.|+.++.++++.++..++++|+.+....+         ..++.|.+.+.++ ++.+|..|++
T Consensus       156 ~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~  214 (280)
T 1oyz_A          156 ND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAII  214 (280)
T ss_dssp             --------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred             CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHH
Confidence            53           2578999999999999999999999999853322         3467889999888 8999999999


Q ss_pred             HHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CCHHH
Q 014088          251 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRI  329 (431)
Q Consensus       251 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v  329 (431)
                      +|+++..           ...++.|+..+.+++  ++..|+++|+.+..            ...++.|.++++. +++++
T Consensus       215 aL~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------~~~~~~L~~~l~~~~~~~~  269 (280)
T 1oyz_A          215 GLSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEI  269 (280)
T ss_dssp             HHHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHH
T ss_pred             HHHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------hhhhHHHHHHHhcCCCcHH
Confidence            9999862           247888899888754  88999999999853            1367888888864 56677


Q ss_pred             HHHHHHHHH
Q 014088          330 VTVCLEGLE  338 (431)
Q Consensus       330 ~~~al~~L~  338 (431)
                      ...+...|.
T Consensus       270 ~~~~~~~l~  278 (280)
T 1oyz_A          270 ITSAIDKLK  278 (280)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            777776664

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.69  E-value=4.9e-15  Score=141.36  Aligned_cols=317  Identities=12%  Similarity=0.122  Sum_probs=243.4

Q ss_pred             hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChH---------
Q 014088           24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPK---------   92 (431)
Q Consensus        24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~---------   92 (431)
                      .+.++.-.+-|+.|+..|..++..   .+..+. .++++.|+..|+.  .+.++...++.+|.++....+.         
T Consensus        29 Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~  104 (651)
T 3grl_A           29 RVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTR  104 (651)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-----------
T ss_pred             HHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccc
Confidence            677777789999999999999863   444444 4679999999976  6789999999999887643321         


Q ss_pred             --------HH-HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChh-h-HhhhHHHHHHhhcCCChHHH
Q 014088           93 --------CR-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFE-Q-TRPALPALERLIHSNDDEVL  160 (431)
Q Consensus        93 --------~~-~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~-~-~~~~i~~L~~lL~~~~~~v~  160 (431)
                              +. ..+.+.+.++.|+.+| ++.+-.+|.+++.+|..++...+. .+.. . ..++++.|+.+|.++...+|
T Consensus       105 ~~~~~~~~~~d~f~~~~~~i~~Ll~lL-~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iR  183 (651)
T 3grl_A          105 QSEDLGSQFTEIFIKQQENVTLLLSLL-EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIR  183 (651)
T ss_dssp             ---CHHHHHHHHHHHSTHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHH
T ss_pred             cchHHHHHHHHHHHcCCccHHHHHHHh-cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHH
Confidence                    11 1234567799999999 788999999999999999988744 2222 2 25899999999999999999


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCc----ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHh
Q 014088          161 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP----SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL  236 (431)
Q Consensus       161 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL  236 (431)
                      ..++..|.+++.++++..+.+.-.|+++.|+.++..+..    .+...|+.++.||...+..+...+.+.++++.|..++
T Consensus       184 neallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL  263 (651)
T 3grl_A          184 NDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF  263 (651)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh
Confidence            999999999999998776666666999999999977443    6778899999999999998888888999999999999


Q ss_pred             cccchh------hHH--HHHHHHHHHhhcC------CHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCC
Q 014088          237 TQNYKK------SIK--KEACWTISNITAG------NVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG  300 (431)
Q Consensus       237 ~~~~~~------~v~--~~a~~~L~nl~~~------~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~  300 (431)
                      +.+.+.      +++  ..+..++.-++..      +..+...+.+.|+++.|++++...  ...++..|+.+++.++..
T Consensus       264 ~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg  343 (651)
T 3grl_A          264 EVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRG  343 (651)
T ss_dssp             CCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC
Confidence            755211      111  1245555556553      335667888999999999999876  678999999999999987


Q ss_pred             CCHHHHHHHHHCC---------ChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhh
Q 014088          301 GSNEQIKFLVSQG---------CIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       301 ~~~~~~~~l~~~~---------~l~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~  346 (431)
                      + +.....+.+..         ++..|..++.+. ...++..++.++..++.....
T Consensus       344 N-~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~  398 (651)
T 3grl_A          344 C-QVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK  398 (651)
T ss_dssp             C-HHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             C-HHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence            6 35555555533         233344556544 468899999999999877653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.69  E-value=5.1e-14  Score=134.39  Aligned_cols=373  Identities=12%  Similarity=0.138  Sum_probs=264.8

Q ss_pred             hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChH-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088           11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSE-NTRVVIDH-GAVPIFVRLLSSPTDDVREQAVWALGNVAG   88 (431)
Q Consensus        11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   88 (431)
                      +.++.++.      |.++++-.+|..++.+|..++...++ .++.+... ++++.|+.+|+++.+.+|..++..|.+++.
T Consensus       122 ~~i~~Ll~------lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~  195 (651)
T 3grl_A          122 ENVTLLLS------LLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR  195 (651)
T ss_dssp             HHHHHHHH------HTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHH------HhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence            45666666      45677889999999999999987766 77888855 999999999999999999999999999999


Q ss_pred             CChHHHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCC-CCChhhHhhhHHHHHHhhcCCChH------
Q 014088           89 DSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDE------  158 (431)
Q Consensus        89 ~~~~~~~~i~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~------  158 (431)
                      ++++.++.+.-.|+++.|+.++....   ...+...++.++.+|.++++ ........+.+|.|..+++.++..      
T Consensus       196 ~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Q  275 (651)
T 3grl_A          196 SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQ  275 (651)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHH
T ss_pred             CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHH
Confidence            99999999999999999999995322   34788899999999999974 334455588999999999754321      


Q ss_pred             HHHH---HHHHHHHhccCC------hHHHHHHHHhCcHHHHHHhcCCC--CcccHHHHHHHHhHhhcCChhhhHHHhhcC
Q 014088          159 VLTD---ACWALSYLSDGT------NDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ  227 (431)
Q Consensus       159 v~~~---a~~~L~~l~~~~------~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  227 (431)
                      ...+   ++.++.-+....      ......+.+.|+++.+++++..+  ...++..|+.+++.+..+++.....+....
T Consensus       276 k~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~  355 (651)
T 3grl_A          276 KVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVN  355 (651)
T ss_dssp             HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence            2233   555555555431      23445688899999999998765  467889999999999999987776665432


Q ss_pred             ---------ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHh----------CC---HHHHHHHHccCCHh
Q 014088          228 ---------ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA----------GI---IGPLVNLLLNAEFE  285 (431)
Q Consensus       228 ---------~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~---i~~L~~ll~~~~~~  285 (431)
                               ++..|+.++.+.....+|..|+.++.....++++....++..          ..   -..+..-+.+.++-
T Consensus       356 vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~  435 (651)
T 3grl_A          356 APSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSL  435 (651)
T ss_dssp             ESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHH
T ss_pred             CCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchH
Confidence                     233344445555468999999999999999888766555542          00   11234444455553


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHH--------C---CChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 014088          286 IKKEAAWAISNATSGGSNEQIKFLVS--------Q---GCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNT  353 (431)
Q Consensus       286 v~~~a~~aL~~l~~~~~~~~~~~l~~--------~---~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~  353 (431)
                      -.--|+.++.++...+ ++....+.+        .   ..++.+..++.. .++.++..-+..|...+..+...      
T Consensus       436 ~~wfAavil~hll~~n-~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~A------  508 (651)
T 3grl_A          436 SNWCAAVALAHALQEN-ATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA------  508 (651)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH------
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHH------
Confidence            3345777888888765 233333222        1   115555666643 45666655566666666554433      


Q ss_pred             CCcchHHHHHHhhccHHHHHHhhcC--C--CHHHHHHHHHHHHHhcCCCCCC
Q 014088          354 GGVNLFAQAIDDAEGLEKIENLQSH--D--NTEIYEKAVKILETYWVEEDED  401 (431)
Q Consensus       354 ~~~~~~~~~l~~~~~~~~l~~l~~~--~--~~~v~~~a~~~l~~~~~~e~~~  401 (431)
                           +..++.+...++.|.+...+  .  +.-|+-.+.-+|..++...+++
T Consensus       509 -----V~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~~~  555 (651)
T 3grl_A          509 -----VTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFNDNS  555 (651)
T ss_dssp             -----HHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             -----HHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence                 56778777778888866432  2  3457888888888877766554

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.68  E-value=2.6e-14  Score=141.28  Aligned_cols=294  Identities=16%  Similarity=0.184  Sum_probs=210.0

Q ss_pred             cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      .++++.+|..|+++|+++..  ++....     +++.+.+++.++++.+|..|++++.+++...++.   +...+.++.+
T Consensus        96 ~~~n~~ir~~AL~~L~~i~~--~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l  165 (591)
T 2vgl_B           96 EDPNPLIRALAVRTMGCIRV--DKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSL  165 (591)
T ss_dssp             SSSSHHHHHHHHHHHHTCCS--GGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHcCCh--HHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHH
Confidence            46778999999999988863  443333     4678999999999999999999999998755542   2223567888


Q ss_pred             HHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhC
Q 014088          107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG  185 (431)
Q Consensus       107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  185 (431)
                      ..+| .++++.++..|+++|..++...+.. ........++.++..+.+.++-.+..++.++..+....+....     .
T Consensus       166 ~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~  239 (591)
T 2vgl_B          166 RDLI-ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----S  239 (591)
T ss_dssp             HHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----H
T ss_pred             HHHh-CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----H
Confidence            8888 7889999999999999999886533 2333456677888888888888999999999888865543322     4


Q ss_pred             cHHHHHHhcCCCCcccHHHHHHHHhHhhcC---ChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHH-
Q 014088          186 VCPRLVELLRHPSPSVLIPALRTVGNIVTG---DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-  261 (431)
Q Consensus       186 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-  261 (431)
                      +++.+..++++.++.|+..|++++..+...   ++...+.+. ..+.+.|+.++. + ++.+|..|+.+++.+....++ 
T Consensus       240 ~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~  316 (591)
T 2vgl_B          240 ICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEI  316 (591)
T ss_dssp             HHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCST
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHH
Confidence            677888889999999999999999998742   233333222 245566665553 4 677777777777776631111 


Q ss_pred             -----------------HHH----HHH---Hh----CCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 014088          262 -----------------QIQ----AII---EA----GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG  313 (431)
Q Consensus       262 -----------------~~~----~l~---~~----~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  313 (431)
                                       .+.    .+.   +.    .+++.|...+.+.+.+++..++++|+.++.... ....     .
T Consensus       317 ~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~-~~~~-----~  390 (591)
T 2vgl_B          317 LKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE-QSAE-----R  390 (591)
T ss_dssp             TTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH-HHHH-----H
T ss_pred             HHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh-hHHH-----H
Confidence                             001    010   11    245566677777789999999999999988653 2222     2


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  345 (431)
                      +++.|.++++.....+...++.++..+++...
T Consensus       391 ~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p  422 (591)
T 2vgl_B          391 CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP  422 (591)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence            57888888888888888888888888876543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.68  E-value=8.2e-15  Score=131.12  Aligned_cols=257  Identities=16%  Similarity=0.127  Sum_probs=196.8

Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 014088           56 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  135 (431)
Q Consensus        56 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  135 (431)
                      .+.+.++.|+..|+++++.+|..|+++|+++..  +         +.++.++..+ .++++.++..++++|..+..... 
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l-~d~~~~vR~~A~~aL~~l~~~~~-   86 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFC-SDKNYIRRDIGAFILGQIKICKK-   86 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHH-TCSSHHHHHHHHHHHHHSCCCTT-
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHH-cCCCHHHHHHHHHHHHHhccccc-
Confidence            345789999999999999999999999999862  2         2467888888 77889999999999999864321 


Q ss_pred             CChhhHhhhHHHHH-HhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhc
Q 014088          136 PLFEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  214 (431)
Q Consensus       136 ~~~~~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~  214 (431)
                          ....+++.+. .+++++++.++..++++|+++....+....     .+++.+...+.++++.++..++.+|+++..
T Consensus        87 ----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           87 ----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             ----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             ----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence                1223555555 356788999999999999998754332222     457888999999999999999999998753


Q ss_pred             CChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHH
Q 014088          215 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI  294 (431)
Q Consensus       215 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  294 (431)
                                 ...++.|.+++.++ ++.+|..|+++|+++....+.         .++.|+.++.++++.+|..|+++|
T Consensus       158 -----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHH
Confidence                       24789999999998 999999999999998654343         467888899999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHH
Q 014088          295 SNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN  374 (431)
Q Consensus       295 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  374 (431)
                      +++..            ...++.|...++.++  ++..+..+|..+-.                       ...++.|..
T Consensus       217 ~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------------------~~~~~~L~~  259 (280)
T 1oyz_A          217 SYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD-----------------------KTLLPVLDT  259 (280)
T ss_dssp             HHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------------------GGGHHHHHH
T ss_pred             HHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------------------hhhhHHHHH
Confidence            99852            236777888887644  77788888876521                       123555666


Q ss_pred             hh-cCCCHHHHHHHHHHHH
Q 014088          375 LQ-SHDNTEIYEKAVKILE  392 (431)
Q Consensus       375 l~-~~~~~~v~~~a~~~l~  392 (431)
                      ++ .++++++...+...+.
T Consensus       260 ~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          260 MLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHTTSSCCHHHHHHHHHHT
T ss_pred             HHhcCCCcHHHHHHHHHhh
Confidence            54 4567777777776654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.60  E-value=3e-14  Score=147.72  Aligned_cols=321  Identities=13%  Similarity=0.220  Sum_probs=217.8

Q ss_pred             hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCCh-HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088           12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS   90 (431)
Q Consensus        12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   90 (431)
                      ++|.++ +.+.+.+. ++++..|..|+++++.++.... +....... .+++.++..+.++++.+|..++|+++.++...
T Consensus       366 ~~~~l~-~~l~~~l~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  442 (861)
T 2bpt_A          366 ILEPVL-EFVEQNIT-ADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSV  442 (861)
T ss_dssp             GHHHHH-HHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHcC-CCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence            344333 34445554 5668999999999999997542 32222222 57899999999999999999999999998431


Q ss_pred             hHH---HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC----CCChhhHhhhHHHHHHhhcCCC--hHHHH
Q 014088           91 PKC---RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP----QPLFEQTRPALPALERLIHSND--DEVLT  161 (431)
Q Consensus        91 ~~~---~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~i~~L~~lL~~~~--~~v~~  161 (431)
                      ...   ...+  ...++.++..+ .+. +.++..+++++.+++....    .........+++.+...+.+.+  +.++.
T Consensus       443 ~~~~~~~~~~--~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~  518 (861)
T 2bpt_A          443 AESIDPQQHL--PGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARA  518 (861)
T ss_dssp             GGGSCTTTTH--HHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHH
T ss_pred             hhhcCCHHHH--HHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHH
Confidence            110   0011  12466777777 443 8899999999999987532    1122344678888889998543  78999


Q ss_pred             HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC---------------CCcccHHHHHHHHhHhhcCChhhhHHHhhc
Q 014088          162 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH---------------PSPSVLIPALRTVGNIVTGDDMQTQCIINH  226 (431)
Q Consensus       162 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  226 (431)
                      .++.+++.++...+........ .+++.++..+..               ....++..++.++.+++...+........ 
T Consensus       519 ~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-  596 (861)
T 2bpt_A          519 SAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-  596 (861)
T ss_dssp             HHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-
T ss_pred             HHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-
Confidence            9999999998665443322222 355555555532               13456778899999988655432222222 


Q ss_pred             CChHHHHHHhcccchh-hHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHH
Q 014088          227 QALPCLLDLLTQNYKK-SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ  305 (431)
Q Consensus       227 ~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  305 (431)
                      .+++.+.+.+.+. +. .++..++++++.++............ .+++.+...+..+++.++..++.+++.++.......
T Consensus       597 ~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~  674 (861)
T 2bpt_A          597 MLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDF  674 (861)
T ss_dssp             HHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGG
T ss_pred             HHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhc
Confidence            4677788888777 56 89999999999998632222223333 278889999987888999999999999886544322


Q ss_pred             HHHHHHCCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhhh
Q 014088          306 IKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       306 ~~~l~~~~~l~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~  345 (431)
                      ..++  ..+++.+.+.++.++  ++++..++.++..++....
T Consensus       675 ~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~  714 (861)
T 2bpt_A          675 RRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG  714 (861)
T ss_dssp             HHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred             cchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence            2222  236777777777654  7899999999999988654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.60  E-value=1.2e-13  Score=136.67  Aligned_cols=297  Identities=17%  Similarity=0.143  Sum_probs=207.6

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  104 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  104 (431)
                      +.++++..+|..+...+..++..+++..     .-+++.+.+-|+++++.+|..|+.+|+++.  .++....     .++
T Consensus        57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~  124 (591)
T 2vgl_B           57 CMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCE  124 (591)
T ss_dssp             TTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHH
Confidence            4457778999888888888876444332     135778888899999999999999999986  3333222     356


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088          105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA  184 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  184 (431)
                      .+.+.+ .++++.+|+.|++++.++....+.  .....++++.+.++|.++++.++..|+.+|..++...++....-...
T Consensus       125 ~l~~~L-~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~  201 (591)
T 2vgl_B          125 PLRKCL-KDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNP  201 (591)
T ss_dssp             HHHHHS-SCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHH
T ss_pred             HHHHHc-CCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccH
Confidence            788888 688999999999999999986543  22235789999999999999999999999999997754220000011


Q ss_pred             CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc---CCHH
Q 014088          185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVN  261 (431)
Q Consensus       185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~  261 (431)
                      +.+..++..+...++-.+...+++++.++..++....     .+++.+...+++. ++.++.+|++++..+..   .+++
T Consensus       202 ~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~~~~~~  275 (591)
T 2vgl_B          202 QNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHA-NSAVVLSAVKVLMKFLELLPKDSD  275 (591)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSCCBTTB
T ss_pred             HHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhccCCCHH
Confidence            3355666666667777788888888888765443322     4567788888888 99999999999999874   2344


Q ss_pred             HHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC-----------------CHH----HHHHHH---HC----C
Q 014088          262 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG-----------------SNE----QIKFLV---SQ----G  313 (431)
Q Consensus       262 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-----------------~~~----~~~~l~---~~----~  313 (431)
                      ..+.+.. .+.+.|+.++. +++.+|..|+.+|..+....                 ...    ....+.   +.    .
T Consensus       276 ~~~~~~~-~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~  353 (591)
T 2vgl_B          276 YYNMLLK-KLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ  353 (591)
T ss_dssp             SHHHHHH-HTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHH
T ss_pred             HHHHHHH-HHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHH
Confidence            4443332 35666666553 67788888888877775411                 000    111111   11    1


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAG  344 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~  344 (431)
                      +++.|..+++..+.+++..++++|.++....
T Consensus       354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~  384 (591)
T 2vgl_B          354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKV  384 (591)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence            3556667777788899999999998887644

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.59  E-value=6.6e-14  Score=145.20  Aligned_cols=338  Identities=14%  Similarity=0.168  Sum_probs=227.9

Q ss_pred             ChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh-H-HHHHHHHcCChHHHH
Q 014088           30 FGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-K-CRDLVLSNGALMPLL  107 (431)
Q Consensus        30 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~-~~~~i~~~~~i~~l~  107 (431)
                      +..++..+..+|..++....+   .+. ..+++.+.+.+.+.++.+|+.++++++.++.... . ....+.  ..++.++
T Consensus       344 ~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~  417 (861)
T 2bpt_A          344 DWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSIL  417 (861)
T ss_dssp             CCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHH
Confidence            357899999999988762221   111 1356677777788899999999999999997642 2 222222  3567777


Q ss_pred             HHhccccchhHHHHHHHHHHHhhcCCCC--CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh----HHHHHH
Q 014088          108 AQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN----DKIQAV  181 (431)
Q Consensus       108 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~  181 (431)
                      ..+ .++++.++..++|+++.++...+.  ........++|.++..+.++ +.++..+++++.+++....    ......
T Consensus       418 ~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~  495 (861)
T 2bpt_A          418 NLM-NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF  495 (861)
T ss_dssp             HGG-GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred             HHc-CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence            777 677899999999999999875321  12234577899999999876 8999999999998875421    111111


Q ss_pred             HHhCcHHHHHHhcCCCC--cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc--------------cchhhHH
Q 014088          182 IEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ--------------NYKKSIK  245 (431)
Q Consensus       182 ~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--------------~~~~~v~  245 (431)
                      . ..+++.++..+.+.+  +.++..++.+++.++...+......+. .+++.+++.+..              .....++
T Consensus       496 ~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~  573 (861)
T 2bpt_A          496 Y-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ  573 (861)
T ss_dssp             H-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHH
Confidence            1 256778888887543  688999999999998765544333333 355666666542              1145678


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCH-hHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 014088          246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC  324 (431)
Q Consensus       246 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~  324 (431)
                      ..++.++++++............ .+++.++..+...+. .++..++.+++.++.....+...++..  +++.+...++.
T Consensus       574 ~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~  650 (861)
T 2bpt_A          574 SNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQ  650 (861)
T ss_dssp             HHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhcc
Confidence            89999999998743332222222 367788888888776 899999999999986443333344333  78888888887


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCC--HHHHHHHHHHHHH
Q 014088          325 PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN--TEIYEKAVKILET  393 (431)
Q Consensus       325 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~--~~v~~~a~~~l~~  393 (431)
                      +++.++..++.++..+++..+..           +...+.  ..++.+...+.+++  ++++..+..++..
T Consensus       651 ~~~~vr~~a~~~l~~l~~~~~~~-----------~~~~~~--~l~~~l~~~l~~~~~~~~vr~~~~~~l~~  708 (861)
T 2bpt_A          651 VDSPVSITAVGFIADISNSLEED-----------FRRYSD--AMMNVLAQMISNPNARRELKPAVLSVFGD  708 (861)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTGGG-----------GHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhchh-----------ccchHH--HHHHHHHHHhCCccccHhhhHHHHHHHHH
Confidence            88899999999999998765421           222222  22444555544443  6777777655543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.56  E-value=4.7e-14  Score=135.51  Aligned_cols=352  Identities=11%  Similarity=0.111  Sum_probs=238.5

Q ss_pred             HHhhhccC-CChHHHHHHHHHHHHHcCCChHhHHH-----H------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088           21 FFHCFFSC-CFGAVQFEAAWALTNIASGTSENTRV-----V------IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG   88 (431)
Q Consensus        21 lv~~L~~s-~~~~~~~~a~~~L~~l~~~~~~~~~~-----~------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   88 (431)
                      +.+.+.++ .++.+|..|+..|.++..........     .      ....+-..++..|.++++.+ ..+..+++.++.
T Consensus        40 L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~  118 (462)
T 1ibr_B           40 LSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIAC  118 (462)
T ss_dssp             HHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHH
Confidence            44466554 36799999999999987643211110     0      01123456777888877778 888999999875


Q ss_pred             CChHHHHHHHHcCChHHHHHHhcccc--chhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCC--ChHHHHHH
Q 014088           89 DSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN--DDEVLTDA  163 (431)
Q Consensus        89 ~~~~~~~~i~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a  163 (431)
                      ..... .  .-.+.++.++..+ .+.  ++.++..++.+|..++... +.........+++.+...+.+.  ++.+|..+
T Consensus       119 ~~~~~-~--~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a  194 (462)
T 1ibr_B          119 AEIPV-N--QWPELIPQLVANV-TNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAA  194 (462)
T ss_dssp             HHGGG-T--CCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred             Hhccc-c--ccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence            32110 0  1134678888888 555  8899999999999999753 2222233467888999999987  79999999


Q ss_pred             HHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchh
Q 014088          164 CWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK  242 (431)
Q Consensus       164 ~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  242 (431)
                      ++++.++......... .....-+++.+...+.++++.++..+++++..++...+......+...+++.++..+.+. ++
T Consensus       195 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~  273 (462)
T 1ibr_B          195 TNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-ID  273 (462)
T ss_dssp             HHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ch
Confidence            9999987643322111 011112456666777888899999999999999875543322222225677777888777 89


Q ss_pred             hHHHHHHHHHHHhhcCCHH---------------------HHHHHHHhCCHHHHHHHHcc-------CCHhHHHHHHHHH
Q 014088          243 SIKKEACWTISNITAGNVN---------------------QIQAIIEAGIIGPLVNLLLN-------AEFEIKKEAAWAI  294 (431)
Q Consensus       243 ~v~~~a~~~L~nl~~~~~~---------------------~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL  294 (431)
                      .+|..++..+.+++....+                     ...... ..++|.+++.+..       .++.+|..|..+|
T Consensus       274 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L  352 (462)
T 1ibr_B          274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL  352 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHH
Confidence            9999999999988753110                     111111 2356777777743       2467899999999


Q ss_pred             HHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHH
Q 014088          295 SNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN  374 (431)
Q Consensus       295 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  374 (431)
                      ..++...+.....     .+++.+...++++++.++..++.+|..+........          +...+  ...++.+..
T Consensus       353 ~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~----------~~~~l--~~~~~~l~~  415 (462)
T 1ibr_B          353 MLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIE  415 (462)
T ss_dssp             HHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHH
T ss_pred             HHHHHhccHHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHH----------HHHHH--HHHHHHHHH
Confidence            9987654322222     356777888888999999999999999986432110          11112  345778888


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcC
Q 014088          375 LQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       375 l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      ++.++++.||..|.++|.++..
T Consensus       416 ~l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          416 LMKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999988765

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.54  E-value=2.4e-13  Score=141.28  Aligned_cols=368  Identities=14%  Similarity=0.152  Sum_probs=222.1

Q ss_pred             hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCCh-HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088           12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS   90 (431)
Q Consensus        12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   90 (431)
                      +++.++. .+.+.+. ++++.+|..|+++++.++.... +...... ..+++.++..++++++.+|..+++++++++...
T Consensus       363 ~~~~~l~-~l~~~l~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  439 (876)
T 1qgr_A          363 IVPHVLP-FIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (876)
T ss_dssp             GHHHHHH-HHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHH-HHHHHcc-CCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC
Confidence            3443332 4445554 5678999999999999997554 3222222 358999999999999999999999999998643


Q ss_pred             hHH---HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC--------------CCChhhHhhhHHHHHHhhc
Q 014088           91 PKC---RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--------------QPLFEQTRPALPALERLIH  153 (431)
Q Consensus        91 ~~~---~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~--------------~~~~~~~~~~i~~L~~lL~  153 (431)
                      +..   ...+  ...++.++..+ .+ ++.++..++++|.+++....              .........++|.+...+.
T Consensus       440 ~~~~~~~~~l--~~~l~~l~~~l-~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~  515 (876)
T 1qgr_A          440 PEAAINDVYL--APLLQCLIEGL-SA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTD  515 (876)
T ss_dssp             GGGTSSTTTH--HHHHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTT
T ss_pred             chhcccHHHH--HHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHh
Confidence            220   0111  12466777777 34 38899999999999986421              1122234667777777776


Q ss_pred             CC---ChHHHHHHHHHHHHhcc--------------------------------------------------------CC
Q 014088          154 SN---DDEVLTDACWALSYLSD--------------------------------------------------------GT  174 (431)
Q Consensus       154 ~~---~~~v~~~a~~~L~~l~~--------------------------------------------------------~~  174 (431)
                      ..   +..++..++.++..++.                                                        ..
T Consensus       516 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~  595 (876)
T 1qgr_A          516 RPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV  595 (876)
T ss_dssp             SCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            53   23455555555544432                                                        21


Q ss_pred             h-HHHHHHHHhCcHHHHHHhcCCCC--cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHH
Q 014088          175 N-DKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  251 (431)
Q Consensus       175 ~-~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  251 (431)
                      + ....... ..+++.++..+.+..  ..++..++.+++.++..........+. .+++.+...+.+..+..+|..++++
T Consensus       596 ~~~~~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~  673 (876)
T 1qgr_A          596 QHQDALQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGL  673 (876)
T ss_dssp             CHHHHHTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             ChhhhhHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHH
Confidence            1 1111011 134566677776654  468889999999998643322222222 3667788888765368899999999


Q ss_pred             HHHhhcCCHHHHHHHHHhCCHHHHHHHHcc--CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC---
Q 014088          252 ISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD---  326 (431)
Q Consensus       252 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~---  326 (431)
                      ++.++............ .+++.+++.+..  .+.+++..+++++++++...+++...++  ..+++.+.+.++.+.   
T Consensus       674 l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~  750 (876)
T 1qgr_A          674 VGDLCRALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKS  750 (876)
T ss_dssp             HHHHHHHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTT
T ss_pred             HHHHHHHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCC
Confidence            99998632222233332 478888888877  3678999999999999763322222222  124556666665331   


Q ss_pred             -H-------HHHHHHHHHHHHHHHhhhhhhh--cCCCCCcchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 014088          327 -P-------RIVTVCLEGLENILKAGEAEKN--MGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETY  394 (431)
Q Consensus       327 -~-------~v~~~al~~L~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~  394 (431)
                       +       .++..++.++..++........  ..+.....+|...+     ++.+..+..++  +..++..|..+|..+
T Consensus       751 d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l  825 (876)
T 1qgr_A          751 DYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDL  825 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence             2       6777888888888765432100  00000111122211     23344444555  789999998888765


Q ss_pred             cC
Q 014088          395 WV  396 (431)
Q Consensus       395 ~~  396 (431)
                      ..
T Consensus       826 ~~  827 (876)
T 1qgr_A          826 CT  827 (876)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.51  E-value=1.2e-12  Score=136.04  Aligned_cols=312  Identities=13%  Similarity=0.079  Sum_probs=215.2

Q ss_pred             HHHhhhccCC-ChHHHHHHHHHHHHHcCCC-hHhHHHHHh--CCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCChHH
Q 014088           20 FFFHCFFSCC-FGAVQFEAAWALTNIASGT-SENTRVVID--HGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKC   93 (431)
Q Consensus        20 ~lv~~L~~s~-~~~~~~~a~~~L~~l~~~~-~~~~~~~~~--~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~   93 (431)
                      .+++.+.+.+ ++.++..++.++..++... ++.   +..  ..+++.+.+.+.++  +..+|..++.++.+++..-...
T Consensus       132 ~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~---~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~  208 (876)
T 1qgr_A          132 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ---LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (876)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH---HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh---HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3444665432 7899999999999998632 111   111  24667777888776  6899999999999987532211


Q ss_pred             H-HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHh-hhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014088           94 R-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR-PALPALERLIHSNDDEVLTDACWALSYLS  171 (431)
Q Consensus        94 ~-~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  171 (431)
                      . ........++.+...+ .+.+.+++..++.+|..++...+..-..... .+++.+...+.+.++.++..++..+..++
T Consensus       209 ~~~~~~~~~il~~l~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~  287 (876)
T 1qgr_A          209 FDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  287 (876)
T ss_dssp             HTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            0 0011112455566655 6778899999999999999865433333445 78888888888889999999999998887


Q ss_pred             cCCh---------------------HHHHHHHHhCcHHHHHHhcCC-------CCcccHHHHHHHHhHhhcCChhhhHHH
Q 014088          172 DGTN---------------------DKIQAVIEAGVCPRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCI  223 (431)
Q Consensus       172 ~~~~---------------------~~~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~  223 (431)
                      ....                     ....... ..+++.++..+..       +++.+|..+..++..++...+..   +
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~  363 (876)
T 1qgr_A          288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred             HHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence            5321                     0111011 2456667777742       35678999999999987643321   1


Q ss_pred             hhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH-HHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088          224 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  302 (431)
Q Consensus       224 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  302 (431)
                      +. .+++.+...+.++ ++.+|..|++++++++.+.. +....... .+++.++..+.++++.+|..|++++++++....
T Consensus       364 ~~-~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~~-~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          364 VP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVI-QAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             HH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HH-HHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence            11 4566777788777 89999999999999998543 44444333 479999999999999999999999999986532


Q ss_pred             HH--HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088          303 NE--QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       303 ~~--~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  345 (431)
                      +.  ....+  ..+++.+...++.+ +.++..++++|.+++....
T Consensus       441 ~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~  482 (876)
T 1qgr_A          441 EAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             GGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence            11  00111  12567777777764 8899999999999997654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.51  E-value=1.1e-12  Score=111.88  Aligned_cols=188  Identities=20%  Similarity=0.225  Sum_probs=157.9

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 014088           58 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL  137 (431)
Q Consensus        58 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  137 (431)
                      .+.++.|+..|+++++.+|..+++.|+.+..           ...++.|+..+ .++++.++..++++|..+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence            4679999999999999999999999999854           13678899999 67899999999999999863      


Q ss_pred             hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh
Q 014088          138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  217 (431)
Q Consensus       138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  217 (431)
                          ...++.+..+++++++.++..++++|+.+..           .+.++.|+.++.++++.++..++.+|+.+..   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                3678999999999999999999999998853           2467889999999999999999999999843   


Q ss_pred             hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          218 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       218 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                              ...++.|.+++.++ ++.+|..|+++|+.+..  +         ..++.|..++.++++.||..|..+|.++
T Consensus       142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                    14678899999888 99999999999999953  2         2567788889999999999999999998


Q ss_pred             cCCC
Q 014088          298 TSGG  301 (431)
Q Consensus       298 ~~~~  301 (431)
                      ....
T Consensus       202 ~~~~  205 (211)
T 3ltm_A          202 KSFN  205 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.50  E-value=9.8e-13  Score=130.52  Aligned_cols=323  Identities=14%  Similarity=0.093  Sum_probs=224.2

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS   99 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   99 (431)
                      .+.++|. ++++.+|..|+.++.++...+++...     ++++.+..+|.+.++.++..|+++|..++..+++....+. 
T Consensus       146 ~l~~~L~-~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~-  218 (618)
T 1w63_A          146 EVEKLLK-TSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR-  218 (618)
T ss_dssp             HHHHHHH-SCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH-
T ss_pred             HHHHHHc-CCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH-
Confidence            3444554 56789999999999999876655332     6788888899999999999999999999977654322322 


Q ss_pred             cCChHHHHHHhcc--------------ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc------CCChHH
Q 014088          100 NGALMPLLAQFNE--------------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEV  159 (431)
Q Consensus       100 ~~~i~~l~~~l~~--------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~------~~~~~v  159 (431)
                       ..++.+++.|.+              ..++-.+..++.+|..++...+.    ......+.|..++.      +.+..+
T Consensus       219 -~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV  293 (618)
T 1w63_A          219 -KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAI  293 (618)
T ss_dssp             -TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred             -HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHH
Confidence             467888887743              24677888899999999876421    12334455555543      235688


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc
Q 014088          160 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN  239 (431)
Q Consensus       160 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  239 (431)
                      ...+++++..+... +.    +.. .+++.|..++.++++.++..++.+|..++...+..    +. .....++..+.++
T Consensus       294 ~~ea~~~i~~l~~~-~~----l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~  362 (618)
T 1w63_A          294 LYETVLTIMDIKSE-SG----LRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL  362 (618)
T ss_dssp             HHHHHHHHHHSCCC-HH----HHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS
T ss_pred             HHHHHHHHHhcCCC-HH----HHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC
Confidence            99999999987543 21    111 35678888899999999999999999998754322    22 4667889999988


Q ss_pred             chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088          240 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC  319 (431)
Q Consensus       240 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~  319 (431)
                       +..+|..|+.++..++....  ...     +++.+...+...+.++|..++.+|+.++....+....      .++.|+
T Consensus       363 -d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll  428 (618)
T 1w63_A          363 -DVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIM  428 (618)
T ss_dssp             -CHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHH
T ss_pred             -ChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHH
Confidence             99999999999999987421  222     3567888888889999999999999998754222222      367777


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc--CCCHHHHHHHHHHHHHhcC
Q 014088          320 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS--HDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       320 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~~~~~  396 (431)
                      ++++.....+...+...+..++......            +     ...+..|..++.  ...+.+...+.|+|..|-+
T Consensus       429 ~lL~~~~~~v~~~~~~~l~~ii~~~p~l------------~-----~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~  490 (618)
T 1w63_A          429 RVLTTAGSYVRDDAVPNLIQLITNSVEM------------H-----AYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD  490 (618)
T ss_dssp             HHHHHTGGGSCSSHHHHHHHHHHHSCST------------H-----HHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchhHHHHHHHHHHHHhcChhH------------H-----HHHHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence            7777655556666666777777654322            1     112333443332  1334455678999998864

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.50  E-value=3.5e-12  Score=107.88  Aligned_cols=184  Identities=20%  Similarity=0.236  Sum_probs=157.6

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  138 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  138 (431)
                      +..+.++++|+++++.+|..++++|+.+..           ...++.|+..+ .++++.++..++++|..+...      
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~~------   75 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGDE------   75 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCCH------
Confidence            567899999999999999999999998853           13578899999 688999999999999988532      


Q ss_pred             hhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh
Q 014088          139 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  218 (431)
Q Consensus       139 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  218 (431)
                          ..++.+..++.++++.++..++++|+.+..           ...++.+..++.++++.++..++++|+.+..    
T Consensus        76 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           76 ----RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence                578999999999999999999999998753           1467888999999999999999999999853    


Q ss_pred             hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088          219 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  298 (431)
Q Consensus       219 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  298 (431)
                             ...++.|..++.++ ++.+|..|+++|+++..  ++         .++.|..++.++++.+|..|..+|..+-
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~--~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--HH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--hh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   24678899999988 99999999999999942  22         5677888889999999999999999874

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.49  E-value=1.8e-12  Score=109.64  Aligned_cols=186  Identities=20%  Similarity=0.202  Sum_probs=155.8

Q ss_pred             hhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088            9 ECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG   88 (431)
Q Consensus         9 ~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   88 (431)
                      ..+..+.++.      +..++++.+|..|+++|+.+..           ...++.|+++|+++++.+|..++++|+.+..
T Consensus        12 ~~~~~~~~i~------~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~   74 (201)
T 3ltj_A           12 DPEKVEMYIK------NLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD   74 (201)
T ss_dssp             CHHHHHHHHH------HTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred             CCcchHHHHH------HhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence            3456666666      4567889999999999998764           2578999999999999999999999999853


Q ss_pred             CChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 014088           89 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS  168 (431)
Q Consensus        89 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  168 (431)
                      .           ..++.++..+ .++++.++..++++|..+...          ..++.+..++.++++.++..++++|+
T Consensus        75 ~-----------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~  132 (201)
T 3ltj_A           75 E-----------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALG  132 (201)
T ss_dssp             G-----------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             H-----------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            1           3578888888 778999999999999998542          57889999999999999999999999


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHH
Q 014088          169 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA  248 (431)
Q Consensus       169 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  248 (431)
                      .+..           ...++.|..++.++++.++..++.+|+.+..  +         ..++.|.+++.++ ++.+|..|
T Consensus       133 ~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A  189 (201)
T 3ltj_A          133 EIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVA  189 (201)
T ss_dssp             HHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHH
T ss_pred             HhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHH
Confidence            8853           2567889999999999999999999999832  1         3567888889888 89999999


Q ss_pred             HHHHHHhh
Q 014088          249 CWTISNIT  256 (431)
Q Consensus       249 ~~~L~nl~  256 (431)
                      ..+|.++.
T Consensus       190 ~~aL~~l~  197 (201)
T 3ltj_A          190 VNYLETHK  197 (201)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHH
Confidence            99999874

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.47  E-value=2.6e-11  Score=120.30  Aligned_cols=291  Identities=13%  Similarity=0.088  Sum_probs=218.4

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088           60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE  139 (431)
Q Consensus        60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  139 (431)
                      +....++++.+++...++.+...+..++...++....     .++.+.+-| .++++.++..|+++|+++...      .
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL-~~~n~~vr~lAL~~L~~i~~~------~  138 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDL-NHSTQFVQGLALCTLGCMGSS------E  138 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHH-SCSSSHHHHHHHHHHHHHCCH------H
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhc-CCCCHhHHHHHHHHHHhcCCH------H
Confidence            5667778888899999999999999999877653222     467788888 788999999999999999732      3


Q ss_pred             hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh
Q 014088          140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  219 (431)
Q Consensus       140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  219 (431)
                      ....+++.+.+++.+.++.+|+.|+.++.++....++..+     ++++.+..++.+.++.++..|+.++..++..++..
T Consensus       139 ~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~  213 (618)
T 1w63_A          139 MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM  213 (618)
T ss_dssp             HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence            4467889999999999999999999999999877665432     67888888999999999999999999998765432


Q ss_pred             hHHHhhcCChHHHHHHhcc--------------cchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc----
Q 014088          220 TQCIINHQALPCLLDLLTQ--------------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN----  281 (431)
Q Consensus       220 ~~~~~~~~~l~~L~~lL~~--------------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~----  281 (431)
                      ...+ . ..++.++++|.+              ..++..+..++.+++.++..+++...     .+++.|.+++..    
T Consensus       214 ~~~~-~-~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~  286 (618)
T 1w63_A          214 LAHF-R-KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETS  286 (618)
T ss_dssp             HHHH-H-TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCS
T ss_pred             HHHH-H-HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccc
Confidence            2222 2 678888887753              12678888999999999987665332     345555555532    


Q ss_pred             --CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchH
Q 014088          282 --AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLF  359 (431)
Q Consensus       282 --~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~  359 (431)
                        .+..+..+|++++..+..  .+....     .+++.|..++.++++.++..++.+|..+......             
T Consensus       287 ~~~~~aV~~ea~~~i~~l~~--~~~l~~-----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-------------  346 (618)
T 1w63_A          287 KNVGNAILYETVLTIMDIKS--ESGLRV-----LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN-------------  346 (618)
T ss_dssp             STHHHHHHHHHHHHHHHSCC--CHHHHH-----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-------------
T ss_pred             cchHHHHHHHHHHHHHhcCC--CHHHHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-------------
Confidence              245788899999988744  222221     2467888888888899999999999998875432             


Q ss_pred             HHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 014088          360 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  398 (431)
Q Consensus       360 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e  398 (431)
                        .+.  .....+..++.+++..++.+|.+++..+.+.+
T Consensus       347 --~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~  381 (618)
T 1w63_A          347 --AVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGN  381 (618)
T ss_dssp             --HHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred             --HHH--HHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence              121  23456667778888889988888888887654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.46  E-value=3.5e-12  Score=108.82  Aligned_cols=186  Identities=20%  Similarity=0.194  Sum_probs=153.7

Q ss_pred             hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088           11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS   90 (431)
Q Consensus        11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   90 (431)
                      ..++.++.     .| .++++.+|..|++.|+.+..           ...++.|+.+|.++++.++..++++|+.+..  
T Consensus        19 ~~~~~L~~-----~L-~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--   79 (211)
T 3ltm_A           19 EKVEMYIK-----NL-QDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--   79 (211)
T ss_dssp             GGHHHHHH-----HT-TCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--
T ss_pred             hHHHHHHH-----HH-cCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--
Confidence            45566666     55 47789999999999998864           2579999999999999999999999999863  


Q ss_pred             hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088           91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  170 (431)
Q Consensus        91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  170 (431)
                               .+.++.++..+ .++++.++..++++|..+...          ..++.|..+++++++.++..++++|+.+
T Consensus        80 ---------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~  139 (211)
T 3ltm_A           80 ---------ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEI  139 (211)
T ss_dssp             ---------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence                     13578888888 788999999999999998542          5789999999999999999999999988


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH
Q 014088          171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW  250 (431)
Q Consensus       171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~  250 (431)
                      ..           ...++.|..++.++++.++..++.+|+.+..  +         ..++.|.+++.++ ++.+|..|..
T Consensus       140 ~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~  196 (211)
T 3ltm_A          140 GD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVN  196 (211)
T ss_dssp             CC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHH
T ss_pred             CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHH
Confidence            43           1467888999999999999999999999843  1         3567788899888 8999999999


Q ss_pred             HHHHhhcC
Q 014088          251 TISNITAG  258 (431)
Q Consensus       251 ~L~nl~~~  258 (431)
                      +|.++...
T Consensus       197 aL~~~~~~  204 (211)
T 3ltm_A          197 YLETHKSF  204 (211)
T ss_dssp             HHHC----
T ss_pred             HHHhcCCC
Confidence            99998764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.46  E-value=1.4e-13  Score=132.17  Aligned_cols=318  Identities=14%  Similarity=0.113  Sum_probs=216.0

Q ss_pred             hHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCC-hHH
Q 014088           17 VDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDS-PKC   93 (431)
Q Consensus        17 v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-~~~   93 (431)
                      ++..+++.|.+ +++.+ ..++.+++.++.......   .-.++++.|+..+.++  ++.++..++.+|+.++... +..
T Consensus        91 ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~  165 (462)
T 1ibr_B           91 VKNYVLQTLGT-ETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ  165 (462)
T ss_dssp             HHHHHHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHhCC-CCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh
Confidence            44456666654 44577 888889998876321110   0147899999999887  8999999999999998532 211


Q ss_pred             HHHHHHcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcCCC-C-CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088           94 RDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGKP-Q-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  170 (431)
Q Consensus        94 ~~~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~-~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  170 (431)
                      ..... ...++.++..+.... ++.++..|++++.++..... . ........+++.+...+.+.+++++..+++++..+
T Consensus       166 ~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l  244 (462)
T 1ibr_B          166 LQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI  244 (462)
T ss_dssp             TGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             hHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            00111 125667778884432 78999999999999764321 0 01111123577777788888999999999999999


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh---------------------hhHHHhhcCCh
Q 014088          171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---------------------QTQCIINHQAL  229 (431)
Q Consensus       171 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~l  229 (431)
                      +...+......+...+++.++..+.+.++.++..++..+..++.....                     ..+..+ ..++
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  323 (462)
T 1ibr_B          245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV  323 (462)
T ss_dssp             HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhcc
Confidence            866543322122225677777778888889999999999888753200                     000011 2356


Q ss_pred             HHHHHHhccc------chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCH
Q 014088          230 PCLLDLLTQN------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN  303 (431)
Q Consensus       230 ~~L~~lL~~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  303 (431)
                      +.+++.+...      .+..+|..|+.+|..++...++   .++ ..+++.+...+.++++.+|..|+.+++.++....+
T Consensus       324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~  399 (462)
T 1ibr_B          324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP  399 (462)
T ss_dssp             HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH
Confidence            6666666432      1457899999999999873222   122 23677788888888999999999999999986532


Q ss_pred             HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          304 EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       304 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                      +..... -..+++.+...++++++.++..|+++|.++......
T Consensus       400 ~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          400 SQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             TTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence            211111 145788999999999999999999999999876543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.45  E-value=8.6e-12  Score=134.11  Aligned_cols=360  Identities=12%  Similarity=0.104  Sum_probs=237.1

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH-----H
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-----D   95 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-----~   95 (431)
                      +++.|. ++++.+|..|+.+|+.++...++  ..+  ..+++.++..+.++++.+|..++.+|+.++.......     .
T Consensus        53 Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~  127 (1230)
T 1u6g_C           53 ILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA  127 (1230)
T ss_dssp             HHHHTT-CSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred             HHHHhc-CCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchH
Confidence            444665 67889999999999999875443  111  1367888888888888999999999999874332210     0


Q ss_pred             HHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014088           96 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  175 (431)
Q Consensus        96 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  175 (431)
                      .-.....++.++..+..++++.++..++.++..++...+.........+++.+...+.++++.+|..++.+++.++...+
T Consensus       128 ~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~  207 (1230)
T 1u6g_C          128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG  207 (1230)
T ss_dssp             HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence            01122367888888843578899999999999999754332223457788899999999999999999999999987654


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCC-CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHH
Q 014088          176 DKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  254 (431)
Q Consensus       176 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  254 (431)
                      +.   + -..+++.++..+... +..++..++.+++.++...+...... -..+++.+++.+.+. ++.+|..++++++.
T Consensus       208 ~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~  281 (1230)
T 1u6g_C          208 NI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFES  281 (1230)
T ss_dssp             -------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHH
T ss_pred             HH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence            32   2 225677787777543 35788889999999887544322221 236788999999887 89999999999999


Q ss_pred             hhcCCHHHHHHHHHhCCHHHHHHHHc-------------------------------------cCCHhHHHHHHHHHHHh
Q 014088          255 ITAGNVNQIQAIIEAGIIGPLVNLLL-------------------------------------NAEFEIKKEAAWAISNA  297 (431)
Q Consensus       255 l~~~~~~~~~~l~~~~~i~~L~~ll~-------------------------------------~~~~~v~~~a~~aL~~l  297 (431)
                      ++...++.....+. .+++.+++.+.                                     +..+++|..|+.++..+
T Consensus       282 l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l  360 (1230)
T 1u6g_C          282 FVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV  360 (1230)
T ss_dssp             HHHCTTCCCHHHHH-HHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHH
T ss_pred             HHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHH
Confidence            88743221111111 12333333221                                     11356799999999999


Q ss_pred             cCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCC-C------CCc-chHHHHHHhhccH
Q 014088          298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN-T------GGV-NLFAQAIDDAEGL  369 (431)
Q Consensus       298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~------~~~-~~~~~~l~~~~~~  369 (431)
                      +.........+  -..+++.+...+...+..++..++.++..++........... .      .+. ..+...+.  ..+
T Consensus       361 ~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ll  436 (1230)
T 1u6g_C          361 VSTRHEMLPEF--YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP--NIV  436 (1230)
T ss_dssp             HTTCCTTHHHH--HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTT--HHH
T ss_pred             HHhchhHHHHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhh--HHH
Confidence            87543212222  245788888888888899999999999888764321000000 0      000 00111221  134


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          370 EKIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       370 ~~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      +.+...++++++.++..+..++..+..
T Consensus       437 ~~l~~~l~~~~~~vr~~~~~~L~~l~~  463 (1230)
T 1u6g_C          437 KALHKQMKEKSVKTRQCCFNMLTELVN  463 (1230)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            555666788899999888887776654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.41  E-value=3.3e-12  Score=137.35  Aligned_cols=352  Identities=13%  Similarity=0.120  Sum_probs=232.9

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChH-hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL   98 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   98 (431)
                      .+.+.+.+++++.++..|+.++..++..... ....+  ..+++.++..|.++++.+|..++.+++.++...+.   .+ 
T Consensus       137 ~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-  210 (1230)
T 1u6g_C          137 RLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-  210 (1230)
T ss_dssp             HHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-
Confidence            3444665457789999999999998842111 11111  24677888888888999999999999999875543   11 


Q ss_pred             HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH
Q 014088           99 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI  178 (431)
Q Consensus        99 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  178 (431)
                      -...++.++..+....+...+..++.++..++...+..-......++|.+...+.+.++++|..++.++..++...+...
T Consensus       211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~  290 (1230)
T 1u6g_C          211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV  290 (1230)
T ss_dssp             CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence            22357788888855444567788899999988764332223446899999999999999999999999998886543321


Q ss_pred             HHHHHhCcHHHHHHhcCC-------------------------------------CCcccHHHHHHHHhHhhcCChhhhH
Q 014088          179 QAVIEAGVCPRLVELLRH-------------------------------------PSPSVLIPALRTVGNIVTGDDMQTQ  221 (431)
Q Consensus       179 ~~~~~~~~i~~L~~ll~~-------------------------------------~~~~v~~~a~~~l~~l~~~~~~~~~  221 (431)
                      .... ..+++.++..+..                                     ..+.+|..++.++..++...+....
T Consensus       291 ~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~  369 (1230)
T 1u6g_C          291 YPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP  369 (1230)
T ss_dssp             HHHH-HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH
Confidence            1111 1344444444421                                     1234688899999998875443333


Q ss_pred             HHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC--C-----------------HHHHHHHHHhCCHHHHHHHHccC
Q 014088          222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--N-----------------VNQIQAIIEAGIIGPLVNLLLNA  282 (431)
Q Consensus       222 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~-----------------~~~~~~l~~~~~i~~L~~ll~~~  282 (431)
                      ..+ ..+++.+...+.+. +..+|..++.++..+...  .                 .......+ ..+++.+.+.+.++
T Consensus       370 ~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~  446 (1230)
T 1u6g_C          370 EFY-KTVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEK  446 (1230)
T ss_dssp             HHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCS
T ss_pred             HHH-HHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccC
Confidence            344 36788888888777 899999999988877641  0                 11112222 23566677778888


Q ss_pred             CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHH
Q 014088          283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA  360 (431)
Q Consensus       283 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~  360 (431)
                      ++.+|..++.+++.++.........++  ..+++.+...++.++  ..++..++..+..++.......          +.
T Consensus       447 ~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~----------~~  514 (1230)
T 1u6g_C          447 SVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV----------FH  514 (1230)
T ss_dssp             CHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG----------GH
T ss_pred             CHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH----------HH
Confidence            999999999999988764321111111  235777888887665  4888888988888876432211          23


Q ss_pred             HHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088          361 QAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       361 ~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  395 (431)
                      ..+.  ..++.+.....+++..++..|..++..+.
T Consensus       515 ~~l~--~llp~L~~~l~d~~~~v~~~al~~l~~l~  547 (1230)
T 1u6g_C          515 PHVQ--ALVPPVVACVGDPFYKITSEALLVTQQLV  547 (1230)
T ss_dssp             HHHT--TTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hHHH--HHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            3332  34666777777888888777766666544

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.27  E-value=8.4e-10  Score=86.81  Aligned_cols=217  Identities=14%  Similarity=0.193  Sum_probs=177.4

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 014088           57 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP  136 (431)
Q Consensus        57 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  136 (431)
                      +..++..++.+|.+.-+.++..|+..+.+++...++.....     +..|+.++..+...+.......+++.++.-.|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            44678899999999999999999999999998888754443     45677777778888888888899999987542  


Q ss_pred             ChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC
Q 014088          137 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  216 (431)
Q Consensus       137 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  216 (431)
                        ....+.+|.+..-.+-++++++.+..++|..+...+|....     +++..+..++.+++..-+..++..++.+....
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence              45578899999888889999999999999999988876544     56678889999888778888999988887655


Q ss_pred             hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHH
Q 014088          217 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN  296 (431)
Q Consensus       217 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  296 (431)
                      ..+..     ..+|.|..+|.+. +.-+|..|..+|.+++..++..+..+.      .-++-+.+.+..++..+..+|+.
T Consensus       176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence            44432     7899999999999 999999999999999998888554332      34556677888899888888888


Q ss_pred             hcC
Q 014088          297 ATS  299 (431)
Q Consensus       297 l~~  299 (431)
                      ++.
T Consensus       244 l~l  246 (253)
T 2db0_A          244 LLL  246 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.25  E-value=4.1e-09  Score=104.26  Aligned_cols=292  Identities=14%  Similarity=0.107  Sum_probs=201.3

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  104 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  104 (431)
                      +..+++...+..+...+..++..+++....     ++..+.+=|+++++.++..|+++|+++..  ++...     ..++
T Consensus        82 l~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~  149 (621)
T 2vgl_A           82 LLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAG  149 (621)
T ss_dssp             GGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTT
T ss_pred             HhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHH
Confidence            345677899999999999998866654322     35677778889999999999999999964  33222     2456


Q ss_pred             HHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014088          105 PLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  183 (431)
Q Consensus       105 ~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  183 (431)
                      .+.+.+. .+.++.+|+.|+.++.++.+..|...  ...++++.+.++|.+.++.++..|+.++..++...+.....+..
T Consensus       150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~--~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~  227 (621)
T 2vgl_A          150 EIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV--PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS  227 (621)
T ss_dssp             HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC--CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc--CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            6777763 46789999999999999998643221  11478999999999999999999999999998766543221111


Q ss_pred             hCcHHHHHHhcCCC-------------CcccHHHHHHHHhHhhcCC-hhhhHHHhhcCChHHHHHHh---------ccc-
Q 014088          184 AGVCPRLVELLRHP-------------SPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLL---------TQN-  239 (431)
Q Consensus       184 ~~~i~~L~~ll~~~-------------~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL---------~~~-  239 (431)
                       .++..|.+++..+             ++-.+...++.++.++... +.....+.+  .+..+++.+         ++. 
T Consensus       228 -~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n  304 (621)
T 2vgl_A          228 -LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSN  304 (621)
T ss_dssp             -HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHH
T ss_pred             -HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccc
Confidence             2233333443221             3446777888888887643 333332222  333344332         222 


Q ss_pred             chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088          240 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC  319 (431)
Q Consensus       240 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~  319 (431)
                      ....+..+++.++..+.. +++....     ++..|..++.++++.+|..|+.+|..++.....  ... + ......++
T Consensus       305 ~~~aVl~ea~~~i~~l~~-~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~-~-~~~~~~i~  374 (621)
T 2vgl_A          305 AKNAVLFEAISLIIHHDS-EPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEA-V-KTHIETVI  374 (621)
T ss_dssp             HHHHHHHHHHHHHHHHCC-CHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHH-H-HTTHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCC-cHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHH-H-HHHHHHHH
Confidence            023888899999988863 3443332     456788888888999999999999999876531  112 2 23577788


Q ss_pred             hhcC-CCCHHHHHHHHHHHHHHHHh
Q 014088          320 DLLN-CPDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       320 ~ll~-~~~~~v~~~al~~L~~l~~~  343 (431)
                      .+++ ++|..++..++.+|..++..
T Consensus       375 ~~L~~d~d~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          375 NALKTERDVSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred             HHhccCCCHhHHHHHHHHHHHHcCh
Confidence            8888 88999999999999988744

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.18  E-value=5.1e-09  Score=103.56  Aligned_cols=299  Identities=13%  Similarity=0.111  Sum_probs=211.9

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  138 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  138 (431)
                      .+....++++.+++...++.+...+..++...++..  +.   .++.+.+-+ .++++.++..|+.+++++..      .
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~--~L---~iN~l~kDl-~~~n~~ir~lALr~L~~i~~------~  141 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI--RL---INNAIKNDL-ASRNPTFMGLALHCIANVGS------R  141 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH--HH---HHHHHHHHH-HSCCHHHHHHHHHHHHHHCC------H
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH--HH---HHHHHHHhc-CCCCHHHHHHHHHHhhccCC------H
Confidence            467888889999999999999999999998877532  22   356777777 68899999999999999954      2


Q ss_pred             hhHhhhHHHHHHhh--cCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC
Q 014088          139 EQTRPALPALERLI--HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  216 (431)
Q Consensus       139 ~~~~~~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  216 (431)
                      .....++|.+.+++  .+.++.||+.|+.++..+....++...   ..++++.+..+|.+.++.++..|+.++..++..+
T Consensus       142 e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          142 EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence            35567889999999  889999999999999999876654322   2478999999999999999999999999998765


Q ss_pred             hhhhHHHhhcCChHHHHHHhccc-c-----------hhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHc---
Q 014088          217 DMQTQCIINHQALPCLLDLLTQN-Y-----------KKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLL---  280 (431)
Q Consensus       217 ~~~~~~~~~~~~l~~L~~lL~~~-~-----------~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~---  280 (431)
                      +......+. ..+..|.+++... .           ++-.+...+..++.++.. +++....+.+  +++.++..+.   
T Consensus       219 ~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~  295 (621)
T 2vgl_A          219 PEEFKTSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP  295 (621)
T ss_dssp             HHHHTTHHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred             hHHHHHHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence            532211111 1233333443221 1           467888888888888863 4555554444  3444444331   


Q ss_pred             ------cC--CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 014088          281 ------NA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN  352 (431)
Q Consensus       281 ------~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  352 (431)
                            +.  ...|..+|+.++..+..  .++....     ++..|..++.+.++.++..++..|..++.....      
T Consensus       296 ks~~l~~~n~~~aVl~ea~~~i~~l~~--~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~------  362 (621)
T 2vgl_A          296 KSKKVQHSNAKNAVLFEAISLIIHHDS--EPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFS------  362 (621)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT------
T ss_pred             ccccccccchHHHHHHHHHHHHHhcCC--cHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc------
Confidence                  11  23788889999998853  3343332     577888899889999999999999999765321      


Q ss_pred             CCCcchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHHHhcCC
Q 014088          353 TGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       353 ~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~  397 (431)
                             ...+..  ....+...+. +++..++.+|.+++..+.++
T Consensus       363 -------~~~~~~--~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          363 -------HEAVKT--HIETVINALKTERDVSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             -------HHHHHT--THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred             -------HHHHHH--HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence                   111221  2344555455 78888888888888776643

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.09  E-value=8.1e-09  Score=84.95  Aligned_cols=226  Identities=17%  Similarity=0.173  Sum_probs=171.5

Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhH
Q 014088          142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  221 (431)
Q Consensus       142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~  221 (431)
                      ...+..+.+++.+.|+.++.+++.+|..+....+.......-..+++.++.++.+.+..+...|++++..+..+.+-...
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45778899999999999999999999999877555444444447899999999999999999999999999987653333


Q ss_pred             HHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088          222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       222 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      .+.  .+...+..++.++ ++-++.+|+..++-+-..++.       .+++..+.+++.+.+.+++..++.++.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            232  3567889999977 999999999999998443221       125667888888889999999999999998754


Q ss_pred             CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCC
Q 014088          302 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDN  380 (431)
Q Consensus       302 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~  380 (431)
                      ....    .-.+++.-+-++++++|+.+++.|+.++..++...-..+         ..-...   +.......+. ....
T Consensus       182 ~D~~----i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~---------~~~~~~---~~~~~v~~l~~~~~~  245 (265)
T 3b2a_A          182 ADSG----HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLEN---------VKIELL---KISRIVDGLVYREGA  245 (265)
T ss_dssp             SSCC----CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSC---------CHHHHH---HHHHHHHHGGGCSSC
T ss_pred             CCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHh---------HHHHHH---HHHHHHHHHHHhcCC
Confidence            2100    123467778889999999999999999999987743321         112221   2344456666 6788


Q ss_pred             HHHHHHHHHHHHH
Q 014088          381 TEIYEKAVKILET  393 (431)
Q Consensus       381 ~~v~~~a~~~l~~  393 (431)
                      |.++.+|..+-+.
T Consensus       246 ~~~~~ka~~v~~~  258 (265)
T 3b2a_A          246 PIIRLKAKKVSDL  258 (265)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH
Confidence            9999999776554

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.06  E-value=5.5e-08  Score=76.64  Aligned_cols=220  Identities=13%  Similarity=0.196  Sum_probs=171.1

Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCcccHHHHHHHHhHhhcCChhhh
Q 014088          142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQT  220 (431)
Q Consensus       142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~  220 (431)
                      ..++..++.+|.+.-..++++|+..+..++...++....+     +..|+-+++ +..-.......++++.++...+...
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v  105 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV  105 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence            5788899999999889999999999999999888766633     355556654 3445566788999999998777655


Q ss_pred             HHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCC
Q 014088          221 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  300 (431)
Q Consensus       221 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  300 (431)
                      .     +.+|.+..-..-. ++++|....++|..++..+|....-     ++..+..++.+++..=|..|+.+++.+..+
T Consensus       106 ~-----~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          106 K-----SMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             H-----HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred             H-----hhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence            5     5678888888888 9999999999999999988886654     455789999999988888899999888776


Q ss_pred             CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCC
Q 014088          301 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN  380 (431)
Q Consensus       301 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~  380 (431)
                      +    .+++  .-.++.|..++..++.-++..+.++|.++.....+.            +..+.     +++.+ +++.+
T Consensus       175 ~----~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl------------Rkii~-----~kl~e-~~D~S  230 (253)
T 2db0_A          175 S----FKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL------------RKVVI-----KRLEE-LNDTS  230 (253)
T ss_dssp             T----HHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH------------HHHHH-----HHHHH-CCCSC
T ss_pred             C----cccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH------------HHHHH-----HHHHH-hcCcH
Confidence            5    2322  336999999999999999999999999999877653            33332     33444 57788


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q 014088          381 TEIYEKAVKILETYWVEEDED  401 (431)
Q Consensus       381 ~~v~~~a~~~l~~~~~~e~~~  401 (431)
                      ..+.......|.++.--|.++
T Consensus       231 ~lv~~~V~egL~rl~l~e~~~  251 (253)
T 2db0_A          231 SLVNKTVKEGISRLLLLEGHS  251 (253)
T ss_dssp             HHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            899988888888776555443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.03  E-value=8.7e-09  Score=103.26  Aligned_cols=208  Identities=15%  Similarity=0.094  Sum_probs=148.3

Q ss_pred             hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHcC
Q 014088           24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNG  101 (431)
Q Consensus        24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~  101 (431)
                      .|. |+++..|..|+++|.+++. +++.+..+...|+|..++ .+|.+++.++|..|+++|.||+.+ .++....+...|
T Consensus        42 ~L~-S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~  119 (684)
T 4gmo_A           42 DLK-SPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLD  119 (684)
T ss_dssp             HHS-SSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred             HcC-CCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcC
Confidence            354 6778999999999999997 788888999999888765 578889999999999999999954 467788899999


Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  181 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  181 (431)
                      ++++|..++.+.         ...+....... ..........+           .++...++.+|.+++.........+
T Consensus       120 il~~L~~~l~~~---------~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~l~lL~~L~e~s~~~~~~v  178 (684)
T 4gmo_A          120 VLTAIEHAAKAV---------LETLTTSEPPF-SKLLKAQQRLV-----------WDITGSLLVLIGLLALARDEIHEAV  178 (684)
T ss_dssp             HHHHHHHHHHHH---------HHHHHCBTTBG-GGSCHHHHHHH-----------HHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             hHHHHHHHHHhh---------HHHHhhhcccc-ccccHHHHHHH-----------HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            999999998321         11111111110 00000001111           1244566777888887777766777


Q ss_pred             HHhCcHHHHHHhcCC---CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHH---HHHHhcccchhhHHHHHHHHHHHh
Q 014088          182 IEAGVCPRLVELLRH---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC---LLDLLTQNYKKSIKKEACWTISNI  255 (431)
Q Consensus       182 ~~~~~i~~L~~ll~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~---L~~lL~~~~~~~v~~~a~~~L~nl  255 (431)
                      ...+.++.++..|.+   ...+++..++.+|..++..++...+.+.+.+....   +..+. .. ....+..+++++.|+
T Consensus       179 ~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~-~~~~~~la~giL~Ni  256 (684)
T 4gmo_A          179 ATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TG-TDPRAVMACGVLHNV  256 (684)
T ss_dssp             HTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HS-SCTTHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cC-CcHHHHHHHHHHHhH
Confidence            788889999888743   23578999999999999999888887777654333   33332 33 345678888999987


Q ss_pred             h
Q 014088          256 T  256 (431)
Q Consensus       256 ~  256 (431)
                      .
T Consensus       257 ~  257 (684)
T 4gmo_A          257 F  257 (684)
T ss_dssp             H
T ss_pred             h
Confidence            4

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.99  E-value=2.9e-09  Score=106.76  Aligned_cols=196  Identities=14%  Similarity=0.092  Sum_probs=149.3

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHH-HHHhhcCCChHHHHHHHHHHHHhccC-ChHHHH
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA-LERLIHSNDDEVLTDACWALSYLSDG-TNDKIQ  179 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~-L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~  179 (431)
                      .+.++++.| ++++++.|..|+++|++++.+..........++++. +..+|.+++.+++..|+++|.||+.. ..+...
T Consensus        35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            466788888 788999999999999999976444444455666655 56678999999999999999999865 455667


Q ss_pred             HHHHhCcHHHHHHhcCCC-------C--------------cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc
Q 014088          180 AVIEAGVCPRLVELLRHP-------S--------------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ  238 (431)
Q Consensus       180 ~~~~~~~i~~L~~ll~~~-------~--------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  238 (431)
                      .+...|+++.|..++...       .              ..+...++.+|++++..++.....+...+.++.|+..|.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            788889999998887421       0              1244567889999998888777778888999999999854


Q ss_pred             c--chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHH--HHHHHccCCHhHHHHHHHHHHHhc
Q 014088          239 N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP--LVNLLLNAEFEIKKEAAWAISNAT  298 (431)
Q Consensus       239 ~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~--L~~ll~~~~~~v~~~a~~aL~~l~  298 (431)
                      .  ...+++..|+.+|.+++..+++..+.+.+.+....  ++..+...+...+..+++.|.|+.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence            3  13679999999999999999999988888665322  222223344456778888888874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.97  E-value=5.5e-09  Score=94.48  Aligned_cols=277  Identities=14%  Similarity=0.089  Sum_probs=166.2

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 014088           60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE  139 (431)
Q Consensus        60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  139 (431)
                      +...+++++++++..+++-+...+.+++...++   .++   ++..+.+-+ +++++-++..|+++|+++...      .
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~------~  135 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VII---VTSSLTKDM-TGKEDSYRGPAVRALCQITDS------T  135 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GGG---GHHHHHHHH-HSSCHHHHHHHHHHHHHHCCT------T
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HHH---HHHHHHhhc-CCCcHhHHHHHHHHHhcCCCH------H
Confidence            456778899999999999999999888876433   222   467777778 778999999999999999765      2


Q ss_pred             hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhh
Q 014088          140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  219 (431)
Q Consensus       140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  219 (431)
                      ....+.+.+.+.+.+.++-|++.|+.+...+....++..+     ++++.+.+++.+.++.+...|+.++..+...+...
T Consensus       136 m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a  210 (355)
T 3tjz_B          136 MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA  210 (355)
T ss_dssp             THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH
Confidence            4567888899999999999999999999999988876543     78999999999999999999999999987654321


Q ss_pred             hHHHhhcCChHHHHHHhccc--chhhHHHHHHHHHHHhhcCC-HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHH
Q 014088          220 TQCIINHQALPCLLDLLTQN--YKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN  296 (431)
Q Consensus       220 ~~~~~~~~~l~~L~~lL~~~--~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  296 (431)
                               +..++..+...  .++-.+...+..++.++..+ ++.     ...+++.+..++++.++.|..+|+.++..
T Consensus       211 ---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~~  276 (355)
T 3tjz_B          211 ---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIVN  276 (355)
T ss_dssp             ---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC
T ss_pred             ---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence                     23334433332  02333444444444444433 221     23456677777888899999999999999


Q ss_pred             hcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh
Q 014088          297 ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ  376 (431)
Q Consensus       297 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~  376 (431)
                      +..... ..     -..++..|..+++++++.++-.|+..|..+......               .+.+  .-..|+.+.
T Consensus       277 l~~~~~-~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~---------------~v~~--~n~~ie~li  333 (355)
T 3tjz_B          277 LPGCSA-KE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS---------------AVTA--CNLDLENLV  333 (355)
T ss_dssp             -----------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred             ccCCCH-HH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH---------------HHHH--HHHHHHHHc
Confidence            855221 11     123577788888889999999999999988875432               2222  234478888


Q ss_pred             cCCCHHHHHHHHHHH
Q 014088          377 SHDNTEIYEKAVKIL  391 (431)
Q Consensus       377 ~~~~~~v~~~a~~~l  391 (431)
                      +++|..+...|...|
T Consensus       334 ~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          334 TDANRSIATLAITTL  348 (355)
T ss_dssp             ---------------
T ss_pred             cCCcHhHHHHHHHHh
Confidence            999998888876544

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.97  E-value=5.5e-09  Score=90.86  Aligned_cols=187  Identities=14%  Similarity=0.219  Sum_probs=144.1

Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088          104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI  182 (431)
Q Consensus       104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  182 (431)
                      +.+.+.+ ++.++..|..++..|..+....+.........+++.+...+. +.+..++..++.+++.++..-........
T Consensus        18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3466777 788999999999999999886322211223578889999995 89999999999999999865333323222


Q ss_pred             HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-CCHH
Q 014088          183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVN  261 (431)
Q Consensus       183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~  261 (431)
                       ..+++.++..+.+.+..++..+..++..++....  ..     .+++.+...+++. ++.+|..++..|+.+.. ..++
T Consensus        97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence             2578999999999999999999999999987543  11     3578889999988 89999999999999654 3333


Q ss_pred             H-HHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088          262 Q-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       262 ~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      . ....+. .++|.+..++.+.++++|..|..+++.++..-
T Consensus       168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            1 122223 47899999999999999999999999997543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.94  E-value=2.4e-07  Score=85.60  Aligned_cols=323  Identities=13%  Similarity=0.125  Sum_probs=197.0

Q ss_pred             hCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCh---HHHHHHHHcCCh-HHHHHHhccccchhHHHHHHHHHHHhhc
Q 014088           57 DHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP---KCRDLVLSNGAL-MPLLAQFNEHAKLSMLRNATWTLSNFCR  131 (431)
Q Consensus        57 ~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~---~~~~~i~~~~~i-~~l~~~l~~~~~~~~~~~a~~~L~~l~~  131 (431)
                      +..++..++.+|+. ...++.+..+..+.-+...++   .....+.+.... ..+........++-....++.++..++.
T Consensus        75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~  154 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  154 (480)
T ss_dssp             SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            34677889998876 778999999999998887665   332333332222 2233333233344445566666666664


Q ss_pred             CCCCCChhhHhhhHH--HHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhcC----CC-----
Q 014088          132 GKPQPLFEQTRPALP--ALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLR----HP-----  197 (431)
Q Consensus       132 ~~~~~~~~~~~~~i~--~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~----~~-----  197 (431)
                      ..+. .......++.  .++..|.. ++...+.-++.++..+...+.- ...+.+.  ..++.++.+++    +.     
T Consensus       155 ~~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~-R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          155 NGLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY-RDVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TTTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH-HHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             cCCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH-HHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            4322 2333344444  45555654 2445566788888887776543 3334432  23555544322    11     


Q ss_pred             --------CcccHHHHHHHHhHhhcCChhhhHHHhhcCCh--HHHHHHhcccchhhHHHHHHHHHHHhhcCCH----HHH
Q 014088          198 --------SPSVLIPALRTVGNIVTGDDMQTQCIINHQAL--PCLLDLLTQNYKKSIKKEACWTISNITAGNV----NQI  263 (431)
Q Consensus       198 --------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~  263 (431)
                              ...+...++.+++-++...+ ....+...++.  +.|+.+++....+++.+-++.++.|+....+    ...
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~  311 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  311 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence                    23457889999999988654 44445444433  5677778776678999999999999998542    223


Q ss_pred             H-HHHHhCCHHHHHHHHccC---CHhHHHHHHHHHHHh---------------------cCCC----CH----HHHHHHH
Q 014088          264 Q-AIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNA---------------------TSGG----SN----EQIKFLV  310 (431)
Q Consensus       264 ~-~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l---------------------~~~~----~~----~~~~~l~  310 (431)
                      . .++..++ +.+++.|...   |+++....-.....+                     ...+    ++    ++...|.
T Consensus       312 ~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~  390 (480)
T 1ho8_A          312 KQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK  390 (480)
T ss_dssp             HHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence            3 2333444 4566666543   555543222211111                     1111    11    1122222


Q ss_pred             HC--CChHHHHhhcCC----------CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC
Q 014088          311 SQ--GCIKPLCDLLNC----------PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH  378 (431)
Q Consensus       311 ~~--~~l~~L~~ll~~----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~  378 (431)
                      +.  .++..|.+++++          .|+.+...|+.=|+.+++..+.            .+..+.+.|+.+++.+|++|
T Consensus       391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~------------gr~i~~~lg~K~~VM~Lm~h  458 (480)
T 1ho8_A          391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE------------SIDVLDKTGGKADIMELLNH  458 (480)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT------------HHHHHHHHSHHHHHHHHTSC
T ss_pred             hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc------------hhHHHHHcCcHHHHHHHhcC
Confidence            22  237788888863          3677888888899999987654            37788899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 014088          379 DNTEIYEKAVKILETYW  395 (431)
Q Consensus       379 ~~~~v~~~a~~~l~~~~  395 (431)
                      +|++|+..|..+++.+.
T Consensus       459 ~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          459 SDSRVKYEALKATQAII  475 (480)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999888764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.92  E-value=1.5e-07  Score=94.55  Aligned_cols=225  Identities=16%  Similarity=0.175  Sum_probs=161.3

Q ss_pred             hHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHh
Q 014088           31 GAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  110 (431)
Q Consensus        31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l  110 (431)
                      +.++..|+..|+.+..++...       .+++.|.+.+.+.+..++..++.+|+.+-...... +      ++..++..+
T Consensus       451 ~~ir~gAaLGLGla~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~  516 (963)
T 4ady_A          451 DVLLHGASLGIGLAAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYS  516 (963)
T ss_dssp             HHHHHHHHHHHHHHSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHH
Confidence            678999999999876543211       25677888888777777888889999874332211 1      355666666


Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHh--ccCChHHHHHHHHhCcH
Q 014088          111 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYL--SDGTNDKIQAVIEAGVC  187 (431)
Q Consensus       111 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l--~~~~~~~~~~~~~~~~i  187 (431)
                      ..+.+..+++.++..|+.+..+.        ...++.+++.|. +.++-+|..++.+++--  ..++...         +
T Consensus       517 ~e~~~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------I  579 (963)
T 4ady_A          517 QETQHGNITRGLAVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------V  579 (963)
T ss_dssp             HHCSCHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------H
T ss_pred             hccCcHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------H
Confidence            56678899999999999886653        245666766665 56888888888877643  3333322         3


Q ss_pred             HHHHHhc-CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHH
Q 014088          188 PRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  266 (431)
Q Consensus       188 ~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  266 (431)
                      +.|+..+ .+.+..+|+.|+..|+.+..+++         ..++.++.+|.+..++.+|..|+++++.++.+++..    
T Consensus       580 q~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~----  646 (963)
T 4ady_A          580 KRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ----  646 (963)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH----
T ss_pred             HHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH----
Confidence            4344433 45667899999999999877654         345667776655559999999999999999865431    


Q ss_pred             HHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088          267 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  302 (431)
Q Consensus       267 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  302 (431)
                         .++..|..+.++.+..|+..|+.+|+.+....+
T Consensus       647 ---~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          647 ---SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             ---HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence               145678888889999999999999999987543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.88  E-value=2.3e-08  Score=90.46  Aligned_cols=270  Identities=11%  Similarity=0.092  Sum_probs=154.4

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  104 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  104 (431)
                      +..+++..++.-....+.+++...++.   +   =++..+.+=++++++-+|-.|+++|+++....  ..+.     ..+
T Consensus        76 l~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~  142 (355)
T 3tjz_B           76 LFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA-----IER  142 (355)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHH
T ss_pred             HhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHH
Confidence            445778899999888888888753332   2   25788888889999999999999999997543  1122     244


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh
Q 014088          105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA  184 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  184 (431)
                      .+-+.+ .+.++-+++.|+.+..++....|.    ...++++.+.+++.+.++-++.+|+.++..+..++...       
T Consensus       143 ~lk~~L-~d~~pyVRk~A~l~~~kL~~~~pe----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a-------  210 (355)
T 3tjz_B          143 YMKQAI-VDKVPSVSSSALVSSLHLLKCSFD----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA-------  210 (355)
T ss_dssp             HHHHHH-TCSSHHHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH-------
T ss_pred             HHHHHc-CCCCHHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH-------
Confidence            566666 788999999999999999876432    34578999999999999999999999999998765422       


Q ss_pred             CcHHHHHHhcCCC---CcccHHHHHHHHhHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH
Q 014088          185 GVCPRLVELLRHP---SPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  260 (431)
Q Consensus       185 ~~i~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  260 (431)
                        +..++..+...   ++-.....++.+..++..+ +.     .....++.+..+|++. ++.|..+|++++..+...+.
T Consensus       211 --~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~  282 (355)
T 3tjz_B          211 --VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSA  282 (355)
T ss_dssp             --HHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCS-SHHHHHHHHHHHTC------
T ss_pred             --HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCH
Confidence              22333333322   2333344455555555443 22     2236778888889988 99999999999998855222


Q ss_pred             HHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088          261 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  338 (431)
Q Consensus       261 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~  338 (431)
                      .    .. ..++..+..++.++++.+|..|++.|..+..... ....     ..-..+.++++++|..+...|+..|.
T Consensus       283 ~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-~~v~-----~~n~~ie~li~d~n~sI~t~Aittll  349 (355)
T 3tjz_B          283 K----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-SAVT-----ACNLDLENLVTDANRSIATLAITTLL  349 (355)
T ss_dssp             ----------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------------
T ss_pred             H----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-HHHH-----HHHHHHHHHccCCcHhHHHHHHHHhh
Confidence            2    11 2345667778888999999999999999987542 2221     14556677888888888877666554

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.87  E-value=3.4e-09  Score=92.22  Aligned_cols=185  Identities=14%  Similarity=0.186  Sum_probs=140.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHH-HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh
Q 014088           62 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ  140 (431)
Q Consensus        62 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  140 (431)
                      +.+.+.+++.++..|..++..|..+....+... ...  ...++.+...+..+.+..++..|+.++..++..-...-...
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            457778889999999999999999875421110 000  11355666667337889999999999999997542222334


Q ss_pred             HhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC-hh-
Q 014088          141 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DM-  218 (431)
Q Consensus       141 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~-  218 (431)
                      ...++|.++..+.++++.+|..+..++..+....+  ..     .+++.+...+.+.++.++..++..++.+.... +. 
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            57799999999999999999999999999987653  12     36788889999999999999999999975543 22 


Q ss_pred             hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088          219 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  257 (431)
Q Consensus       219 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  257 (431)
                      .....+. .+++.+.+.+.++ +.++|..|..+++.++.
T Consensus       169 ~~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          169 LNKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CCHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            1222333 6789999999988 99999999999999886

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.84  E-value=1e-06  Score=88.69  Aligned_cols=261  Identities=14%  Similarity=0.133  Sum_probs=181.7

Q ss_pred             CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088           28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--------DDVREQAVWALGNVAGDSPKCRDLVLS   99 (431)
Q Consensus        28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--------~~v~~~a~~~L~~l~~~~~~~~~~i~~   99 (431)
                      ++++.++..|+.+|+.+..+...        .++..|...|.+.+        +.++..|+..|+.+...+..  ..   
T Consensus       406 s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--ee---  472 (963)
T 4ady_A          406 ASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--IE---  472 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--HH---
T ss_pred             CCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--HH---
Confidence            56689999999999999875432        14677777776544        77898999999998644321  11   


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhccCChHHH
Q 014088          100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKI  178 (431)
Q Consensus       100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~  178 (431)
                        +++.|...+ .+.+..++..|+.+|+.+-.+...      ...+..|+..+ .+.+..+++.++.+|+.+....+.. 
T Consensus       473 --v~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~-  542 (963)
T 4ady_A          473 --VYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL-  542 (963)
T ss_dssp             --HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG-
T ss_pred             --HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH-
Confidence              356677777 444556677888888877554321      12344444443 3557889999999999887776543 


Q ss_pred             HHHHHhCcHHHHHHhcC-CCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088          179 QAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  257 (431)
Q Consensus       179 ~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  257 (431)
                              ++.+++.|. ..++.+|..++.+++.-..+....       ..++.|+..+.+..++.+|..|+.+|+.+..
T Consensus       543 --------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~  607 (963)
T 4ady_A          543 --------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLL  607 (963)
T ss_dssp             --------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred             --------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhcc
Confidence                    345555554 467778888888777555444322       2355566665544478999999999999887


Q ss_pred             CCHHHHHHHHHhCCHHHHHHHH-ccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHH
Q 014088          258 GNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG  336 (431)
Q Consensus       258 ~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~  336 (431)
                      ++++         .++.+++.+ ++.++.+|..|..+|+.+......        ..+++.|..+.+..+..++..|+.+
T Consensus       608 g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--------~~aid~L~~L~~D~d~~Vrq~Ai~A  670 (963)
T 4ady_A          608 RDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--------QSAIDVLDPLTKDPVDFVRQAAMIA  670 (963)
T ss_dssp             SSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--------HHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             CCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--------HHHHHHHHHHccCCCHHHHHHHHHH
Confidence            6542         466677655 456999999999999999765431        1146677788889999999999999


Q ss_pred             HHHHHHh
Q 014088          337 LENILKA  343 (431)
Q Consensus       337 L~~l~~~  343 (431)
                      |..+...
T Consensus       671 LG~Ig~g  677 (963)
T 4ady_A          671 LSMILIQ  677 (963)
T ss_dssp             HHHHSTT
T ss_pred             HHHHhcC
Confidence            9988654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.84  E-value=4.9e-08  Score=80.40  Aligned_cols=187  Identities=17%  Similarity=0.171  Sum_probs=147.3

Q ss_pred             CcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC---CHH
Q 014088          185 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVN  261 (431)
Q Consensus       185 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~  261 (431)
                      +.+..+..++...++.++.+++.++..+....+.......-..+++.+++++.+. ++.+...|+.++..+..+   +++
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHH
Confidence            4678889999999999999999999999876544444444447899999999999 999999999999999985   334


Q ss_pred             HHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088          262 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  341 (431)
Q Consensus       262 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~  341 (431)
                      ....     +...+.+++.+++.-++.+|+..++.+--...        ..+++..+.+++++++++++..++.++.++.
T Consensus       112 ~y~K-----l~~aL~dlik~~~~il~~eaae~Lgklkv~~~--------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia  178 (265)
T 3b2a_A          112 TFLK-----AAKTLVSLLESPDDMMRIETIDVLSKLQPLED--------SKLVRTYINELVVSPDLYTKVAGFCLFLNML  178 (265)
T ss_dssp             HHHH-----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred             HHHH-----HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence            3333     35578888999999999999999999932221        1125778888999999999999999999998


Q ss_pred             HhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088          342 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  400 (431)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~  400 (431)
                      ...+..+.         +      .+.++-+..+++++++.++++|..+++..++.--.
T Consensus       179 ~~S~D~~i---------~------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~  222 (265)
T 3b2a_A          179 NSSADSGH---------L------TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL  222 (265)
T ss_dssp             GGCSSCCC---------G------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC
T ss_pred             cccCCHHH---------H------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc
Confidence            76543221         1      23345578889999999999999999999886444

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.83  E-value=3.3e-08  Score=85.88  Aligned_cols=191  Identities=10%  Similarity=0.085  Sum_probs=141.2

Q ss_pred             HHHHhccccchhHHHHHHHHHHH-hhcCCCCCC--hhhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhccCCh-HHHH-
Q 014088          106 LLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL--FEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ-  179 (431)
Q Consensus       106 l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~-~~~~-  179 (431)
                      +...+ .+.++.-|..++..|.. ++.+.+...  ......++..+.+.+ ++.+..++..++.+++.++.+-. .... 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            44555 67899999999999999 886543322  222356788899999 78899999999999999985432 1222 


Q ss_pred             HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC
Q 014088          180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  259 (431)
Q Consensus       180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  259 (431)
                      .... .+++.++..+.+....|+..+..++..++...+.......-..+++.|...|++. ++.+|..++.+|+.++...
T Consensus       100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            1222 4788999999998899999999999888864321100000013577888999998 8999999999999998633


Q ss_pred             H---HHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          260 V---NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       260 ~---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      .   ......+...++|.+.+++.+.+.+||..|..+++.++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3   444444424689999999999999999999999998864

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.73  E-value=3.9e-08  Score=85.43  Aligned_cols=193  Identities=10%  Similarity=0.123  Sum_probs=140.6

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHH-hcCCChHHHHHHHH-cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCCh-h
Q 014088           64 FVRLLSSPTDDVREQAVWALGN-VAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLF-E  139 (431)
Q Consensus        64 L~~lL~~~~~~v~~~a~~~L~~-l~~~~~~~~~~i~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~-~  139 (431)
                      +.+.+++.++.-|..++..|.. ++...+........ ...+..+.+.+..+.+..++..|+.++..++.+-. ..-. .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4556788999999999999999 87432221100000 12355666777567789999999999999997543 2333 4


Q ss_pred             hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh-
Q 014088          140 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-  218 (431)
Q Consensus       140 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~-  218 (431)
                      ....++|.++..+.+..+.++..+..++..++...+.....-.-..+++.+...+.+.++.++..++.+|..++..... 
T Consensus       101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~  180 (249)
T 2qk1_A          101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG  180 (249)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence            5577999999999999999999999998888764321100000013677888999999999999999999999875542 


Q ss_pred             --hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088          219 --QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  257 (431)
Q Consensus       219 --~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  257 (431)
                        .....+...+++.+.+.+.++ +..+|..|..+++.++.
T Consensus       181 ~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          181 YSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence              222334247899999999998 99999999999999875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.67  E-value=1e-06  Score=89.65  Aligned_cols=301  Identities=16%  Similarity=0.144  Sum_probs=204.0

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC--CChhhH
Q 014088           64 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQT  141 (431)
Q Consensus        64 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~  141 (431)
                      +++.+...+..-+..+...+.++.......+  ....+.+..+.+.+....+.   +.|+.++..++...+.  ......
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence            4444444333334455566666543221100  00113566677777433333   8999999999976622  233344


Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH-HHHHHHHhCcHHHHHHhcCCC-CcccHHHHHHHHhHhhcCChhh
Q 014088          142 RPALPALERLIHSNDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQ  219 (431)
Q Consensus       142 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~  219 (431)
                      -+++|.++..+.+....|+..|-.++..+...-+. ...     .+++.|+..+.+. .+..+..|+.++..++...+.+
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~  168 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ  168 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence            57889999999999999999988888877754333 222     5678888888654 6899999999999999765544


Q ss_pred             hHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc--CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          220 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       220 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                      ....+. .++|.+.+.+.+. .++++..|..++..+|.  .|.+.      ..++|.|++.+.+++.  ..+++..|+.-
T Consensus       169 ~~~~~~-~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~  238 (986)
T 2iw3_A          169 VALRMP-ELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGAT  238 (986)
T ss_dssp             HHHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred             HHHhcc-chhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence            443333 6889999999888 89999999999999987  44542      2479999999998843  44556666555


Q ss_pred             cCCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh
Q 014088          298 TSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL  375 (431)
Q Consensus       298 ~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l  375 (431)
                      ....  +......     .++.|.+-|......+.+.+.-++.||++.-+....         ...++...  ++.++..
T Consensus       239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~---------~~~f~~~l--~p~~~~~  302 (986)
T 2iw3_A          239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV---------IAPFLGKL--LPGLKSN  302 (986)
T ss_dssp             CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH---------HHHHHTTT--HHHHHHH
T ss_pred             eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH---------Hhhhhhhh--hhHHHHH
Confidence            4433  2222222     367777788888889999999999999986655432         34444332  5666665


Q ss_pred             -hcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088          376 -QSHDNTEIYEKAVKILETYWVEEDE  400 (431)
Q Consensus       376 -~~~~~~~v~~~a~~~l~~~~~~e~~  400 (431)
                       ....+||+|+.|.+++..+..-...
T Consensus       303 ~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          303 FATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             TTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhccCCHHHHHHHHHHHHHHHHhhcc
Confidence             5678999999999999988765443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.56  E-value=1.7e-08  Score=78.61  Aligned_cols=112  Identities=20%  Similarity=0.192  Sum_probs=92.9

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  104 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  104 (431)
                      +.+++++.+|..|+++|+.+..            ..++.|+.+|+++++.+|..++++|+++..  +.         .++
T Consensus        20 ~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~---------a~~   76 (131)
T 1te4_A           20 HMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--ER---------AVE   76 (131)
T ss_dssp             -CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH---------HHH
T ss_pred             HhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH---------HHH
Confidence            3456778999999999887643            136999999999999999999999999863  11         477


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088          105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  170 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  170 (431)
                      .|+..+ .++++.++..++++|..+..          ...++.|..+++++++.++..++++|..+
T Consensus        77 ~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           77 PLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             HHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             HHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence            888888 78899999999999999863          35789999999999999999999988653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.52  E-value=1.4e-05  Score=81.41  Aligned_cols=247  Identities=14%  Similarity=0.185  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHcCCC---hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc
Q 014088           35 FEAAWALTNIASGT---SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN  111 (431)
Q Consensus        35 ~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~  111 (431)
                      +.|+.++..++...   +..--+++  +.+|.++..+.+....++..|-.++..+...-+...  +  ...++.|+..+.
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~  143 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIV  143 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhc
Confidence            89999999998533   12223333  688999999988889999988888877764322211  1  225788999996


Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHH
Q 014088          112 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRL  190 (431)
Q Consensus       112 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L  190 (431)
                      ....+..+..|+.++..|+...+.........++|.+...+.+..+++...+..++..++.--. ..++     .++|.|
T Consensus       144 ~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~  218 (986)
T 2iw3_A          144 ETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSL  218 (986)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHH
Confidence            6668999999999999999875433334457899999999999999999999999988875321 1122     678999


Q ss_pred             HHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc--CCHHHHHHHHH
Q 014088          191 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIE  268 (431)
Q Consensus       191 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~  268 (431)
                      +..+.+++.  ...++..|+.-..-.......+  +=.+|.|..-|... ...+++.++-++.|+|.  .+|.....++.
T Consensus       219 ~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~  293 (986)
T 2iw3_A          219 IQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG  293 (986)
T ss_dssp             HHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT
T ss_pred             HHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh
Confidence            999988743  5556666665544332111111  12357777778777 78889999999999998  67776666654


Q ss_pred             hCCHHHHHHHHccC-CHhHHHHHHHHHHHhc
Q 014088          269 AGIIGPLVNLLLNA-EFEIKKEAAWAISNAT  298 (431)
Q Consensus       269 ~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~  298 (431)
                       .++|.+-+....- ++++|+.|..++..+.
T Consensus       294 -~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          294 -KLLPGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             -TTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             -hhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence             4777777766654 8999988888887773

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.51  E-value=2.4e-08  Score=77.65  Aligned_cols=121  Identities=17%  Similarity=0.210  Sum_probs=93.3

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 014088           58 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL  137 (431)
Q Consensus        58 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  137 (431)
                      ...++.+..+|+++++.+|..++++|+.+...            .++.|+..| .++++.++..++++|.++..      
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------
Confidence            35688899999999999999999999877421            257888888 67899999999999998863      


Q ss_pred             hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHh
Q 014088          138 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  212 (431)
Q Consensus       138 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l  212 (431)
                          ...++.|..+++++++.++..++++|+++..           ...++.|..++.++++.++..++.+|+.+
T Consensus        72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                3578999999999999999999999998862           13467888999989999999999988754

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.49  E-value=4.3e-05  Score=70.79  Aligned_cols=320  Identities=13%  Similarity=0.093  Sum_probs=190.5

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCCh---HhHHHHHhCCCh-HHHHH-hhCCCCHHHHHHHHHHHHHhcCCChHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTS---ENTRVVIDHGAV-PIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCR   94 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~i-~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~   94 (431)
                      .++.+|.....+++....+..+..+...++   .....+.+..-. ..+.. ++..+++-....+..++..++...+...
T Consensus        81 ~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~~~  160 (480)
T 1ho8_A           81 PLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNV  160 (480)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCH
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCCccH
Confidence            355588878888999999999999887665   333444443322 22333 3443445555666666566653322211


Q ss_pred             HHHHHcCChH--HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhH--hhhHHHHHHhhcC---------------C
Q 014088           95 DLVLSNGALM--PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT--RPALPALERLIHS---------------N  155 (431)
Q Consensus        95 ~~i~~~~~i~--~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~lL~~---------------~  155 (431)
                      +.+..  .+.  -++..|...++.+.+..++.+|..|.+....+.....  ...+|.++.+++.               +
T Consensus       161 ~~l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~  238 (480)
T 1ho8_A          161 KLVEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSN  238 (480)
T ss_dssp             HHHHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------
T ss_pred             hHHHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCC
Confidence            11100  112  3445553322344566788889888887544433322  3356666554431               1


Q ss_pred             --ChHHHHHHHHHHHHhccCChHHHHHHHHhCcH--HHHHHhcCC-CCcccHHHHHHHHhHhhcCCh----hhhH-HHhh
Q 014088          156 --DDEVLTDACWALSYLSDGTNDKIQAVIEAGVC--PRLVELLRH-PSPSVLIPALRTVGNIVTGDD----MQTQ-CIIN  225 (431)
Q Consensus       156 --~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~----~~~~-~~~~  225 (431)
                        ...++.+++.++.-++-.++ ..+.+...++.  ..|+.+++. ...++.+-++.++.|+.....    .... .++.
T Consensus       239 ~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~  317 (480)
T 1ho8_A          239 HLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL  317 (480)
T ss_dssp             CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH
Confidence              24668889999888887754 44545554533  456666654 678899999999999988652    1112 2333


Q ss_pred             cCChHHHHHHhccc-c-hhhHHHHHHHHHHHhhc-----C-CHHHHHHHH----------------H----------hCC
Q 014088          226 HQALPCLLDLLTQN-Y-KKSIKKEACWTISNITA-----G-NVNQIQAII----------------E----------AGI  271 (431)
Q Consensus       226 ~~~l~~L~~lL~~~-~-~~~v~~~a~~~L~nl~~-----~-~~~~~~~l~----------------~----------~~~  271 (431)
                      .++++ +++.|... . ++++....-+..-.|..     . -+++..++.                .          -.+
T Consensus       318 ~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~l  396 (480)
T 1ho8_A          318 GNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKI  396 (480)
T ss_dssp             HCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHH
T ss_pred             ccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHH
Confidence            34444 44444322 1 34443332222111111     0 122222221                1          124


Q ss_pred             HHHHHHHHcc----------CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088          272 IGPLVNLLLN----------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  341 (431)
Q Consensus       272 i~~L~~ll~~----------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~  341 (431)
                      +..|+++|..          .++.+..-|+.=|+.++.+.+ ..+..+-+.|+=..+++++.++|++++..|+.++..++
T Consensus       397 lk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P-~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          397 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLP-ESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCT-THHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCc-chhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            7889999973          367788889999999998753 66666667888899999999999999999999999988


Q ss_pred             Hhh
Q 014088          342 KAG  344 (431)
Q Consensus       342 ~~~  344 (431)
                      ...
T Consensus       476 ~~~  478 (480)
T 1ho8_A          476 GYT  478 (480)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.36  E-value=4.8e-05  Score=79.57  Aligned_cols=350  Identities=9%  Similarity=0.056  Sum_probs=196.1

Q ss_pred             hhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-----
Q 014088           16 FVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-----   90 (431)
Q Consensus        16 ~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----   90 (431)
                      .++..+++.+.+.+ +.+|.+.+.++..++...-.. ++   .++++.|++.+++++...+..++.++..++...     
T Consensus        85 ~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p~-~W---p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~  159 (960)
T 1wa5_C           85 LIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFPD-RW---PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR  159 (960)
T ss_dssp             HHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHSTT-TC---TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred             HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCcc-ch---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            44555666776554 789999999999887621110 00   368899999998888888999999999998632     


Q ss_pred             -hHHHHHHH--HcCChHHHHHH-------hcccc-c-------hhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHh
Q 014088           91 -PKCRDLVL--SNGALMPLLAQ-------FNEHA-K-------LSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL  151 (431)
Q Consensus        91 -~~~~~~i~--~~~~i~~l~~~-------l~~~~-~-------~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~l  151 (431)
                       ++.+..+.  -....+.++.+       +.... +       .++...++.+++.+.... +..........++.+..+
T Consensus       160 ~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~  239 (960)
T 1wa5_C          160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKY  239 (960)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence             22222111  01123333333       32211 1       133344666777765433 221112234455666666


Q ss_pred             hcCC------C---------hHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-----CCCcccHHHHHHHHhH
Q 014088          152 IHSN------D---------DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-----HPSPSVLIPALRTVGN  211 (431)
Q Consensus       152 L~~~------~---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~l~~  211 (431)
                      +...      +         ..+++.++.++..+....+........ .+++.....+.     ..+..++..++..+..
T Consensus       240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~  318 (960)
T 1wa5_C          240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTA  318 (960)
T ss_dssp             HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred             HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence            6421      1         246788899998887655443332222 45555555553     2345678888888888


Q ss_pred             hhcCChhhhHHHhh-cCChHHHH-----HHhcc----------------------cchhhHHHHHHHHHHHhhcCCHHHH
Q 014088          212 IVTGDDMQTQCIIN-HQALPCLL-----DLLTQ----------------------NYKKSIKKEACWTISNITAGNVNQI  263 (431)
Q Consensus       212 l~~~~~~~~~~~~~-~~~l~~L~-----~lL~~----------------------~~~~~v~~~a~~~L~nl~~~~~~~~  263 (431)
                      ++.... .. .++. .+.++.++     ..+.-                      ......|..|..+|..++...++..
T Consensus       319 ~~~~~~-~~-~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v  396 (960)
T 1wa5_C          319 VTRIPK-YF-EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV  396 (960)
T ss_dssp             HHTSHH-HH-GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH
T ss_pred             HhCcHh-HH-HHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH
Confidence            765322 11 1111 12233333     22210                      0012567788888888876433211


Q ss_pred             HHHHHhCCHHHHHHHHc------cCCHhHHHHHHHHHHHhcCCCC-HH----------HHHHHHHCCChHHHHhhcCCC-
Q 014088          264 QAIIEAGIIGPLVNLLL------NAEFEIKKEAAWAISNATSGGS-NE----------QIKFLVSQGCIKPLCDLLNCP-  325 (431)
Q Consensus       264 ~~l~~~~~i~~L~~ll~------~~~~~v~~~a~~aL~~l~~~~~-~~----------~~~~l~~~~~l~~L~~ll~~~-  325 (431)
                         +. .+++.+.+.+.      +.++..|+.|+.+++.++.... ..          ....+..    ..+...+.++ 
T Consensus       397 ---~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~  468 (960)
T 1wa5_C          397 ---TN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNN  468 (960)
T ss_dssp             ---HH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSS
T ss_pred             ---HH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCC
Confidence               11 13344444454      4578899999999999975421 00          1111111    1122233444 


Q ss_pred             --CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088          326 --DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       326 --~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  397 (431)
                        ++.++..+++++.++...-.              ...+  ...++.+...+.++++.|+..|..++.++...
T Consensus       469 ~~~p~vr~~a~~~lg~~~~~~~--------------~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          469 IPHIILRVDAIKYIYTFRNQLT--------------KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             CSCHHHHHHHHHHHHHTGGGSC--------------HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCceehHHHHHHHHHHHhhCC--------------HHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence              88999999999998875421              1111  22345555566678899999999999998864

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.33  E-value=0.00029  Score=73.43  Aligned_cols=312  Identities=10%  Similarity=0.119  Sum_probs=179.1

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhcCCC---h--HH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS---P--KC   93 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~---~--~~   93 (431)
                      .+.++|..+.++++...++.++......-+  ...+.+.+.++.+. .+|.  ++.++..|+.||..+....   +  ..
T Consensus       198 ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~  273 (1023)
T 4hat_C          198 LCFQVLEQGASSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLI  273 (1023)
T ss_dssp             HHHHHHHHCSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHH
Confidence            455566666778899999999999887422  45677889999999 8884  6789999999999998632   2  12


Q ss_pred             HHHHHH--cCChHHH-----------HHHh--ccccchhHHHHHHHHHHHhhcCCCCC-----C-hhhHhhhHHHHHHhh
Q 014088           94 RDLVLS--NGALMPL-----------LAQF--NEHAKLSMLRNATWTLSNFCRGKPQP-----L-FEQTRPALPALERLI  152 (431)
Q Consensus        94 ~~~i~~--~~~i~~l-----------~~~l--~~~~~~~~~~~a~~~L~~l~~~~~~~-----~-~~~~~~~i~~L~~lL  152 (431)
                      ...+..  .+.+..+           -..+  ....|.+.....+.++..+.......     . ......++..++.+-
T Consensus       274 ~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~  353 (1023)
T 4hat_C          274 KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLS  353 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhh
Confidence            211111  0011111           1111  12335677777777776665543110     0 111122334555655


Q ss_pred             cCCChHHHHHHHHHHHHhccC---C---hHHHHHHHHhCcHHHHHHhcCCCC---------ccc---------HHHHH--
Q 014088          153 HSNDDEVLTDACWALSYLSDG---T---NDKIQAVIEAGVCPRLVELLRHPS---------PSV---------LIPAL--  206 (431)
Q Consensus       153 ~~~~~~v~~~a~~~L~~l~~~---~---~~~~~~~~~~~~i~~L~~ll~~~~---------~~v---------~~~a~--  206 (431)
                      ..++.++...++.....++..   .   ......+.. .+++.++..+..+.         .++         .....  
T Consensus       354 ~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~  432 (1023)
T 4hat_C          354 KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKS  432 (1023)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHH
Confidence            667888888888777766541   0   011111111 35555665555433         111         01111  


Q ss_pred             --HHHhHhhcCChhhhHHHhhcCChHHHHHHhcc-cchhhHHHHHHHHHHHhhcCC-HHHHHHHHHhCCHHHHHHHHcc-
Q 014088          207 --RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLN-  281 (431)
Q Consensus       207 --~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~-  281 (431)
                        .+|..++.-....   .+. -.++.+.+.+.+ ..+...++.++|+++.++.+. ++.....+. .+++.|+.++.. 
T Consensus       433 ~Rd~L~~l~~l~~~~---~~~-~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~  507 (1023)
T 4hat_C          433 EREVLVYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKK  507 (1023)
T ss_dssp             HHHHHHHHHHHCHHH---HHH-HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccCHHH---HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhcc
Confidence              2222222111100   000 123334444443 127899999999999999853 332333333 268888888864 


Q ss_pred             ----CCHhHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          282 ----AEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       282 ----~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                          +...++..++|+++.++..-  .++..+     .++..|++.+..+++.++..|+++|.++++.+..
T Consensus       508 ~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             CSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence                24456678889999876532  122222     2567778878778899999999999999987664

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.30  E-value=2.8e-05  Score=68.45  Aligned_cols=187  Identities=15%  Similarity=0.102  Sum_probs=138.2

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHh
Q 014088          145 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII  224 (431)
Q Consensus       145 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  224 (431)
                      ...+++-|.+++.+.+..++.-|..+...+.+....++..+++..|+......+..+...+++++.+++.+.+..-..+-
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            34556666678888899999999996666667888899999999999999999999999999999999986543323233


Q ss_pred             hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH--------h--CCHHHHHHHHc---cCCHhHHHHHH
Q 014088          225 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------A--GIIGPLVNLLL---NAEFEIKKEAA  291 (431)
Q Consensus       225 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~v~~~a~  291 (431)
                      ....+..+..++.+. ...+.+.|+..|-.++..++.....+.+        .  ..++.|+.+|+   ..+.+++.+|+
T Consensus       200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            556788899999876 8999999999999998754433332222        1  23889999997   66999999999


Q ss_pred             HHHHHhcCCCC-HH----HHHHHHHCCChHHHHhhcCCC--CHHHHHH
Q 014088          292 WAISNATSGGS-NE----QIKFLVSQGCIKPLCDLLNCP--DPRIVTV  332 (431)
Q Consensus       292 ~aL~~l~~~~~-~~----~~~~l~~~~~l~~L~~ll~~~--~~~v~~~  332 (431)
                      ..|-.+..+.+ .+    ....+.+.|+-..+...++..  +++++..
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            98887776543 22    233344556556667767654  5565544

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.23  E-value=3e-05  Score=68.27  Aligned_cols=189  Identities=12%  Similarity=0.135  Sum_probs=141.0

Q ss_pred             HHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHH-
Q 014088          189 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-  267 (431)
Q Consensus       189 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-  267 (431)
                      .++..|.+.+...++.++.-|..+..........+++.+++..|+++..+. +...+..++.+++++..+ .+....++ 
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs  199 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhC
Confidence            344555566777788899999986555566888899999999999999988 999999999999999886 55555555 


Q ss_pred             HhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHH----------CCChHHHHhhcC---CCCHHHHHHHH
Q 014088          268 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS----------QGCIKPLCDLLN---CPDPRIVTVCL  334 (431)
Q Consensus       268 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~----------~~~l~~L~~ll~---~~~~~v~~~al  334 (431)
                      ...++..+..++.+.+..|.+.|+..|..++.... .....+.+          ....+.|+..++   ..+.+++.+++
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            45678999999998889999999999999987652 11111111          124788999997   67899999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC--CHHHHHH
Q 014088          335 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEK  386 (431)
Q Consensus       335 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~  386 (431)
                      ..|..++........      ...+...+.+.|.-..+...+...  +++++++
T Consensus       279 tLIN~lL~~apd~d~------~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDS------FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHH------HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhH------HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            999999887553221      112567788887666777766554  6777654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.19  E-value=0.00039  Score=72.78  Aligned_cols=339  Identities=13%  Similarity=0.114  Sum_probs=188.8

Q ss_pred             cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088           27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL---SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  103 (431)
Q Consensus        27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  103 (431)
                      .+.+...++.++++++.++.+..+..     ...++.++..+   .++++.++..++|+++.++..-.....  .-...+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV--MINSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH--HHTTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH--HHHHHH
Confidence            34567889999999999987543211     23344455443   335788999999999999853211111  223578


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCCh-HHHHH
Q 014088          104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTN-DKIQA  180 (431)
Q Consensus       104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~-~~~~~  180 (431)
                      +.++..+ .+  +.++..|++++.+++...+..-......++..+..++...  +.+.+..+..+++.++...+ +....
T Consensus       532 ~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~  608 (963)
T 2x19_B          532 PLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK  608 (963)
T ss_dssp             HHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            8888888 33  7899999999999997643222233466677777777753  57889999999999876543 33332


Q ss_pred             HHHhCcHHHHHHhc----CCC-CcccHH---HHHHHHhHhhcCChh---------------------hhHHHhhcCChHH
Q 014088          181 VIEAGVCPRLVELL----RHP-SPSVLI---PALRTVGNIVTGDDM---------------------QTQCIINHQALPC  231 (431)
Q Consensus       181 ~~~~~~i~~L~~ll----~~~-~~~v~~---~a~~~l~~l~~~~~~---------------------~~~~~~~~~~l~~  231 (431)
                      ..+ .+++.+...+    ... +++.+.   ..+.+++.+...-..                     ....-+...+++.
T Consensus       609 ~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (963)
T 2x19_B          609 NLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQL  687 (963)
T ss_dssp             HHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHH
Confidence            332 3444444433    222 333333   344444444322110                     0001112234555


Q ss_pred             HHHHhccc-chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHH----cc-CCHhHHHHHHHHHHHhcC--CCCH
Q 014088          232 LLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL----LN-AEFEIKKEAAWAISNATS--GGSN  303 (431)
Q Consensus       232 L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~-~~~~v~~~a~~aL~~l~~--~~~~  303 (431)
                      +..++... .+..+.+.++.++..++..-.+...     ..++.++..+    .. +.+    ..++.++.++.  ...+
T Consensus       688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~~  758 (963)
T 2x19_B          688 IQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHEP  758 (963)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCCc
Confidence            55555432 1467888888888887642111111     1234433332    22 222    23344444433  1111


Q ss_pred             ---HHHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcch-HHHHHHhhccHHHHHHhh
Q 014088          304 ---EQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL-FAQAIDDAEGLEKIENLQ  376 (431)
Q Consensus       304 ---~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~l~~l~  376 (431)
                         .....+. ..++..+..++.   ..+++++......+..+++.....--.     ... +..      .++.+...+
T Consensus       759 ~~~~~~~~~l-~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~------i~~~~~~~l  826 (963)
T 2x19_B          759 AHFPPIEALF-LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKA------VFQCAVLAL  826 (963)
T ss_dssp             TTCHHHHHHH-HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHH------HHHHHHHHT
T ss_pred             chHHHHHHHH-HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHH------HHHHHHHHc
Confidence               1111111 112333333333   246899999999999999876543100     000 111      233344456


Q ss_pred             cCCCHHHHHHHHHHHHHhcCC
Q 014088          377 SHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       377 ~~~~~~v~~~a~~~l~~~~~~  397 (431)
                      .+++.++.+.+...+..+...
T Consensus       827 ~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          827 KFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             TCSCHHHHHHHHHHHHHHGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHhc
Confidence            789999999999999888764

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.19  E-value=0.00065  Score=71.17  Aligned_cols=348  Identities=11%  Similarity=0.073  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHHHHcCCChHh------------HHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCC-----
Q 014088           32 AVQFEAAWALTNIASGTSEN------------TRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGD-----   89 (431)
Q Consensus        32 ~~~~~a~~~L~~l~~~~~~~------------~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~-----   89 (431)
                      +.....++.+..++......            ...+.  .+++.++.+...     .++.+...+++.+..++..     
T Consensus       311 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~  388 (971)
T 2x1g_F          311 DIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMS  388 (971)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence            66667777777666422211            11111  455666665533     4778888999888877531     


Q ss_pred             ----ChHHHHHHHH--cCChHHHHHHhccccc--------------hhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHH
Q 014088           90 ----SPKCRDLVLS--NGALMPLLAQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE  149 (431)
Q Consensus        90 ----~~~~~~~i~~--~~~i~~l~~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~  149 (431)
                          .+.....+..  ...++.++..+....+              ...|..+..+|..++...+   ......+++.+.
T Consensus       389 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~  465 (971)
T 2x1g_F          389 NDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLD  465 (971)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHH
Confidence                1111111110  1234445555522111              1355667777777775432   223334445555


Q ss_pred             HhhcC-----CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCcccHHHHHHHHhHhhcCChhhhHHH
Q 014088          150 RLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCI  223 (431)
Q Consensus       150 ~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~  223 (431)
                      ..+.+     .+...++.++.+++.++..........+. .+++.+..+.. +.++.++..++++++.++..-....+ .
T Consensus       466 ~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~  543 (971)
T 2x1g_F          466 EAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-Y  543 (971)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----C
T ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-H
Confidence            55543     57788999999999998775433211111 23332222221 24788999999999998853221111 1


Q ss_pred             hhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCC
Q 014088          224 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       224 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~  301 (431)
                      + ..+++.++..| +   +.++..|++++.+++...........+ .++..+..++..+  +...+..+..+++.++...
T Consensus       544 l-~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          544 I-PPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             H-HHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             H-HHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence            1 13455566666 2   678999999999999754544444443 3677777888774  5788899999999987643


Q ss_pred             C-HHHHHHHHH--CCChHHHHhhcCCC--CHHHH---HHHHHHHHHHHHhhhhhhhcCCCC--CcchHHHHHHhhccHHH
Q 014088          302 S-NEQIKFLVS--QGCIKPLCDLLNCP--DPRIV---TVCLEGLENILKAGEAEKNMGNTG--GVNLFAQAIDDAEGLEK  371 (431)
Q Consensus       302 ~-~~~~~~l~~--~~~l~~L~~ll~~~--~~~v~---~~al~~L~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~  371 (431)
                      . .+...++..  ..++..+...++..  +++.+   ..++..|..++..-.........+  ....+...+.  ..++.
T Consensus       618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~  695 (971)
T 2x1g_F          618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ--RTMPI  695 (971)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHH--TTHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH--HHHHH
Confidence            2 233333322  11233333333332  33222   334455555544322110000000  0111233332  33555


Q ss_pred             HHHhhc-C-CCHHHHHHHHHHHHHh
Q 014088          372 IENLQS-H-DNTEIYEKAVKILETY  394 (431)
Q Consensus       372 l~~l~~-~-~~~~v~~~a~~~l~~~  394 (431)
                      +..++. . .+.++.+.+.+++...
T Consensus       696 l~~~l~~~~~~~~v~e~~~~~~~~~  720 (971)
T 2x1g_F          696 FKRIAEMWVEEIDVLEAACSAMKHA  720 (971)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHH
Confidence            555543 2 4778888888888763

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.18  E-value=0.00032  Score=73.51  Aligned_cols=291  Identities=12%  Similarity=0.021  Sum_probs=164.1

Q ss_pred             CChHHHHHHHHHHHHHcCCChH-hHHHHHhCCChHHHHH-------hhCCCC---HHHHHHHHHHHHHhcCCChHH-H--
Q 014088           29 CFGAVQFEAAWALTNIASGTSE-NTRVVIDHGAVPIFVR-------LLSSPT---DDVREQAVWALGNVAGDSPKC-R--   94 (431)
Q Consensus        29 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~-------lL~~~~---~~v~~~a~~~L~~l~~~~~~~-~--   94 (431)
                      ++++++..|+.++..+....+. .+...+. .+++.++.       .+...+   +......++.+..++...... .  
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999998863221 1111111 12333333       223334   366666677777666332211 1  


Q ss_pred             ---------HHHHHcCChHHHHHHhcc----ccchhHHHHHHHHHHHhhcCC--------CCCChh----hHhhhHHHHH
Q 014088           95 ---------DLVLSNGALMPLLAQFNE----HAKLSMLRNATWTLSNFCRGK--------PQPLFE----QTRPALPALE  149 (431)
Q Consensus        95 ---------~~i~~~~~i~~l~~~l~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~~----~~~~~i~~L~  149 (431)
                               ..+.  ..++.++.....    ..++++...+++.+..++...        ......    ....+++.++
T Consensus       335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~  412 (971)
T 2x1g_F          335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV  412 (971)
T ss_dssp             HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence                     1111  233444444322    247788999999888876521        011111    2234445555


Q ss_pred             HhhcCC-C--------------hHHHHHHHHHHHHhccCChH-HHHHHHHhCcHHHHHHhcCC-----CCcccHHHHHHH
Q 014088          150 RLIHSN-D--------------DEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRT  208 (431)
Q Consensus       150 ~lL~~~-~--------------~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~  208 (431)
                      ..+..+ +              ...|..+..++..++...++ ....     +++.+...+..     .++..++.++.+
T Consensus       413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~  487 (971)
T 2x1g_F          413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYS  487 (971)
T ss_dssp             HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence            444322 1              13566677777776655432 2221     12223333322     577889999999


Q ss_pred             HhHhhcCChhhhHHHhhcCChHHHHHHh---c--ccchhhHHHHHHHHHHHhhcC---CHHHHHHHHHhCCHHHHHHHHc
Q 014088          209 VGNIVTGDDMQTQCIINHQALPCLLDLL---T--QNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLL  280 (431)
Q Consensus       209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL---~--~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~  280 (431)
                      ++.++.+......     ..++.+++++   .  +. ++.+|..++|+++.++..   .++...     .+++.++..+ 
T Consensus       488 l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~-----~vl~~l~~~l-  555 (971)
T 2x1g_F          488 FQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP-----PAINLLVRGL-  555 (971)
T ss_dssp             HHHTTTC-----------CHHHHHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH-----HHHHHHHHHH-
T ss_pred             HHHHHhhcChhhh-----HHHHHHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHh-
Confidence            9999876543221     2334444433   2  23 689999999999998851   122111     2466666666 


Q ss_pred             cCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHh
Q 014088          281 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       281 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~al~~L~~l~~~  343 (431)
                      +  +.++..|++++.+++.........++  ..++..+..++..  .+.+.+..++.++..++..
T Consensus       556 ~--~~v~~~A~~al~~l~~~~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          556 N--SSMSAQATLGLKELCRDCQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             H--SSCHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             C--hHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            2  78999999999999976543433333  2367777777776  3578888999999999864

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.14  E-value=0.00017  Score=75.48  Aligned_cols=251  Identities=10%  Similarity=0.087  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhcCCC--h-----------H
Q 014088           32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS------SPTDDVREQAVWALGNVAGDS--P-----------K   92 (431)
Q Consensus        32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~~l~~~~--~-----------~   92 (431)
                      ..|..|..+|..++....   +.+.. -+++.+.+.+.      +.++..++.|+.+++.++...  .           .
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            466677777777775322   11111 13334444444      467889999999999997431  1           1


Q ss_pred             HHHHHHHcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 014088           93 CRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY  169 (431)
Q Consensus        93 ~~~~i~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  169 (431)
                      ....+     ...++..+ .++   ++-+|..++|+++.++..-   .......+++.++..+.+++..|+..|+++|.+
T Consensus       452 l~~~l-----~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~  522 (960)
T 1wa5_C          452 VVDFF-----TKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEK  522 (960)
T ss_dssp             HHHHH-----HHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHH-----HHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            11110     11233334 334   7899999999999999863   234567889999999998889999999999999


Q ss_pred             hccCC-----------hHHHHHHHHhCcHHHHHHhcCCCC-----cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHH
Q 014088          170 LSDGT-----------NDKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL  233 (431)
Q Consensus       170 l~~~~-----------~~~~~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~  233 (431)
                      ++...           ........ ..+++.|..++....     ......++.++..++............ .+++.+.
T Consensus       523 ~~~~~~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~  600 (960)
T 1wa5_C          523 ILTIRESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFI  600 (960)
T ss_dssp             HTTCBSCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHH
T ss_pred             HHhcccccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHH
Confidence            88641           11111111 145666667766531     113345666666654322111111111 1233333


Q ss_pred             HHh----cccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088          234 DLL----TQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  298 (431)
Q Consensus       234 ~lL----~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  298 (431)
                      ..+    +++.+...+..++.+++.++.. .++....+. ..++|.+..++.....+....+..++..+.
T Consensus       601 ~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          601 EIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence            333    3443567777788888888874 444444433 346788888887665556655655555443

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.11  E-value=0.0053  Score=64.81  Aligned_cols=314  Identities=11%  Similarity=0.134  Sum_probs=172.3

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCC--hH---H
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDS--PK---C   93 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~--~~---~   93 (431)
                      .+.+++..++++.++..++.++.+....-+  ...+.+..+++.+.. ++  .++.++..++.+|..+....  +.   .
T Consensus       198 ~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~  273 (1049)
T 3m1i_C          198 LCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLI  273 (1049)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhH
Confidence            345566666677899999999998776333  233555677777773 44  37899999999999988542  21   1


Q ss_pred             HHHHHH--cCChHHHHH-H----------h--ccccchhHHHHHHHHHHHhhcCC------CCCChhhHhhhHHHHHHhh
Q 014088           94 RDLVLS--NGALMPLLA-Q----------F--NEHAKLSMLRNATWTLSNFCRGK------PQPLFEQTRPALPALERLI  152 (431)
Q Consensus        94 ~~~i~~--~~~i~~l~~-~----------l--~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~i~~L~~lL  152 (431)
                      ...+..  .+.+..+.. +          +  ..+.+.+.....+..+..+....      +.........+++.++.+.
T Consensus       274 ~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~  353 (1049)
T 3m1i_C          274 KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLS  353 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Confidence            111111  111221111 0          1  01224444455555554433210      1111222355677777777


Q ss_pred             cCCChHHHHHHHHHHHHhcc----CC--hHHHHHHHHhCcHHHHHHhcCCCC--------c--------------ccHHH
Q 014088          153 HSNDDEVLTDACWALSYLSD----GT--NDKIQAVIEAGVCPRLVELLRHPS--------P--------------SVLIP  204 (431)
Q Consensus       153 ~~~~~~v~~~a~~~L~~l~~----~~--~~~~~~~~~~~~i~~L~~ll~~~~--------~--------------~v~~~  204 (431)
                      ..++.++...++..+..++.    .+  ......+.. .+++.++..+..++        +              ..+..
T Consensus       354 ~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~  432 (1049)
T 3m1i_C          354 KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKS  432 (1049)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHH
Confidence            77788998888888877765    21  111111211 34555555553321        0              11223


Q ss_pred             HHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc-cchhhHHHHHHHHHHHhhcCCHHH-HHHHHHhCCHHHHHHHHcc-
Q 014088          205 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQ-IQAIIEAGIIGPLVNLLLN-  281 (431)
Q Consensus       205 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll~~-  281 (431)
                      +..+|..++...+...-.    -+.+.+.+.+.. ..++..++.++++++.++...... ...+.. .+++.+..+... 
T Consensus       433 ~~~~L~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~  507 (1049)
T 3m1i_C          433 EREVLVYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKK  507 (1049)
T ss_dssp             HHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSS
T ss_pred             HHHHHHHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhh
Confidence            455555555322211111    123444444542 226788999999999998643222 112111 244445544332 


Q ss_pred             ----CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          282 ----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       282 ----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                          +.+.++..++++++.++..-. .....+.  .+++.+++.+.++++.++..|+.+|.++++.+..
T Consensus       508 ~~~~~~~~v~~~~~~~lgry~~~~~-~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          508 RGKDNKAVVASDIMYVVGQYPRFLK-AHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCHHHHH-HCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHH-hHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                244555578899997764211 1112222  2577788888888899999999999999987653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.92  E-value=0.001  Score=69.42  Aligned_cols=144  Identities=9%  Similarity=0.031  Sum_probs=90.3

Q ss_pred             CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088           29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  103 (431)
Q Consensus        29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  103 (431)
                      .+...++.++++++.++....+....-.-..+++.|+.++..     +...++..++|+++.++..-......+.  ..+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHH
Confidence            568999999999999997554332211112467778887753     2345566788999998742111111111  133


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCC--------CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014088          104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--------PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  175 (431)
Q Consensus       104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--------~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  175 (431)
                      ..+++.+ ..+++.++..|++++.++|.....        ........++..+...+..-+.+-+..+..+++.+....+
T Consensus       543 ~~L~~~l-~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          543 LKLFEFM-HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HHHHHHT-TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHh-hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            4444445 455688999999999999985211        1111234455555555555677778889999998887644

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.87  E-value=0.00081  Score=70.38  Aligned_cols=297  Identities=11%  Similarity=0.035  Sum_probs=156.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCh-Hh-HHH---HHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH-------HH
Q 014088           30 FGAVQFEAAWALTNIASGTS-EN-TRV---VID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-------RD   95 (431)
Q Consensus        30 ~~~~~~~a~~~L~~l~~~~~-~~-~~~---~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------~~   95 (431)
                      +++++..|+.++..+..... .. ...   +..  .+..+.+.+.+...+.......+..+..+....+..       ..
T Consensus       252 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~  331 (963)
T 2x19_B          252 DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQ  331 (963)
T ss_dssp             STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchH
Confidence            57889999999999987432 11 111   111  011222222233345555556666666655321110       01


Q ss_pred             HHHHcCChHHHHHHhcc----ccchhHHHHHHHHHHHhhcCCCCC-------Ch----hhHhhhHHHHHHhhcCCCh---
Q 014088           96 LVLSNGALMPLLAQFNE----HAKLSMLRNATWTLSNFCRGKPQP-------LF----EQTRPALPALERLIHSNDD---  157 (431)
Q Consensus        96 ~i~~~~~i~~l~~~l~~----~~~~~~~~~a~~~L~~l~~~~~~~-------~~----~~~~~~i~~L~~lL~~~~~---  157 (431)
                      .+.  ..++.++.....    ..++++...++.....++......       ..    .....+++.++..+..++.   
T Consensus       332 ~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~  409 (963)
T 2x19_B          332 SFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEY  409 (963)
T ss_dssp             HHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence            111  234444444422    234555566666656665521110       01    1113334444444432211   


Q ss_pred             ------------HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc----CCCCcccHHHHHHHHhHhhcCChhhhH
Q 014088          158 ------------EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL----RHPSPSVLIPALRTVGNIVTGDDMQTQ  221 (431)
Q Consensus       158 ------------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~l~~l~~~~~~~~~  221 (431)
                                  +.|..+..+|..++...+..   +. .-+++.+...+    .+.++..+..++.+++.++.+..... 
T Consensus       410 ~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~---~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-  484 (963)
T 2x19_B          410 GFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE---LL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-  484 (963)
T ss_dssp             HTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH---HH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHccHH---HH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-
Confidence                        12444555555544322111   00 01223333444    45677788999999999987644221 


Q ss_pred             HHhhcCChHHHHHHh---cccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhc
Q 014088          222 CIINHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  298 (431)
Q Consensus       222 ~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  298 (431)
                          ...++.+++.+   ..+ ++.+|..++|+++.++..-.... ..+ ..+++.++..+.+  +.|+..|++++.+++
T Consensus       485 ----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~  555 (963)
T 2x19_B          485 ----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN--PELSVSSVSTLKKIC  555 (963)
T ss_dssp             ----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC--chHHHHHHHHHHHHH
Confidence                13344444444   334 67899999999999875211111 222 3578888888854  799999999999998


Q ss_pred             CCCCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhh
Q 014088          299 SGGSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAG  344 (431)
Q Consensus       299 ~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~al~~L~~l~~~~  344 (431)
                      .........++  ..++..+..++..  -+...+..+++++..++...
T Consensus       556 ~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          556 RECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             HHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence            64321111111  1245555556654  25678888899999988643

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.76  E-value=0.00037  Score=72.48  Aligned_cols=306  Identities=10%  Similarity=0.003  Sum_probs=168.9

Q ss_pred             CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC--hHHHHHHHHcCChHH
Q 014088           28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS--PKCRDLVLSNGALMP  105 (431)
Q Consensus        28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~~~i~~  105 (431)
                      +.++.++..++.++......-+  ...+++.+.++.+.++|..  +.++..|+.+|..+....  +..+..++..=.+..
T Consensus       204 ~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            3567899999999999987432  3456667888889988865  799999999999998433  332222222101122


Q ss_pred             HHHHhcc-ccchhHHHHHHHHHHHhh------cCCCC-CC-------hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088          106 LLAQFNE-HAKLSMLRNATWTLSNFC------RGKPQ-PL-------FEQTRPALPALERLIHSNDDEVLTDACWALSYL  170 (431)
Q Consensus       106 l~~~l~~-~~~~~~~~~a~~~L~~l~------~~~~~-~~-------~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  170 (431)
                      ++..+.. ..|.+..+..+..+..++      ...+. ..       .....++++.++.++.+++.++-..++..+..+
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            2222212 456666655554443322      11121 01       133467899999999998888877777666654


Q ss_pred             ccC----C-----hHHHHHHHHhCcHHHHHHhcCCCC-----c-----------ccHHHHHHHHhHhhcCChhhhHHHhh
Q 014088          171 SDG----T-----NDKIQAVIEAGVCPRLVELLRHPS-----P-----------SVLIPALRTVGNIVTGDDMQTQCIIN  225 (431)
Q Consensus       171 ~~~----~-----~~~~~~~~~~~~i~~L~~ll~~~~-----~-----------~v~~~a~~~l~~l~~~~~~~~~~~~~  225 (431)
                      ...    .     ......++. .+++.++..+..++     .           +.|......+..++.-.+......+-
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~  438 (980)
T 3ibv_A          360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY  438 (980)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            421    0     111111221 45555555554321     1           12322222222222211111111000


Q ss_pred             cCChHHHHHHhc---ccchhhHHHHHHHHHHHhhcCCHHHHHHHH-H----hCCHHHHHHHHc-----cCCHhHHHHHHH
Q 014088          226 HQALPCLLDLLT---QNYKKSIKKEACWTISNITAGNVNQIQAII-E----AGIIGPLVNLLL-----NAEFEIKKEAAW  292 (431)
Q Consensus       226 ~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~----~~~i~~L~~ll~-----~~~~~v~~~a~~  292 (431)
                      .-+.+.+.+.+.   +. ++..++.++.+++.++.+......... .    ..+++.+..++.     .+++.|+..+++
T Consensus       439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~  517 (980)
T 3ibv_A          439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME  517 (980)
T ss_dssp             HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            011122223332   23 688899999999999875322111000 0    013455555655     568899999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHCCChHH----HHh--hcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          293 AISNATSGGSNEQIKFLVSQGCIKP----LCD--LLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       293 aL~~l~~~~~~~~~~~l~~~~~l~~----L~~--ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                      +++..+..-..       ....++.    +++  -+..+++.++..|..++.++++.+..
T Consensus       518 ~l~rys~~~~~-------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          518 ILVRYASFFDY-------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHTGGGGGT-------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhc-------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            99998764310       1223444    444  44456778999999999999987764

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.71  E-value=0.011  Score=61.61  Aligned_cols=315  Identities=12%  Similarity=0.130  Sum_probs=173.1

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhcCC-ChHHHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIF-VRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLV   97 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i   97 (431)
                      .+.++|..+.++++...++.++..+...-+  ...+++.+.++.+ ..+|  .++.++..|+.||..+... .++....+
T Consensus       210 ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~  285 (1073)
T 3gjx_A          210 LCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQF  285 (1073)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHH
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHH
Confidence            344566667788888999999999887433  4567888999988 4676  4678999999999998753 22222222


Q ss_pred             HH--cCChHHHHHHh------------ccccchhHHHHHHHHHHHhhcCCCC-----CC-hhhHhhhHHHHHHhhcCCCh
Q 014088           98 LS--NGALMPLLAQF------------NEHAKLSMLRNATWTLSNFCRGKPQ-----PL-FEQTRPALPALERLIHSNDD  157 (431)
Q Consensus        98 ~~--~~~i~~l~~~l------------~~~~~~~~~~~a~~~L~~l~~~~~~-----~~-~~~~~~~i~~L~~lL~~~~~  157 (431)
                      ..  ...+..+-.++            ....+.+.....+.++..+.+....     .. ......++..++.+-..++.
T Consensus       286 ~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~  365 (1073)
T 3gjx_A          286 ETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEET  365 (1073)
T ss_dssp             HHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcH
Confidence            11  01111111222            1222445666666666665543200     00 11122344445666667888


Q ss_pred             HHHHHHHHHHHHhccC----C------------------hHHHHHH--HHhCcHHHHHHhcCCCCc---------c-cHH
Q 014088          158 EVLTDACWALSYLSDG----T------------------NDKIQAV--IEAGVCPRLVELLRHPSP---------S-VLI  203 (431)
Q Consensus       158 ~v~~~a~~~L~~l~~~----~------------------~~~~~~~--~~~~~i~~L~~ll~~~~~---------~-v~~  203 (431)
                      ++.+.++.....+...    .                  +.+...+  +-..+...++..+..+..         + +|.
T Consensus       366 ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re  445 (1073)
T 3gjx_A          366 EIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVRE  445 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHH
Confidence            9988888776655421    0                  0111100  011233334444443321         0 100


Q ss_pred             ------------HHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHHHHHHHHHhhcC-CHH-HHHHHHH
Q 014088          204 ------------PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAG-NVN-QIQAIIE  268 (431)
Q Consensus       204 ------------~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~-~~~~l~~  268 (431)
                                  ..-.++..++.-.......    -.++.+.+.+..+ .+....+.++|+++.++.. .++ ....+.+
T Consensus       446 ~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~  521 (1073)
T 3gjx_A          446 FMKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT  521 (1073)
T ss_dssp             ECSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred             HHhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH
Confidence                        1111222222111111111    1233344333332 2588899999999999864 222 2233332


Q ss_pred             hCCHHHHHHHHccC-----CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088          269 AGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       269 ~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~  343 (431)
                        +++.|+.+...+     ...++...+++++.....-. ...+.+.  .++..|++.+...++.++..|+.++..++..
T Consensus       522 --vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~-~h~~~L~--~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~  596 (1073)
T 3gjx_A          522 --VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLR-AHWKFLK--TVVNKLFEFMHETHDGVQDMACDTFIKIAQK  596 (1073)
T ss_dssp             --HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHH-HCHHHHH--HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             --HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHH-hCHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence              677777777654     23456667788888754311 1122222  2678888888888999999999999999988


Q ss_pred             hhhh
Q 014088          344 GEAE  347 (431)
Q Consensus       344 ~~~~  347 (431)
                      +...
T Consensus       597 C~~~  600 (1073)
T 3gjx_A          597 CRRH  600 (1073)
T ss_dssp             TGGG
T ss_pred             HHHH
Confidence            8764

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.69  E-value=0.003  Score=65.68  Aligned_cols=342  Identities=12%  Similarity=0.072  Sum_probs=183.6

Q ss_pred             CChHHHHHHHHHHHHHcCCChHhHHHH-HhCC----ChHHHHHhhC-----CCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 014088           29 CFGAVQFEAAWALTNIASGTSENTRVV-IDHG----AVPIFVRLLS-----SPTDDVREQAVWALGNVAGDSPKCRDLVL   98 (431)
Q Consensus        29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~g----~i~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   98 (431)
                      .+.+..+.++.+|+.++.........+ -...    +++.+..+++     .+++.++..++++++..+..-..      
T Consensus       455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------  528 (980)
T 3ibv_A          455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------  528 (980)
T ss_dssp             HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------
T ss_pred             CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------
Confidence            346888999999999987543221111 0112    3444555544     57899999999999998854221      


Q ss_pred             HcCChHHHHHHhcc-----ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCC-----C------------
Q 014088           99 SNGALMPLLAQFNE-----HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-----D------------  156 (431)
Q Consensus        99 ~~~~i~~l~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-----~------------  156 (431)
                      ....+++++..+..     +++..++..|+.++.++++............++..+..+|...     +            
T Consensus       529 ~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~  608 (980)
T 3ibv_A          529 ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSI  608 (980)
T ss_dssp             CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHH
T ss_pred             CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhc
Confidence            22456666666544     5678899999999999998764333233344555555555521     1            


Q ss_pred             ----hHHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHH----HhcCCCCcc-----cHHHHHHHHhHhhcCChhh-
Q 014088          157 ----DEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLV----ELLRHPSPS-----VLIPALRTVGNIVTGDDMQ-  219 (431)
Q Consensus       157 ----~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~----~ll~~~~~~-----v~~~a~~~l~~l~~~~~~~-  219 (431)
                          .+-+.....+++.+...   +++.....++ .+++.++    ..+......     -....+.+++.++.+.+.. 
T Consensus       609 ~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~  687 (980)
T 3ibv_A          609 RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARG  687 (980)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC
T ss_pred             ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCccc
Confidence                12355566667666532   3333332332 3334433    334322111     1224567778887654221 


Q ss_pred             -----hHHHhhcCChHHHHHHhc--ccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHH
Q 014088          220 -----TQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAA  291 (431)
Q Consensus       220 -----~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~  291 (431)
                           ....+. .+.+.+...+.  .. +..+|..++.++.++...-....     ...+|.++..+-.. +..-....+
T Consensus       688 ~~~~p~~~~f~-~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~-----~p~lp~~i~~ll~~~~~~e~~~fL  760 (980)
T 3ibv_A          688 SEEVAWLASFN-KASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDM-----LPKVPQLISILLNSIDMNELVDVL  760 (980)
T ss_dssp             -CCCSHHHHHH-HHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHH-----TTTHHHHHHHHHHHCCTTTHHHHH
T ss_pred             CCCCcHHHHHH-HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhH-----HHHHHHHHHHHHhcCCHHHHHHHH
Confidence                 111111 34455555554  33 68899999999999987433322     23577777766533 344445667


Q ss_pred             HHHHHhcCCCCHHHHHHHHH--CCChHHHHhhcCCCC---------HHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHH
Q 014088          292 WAISNATSGGSNEQIKFLVS--QGCIKPLCDLLNCPD---------PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA  360 (431)
Q Consensus       292 ~aL~~l~~~~~~~~~~~l~~--~~~l~~L~~ll~~~~---------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~  360 (431)
                      +.++.+...-..+....+.+  .-++.++..++..+.         ..+++.-+..+..++.++-..             
T Consensus       761 ~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~-------------  827 (980)
T 3ibv_A          761 SFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGS-------------  827 (980)
T ss_dssp             HHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTG-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchh-------------
Confidence            77777765333232222211  124555666666432         224444445555555533111             


Q ss_pred             HHHHhh--c----cHHHHHHh-hcCCCHHHHHHHHHHHHHhcCC
Q 014088          361 QAIDDA--E----GLEKIENL-QSHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       361 ~~l~~~--~----~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~  397 (431)
                      ..+.+.  +    .+..+... ...+++..++.|..++.++...
T Consensus       828 v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~  871 (980)
T 3ibv_A          828 ILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSL  871 (980)
T ss_dssp             GGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC
T ss_pred             hhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence            011111  1    23334433 2347888899998888886554

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.67  E-value=0.022  Score=60.08  Aligned_cols=309  Identities=14%  Similarity=0.093  Sum_probs=164.6

Q ss_pred             HHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC---
Q 014088           62 PIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL---  137 (431)
Q Consensus        62 ~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~---  137 (431)
                      +.+...++. .+..++..++.++.+.....+.  ..+.....++.+.+.+.  .+++++..|+.+|..+........   
T Consensus       197 ~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~  272 (1049)
T 3m1i_C          197 KLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDL  272 (1049)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhh
Confidence            334444443 5678899999999887765442  23455555666663332  278899999999999987741111   


Q ss_pred             h-hhHhhhHHHHHHhh------------------cCCChHHHHHHHHHHHHhccC-------ChHHHHHHHHhCcHHHHH
Q 014088          138 F-EQTRPALPALERLI------------------HSNDDEVLTDACWALSYLSDG-------TNDKIQAVIEAGVCPRLV  191 (431)
Q Consensus       138 ~-~~~~~~i~~L~~lL------------------~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~L~  191 (431)
                      . ......++.++..+                  .+.+.+.....+..+..+...       .+.... .+ ..+++.++
T Consensus       273 ~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l-~~~l~~ll  350 (1049)
T 3m1i_C          273 IKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE-LL-LNAHQYLI  350 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH-HH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHH-HH-HHHHHHHH
Confidence            1 11112222222211                  122445555555555443321       111111 11 14566666


Q ss_pred             HhcCCCCcccHHHHHHHHhHhhc----CC--hhhhHHHhhcCChHHHHHHhcccc------------------h---hhH
Q 014088          192 ELLRHPSPSVLIPALRTVGNIVT----GD--DMQTQCIINHQALPCLLDLLTQNY------------------K---KSI  244 (431)
Q Consensus       192 ~ll~~~~~~v~~~a~~~l~~l~~----~~--~~~~~~~~~~~~l~~L~~lL~~~~------------------~---~~v  244 (431)
                      .+...++..+...++..+..++.    ..  .......+. .+++.++..+..+.                  +   ...
T Consensus       351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~  429 (1049)
T 3m1i_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL  429 (1049)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence            76677777888888887777765    11  111111211 23444444442210                  0   023


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc--CCHhHHHHHHHHHHHhcCCCCHHHHHH-HHHCCChHHHHhh
Q 014088          245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKF-LVSQGCIKPLCDL  321 (431)
Q Consensus       245 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~-l~~~~~l~~L~~l  321 (431)
                      ++.+..+|..++...+...-..    +.+.+-+.+..  .++..++.++++++.++.......... +.+  +++.+..+
T Consensus       430 ~~~~~~~L~~l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~--v~~~l~~l  503 (1049)
T 3m1i_C          430 YKSEREVLVYLTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT--VIKDLLDL  503 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHH--HHHHHHHH
Confidence            4455666666664222211111    23444445543  478899999999999987554332222 222  44444443


Q ss_pred             cCC-----CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          322 LNC-----PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       322 l~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      ...     +++-++..+++++.++...-...            ...+.  ..++.|...++++++.|+..|..++.++..
T Consensus       504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~------------~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~  569 (1049)
T 3m1i_C          504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAH------------WNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQ  569 (1049)
T ss_dssp             TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC------------HHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HhhhccccchHHHHHHHHHHHHHHHHHHHhH------------HHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            322     22334445778888766433221            11222  234556666778899999999999988776


Q ss_pred             C
Q 014088          397 E  397 (431)
Q Consensus       397 ~  397 (431)
                      .
T Consensus       570 ~  570 (1049)
T 3m1i_C          570 K  570 (1049)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.00098  Score=58.69  Aligned_cols=187  Identities=12%  Similarity=0.105  Sum_probs=126.1

Q ss_pred             HHHHhccccchhHHHHHHHHHHHhhcCCCCCC-----hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH----
Q 014088          106 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-----FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND----  176 (431)
Q Consensus       106 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----  176 (431)
                      +-..| .+.++..|..|+.-|..+....+...     ........+.+...+.+.+..++..++.++..++.....    
T Consensus        14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            55667 78899999999999988876542211     112345567777888999999999999999888753211    


Q ss_pred             -HHHHHHHhCcHHHHHHh-cCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHH
Q 014088          177 -KIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  254 (431)
Q Consensus       177 -~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  254 (431)
                       ......-..+++.++.- +.+....++..+..++..++...... .     .+++.+...+.+. ++.++..++..|.+
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K-npkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK-LPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence             11111222566777764 77888889999988888776543211 1     1245677778888 99999999988888


Q ss_pred             hhcC-CHH--HHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088          255 ITAG-NVN--QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       255 l~~~-~~~--~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      +... ...  .....+. .+++.+..++.+.+..||..|..++..+...-
T Consensus       166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            7641 010  0111112 24566788889999999999999999887654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.51  E-value=0.00089  Score=62.75  Aligned_cols=235  Identities=12%  Similarity=0.098  Sum_probs=153.9

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChH--hHHHHHhCCChHHHHHhh--CC--------CCHHHHHHHHHHHHHhcCCChH
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSE--NTRVVIDHGAVPIFVRLL--SS--------PTDDVREQAVWALGNVAGDSPK   92 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~lL--~~--------~~~~v~~~a~~~L~~l~~~~~~   92 (431)
                      |. ++..++|..|+.+|..+......  .+....+..+.-.++-.+  ..        .-..||+.|+.+|+.+ ..-+.
T Consensus       183 LF-dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~  260 (800)
T 3oc3_A          183 LL-SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIG  260 (800)
T ss_dssp             TT-CSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSC
T ss_pred             hc-CcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCCh
Confidence            44 45679999999999988652211  011001113333333333  11        1268899999999999 55443


Q ss_pred             HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014088           93 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  172 (431)
Q Consensus        93 ~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  172 (431)
                      .      ..++..++..+ ..+.++++.-++-.|.++ .+--.    ...++++.++..|++.+.+|+..|+.+|..++ 
T Consensus       261 e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DLL~----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-  327 (800)
T 3oc3_A          261 P------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEFVE----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-  327 (800)
T ss_dssp             S------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGGCC----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-
T ss_pred             h------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHHHH----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-
Confidence            1      23444455444 667899999999999999 22111    15788999999999999999999999999999 


Q ss_pred             CChHHHHHHHHhCcHHHHHHhcCC-CC-cccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHH
Q 014088          173 GTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW  250 (431)
Q Consensus       173 ~~~~~~~~~~~~~~i~~L~~ll~~-~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~  250 (431)
                       .++...     .++..+...|.+ ++ ..-....+..|+.|+..+..   .......+|.|...+.++ -..||..++.
T Consensus       328 -~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHt-ITSVR~AVL~  397 (800)
T 3oc3_A          328 -ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSP-VPEVRTSILN  397 (800)
T ss_dssp             -CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCS-SHHHHHHHHH
T ss_pred             -chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCC-cHHHHHHHHH
Confidence             333333     345666666654 22 23344567777777765531   112347899999999999 9999999999


Q ss_pred             HHHHhhcCCHHHHHHHHHhCCHHHHH-HHHccCCHhHHHHHHHHHH
Q 014088          251 TISNITAGNVNQIQAIIEAGIIGPLV-NLLLNAEFEIKKEAAWAIS  295 (431)
Q Consensus       251 ~L~nl~~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~v~~~a~~aL~  295 (431)
                      ++..+.  +...         +..+. .+|-.++.+++..+..+..
T Consensus       398 TL~tfL--~~~~---------LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          398 MVKNLS--EESI---------DFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HTTTCC--CHHH---------HHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHH--hhhH---------HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            998877  2222         22233 3445567888888877774

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.0033  Score=55.25  Aligned_cols=188  Identities=11%  Similarity=0.124  Sum_probs=124.5

Q ss_pred             HHHhcCCCCcccHHHHHHHHhHhhcCChhhh--HHHh--hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC------
Q 014088          190 LVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------  259 (431)
Q Consensus       190 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~--~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------  259 (431)
                      +-.-|.+.++..|..++..+..+........  ....  -....+.+.+.+.+. +..+...++.++..++...      
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            5577889999999999999988776543211  1111  123456677788888 9999999999999887521      


Q ss_pred             HHHHHHHHHhCCHHHHHHH-HccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088          260 VNQIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  338 (431)
Q Consensus       260 ~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~  338 (431)
                      .......+ ..+++.|+.= +.+....++..+..++..++....+.  .     .+++.+...++.+++.++..++..|.
T Consensus        93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~-----~~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--T-----QSVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--H-----HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--H-----HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            11111222 2356767754 66778889999998888876543210  0     13566777888999999999999999


Q ss_pred             HHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          339 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       339 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      +++.......       .+ ....+.  ..++.+..++++.+++||..|..++-.++.
T Consensus       165 ~~l~~fg~~~-------~~-~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          165 ELMAAFGLTN-------VN-VQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHTTTT-------CC-HHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCc-------CC-chhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            9987643211       00 111121  234457778899999999999998866543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.40  E-value=0.004  Score=53.61  Aligned_cols=179  Identities=15%  Similarity=0.072  Sum_probs=121.9

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHhh----cCC
Q 014088           61 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC----RGK  133 (431)
Q Consensus        61 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~----~~~  133 (431)
                      =+.+...|-+.+..-+..++..|.......+.   .+..  .+..+++.+.   .+++..+...++.+|..+.    ...
T Consensus        48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~  122 (266)
T 2of3_A           48 KVSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTE  122 (266)
T ss_dssp             CHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            34555556666777777777777765543332   2221  3333444331   3567888888887777764    322


Q ss_pred             CCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhh
Q 014088          134 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  213 (431)
Q Consensus       134 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~  213 (431)
                      ..........++|.|+.-+.++...+|..+-.++..+....+..       .+++.+..-+.+.++.++..++..+..+.
T Consensus       123 y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li  195 (266)
T 2of3_A          123 TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYI  195 (266)
T ss_dssp             CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            22233334678999999999999999998888887665422211       35577888888899999999999999987


Q ss_pred             cCChhhhHHHhhcCCh---HHHHHHhcccchhhHHHHHHHHHHHhhc
Q 014088          214 TGDDMQTQCIINHQAL---PCLLDLLTQNYKKSIKKEACWTISNITA  257 (431)
Q Consensus       214 ~~~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~  257 (431)
                      ......     ....+   +.+.+++.++ +..||..|..++..+-.
T Consensus       196 ~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          196 TNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             HhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            543322     23567   9999999998 99999999999887654

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.37  E-value=0.011  Score=51.79  Aligned_cols=309  Identities=18%  Similarity=0.165  Sum_probs=177.8

Q ss_pred             HHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHH
Q 014088           41 LTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR  120 (431)
Q Consensus        41 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~  120 (431)
                      |.++..+.+...+.++..+++..+....+=++.++.+.....|...+....-+.  .--...++.++..+..+++.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhccCCCcceEE
Confidence            445566688889999999999999999999999999999999998875432211  111235788888888888999999


Q ss_pred             HHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCC-------ChHHHHH-------HHHHHHHhcc------C------
Q 014088          121 NATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN-------DDEVLTD-------ACWALSYLSD------G------  173 (431)
Q Consensus       121 ~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~-------~~~v~~~-------a~~~L~~l~~------~------  173 (431)
                      .....|+|...+. +........+.++.|...+...       +..-+..       +++++.|...      +      
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            9999999999886 4445555578888888766421       2333344       4444444321      1      


Q ss_pred             ChHHHH---HHHHhCcHHHHHHhcCCCCc------ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchh--
Q 014088          174 TNDKIQ---AVIEAGVCPRLVELLRHPSP------SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK--  242 (431)
Q Consensus       174 ~~~~~~---~~~~~~~i~~L~~ll~~~~~------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~--  242 (431)
                      .+...+   .+++.+++..|+..|+-+.-      +.|...++.+--+.+... .-+        +.++....+....  
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~-~Pk--------d~~l~VtDd~rk~NL  494 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPF-VPK--------DGVLNVIDENRKENL  494 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTT-SCC--------TTGGGCCCTTTCCCH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCC-Cch--------hhhccccchhhhhhh
Confidence            111112   24444677788888765432      334455554444433221 000        0112222221112  


Q ss_pred             --hHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHH
Q 014088          243 --SIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC  319 (431)
Q Consensus       243 --~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~  319 (431)
                        .+...-+|+.+.=.. ...+.++.+++. .+..|+.+++.-..+.+  ++..+..                  +..=.
T Consensus       495 vGHIciA~sWa~~Q~tNertqdTkqQLiER-~fSLL~~LmEQc~~E~q--VAh~~Ys------------------IsCPL  553 (619)
T 3c2g_A          495 IGHICAAYSWVFRQPNNTRTQSTKQQLVER-TISLLLVLMEQCGAEKE--VAQYSYS------------------IDCPL  553 (619)
T ss_dssp             HHHHHHHHHHHHHSCCCTTTHHHHHHHHHH-HHHHHHHHHHHTTCHHH--HHHTTTT------------------SCCGG
T ss_pred             HHHHHHHHHHhhcCccccchhhHHHHHHHH-HHHHHHHHHHHhhhHHH--HHhheee------------------ccCch
Confidence              223333444443332 235566666664 55666666644311111  1111111                  22223


Q ss_pred             hhcCCC--CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088          320 DLLNCP--DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       320 ~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  395 (431)
                      ++++..  .|.....++..--++++.+.-...             .. .---..++-+.+|.|+++.+.|..+|.++-
T Consensus       554 nlLn~nQ~KP~FI~NVL~VcDKILeHcP~~Ad-------------~W-~i~r~tle~l~NHsNsDIa~aasSLL~rfP  617 (619)
T 3c2g_A          554 NLLNGNQVKPTFIHNVLVVCDKILEHCPTRAD-------------IW-TIDRPMLEGLTNHRNSDIAKAANSLLSRFP  617 (619)
T ss_dssp             GGGSSCCCCHHHHHHHHHHHHHHHHHCTTHHH-------------HS-CCCHHHHHHHHTCSSHHHHHHHHHHHTTSC
T ss_pred             hhhcccccChHHHHHHHHHHHHHHHhCcchhc-------------cc-eechHHHHHHhcCCCchHHHHHHHHHHhCC
Confidence            566544  455556666666666666543211             11 112344667789999999999999988764

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.36  E-value=0.014  Score=51.47  Aligned_cols=213  Identities=12%  Similarity=0.116  Sum_probs=152.3

Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChH----HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH
Q 014088           53 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK----CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  128 (431)
Q Consensus        53 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  128 (431)
                      +.+...+.+..|+..|..-+-+.|..+..++.++.+....    ..+.+..  -...+..++..-.++++.-.+-..|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence            4455679999999999998999999999999999765422    2233332  234444444334467777778888888


Q ss_pred             hhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCCcccHHHH
Q 014088          129 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPA  205 (431)
Q Consensus       129 l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a  205 (431)
                      ..++..........+.+-.+.+.++.++-++...|..++..+..........+...   .++.....++.+++.-+++.+
T Consensus       150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS  229 (341)
T 1upk_A          150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS  229 (341)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence            88775444444455666678888899999999999999998876655444444443   467778889999999999999


Q ss_pred             HHHHhHhhcCCh--hhhHHHh-hcCChHHHHHHhcccchhhHHHHHHHHHHHhhc---CCHHHHHHHHH
Q 014088          206 LRTVGNIVTGDD--MQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQIQAIIE  268 (431)
Q Consensus       206 ~~~l~~l~~~~~--~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~  268 (431)
                      +..|+.+.....  ......+ +..-+..++.+|++. ...++.+|.-++--+..   .++.....++.
T Consensus       230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~  297 (341)
T 1upk_A          230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLK  297 (341)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHH
Confidence            999999986533  2222222 445688999999999 89999999988887765   23444444443

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.35  E-value=0.0016  Score=56.00  Aligned_cols=183  Identities=13%  Similarity=0.052  Sum_probs=120.2

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh---hhHHH
Q 014088          147 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCI  223 (431)
Q Consensus       147 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~  223 (431)
                      .+...+-+.|..-+..++..|.......+.......+ .+++.+.-.+.+.+..+...++.++..+...-..   .....
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            4455566677777777777777655443322211111 1233333334467788888888888776421100   00000


Q ss_pred             hhcCChHHHHHHhcccchhhHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC
Q 014088          224 INHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  302 (431)
Q Consensus       224 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  302 (431)
                      --.-++|.|++-+-++ .+.+|..+-.++..++. ..+.        .+++.+++-+.+.++++|.+++..+..+....+
T Consensus       129 ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            1124679999999888 88899988877776654 2222        256667777888899999999999999975432


Q ss_pred             HHHHHHHHHCCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 014088          303 NEQIKFLVSQGCI---KPLCDLLNCPDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       303 ~~~~~~l~~~~~l---~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  345 (431)
                      ..      ....+   +.+..++.++|..++..|+.++..+....+
T Consensus       200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G  239 (266)
T 2of3_A          200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG  239 (266)
T ss_dssp             SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence            12      23467   999999999999999999999998876543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.32  E-value=0.057  Score=45.47  Aligned_cols=188  Identities=12%  Similarity=0.128  Sum_probs=125.1

Q ss_pred             ChHHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHH----h---cCCCCc-----ccHHHHHHHHhHhhcCChhhhHH
Q 014088          156 DDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVE----L---LRHPSP-----SVLIPALRTVGNIVTGDDMQTQC  222 (431)
Q Consensus       156 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~----l---l~~~~~-----~v~~~a~~~l~~l~~~~~~~~~~  222 (431)
                      +++.|+.|+.-|+.--+..++-...+-. .|.+..+++    .   +..+.-     .-..+++..+..++.+ ++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence            4556777776666544433333332222 254444432    2   222221     1124455566666664 456677


Q ss_pred             HhhcCChHHHHHHhccc----chhhHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          223 IINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       223 ~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                      ++++.+.-.|...|+..    +-+.+|..++.+++.+.. .+++.+..+.+.+++|..++.++.++.--|.-|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            88888887888888544    147889999999999997 6789999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHH--------CCChHHHHh-hcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          298 TSGGSNEQIKFLVS--------QGCIKPLCD-LLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       298 ~~~~~~~~~~~l~~--------~~~l~~L~~-ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                      ....  ....++..        ..++..++. +.+.+++.+.++++++-.++..+...
T Consensus       173 L~dd--~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra  228 (268)
T 2fv2_A          173 LLDD--TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA  228 (268)
T ss_dssp             HHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             hccc--hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence            8643  33333322        123444443 33567888888888888888766554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.31  E-value=0.00014  Score=62.31  Aligned_cols=44  Identities=14%  Similarity=0.111  Sum_probs=27.2

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW   81 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~   81 (431)
                      .++.-|..++++.+|..++..+.                  ...+..+++++++.+|..++.
T Consensus        53 ~l~~~ll~d~~~~VR~~AA~~l~------------------~~~l~~L~~D~~~~VR~~aA~   96 (244)
T 1lrv_A           53 HLAVQYLADPFWERRAIAVRYSP------------------VEALTPLIRDSDEVVRRAVAY   96 (244)
T ss_dssp             GGGGGGTTCSSHHHHHHHHTTSC------------------GGGGGGGTTCSSHHHHHHHHT
T ss_pred             HHHHHHhcCCCHHHHHHHHHhCC------------------HHHHHHHccCcCHHHHHHHHH
Confidence            34445667888899998887431                  223455556666666666554

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.27  E-value=0.051  Score=56.74  Aligned_cols=142  Identities=12%  Similarity=0.091  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC---CHhHHHHHHHHHHHhcCCC-------CHHHHHHHHH
Q 014088          242 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATSGG-------SNEQIKFLVS  311 (431)
Q Consensus       242 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~  311 (431)
                      +.+..-....+..+.....+....+.+. ++..-+++++.+   .|+.|..-...+..+..++       ++.+.+.   
T Consensus       800 ~evL~l~s~iv~k~~~~~~~~~~~il~~-vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~---  875 (1073)
T 3gjx_A          800 PEVLSTMAIIVNKLGGHITAEIPQIFDA-VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKL---  875 (1073)
T ss_dssp             THHHHHHHHHHHHHGGGTGGGHHHHHHH-HHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHH---
Confidence            4444444444444443333334444443 555566677644   6788877777777665443       2333333   


Q ss_pred             CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHH----hhcCCCHHHHHHH
Q 014088          312 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN----LQSHDNTEIYEKA  387 (431)
Q Consensus       312 ~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~----l~~~~~~~v~~~a  387 (431)
                        +++.++-.++..++++...++.++..++.......+         +...+-+.-+...+.+    +.........+.-
T Consensus       876 --~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~---------~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q  944 (1073)
T 3gjx_A          876 --VLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEA---------AAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMH  944 (1073)
T ss_dssp             --HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHH
T ss_pred             --HHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChH---------HHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHH
Confidence              466667777889999999999999999876543211         3333444444444333    3445555555555


Q ss_pred             HHHHHHhcCCC
Q 014088          388 VKILETYWVEE  398 (431)
Q Consensus       388 ~~~l~~~~~~e  398 (431)
                      ..+|..+|.--
T Consensus       945 ~~il~~l~~~~  955 (1073)
T 3gjx_A          945 ASILAYMFNLV  955 (1073)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.24  E-value=0.00065  Score=63.62  Aligned_cols=246  Identities=15%  Similarity=0.114  Sum_probs=153.1

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc--CChHHHHHHhc---------cccchhHHHHHHHHHHH
Q 014088           60 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN--GALMPLLAQFN---------EHAKLSMLRNATWTLSN  128 (431)
Q Consensus        60 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--~~i~~l~~~l~---------~~~~~~~~~~a~~~L~~  128 (431)
                      +.+.|+.-|-++.+++|..|+.+|..+.+............  ...-.++-.+.         ..--.++|+.|+.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            45677777778999999999999999864221100000001  12222333331         11235799999999999


Q ss_pred             hhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHH
Q 014088          129 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  208 (431)
Q Consensus       129 l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~  208 (431)
                      + .+-+..     ..++..++..+..+..+++..++-.|.++..--..      -.++++.++..|.+.+.+|+..|+.+
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~------Ld~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED------KDGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC------HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH------HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence            9 554443     24455555566778899999999999998211111      12667888888999999999999999


Q ss_pred             HhHhhcCChhhhHHHhhcCChHHHHHHhcccch-hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHH
Q 014088          209 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  287 (431)
Q Consensus       209 l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  287 (431)
                      |.-++  .+....     .++..+...|.+-.+ ..-.......|+.++.....   .......+|.|..++.+.-+.||
T Consensus       323 LiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR  392 (800)
T 3oc3_A          323 LCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR  392 (800)
T ss_dssp             HTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred             hhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence            99988  222222     233444444433201 12233444555565543211   01113578999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088          288 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  338 (431)
Q Consensus       288 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~  338 (431)
                      ..++.++..+.   .....+.+.+        +++-.++.+++..+..+..
T Consensus       393 ~AVL~TL~tfL---~~~~LRLIFQ--------NILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          393 TSILNMVKNLS---EESIDFLVAE--------VVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHTTTCC---CHHHHHHHHH--------HHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---hhhHHHHHHH--------HHHhCCcHHHHHHHHHHHH
Confidence            99999999887   2233333222        4555678888877776653

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.21  E-value=0.038  Score=48.69  Aligned_cols=200  Identities=15%  Similarity=0.079  Sum_probs=142.1

Q ss_pred             HHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChh----hhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHH
Q 014088          179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  254 (431)
Q Consensus       179 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  254 (431)
                      +.+...+++..|+..|..-+.+.|..+..++.++.+....    ....+.+  -.+.+..++..-.++++...+...|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence            3456668889999999988889999999999998875432    2222222  122233333222245666666667777


Q ss_pred             hhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHC---CChHHHHhhcCCCCHHHHH
Q 014088          255 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ---GCIKPLCDLLNCPDPRIVT  331 (431)
Q Consensus       255 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~~  331 (431)
                      ++.+ +.....++..+.+..+.+.++.++.++...|..++..+...+. .....++..   .+......++.+++.-++.
T Consensus       150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk-~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR  227 (341)
T 1upk_A          150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK-LLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  227 (341)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH-HHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence            7776 7778888888888899999999999999999999999987654 333344433   3466777889999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 014088          332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL  391 (431)
Q Consensus       332 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l  391 (431)
                      .++..|+.++-.......         ....+.+..-+..+..|+.+++..++-.|=.+.
T Consensus       228 QSlKLLgelLldr~N~~v---------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVF  278 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFTI---------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVF  278 (341)
T ss_dssp             HHHHHHHHHHHSGGGHHH---------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchHHHH---------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhhe
Confidence            999999999976554432         345566666777788888888877765554443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.00  E-value=0.044  Score=46.15  Aligned_cols=101  Identities=17%  Similarity=0.073  Sum_probs=84.9

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCC-----HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc
Q 014088          248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-----FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL  322 (431)
Q Consensus       248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll  322 (431)
                      |+..+..++.+ ++.+..+++.++.-.|..+++..+     ..+|-.++.+++.+....+++....+.+.++++...+.+
T Consensus        76 aLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim  154 (268)
T 2fv2_A           76 ALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM  154 (268)
T ss_dssp             HHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence            33444455555 888999999999888888887652     568899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 014088          323 NCPDPRIVTVCLEGLENILKAGEAEKN  349 (431)
Q Consensus       323 ~~~~~~v~~~al~~L~~l~~~~~~~~~  349 (431)
                      +.++.-.+..|..++.+++..+...+-
T Consensus       155 e~GselSKtvAtfIlqKIL~dd~GL~Y  181 (268)
T 2fv2_A          155 ESGSELSKTVATFILQKILLDDTGLAY  181 (268)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHhccchhHHH
Confidence            999999999999999999987776554

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.91  E-value=0.025  Score=52.31  Aligned_cols=248  Identities=14%  Similarity=0.068  Sum_probs=147.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHH
Q 014088           71 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER  150 (431)
Q Consensus        71 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~  150 (431)
                      ++...++.|+..+.....+-|..++.     ++..++.+. .+.+..+|..|...|..+|++      .....+...|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            57889999999999999888876655     577899999 788999999999999999987      336788899999


Q ss_pred             hhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC-ChhhhHHHhhcCCh
Q 014088          151 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQAL  229 (431)
Q Consensus       151 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l  229 (431)
                      +|+..++.-...+-++|..+...++..        .+..+...+..+++.+|..++..|..-... .......-++.-++
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~  179 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL  179 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence            999998888888888888777666532        223333333335678888888888554322 11111122222345


Q ss_pred             HHHHHHhcccchhhHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHc------cCCHhHHHH----HHHHHHHhc
Q 014088          230 PCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLL------NAEFEIKKE----AAWAISNAT  298 (431)
Q Consensus       230 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~------~~~~~v~~~----a~~aL~~l~  298 (431)
                      ..+.+.|++- ...--.-....|..+-. .+....+.+++     .+.+...      ..|.+....    +-.|+--++
T Consensus       180 ~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv~-----ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS  253 (507)
T 3u0r_A          180 TESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLVE-----LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS  253 (507)
T ss_dssp             HHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHHH-----HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred             HHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHHH-----HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence            5566666554 33333344445554443 33444444432     2333221      123333322    333333333


Q ss_pred             CCC-CHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhh
Q 014088          299 SGG-SNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       299 ~~~-~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~  345 (431)
                      ... +.....++.+ .+++.+-.+-.. ...+.+...+.++.-++..+.
T Consensus       254 ~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          254 KNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             TTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             cCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence            222 3345555444 366655444332 122355566677766666554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.77  E-value=0.00083  Score=57.42  Aligned_cols=17  Identities=29%  Similarity=0.253  Sum_probs=13.3

Q ss_pred             HhhCCCCHHHHHHHHHH
Q 014088           66 RLLSSPTDDVREQAVWA   82 (431)
Q Consensus        66 ~lL~~~~~~v~~~a~~~   82 (431)
                      .++.++++.+|..++..
T Consensus        57 ~ll~d~~~~VR~~AA~~   73 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRY   73 (244)
T ss_dssp             GGTTCSSHHHHHHHHTT
T ss_pred             HHhcCCCHHHHHHHHHh
Confidence            45678899999988864

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.75  E-value=0.038  Score=46.16  Aligned_cols=141  Identities=16%  Similarity=0.084  Sum_probs=103.3

Q ss_pred             HhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcC-CChHHHHHHHH
Q 014088           22 FHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG-DSPKCRDLVLS   99 (431)
Q Consensus        22 v~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~   99 (431)
                      .+.|..++..++|..|+..|+.. ...         ...++.+.. +-.+++..|++.+..++..++. ..++       
T Consensus        76 a~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-------  138 (240)
T 3l9t_A           76 AFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-------  138 (240)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-------
T ss_pred             HHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-------
Confidence            33466677779999999988877 311         125666766 5566899999999999999884 3332       


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088          100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ  179 (431)
Q Consensus       100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  179 (431)
                       ..++.+.... .+++..+|+.|...+.--+.. + ........++|.+-.+..+++.-|++.+.+.|..+++.+|+...
T Consensus       139 -~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~  214 (240)
T 3l9t_A          139 -KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK  214 (240)
T ss_dssp             -TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             -HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence             1455666666 888999999999877544433 1 12233356888888888899999999999999999999987766


Q ss_pred             HHHH
Q 014088          180 AVIE  183 (431)
Q Consensus       180 ~~~~  183 (431)
                      .+++
T Consensus       215 ~~~~  218 (240)
T 3l9t_A          215 IELK  218 (240)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.29  E-value=0.33  Score=44.95  Aligned_cols=123  Identities=18%  Similarity=0.177  Sum_probs=91.7

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 014088          113 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  192 (431)
Q Consensus       113 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  192 (431)
                      ..+...++.|+..+.....+.|.    .....+..++.+.++.+..||..|+..|-.+|.+  +...     .+...|.+
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Q  107 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQ  107 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHH
Confidence            34688899999999998877542    2356788899999999999999999999999987  3333     45678999


Q ss_pred             hcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh
Q 014088          193 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  255 (431)
Q Consensus       193 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  255 (431)
                      +|+.+++.-...+-.+|..+...++.        +.+..+...+..+ ++.+|..++..|..=
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~-~e~~Rer~lkFi~~k  161 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG-EDIVRERAIKFLSTK  161 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc-chHHHHHHHHHHHHH
Confidence            99988877676676777666654442        2344555555556 788899888887643

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.01  E-value=0.42  Score=42.05  Aligned_cols=162  Identities=13%  Similarity=0.060  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHcCCChHhHHHHHhCC----ChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHH
Q 014088           31 GAVQFEAAWALTNIASGTSENTRVVIDHG----AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMP  105 (431)
Q Consensus        31 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g----~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~  105 (431)
                      .+.+.-++..+.-.+. .+.....+.+..    ++..+...+.+ ..+..+..++++++|+..... .+..+..  ....
T Consensus       116 ~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-g~~~l~~--~~~~  191 (304)
T 3ebb_A          116 EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-GQKLMMS--QRES  191 (304)
T ss_dssp             TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-HHHHHHH--THHH
T ss_pred             HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-hHHHHHH--HHHH
Confidence            3445555555555554 455555554432    22233444443 456678999999999987655 4555554  2344


Q ss_pred             HHHHhc---cccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHH
Q 014088          106 LLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQA  180 (431)
Q Consensus       106 l~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~  180 (431)
                      ++..+.   .+.+..++..++.++.|++... ..........++..+..+++ ..+.|....++.+|+++...++...+.
T Consensus       192 il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~l  271 (304)
T 3ebb_A          192 LMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQL  271 (304)
T ss_dssp             HHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHH
Confidence            444432   3457889999999999998653 11222233445566666665 458899999999999999876554443


Q ss_pred             HHHhCcHHHHHHhcCC
Q 014088          181 VIEAGVCPRLVELLRH  196 (431)
Q Consensus       181 ~~~~~~i~~L~~ll~~  196 (431)
                      ....++-..+-.+...
T Consensus       272 ak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          272 AKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHTTHHHHGGGGGGC
T ss_pred             HHHcCHHHHHHHHHhC
Confidence            3333444444444443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.96  E-value=0.12  Score=43.11  Aligned_cols=143  Identities=10%  Similarity=0.036  Sum_probs=101.5

Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHH-hhcCCChHHHHHHHHHHHHhcc-CChHHHHHHH
Q 014088          105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSD-GTNDKIQAVI  182 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~  182 (431)
                      .+...|-+++..++|..|+.+|..+ .        .....++.+.. +..+.+-.|+..+..++..++. ..++      
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence            3444454666678999999988877 2        11457777777 5667789999999999998874 3332      


Q ss_pred             HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH
Q 014088          183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ  262 (431)
Q Consensus       183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  262 (431)
                        ..++.+.....+++..+|+.|.......+.... ..  .-...+++.+-.+..++ +.-||+...|.|..++..+|+.
T Consensus       139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~-~k--~dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY-FK--ENPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT-TT--TCHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch-hh--cCHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence              256778888999999999999888765443211 00  00112355555566666 8999999999999999998997


Q ss_pred             HHHHHH
Q 014088          263 IQAIIE  268 (431)
Q Consensus       263 ~~~l~~  268 (431)
                      ...+++
T Consensus       213 V~~~~~  218 (240)
T 3l9t_A          213 VKIELK  218 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766655

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.92  E-value=0.099  Score=44.30  Aligned_cols=141  Identities=15%  Similarity=0.094  Sum_probs=97.3

Q ss_pred             hhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC----HH-HHH------H
Q 014088          241 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS----NE-QIK------F  308 (431)
Q Consensus       241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----~~-~~~------~  308 (431)
                      +......++.+|..+... ......++. .+.+..+...+.++++.++..++..|..++....    .+ ...      .
T Consensus        67 ~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~  145 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  145 (233)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence            456677888888888654 555666665 5678888888888899999999998888876543    11 111      1


Q ss_pred             HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 014088          309 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  387 (431)
Q Consensus       309 l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a  387 (431)
                      ..+..-...+++.++ ..+.+.+..++..+..++...+..+.      .-..+..+...|..+.+..+...+++++..+.
T Consensus       146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~------R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi  219 (233)
T 2f31_A          146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQL  219 (233)
T ss_dssp             HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred             hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH------HHHHHHHHHHCChHHHHHHHhccCCHHHHHHH
Confidence            122345667888776 45667777777777777766544321      12256778889999999999888888886654


Q ss_pred             H
Q 014088          388 V  388 (431)
Q Consensus       388 ~  388 (431)
                      .
T Consensus       220 ~  220 (233)
T 2f31_A          220 C  220 (233)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.79  E-value=0.94  Score=47.57  Aligned_cols=172  Identities=13%  Similarity=0.119  Sum_probs=109.6

Q ss_pred             hHHHHHHhcc---ccchhHHHHHHHHHHHhhc----CCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014088          103 LMPLLAQFNE---HAKLSMLRNATWTLSNFCR----GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  175 (431)
Q Consensus       103 i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  175 (431)
                      +..+..++..   ..++.++..+.-+++.|..    ..+.........+...+.+.+...+.+-+..++.+|+|+...  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            3344455532   2355666767666666654    332222233455666677777778888889999999999752  


Q ss_pred             HHHHHHHHhCcHHHHHHhcCC-----C--CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHH
Q 014088          176 DKIQAVIEAGVCPRLVELLRH-----P--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKE  247 (431)
Q Consensus       176 ~~~~~~~~~~~i~~L~~ll~~-----~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~  247 (431)
                               ..++.+..++..     .  ...++..|+++|.+++...+...+        +.+++++.+. .+.++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence                     234566666642     1  234677899999999865543333        5577777322 27899999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc-CCHhHHHHHHHHHHHhcCCCCH
Q 014088          248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN  303 (431)
Q Consensus       248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~  303 (431)
                      |+..|....-. ..         .+..+...+.. ++..|..-....|.+++....+
T Consensus       534 A~~~Lm~t~P~-~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          534 SCIVFFESKPS-VA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHTCCC-HH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHCcC-HH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            98887644322 22         24456666665 4888888888899998887654

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.61  E-value=1.1  Score=39.44  Aligned_cols=185  Identities=16%  Similarity=0.126  Sum_probs=110.6

Q ss_pred             HHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcC----ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHH
Q 014088          188 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  263 (431)
Q Consensus       188 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  263 (431)
                      ..+.+++ .-..+.+-.++..++-++... .....+.+.+    ++..+...+.....+..+.-++++++|+..+ +..+
T Consensus       106 ~~l~kil-~WP~~~~fPvLDLlRl~~l~p-~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~  182 (304)
T 3ebb_A          106 QILWKAI-NCPEDIVFPALDILRLSIKHP-SVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQ  182 (304)
T ss_dssp             HHHHHHH-TSCTTTCHHHHHHHHHHTTSH-HHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHH
T ss_pred             HHHHHHH-cCCHHhHHHHHHHHHHHHcCc-cHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhH
Confidence            4455554 445566777777777665532 2222222222    2223344444332456789999999999887 5555


Q ss_pred             HHHHHh--CCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC----CHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHH
Q 014088          264 QAIIEA--GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG----SNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEG  336 (431)
Q Consensus       264 ~~l~~~--~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~~  336 (431)
                      +.+...  .+++.+...+...+..++..+...+.|++...    ..+....     ++..+..+++ ..+.+....++-+
T Consensus       183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~~il~~~~d~EalyR~LvA  257 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLISTILEVVQDLEATFRLLVA  257 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHHHHHhccCCHHHHHHHHHH
Confidence            555542  23444444444557889999999999987631    1122111     2333444443 4588999999999


Q ss_pred             HHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 014088          337 LENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE  392 (431)
Q Consensus       337 L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~  392 (431)
                      |++++..+..            .....+..|....+..+... ..+.|.+-+..+++
T Consensus       258 LGtL~~~~~~------------~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~  302 (304)
T 3ebb_A          258 LGTLISDDSN------------AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN  302 (304)
T ss_dssp             HHHHHTTCHH------------HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred             HHHHHhCChh------------HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            9999965432            35555566666667766543 56778777776664

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.23  E-value=0.29  Score=43.15  Aligned_cols=173  Identities=15%  Similarity=0.197  Sum_probs=120.5

Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHH
Q 014088          168 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  247 (431)
Q Consensus       168 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~  247 (431)
                      .++..++.+.+.-+++.+++..+...++.++.++.+..++.+...+....-..  .--...+|.++..+.-..++++...
T Consensus       267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhccCCCcceEEe
Confidence            45666777888889999999999999999999999999999988875432111  1112567888888865548999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC-------CHh-------HHHHHHHHHHHhcC------CC------
Q 014088          248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-------EFE-------IKKEAAWAISNATS------GG------  301 (431)
Q Consensus       248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~-------v~~~a~~aL~~l~~------~~------  301 (431)
                      ....|+|...+........+..|.++.|...+...       +..       +..++++++.|+..      ++      
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G  424 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG  424 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence            99999999998888888888899999999887542       222       33444555555533      11      


Q ss_pred             --CHHHHHHHHHCCChHHHHhhcCCCC---H---HHHHHHHHHHHHHHH
Q 014088          302 --SNEQIKFLVSQGCIKPLCDLLNCPD---P---RIVTVCLEGLENILK  342 (431)
Q Consensus       302 --~~~~~~~l~~~~~l~~L~~ll~~~~---~---~v~~~al~~L~~l~~  342 (431)
                        +..+...+++.++++.|..+++-+.   +   +++...+..+.-+++
T Consensus       425 ~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR  473 (619)
T 3c2g_A          425 PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR  473 (619)
T ss_dssp             HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence              1234445566678888988887432   2   445544544444433

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.04  E-value=0.7  Score=49.36  Aligned_cols=286  Identities=11%  Similarity=0.079  Sum_probs=158.6

Q ss_pred             CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhcCC-----ChHHHHHHHHcC
Q 014088           29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGD-----SPKCRDLVLSNG  101 (431)
Q Consensus        29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~~  101 (431)
                      .+++.|.+|-..|..+-...          .....+...|  .+.+..+|..|+.+|.+....     +++.+..+.+  
T Consensus        25 ~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~--   92 (1204)
T 3a6p_A           25 STQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN--   92 (1204)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH--
T ss_pred             CChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--
Confidence            35677888887777764311          2344444433  346789999999999887632     3333333332  


Q ss_pred             ChHHHHHHhccc------cchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC-
Q 014088          102 ALMPLLAQFNEH------AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-  173 (431)
Q Consensus       102 ~i~~l~~~l~~~------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-  173 (431)
                         .++..+.+.      .+..++...+.++..++... +.    ....+++.++.++++ ++..+..++.+|..++.. 
T Consensus        93 ---~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev  164 (1204)
T 3a6p_A           93 ---SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDV  164 (1204)
T ss_dssp             ---HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence               344444222      45778888999999998774 31    235688888888876 555677788888777532 


Q ss_pred             ------ChHHHHH---HHHh---CcHHHHHHhcCC-------------------CCcccHHHHHHHHhHhhcCChhhhHH
Q 014088          174 ------TNDKIQA---VIEA---GVCPRLVELLRH-------------------PSPSVLIPALRTVGNIVTGDDMQTQC  222 (431)
Q Consensus       174 ------~~~~~~~---~~~~---~~i~~L~~ll~~-------------------~~~~v~~~a~~~l~~l~~~~~~~~~~  222 (431)
                            ...+...   .+..   .+++.+..++..                   .+..++..++.++.++...-+.  ..
T Consensus       165 ~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~  242 (1204)
T 3a6p_A          165 VTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SH  242 (1204)
T ss_dssp             HTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HH
Confidence                  1111111   1111   122233333322                   1234666777888776654331  22


Q ss_pred             HhhcC--ChHHHHHHhcccchhhHHHHHHHHHHHhhcCC--HHHHHHHHHh---CCHHHHHHHHc--------cCCHhHH
Q 014088          223 IINHQ--ALPCLLDLLTQNYKKSIKKEACWTISNITAGN--VNQIQAIIEA---GIIGPLVNLLL--------NAEFEIK  287 (431)
Q Consensus       223 ~~~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~i~~L~~ll~--------~~~~~v~  287 (431)
                      +.+..  .++.+...+.   ++++|..|+.+|..++...  ++....++..   ..+..++..+.        ..+.++.
T Consensus       243 i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~  319 (1204)
T 3a6p_A          243 ITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFL  319 (1204)
T ss_dssp             HHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHH
T ss_pred             HHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHH
Confidence            23322  6666666554   4678999999999999732  4433333321   11334555442        1145666


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHH----------CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088          288 KEAAWAISNATSGGSNEQIKFLVS----------QGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       288 ~~a~~aL~~l~~~~~~~~~~~l~~----------~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~  343 (431)
                      +..+..+..+..    .....+.+          .++++.+..++..++..+...++..-..+++.
T Consensus       320 k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          320 KRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            677777766652    11111110          12366666666666666666666554445443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.96  E-value=0.23  Score=45.45  Aligned_cols=154  Identities=18%  Similarity=0.166  Sum_probs=104.8

Q ss_pred             cCChHHHHHHhcc----------cchhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHH
Q 014088          226 HQALPCLLDLLTQ----------NYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAI  294 (431)
Q Consensus       226 ~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL  294 (431)
                      .+++..|+++|..          ..+......++.+|..+... ......++. ...+..+...+.+..+.++..|+..|
T Consensus       108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL  186 (383)
T 3eg5_B          108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  186 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            4566777776631          11346677888888888655 555666665 56789999999989999999999999


Q ss_pred             HHhcCCCCHH-----HHH------HHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHH
Q 014088          295 SNATSGGSNE-----QIK------FLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQA  362 (431)
Q Consensus       295 ~~l~~~~~~~-----~~~------~l~~~~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~  362 (431)
                      ..++....++     ...      ...+..-...+++.++. .+.+.+..++..+..++...+....      .-..+..
T Consensus       187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~------R~~lR~e  260 (383)
T 3eg5_B          187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSE  260 (383)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHH
T ss_pred             HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH------HHHHHHH
Confidence            8888755311     111      11233457788888876 5677777777777777766543321      1225677


Q ss_pred             HHhhccHHHHHHhhcCCCHHHHHH
Q 014088          363 IDDAEGLEKIENLQSHDNTEIYEK  386 (431)
Q Consensus       363 l~~~~~~~~l~~l~~~~~~~v~~~  386 (431)
                      +...|..+.+..+...+++++...
T Consensus       261 f~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          261 LMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             HHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             HHHCChHHHHHHHhcCCChhHHHH
Confidence            888998888998877778777544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.92  E-value=1.4  Score=37.19  Aligned_cols=84  Identities=11%  Similarity=0.169  Sum_probs=61.5

Q ss_pred             ChHhHHHHHhCCChHHHHHhhCC----C-------CHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccch
Q 014088           48 TSENTRVVIDHGAVPIFVRLLSS----P-------TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL  116 (431)
Q Consensus        48 ~~~~~~~~~~~g~i~~L~~lL~~----~-------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~  116 (431)
                      ...+-+.+ ..+++..|+.+|..    +       +...+..++.||..+..........+...+.+..+...| .++++
T Consensus        33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~  110 (233)
T 2f31_A           33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVP  110 (233)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSH
T ss_pred             CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCc
Confidence            44555666 46778888887742    1       356678899999999876665555555566677777777 78889


Q ss_pred             hHHHHHHHHHHHhhcCC
Q 014088          117 SMLRNATWTLSNFCRGK  133 (431)
Q Consensus       117 ~~~~~a~~~L~~l~~~~  133 (431)
                      .++..++..|..+|..+
T Consensus       111 ~~r~~~leLL~~lc~~~  127 (233)
T 2f31_A          111 NMMIDAAKLLSALCILP  127 (233)
T ss_dssp             HHHHHHHHHHHHHHTCS
T ss_pred             hHHHHHHHHHHHHHhCC
Confidence            99999999999998774

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=94.87  E-value=1.1  Score=47.81  Aligned_cols=211  Identities=12%  Similarity=0.024  Sum_probs=118.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHH
Q 014088           71 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL  148 (431)
Q Consensus        71 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L  148 (431)
                      .+...|..|-..|.++-..+          .+...+...|. .+.+..+|..|+..|.+..... ..........+-..+
T Consensus        25 ~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~l   94 (1204)
T 3a6p_A           25 STQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSV   94 (1204)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            36677888877777763221          24444555553 5567889999999999987653 222222222333344


Q ss_pred             HHhhcC-------CChHHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC---C-
Q 014088          149 ERLIHS-------NDDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG---D-  216 (431)
Q Consensus       149 ~~lL~~-------~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~---~-  216 (431)
                      +..+..       ....++..++.++..++... +..-     .++++.++.++.. ++..+..++.+|..++..   . 
T Consensus        95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~  168 (1204)
T 3a6p_A           95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQ  168 (1204)
T ss_dssp             HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcccc
Confidence            444331       35788888898998887542 1111     1566777777755 345566778888777642   0 


Q ss_pred             ---hhhhH---HHhhc---CChHHHHHHhccc------------------chhhHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 014088          217 ---DMQTQ---CIINH---QALPCLLDLLTQN------------------YKKSIKKEACWTISNITAGNVNQIQAIIEA  269 (431)
Q Consensus       217 ---~~~~~---~~~~~---~~l~~L~~lL~~~------------------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  269 (431)
                         .....   ..+..   .+++.+..++...                  .+..++..++.++.+...--+-  ..+.+.
T Consensus       169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~  246 (1204)
T 3a6p_A          169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAE  246 (1204)
T ss_dssp             CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhc
Confidence               10111   01111   2233333334321                  1345666777777765542111  122232


Q ss_pred             C--CHHHHHHHHccCCHhHHHHHHHHHHHhcCCC
Q 014088          270 G--IIGPLVNLLLNAEFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       270 ~--~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  301 (431)
                      .  +++.++.++.  +++++..|+.+|..++...
T Consensus       247 ~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~  278 (1204)
T 3a6p_A          247 NCKLLEILCLLLN--EQELQLGAAECLLIAVSRK  278 (1204)
T ss_dssp             TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred             cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence            2  5666665544  5789999999999999755

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.70  E-value=1.6  Score=39.85  Aligned_cols=126  Identities=10%  Similarity=0.064  Sum_probs=84.9

Q ss_pred             ChHhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccch
Q 014088           48 TSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL  116 (431)
Q Consensus        48 ~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~  116 (431)
                      ...+.+.+. .+++..|+.+|..           .+...+..++.||..+..........+.....+..+...+ .++++
T Consensus        99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~  176 (383)
T 3eg5_B           99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVP  176 (383)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSH
T ss_pred             ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCch
Confidence            345556666 6778888888741           2457788899999999876665555555566778888887 78889


Q ss_pred             hHHHHHHHHHHHhhcCCC-CC-ChhhH-----------hhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCCh
Q 014088          117 SMLRNATWTLSNFCRGKP-QP-LFEQT-----------RPALPALERLIHS-NDDEVLTDACWALSYLSDGTN  175 (431)
Q Consensus       117 ~~~~~a~~~L~~l~~~~~-~~-~~~~~-----------~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~  175 (431)
                      .++..++.+|..+|.... .. .....           ..-+..++..+++ .+.+.+..++..+..+....+
T Consensus       177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC
Confidence            999999999999998753 22 11111           1124456667765 466777777666666665543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=94.52  E-value=0.064  Score=42.46  Aligned_cols=73  Identities=14%  Similarity=0.210  Sum_probs=58.2

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE  392 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~  392 (431)
                      ++..|..-++.+++.++..|+..|-.+++++...           |+..+....+++.+..+... .++.|++++..++.
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~-----------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~  121 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI-----------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMV  121 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH-----------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH-----------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence            3555666677889999999999999999988654           67777777788888887654 78999999999998


Q ss_pred             HhcCC
Q 014088          393 TYWVE  397 (431)
Q Consensus       393 ~~~~~  397 (431)
                      .|-..
T Consensus       122 ~W~~~  126 (163)
T 1x5b_A          122 EWSEE  126 (163)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77653

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=93.85  E-value=2.2  Score=38.82  Aligned_cols=238  Identities=14%  Similarity=0.055  Sum_probs=120.0

Q ss_pred             HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 014088           50 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  129 (431)
Q Consensus        50 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  129 (431)
                      ......++...+..|+.++.++++.-|...-.+|..+-+.-...|..+.. .+-..+.+.+.....-.-....+.+++.+
T Consensus       120 ~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsI  198 (403)
T 3fga_B          120 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSI  198 (403)
T ss_dssp             HHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             hhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence            33444555567888999999999999999999888887554444444332 11233444442222222233455666666


Q ss_pred             hcCCCCCC-hhhHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHH
Q 014088          130 CRGKPQPL-FEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  207 (431)
Q Consensus       130 ~~~~~~~~-~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  207 (431)
                      ..+...+. .....-+...|+.+.+...- ..-.....|+......++.....     ++..+++.=-..++.-...-+.
T Consensus       199 inGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~  273 (403)
T 3fga_B          199 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLN  273 (403)
T ss_dssp             HHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHH
T ss_pred             HcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCcHHHHHHHH
Confidence            65542222 22223344555556554432 22234444444444444433331     1222222211122222222333


Q ss_pred             HHhHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH---hCCHHHHHHHH----
Q 014088          208 TVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLL----  279 (431)
Q Consensus       208 ~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll----  279 (431)
                      -+..+.... +.....+. ..+...+...+.++ +..|.+.|+....     ++. ...++.   ..++|.+...+    
T Consensus       274 Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wn-----Ne~-i~~li~~n~~~IlPii~p~L~~~~  345 (403)
T 3fga_B          274 ELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWN-----NEY-IMSLISDNAAKILPIMFPSLYRNS  345 (403)
T ss_dssp             HHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGG-----CHH-HHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhc-----cHH-HHHHHHHhHHHHHHHHHHHHHHHH
Confidence            344444322 22222222 24667777788887 7888887765432     122 222222   12345544444    


Q ss_pred             ccC-CHhHHHHHHHHHHHhcCCC
Q 014088          280 LNA-EFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       280 ~~~-~~~v~~~a~~aL~~l~~~~  301 (431)
                      ... +..++..+..++.-+...+
T Consensus       346 ~~HWn~~v~~l~~~vlk~l~e~d  368 (403)
T 3fga_B          346 KTHWNKTIHGLIYNALKLFMEMN  368 (403)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHccCHHHHHHHHHHHHHHHHhC
Confidence            333 7788888888888776543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.40  E-value=1.8  Score=39.56  Aligned_cols=139  Identities=14%  Similarity=0.079  Sum_probs=94.5

Q ss_pred             hhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHH-HH----------H
Q 014088          241 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-IK----------F  308 (431)
Q Consensus       241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~----------~  308 (431)
                      +......++.+|..+... ......++. ...+..+...+..+.+.++..++..|..++....++. ..          .
T Consensus        71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            456677888888887655 555555555 5678888888888899999999988888876543111 11          1


Q ss_pred             HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 014088          309 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  386 (431)
Q Consensus       309 l~~~~~l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~  386 (431)
                      ..+..-...+++.++ ..+.+.+..++..+..++...+....      .-.++..+...|..+.+..+....++++...
T Consensus       150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~------R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH------HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence            123345667887776 45667777777777777766554322      1236777888998888888877777777544

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.23  E-value=2.5  Score=44.38  Aligned_cols=165  Identities=15%  Similarity=0.173  Sum_probs=106.4

Q ss_pred             hHHHHHhhCC----CCHHHHHHHHHHHHHhc----CCChHHHHHHHHcCChHHHHHHhc---cccchhHHHHHHHHHHHh
Q 014088           61 VPIFVRLLSS----PTDDVREQAVWALGNVA----GDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNF  129 (431)
Q Consensus        61 i~~L~~lL~~----~~~~v~~~a~~~L~~l~----~~~~~~~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l  129 (431)
                      +..+..++++    .++.++..++.+++.+.    ...+.+     ....++.+.+.+.   ...+.+-+..++.+|+|+
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence            3444455554    35666777777776664    221111     0012344444432   344667778899999998


Q ss_pred             hcCCCCCChhhHhhhHHHHHHhhcC-------CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc--CCCCcc
Q 014088          130 CRGKPQPLFEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPS  200 (431)
Q Consensus       130 ~~~~~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~  200 (431)
                      ...          ..++.+.+++..       ....++..|+++|..+....+...+        +.+.++.  ...+++
T Consensus       468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E  529 (1056)
T 1lsh_A          468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  529 (1056)
T ss_dssp             TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence            753          467777777742       2357889999999999977665444        5567777  446778


Q ss_pred             cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC
Q 014088          201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  258 (431)
Q Consensus       201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  258 (431)
                      +|..|+..|...   ++..       ..+..+...+..+.+..|+......|.+++..
T Consensus       530 vRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s  577 (1056)
T 1lsh_A          530 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  577 (1056)
T ss_dssp             HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence            888888777432   2322       23566777887765889999999999999884

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=92.56  E-value=0.38  Score=36.90  Aligned_cols=72  Identities=14%  Similarity=0.247  Sum_probs=57.4

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  393 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  393 (431)
                      ++..|..-++.+++.++..|+..|..++++++..           |+..+.+..+++.+..+....+++|++++..++..
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~-----------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~  111 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI-----------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVE  111 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH-----------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            3555666677788999999999999999988654           66667677788888888777889999999999987


Q ss_pred             hcC
Q 014088          394 YWV  396 (431)
Q Consensus       394 ~~~  396 (431)
                      +-.
T Consensus       112 W~~  114 (140)
T 3ldz_A          112 WTD  114 (140)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=92.25  E-value=0.63  Score=36.02  Aligned_cols=72  Identities=15%  Similarity=0.182  Sum_probs=58.4

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC------CCHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH------DNTEIYEKA  387 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~------~~~~v~~~a  387 (431)
                      ++..|..-++++++.++..|+..|-.++++++..           |+..+....+++.+..+...      .+++|++++
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~-----------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki  107 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK-----------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRV  107 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHH
Confidence            3555666667889999999999999999998654           77778888889998888653      489999999


Q ss_pred             HHHHHHhcC
Q 014088          388 VKILETYWV  396 (431)
Q Consensus       388 ~~~l~~~~~  396 (431)
                      ..++..|-.
T Consensus       108 l~li~~W~~  116 (148)
T 1mhq_A          108 IEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=92.23  E-value=1.2  Score=38.72  Aligned_cols=135  Identities=15%  Similarity=0.094  Sum_probs=87.1

Q ss_pred             cHHHHHHHHhHhhcCChhhhHHHh-hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH--hCCHHHHHH
Q 014088          201 VLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--AGIIGPLVN  277 (431)
Q Consensus       201 v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~  277 (431)
                      ....++..|.-++..-....+.+- +...+..|+ +.... .+.+++.|+++|+...+++|.....+.+  ..++..++.
T Consensus        44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~  121 (315)
T 3qml_C           44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA  121 (315)
T ss_dssp             HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence            455566666666654333333222 323333344 22333 6789999999999999999999988877  345666655


Q ss_pred             HHcc-------CCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHh
Q 014088          278 LLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKA  343 (431)
Q Consensus       278 ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~~L~~l~~~  343 (431)
                      -|..       ....+.+.-+.+|.-|+.... ..     ....+..|.+++...  +++++..++..+..++..
T Consensus       122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~~  190 (315)
T 3qml_C          122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILKA  190 (315)
T ss_dssp             HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHccc
Confidence            4433       234566777888888877641 11     134567777777655  889999999999998863

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=92.13  E-value=0.71  Score=36.71  Aligned_cols=72  Identities=15%  Similarity=0.235  Sum_probs=58.1

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA  387 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a  387 (431)
                      ++..|..-++++++.++..|+..|-.++++++..           |+..+.+..+++.|..+..      ..+.+|++++
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~-----------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki  119 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR-----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV  119 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence            3556666777889999999999999999998754           6777778888888888865      2468999999


Q ss_pred             HHHHHHhcC
Q 014088          388 VKILETYWV  396 (431)
Q Consensus       388 ~~~l~~~~~  396 (431)
                      ..++..|-.
T Consensus       120 l~li~~W~~  128 (171)
T 1juq_A          120 IELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987653

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=92.00  E-value=0.49  Score=36.02  Aligned_cols=77  Identities=14%  Similarity=0.238  Sum_probs=54.5

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhh-ccHHHHHHhhcCC--------CHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA-EGLEKIENLQSHD--------NTEIY  384 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~l~~~~--------~~~v~  384 (431)
                      +++.|..-|+.+++.+..++|.+|..++..+...           |...+.+. ..|+.+.+....+        +..||
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~-----------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR  118 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE-----------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVR  118 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH-----------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH-----------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHH
Confidence            5777778888888889999999999998766432           44444433 3344444443222        38899


Q ss_pred             HHHHHHHHHhcCCCCCC
Q 014088          385 EKAVKILETYWVEEDED  401 (431)
Q Consensus       385 ~~a~~~l~~~~~~e~~~  401 (431)
                      .+|..+++-+|+++...
T Consensus       119 ~~AkEl~~ll~d~~~~~  135 (140)
T 1vdy_A          119 ETAHETISAIFSEENGS  135 (140)
T ss_dssp             HHHHHHHHHHTCCSSCC
T ss_pred             HHHHHHHHHHhCcCCCC
Confidence            99999999999987654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=91.78  E-value=0.8  Score=35.41  Aligned_cols=72  Identities=17%  Similarity=0.249  Sum_probs=58.5

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA  387 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a  387 (431)
                      .+..|..-++++++.++..|+..|..++++++..           |+..+....+++.|..+..      ..+++|++++
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~-----------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki  117 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR-----------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKI  117 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH-----------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH-----------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHH
Confidence            3555656667889999999999999999998764           6777888888888888864      3689999999


Q ss_pred             HHHHHHhcC
Q 014088          388 VKILETYWV  396 (431)
Q Consensus       388 ~~~l~~~~~  396 (431)
                      ..++..|-.
T Consensus       118 l~li~~W~~  126 (149)
T 3g2s_A          118 LELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=91.29  E-value=4.5  Score=37.45  Aligned_cols=237  Identities=13%  Similarity=0.048  Sum_probs=123.4

Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 014088           51 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  130 (431)
Q Consensus        51 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  130 (431)
                      .....++...+..|+.++.++++.-|...-.+|..+-..-...|..+.. .+-..+.+.+.......-....+.+++.+.
T Consensus       154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIi  232 (449)
T 2npp_B          154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSII  232 (449)
T ss_dssp             TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred             hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence            3455566678899999999999999999888888776433333433332 122334444433333333456677777777


Q ss_pred             cCCCCC-ChhhHhhhHHHHHHhhcCCChH-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHH
Q 014088          131 RGKPQP-LFEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  208 (431)
Q Consensus       131 ~~~~~~-~~~~~~~~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~  208 (431)
                      .+.... ......-+...|+.+.+...-. .-.....|+......++.....     ++..|++.=-..++.=...-+.-
T Consensus       233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~e  307 (449)
T 2npp_B          233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNE  307 (449)
T ss_dssp             SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHH
T ss_pred             hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHH
Confidence            765322 2223333455566666654322 2233444554444444433221     12222222211222222223444


Q ss_pred             HhHhhcCC-hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHH---hCCHHHHHHHHcc---
Q 014088          209 VGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN---  281 (431)
Q Consensus       209 l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~---  281 (431)
                      +..+.... +...+.+. ..+...+.+.+.++ +..|.+.|+....     ++... .++.   ..++|.+..-+..   
T Consensus       308 leeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~-----N~~i~-~li~~n~~~IlPii~p~L~~~s~  379 (449)
T 2npp_B          308 LEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWN-----NEYIM-SLISDNAAKILPIMFPSLYRNSK  379 (449)
T ss_dssp             HHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGG-----CHHHH-HHHHTTHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHC-----CHHHH-HHHHhchhhhHHhhHHHHHHHHH
Confidence            44444322 22222222 24667777888887 8888888765432     22222 2222   1245666665532   


Q ss_pred             -C-CHhHHHHHHHHHHHhcCCC
Q 014088          282 -A-EFEIKKEAAWAISNATSGG  301 (431)
Q Consensus       282 -~-~~~v~~~a~~aL~~l~~~~  301 (431)
                       . +..++..+..++.-+...+
T Consensus       380 ~HWn~~V~~la~~vlk~l~e~d  401 (449)
T 2npp_B          380 THWNKTIHGLIYNALKLFMEMN  401 (449)
T ss_dssp             CCSSTTHHHHHHHHHHHHHTTC
T ss_pred             HhcCHHHHHHHHHHHHHHHHHC
Confidence             2 5678888888887666543

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=90.27  E-value=4.3  Score=35.22  Aligned_cols=150  Identities=11%  Similarity=0.064  Sum_probs=95.6

Q ss_pred             hhHHHHHHhhcCC------ChHHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088          143 PALPALERLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  215 (431)
Q Consensus       143 ~~i~~L~~lL~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~  215 (431)
                      .-+..+..+++++      +.+-...++..|..++.+-.--.+.+- +...+..|+ +.....+.+++.+.++|+...+.
T Consensus        22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN  100 (315)
T 3qml_C           22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN  100 (315)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence            3444555566654      455677888888888866543333222 223444444 33445667899999999999999


Q ss_pred             ChhhhHHHhh--cCChHHHHHHhccc------chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHh
Q 014088          216 DDMQTQCIIN--HQALPCLLDLLTQN------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFE  285 (431)
Q Consensus       216 ~~~~~~~~~~--~~~l~~L~~lL~~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~  285 (431)
                      ++.....+.+  ..++..+..-|...      ....+++.-+.+|.-|...+.+.     ....+..|.+++...  +..
T Consensus       101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~  175 (315)
T 3qml_C          101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQ  175 (315)
T ss_dssp             CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHH
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHH
Confidence            9987776653  23444444444320      13466777777888887764221     134567777777766  899


Q ss_pred             HHHHHHHHHHHhc
Q 014088          286 IKKEAAWAISNAT  298 (431)
Q Consensus       286 v~~~a~~aL~~l~  298 (431)
                      ++..++..+..+.
T Consensus       176 ~k~Kvl~li~d~f  188 (315)
T 3qml_C          176 LQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999998888776

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=89.97  E-value=11  Score=34.29  Aligned_cols=133  Identities=12%  Similarity=0.112  Sum_probs=84.9

Q ss_pred             ChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh-hh-hHHHh---------
Q 014088          156 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQ-TQCII---------  224 (431)
Q Consensus       156 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~-~~~~~---------  224 (431)
                      +......++.||..+..+.......+...+.+..+...+.++++.++..++..|..+|...+ .. ...++         
T Consensus        71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~  150 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  150 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence            35678889999998887665554444455788999999998999999999999988887553 11 12221         


Q ss_pred             -hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCH--HH----HHHHHHhCCHHHHHHHHcc-CCHhHHHH
Q 014088          225 -NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV--NQ----IQAIIEAGIIGPLVNLLLN-AEFEIKKE  289 (431)
Q Consensus       225 -~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~--~~----~~~l~~~~~i~~L~~ll~~-~~~~v~~~  289 (431)
                       +..-+..+++.+......+.+..++..+..+....+  +.    +..+...|+.+. +.-+.. .++.+...
T Consensus       151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~i-l~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELREIENEDMKVQ  222 (386)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH-HHHHTTCCCHHHHHH
T ss_pred             CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH-HHHHhccCChhHHHH
Confidence             334566788888755366777666666666665322  22    234445555554 444444 45555443

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=86.86  E-value=2.3  Score=35.54  Aligned_cols=71  Identities=13%  Similarity=0.305  Sum_probs=56.0

Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHH
Q 014088          315 IKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILET  393 (431)
Q Consensus       315 l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~  393 (431)
                      +..|..-++++++.++..|+..|..++++++..           |...+....+++.|..+. ...+++|++++..++..
T Consensus        47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~-----------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~  115 (226)
T 3zyq_A           47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQT-----------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQA  115 (226)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH-----------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH-----------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            555666677889999999999999999988764           566676777777777764 45789999999999987


Q ss_pred             hcC
Q 014088          394 YWV  396 (431)
Q Consensus       394 ~~~  396 (431)
                      +-.
T Consensus       116 W~~  118 (226)
T 3zyq_A          116 WAH  118 (226)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=86.70  E-value=2.5  Score=35.16  Aligned_cols=71  Identities=20%  Similarity=0.284  Sum_probs=54.7

Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHH
Q 014088          315 IKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILET  393 (431)
Q Consensus       315 l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~  393 (431)
                      +..|..-++++++.++..|+..|..++++++..           |+..+.+..+++.+..+. +..+.+|++++..+++.
T Consensus        44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~-----------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~  112 (220)
T 1dvp_A           44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP-----------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT  112 (220)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH-----------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            445555667789999999999999999998653           566666667777777774 45689999999988877


Q ss_pred             hcC
Q 014088          394 YWV  396 (431)
Q Consensus       394 ~~~  396 (431)
                      +-.
T Consensus       113 W~~  115 (220)
T 1dvp_A          113 WAY  115 (220)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=85.85  E-value=15  Score=31.15  Aligned_cols=88  Identities=18%  Similarity=0.149  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 014088          117 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH  196 (431)
Q Consensus       117 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  196 (431)
                      +.+-..+.-...++-+.   .......+++.++.+..+.+.++|+.....+...+...+....     ..++.|..++.+
T Consensus        30 ~~kl~~L~qa~el~~~~---dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d  101 (257)
T 3gs3_A           30 STKCELLAKVQETVLGS---CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRD  101 (257)
T ss_dssp             HHHHHHHHHHHHHHTTT---TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcc---CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcC
Confidence            34555555555555442   1235567888888887788899999999999888855543322     456778888888


Q ss_pred             CCcccHHHHHHHHhHh
Q 014088          197 PSPSVLIPALRTVGNI  212 (431)
Q Consensus       197 ~~~~v~~~a~~~l~~l  212 (431)
                      +++.+...++.+..++
T Consensus       102 ~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A          102 NSAQVIKRVIQACGSI  117 (257)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            8888888888877665

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=85.63  E-value=7.8  Score=35.13  Aligned_cols=87  Identities=13%  Similarity=-0.012  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 014088          118 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP  197 (431)
Q Consensus       118 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  197 (431)
                      .+-..+.-+..+..+.   .......+++.++.+-.+.+.++|++++..+...+....+...     .+++.|..++.++
T Consensus        41 ~Kl~~L~q~~EL~l~~---dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d~  112 (386)
T 3o2t_A           41 SKITVLKQVQELIINK---DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRDE  112 (386)
T ss_dssp             HHHHHHHHHHHHHHTT---CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCC
Confidence            3444444455544432   1135578999999999999999999999999888765443322     4567788888888


Q ss_pred             CcccHHHHHHHHhHh
Q 014088          198 SPSVLIPALRTVGNI  212 (431)
Q Consensus       198 ~~~v~~~a~~~l~~l  212 (431)
                      ++.+...++.+.+++
T Consensus       113 d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          113 NVNVVKKAILTMTQL  127 (386)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            888888888888775

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=85.28  E-value=3.5  Score=32.12  Aligned_cols=71  Identities=13%  Similarity=0.155  Sum_probs=53.9

Q ss_pred             hHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHH-HHHhhc---CCCHHHHHHHHH
Q 014088          315 IKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQS---HDNTEIYEKAVK  389 (431)
Q Consensus       315 l~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~---~~~~~v~~~a~~  389 (431)
                      +..|..-++ .+++.++..|+..|..++++++..           |+..+.+..+++. +..+..   .+...|++++..
T Consensus        55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~-----------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~  123 (157)
T 1elk_A           55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR-----------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLN  123 (157)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH-----------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence            445555665 578899999999999999998653           6777777778887 666652   345799999999


Q ss_pred             HHHHhcC
Q 014088          390 ILETYWV  396 (431)
Q Consensus       390 ~l~~~~~  396 (431)
                      ++..|-.
T Consensus       124 li~~W~~  130 (157)
T 1elk_A          124 LIQSWAD  130 (157)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987655

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=84.90  E-value=1.7  Score=33.23  Aligned_cols=73  Identities=8%  Similarity=0.047  Sum_probs=57.8

Q ss_pred             CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 014088          271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~  343 (431)
                      ++..+.+-+.++++.++..|+..|-.+..++++.....+.+..+++.|..+++..++.++..++..+......
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~  115 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE  115 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            3556777788889999999999999998888876666666666777777777767889999999988877653

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=83.80  E-value=11  Score=34.07  Aligned_cols=137  Identities=15%  Similarity=0.117  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc
Q 014088          244 IKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL  322 (431)
Q Consensus       244 v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll  322 (431)
                      .+...+.-+..+.. .++.    +. ..+++.++++-.+.+.++|+.++.+|...+.... +...     .+++.|..++
T Consensus        41 ~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~-el~~-----~~l~~L~~LL  109 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI-ELLL-----KLIANLNMLL  109 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-GGHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHH
Confidence            45555555555433 2232    11 3578889998888899999999999988875332 2222     2577888888


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCC----cchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088          323 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGG----VNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       323 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  395 (431)
                      +.+++.+.+.++.+..++....-..--  ..+.    .+.....+..  ....|..+..+.|.-++-.+.+.+++..
T Consensus       110 ~d~d~~V~K~~I~~~tslYpl~f~~i~--~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          110 RDENVNVVKKAILTMTQLYKVALQWMV--KSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHH--HC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHh--cCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            888999998888887777543211100  0000    0123333332  2556777788899999999999998854

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=83.48  E-value=5.5  Score=41.35  Aligned_cols=217  Identities=13%  Similarity=0.102  Sum_probs=119.4

Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc----CCChHHHHHHHHHHH-----HhccC
Q 014088          103 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----SNDDEVLTDACWALS-----YLSDG  173 (431)
Q Consensus       103 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~-----~l~~~  173 (431)
                      +..|+++- .+.-.+++..|-.+|......-+...    .-++|.+++.|+    ..+.+-.+.|+.+|.     .....
T Consensus       135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~----~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~  209 (997)
T 1vsy_5          135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSY----GVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT  209 (997)
T ss_dssp             HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHH----HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred             HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence            34555544 56678999999999999887644333    345555555554    456777788888765     12222


Q ss_pred             ChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCCh--hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHH
Q 014088          174 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  251 (431)
Q Consensus       174 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  251 (431)
                      +.....     .+++.+++....++++++..+-.+...+...-.  ... ..++...+    .-+..+ +..+ ..+...
T Consensus       210 d~~~~~-----~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~-~~~~~~~~----~~i~~~-d~~i-~~~~~~  277 (997)
T 1vsy_5          210 DYKDIG-----RLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSV-CVISDQAF----LPLAPP-DGTI-NLQVEA  277 (997)
T ss_dssp             CHHHHH-----HHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSC-CCCCGGGT----GGGCCS-CSST-TSHHHH
T ss_pred             ChHHHH-----HHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHH-HHHHHHHH----hccCCC-cHHH-HHHHHH
Confidence            222222     456777777777888888777666555543211  110 01111111    112212 2111 111111


Q ss_pred             HHHhhcCCHHHHHHHHH--hCCHHHHHHHHcc-CC--HhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 014088          252 ISNITAGNVNQIQAIIE--AGIIGPLVNLLLN-AE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD  326 (431)
Q Consensus       252 L~nl~~~~~~~~~~l~~--~~~i~~L~~ll~~-~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~  326 (431)
                      .....   ...+....+  .++...++++.++ .+  ++....++..+.++.......     ....++..+.+.+.+++
T Consensus       278 ~~~~~---~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dh  349 (997)
T 1vsy_5          278 VKLAK---KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKH  349 (997)
T ss_dssp             HHHHT---THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCC
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCC
Confidence            11111   111222211  2345556677633 36  888889888877776433100     01123566777888899


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 014088          327 PRIVTVCLEGLENILKAG  344 (431)
Q Consensus       327 ~~v~~~al~~L~~l~~~~  344 (431)
                      +.++..++.++..++..-
T Consensus       350 p~~R~~a~~~l~~il~~~  367 (997)
T 1vsy_5          350 PEIIHLVVKSLLSTCNKI  367 (997)
T ss_dssp             HHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998887763

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19

Probab=82.35  E-value=25  Score=30.85  Aligned_cols=179  Identities=14%  Similarity=0.143  Sum_probs=103.6

Q ss_pred             cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc--------cchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCH
Q 014088          201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ--------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGII  272 (431)
Q Consensus       201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i  272 (431)
                      +++..++.+..+....+.. + .+....+|.+++..-.        ..++++..-....+..+...-.+....+.+. ++
T Consensus        45 vKkeiLkLiet~i~~~~d~-~-~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~-VF  121 (321)
T 1w9c_A           45 VKRETLKLISGWVSRSNDP-Q-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA-VF  121 (321)
T ss_dssp             HHHHHHHHHHHHHTTCSCH-H-HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHcCCCH-H-HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HH
Confidence            5666666776666544322 2 2333567777653311        1145555555555555554333444444443 66


Q ss_pred             HHHHHHHccC---CHhHHHHHHHHHHHhcCCC-------CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088          273 GPLVNLLLNA---EFEIKKEAAWAISNATSGG-------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  342 (431)
Q Consensus       273 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~  342 (431)
                      ..-+++++..   .|+.|.+=...|..+..++       ++++.+.     +++.++-..++.++++...++.++..++.
T Consensus       122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll~  196 (321)
T 1w9c_A          122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLLQ  196 (321)
T ss_dssp             HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            6677778753   6788877777776665543       2333333     46677777889999999999999999988


Q ss_pred             hhhhhhhcCCCCCcchHHHHHHhhccHHHHHHh----hcCCCHHHHHHHHHHHHHhcC
Q 014088          343 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL----QSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      ...+..+         +...+-+.-.++.+.++    ..+....-.+.-..+|..+|.
T Consensus       197 n~~~~~~---------~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~  245 (321)
T 1w9c_A          197 NVAQEEA---------AAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN  245 (321)
T ss_dssp             HHHHCHH---------HHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred             HHhcChH---------HHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHH
Confidence            7754221         34444444444444443    344443344455566666664

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=81.68  E-value=3.6  Score=31.70  Aligned_cols=72  Identities=8%  Similarity=-0.079  Sum_probs=58.8

Q ss_pred             CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHH
Q 014088          271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILK  342 (431)
Q Consensus       271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~al~~L~~l~~  342 (431)
                      ++..+..-+.++++.++..|+..|-.+..++++.....+.+..+++.|..+++.      .++.++..++..+.....
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            355677778889999999999999999999887777777778889999988863      367899988888777654

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=81.21  E-value=2.8  Score=32.96  Aligned_cols=72  Identities=4%  Similarity=-0.008  Sum_probs=56.7

Q ss_pred             CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHH
Q 014088          271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILK  342 (431)
Q Consensus       271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~  342 (431)
                      ++..|.+-+.++++.++..|+..|-.+..++.+.....+.+..+++.|..+++. .++.++..++..+.....
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            355677778888999999999999999998887777666667778888887764 577888888887776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	431
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-89
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-14
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	7e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	8e-69
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-19
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-12
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	7e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	9e-43
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-20
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-19
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-14
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-21
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-07
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	7e-21
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	7e-06
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	7e-05
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-11
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-10
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	7e-12
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-10
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-04
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	2e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	2e-05
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	2e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	4e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-04
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	6e-04
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	0.002

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  278 bits (711), Expect = 2e-89
 Identities = 219/371 (59%), Positives = 270/371 (72%), Gaps = 6/371 (1%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +Q EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 136 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 195

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 151
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +     ALP L +L
Sbjct: 196 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 254

Query: 152 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 211
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 255 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 314

Query: 212 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 271
           IVTG+D+QTQ +IN   LP L  LL  + K++IKKEACWTISNITAGN  QIQA+I+A +
Sbjct: 315 IVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANL 373

Query: 272 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 329
           I PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 374 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 433

Query: 330 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 389
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 434 IEVTLDALENILKMGEADKEA-RGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 492

Query: 390 ILETYWVEEDE 400
           I+ETY+ EE++
Sbjct: 493 IIETYFGEEED 503

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.2 bits (178), Expect = 1e-14
 Identities = 32/171 (18%), Positives = 76/171 (44%), Gaps = 2/171 (1%)

Query: 187 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT-QCIINHQALPCLLDLLTQNYKKSIK 245
            P++ + L        + A      I++ +       +I    +P L++ + +N  + ++
Sbjct: 78  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137

Query: 246 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 305
            EA W ++NI +G   Q + +++A  +   + LL     E+K++A WA+ N  +G S + 
Sbjct: 138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN-VAGDSTDY 196

Query: 306 IKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV 356
             +++    ++P+  L N   P ++      L N+ +  + + +       
Sbjct: 197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 247

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.0 bits (123), Expect = 7e-08
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 225 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ-IQAIIEAGIIGPLVNLLLNAE 283
             Q LP +   L  +     +  A      I +      I  +I+AG++  LV  +   +
Sbjct: 74  LQQELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 132

Query: 284 F-EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342
              ++ EAAWA++N  S G++ Q K +V    +     LL      +    +  L N+  
Sbjct: 133 PEMLQLEAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 191

Query: 343 AGEAEKNM 350
                ++ 
Sbjct: 192 DSTDYRDY 199

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  222 bits (566), Expect = 8e-69
 Identities = 179/368 (48%), Positives = 243/368 (66%), Gaps = 12/368 (3%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD   
Sbjct: 73  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 132

Query: 93  CRDLVLSNGALMPLLAQFNEH----AKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPA 147
            RDLV+ +GA+ PLLA              LRN TWTLSN CR K   P  +     LP 
Sbjct: 133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 192

Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR
Sbjct: 193 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 252

Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 267
            +GNIVTG D QTQ +I+  AL     LL  N K +I+KEA WT+SNITAG  +QIQ ++
Sbjct: 253 AIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVV 311

Query: 268 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 327
             G++  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D 
Sbjct: 312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 371

Query: 328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 387
           +I+ V L+ + NI +A E        G     +  I++  GL+KIE LQ H+N  +Y+ +
Sbjct: 372 KIIQVILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 425

Query: 388 VKILETYW 395
           + ++E Y+
Sbjct: 426 LNLIEKYF 433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.4 bits (212), Expect = 5e-19
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 9/196 (4%)

Query: 139 EQTRPALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRH- 196
                ++  + + I+SN+ E    A  A    LS      I  +I AG+ P+ V  L   
Sbjct: 9   GTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT 68

Query: 197 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 256
               +   +   + NI +G   QT+ +++  A+P     L  +    I ++A W + NI 
Sbjct: 69  DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIP-AFISLLASPHAHISEQAVWALGNIA 127

Query: 257 AGNVNQIQAIIEAGIIGPLVNLLLNAEF-----EIKKEAAWAISNATSGGSNEQIKFLVS 311
                    +I+ G I PL+ LL   +         +   W +SN      N        
Sbjct: 128 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR-NKNPAPPLDAV 186

Query: 312 QGCIKPLCDLLNCPDP 327
           +  +  L  LL+  DP
Sbjct: 187 EQILPTLVRLLHHNDP 202

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 2/160 (1%)

Query: 179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT-QCIINHQALPCLLDLLT 237
           Q  +   V   +V+ +   +    + A +    +++ +       II    +P  +  L 
Sbjct: 8   QGTVNWSV-EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG 66

Query: 238 QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 297
           +     I+ E+ W ++NI +G   Q +A+++ G I   ++LL +    I ++A WA+ N 
Sbjct: 67  KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 126

Query: 298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 337
              GS  +   +        L  L       +    L  L
Sbjct: 127 AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 166

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 31/177 (17%), Positives = 67/177 (37%), Gaps = 11/177 (6%)

Query: 1   MCCFDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGA 60
                   +   +        F    +     +Q EA W ++NI +G  +  + V++HG 
Sbjct: 256 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 315

Query: 61  VPIFVRLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 119
           VP  V +LS      +++A WA+ N   G + +    ++  G + PL+   +      ++
Sbjct: 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KII 374

Query: 120 RNATWTLSNFCRGKPQP--------LFEQTRPALPALERLIHSNDDEVLTDACWALS 168
           +     +SN  +   +         + E+    L  +E L    ++ V   +   + 
Sbjct: 375 QVILDAISNIFQAAEKLGETEKLSIMIEECG-GLDKIEALQRHENESVYKASLNLIE 430

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (123), Expect = 7e-08
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 226 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ-IQAIIEAGIIGPLVNLLLNAEF 284
           + ++  ++  +  +     + +A      + +      I  II AG+I   V+ L   + 
Sbjct: 12  NWSVEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70

Query: 285 -EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 343
             I+ E+AWA++N  S G++EQ K +V  G I     LL  P   I    +  L NI   
Sbjct: 71  SPIQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 129

Query: 344 GEAEKNM 350
           G A +++
Sbjct: 130 GSAFRDL 136

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (388), Expect = 9e-43
 Identities = 56/440 (12%), Positives = 115/440 (26%), Gaps = 68/440 (15%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
            Q   A+ + +         + V   G +   V LL SP  +V++ A  AL N+   S  
Sbjct: 18  YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT 77

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
            +        +   ++         + +  T  L N                    +R+I
Sbjct: 78  NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVI 137

Query: 153 ---------------HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 197
                             D EV  +A   L  LS     +      +G+   L+  +++ 
Sbjct: 138 IPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC 197

Query: 198 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-------------YKKSI 244
             +           +    ++  +           L+   +N                 +
Sbjct: 198 VAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKM 257

Query: 245 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 304
                         N      +  +  I   +NL+  ++ +   EA        +     
Sbjct: 258 MNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317

Query: 305 QI-----KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL- 358
                     + +  +  +  LL   +  +V      L N+ +     + MGN     + 
Sbjct: 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVT 377

Query: 359 ---------------------------------FAQAIDDAEGLEKIENL-QSHDNTEIY 384
                                             A+    +  L  I NL +S  + +  
Sbjct: 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437

Query: 385 EKAVKILETYWVEEDEDEPL 404
           E A  +L   W  ++    L
Sbjct: 438 EAARLLLSDMWSSKELQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (221), Expect = 5e-20
 Identities = 33/248 (13%), Positives = 78/248 (31%), Gaps = 16/248 (6%)

Query: 145 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 204
           +P   + + S D++      + + +         Q V + G   +LV+LLR P+ +V   
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 205 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 264
           A   + N+V               +   + LL +     I+K+    + N+++ +  + +
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 265 AIIEAGII--------------GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV 310
            I +A  +              G         + E+   A   + N +S  +  Q   + 
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ--TMR 181

Query: 311 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE 370
           +   +                   + +EN +          +      + Q   +A    
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 371 KIENLQSH 378
             ++    
Sbjct: 242 TEKSSTGC 249

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (213), Expect = 4e-19
 Identities = 40/357 (11%), Positives = 90/357 (25%), Gaps = 37/357 (10%)

Query: 61  VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 120
           +P  V+ LSS  +  +    + + +        +  V   G +  L+         ++ +
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQQ 62

Query: 121 NATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 178
            A   L N        +    +      A+  L  + + E+       L  LS     K 
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 179 QAVIEA--------------GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 224
           + + +A                            P V   A   + N+ + D  +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 225 NHQALPCLLDLL-------------TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 271
               +  L+  +              +N    +   +    + +             A  
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 272 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 331
                    N   ++               + +   +L     I+   +L+         
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEE-TNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 332 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 388
               G    L A +   + G +             +GL +I  L    N+++     
Sbjct: 302 EACAGALQNLTASKGLMSSGMS------QLIGLKEKGLPQIARLLQSGNSDVVRSGA 352

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 4e-16
 Identities = 31/304 (10%), Positives = 82/304 (26%), Gaps = 21/304 (6%)

Query: 101 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALERLIHSNDD 157
           G  +P   Q+             + + + C       Q +++     +  L  L+ S + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLG--GICKLVDLLRSPNQ 58

Query: 158 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 217
            V   A  AL  L   +                V LLR    + +   L  +   ++  D
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 218 MQTQCIINHQALPCLLDLL--------------TQNYKKSIKKEACWTISNITAGNVNQI 263
              + +I          ++               +     +   A   + N+++ +  + 
Sbjct: 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 264 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC-DLL 322
                +G+I  L+  + N     + +     +      +             + L  +  
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 323 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSHDNT 381
           N    +  T C     + +     +  +         +  +  ++ +   +  +      
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298

Query: 382 EIYE 385
              E
Sbjct: 299 ATLE 302

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (176), Expect = 2e-14
 Identities = 36/250 (14%), Positives = 76/250 (30%), Gaps = 14/250 (5%)

Query: 18  DQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 77
                      C   +   +      + +   +      +           S+ +D +  
Sbjct: 200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMN 259

Query: 78  QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 137
                       +PK    +  + A+   L    +  K + L      L N    K    
Sbjct: 260 NNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319

Query: 138 FEQTR------PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 191
              ++        LP + RL+ S + +V+      LS +S   +  +  V+   V P + 
Sbjct: 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVT 377

Query: 192 ELLRH------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 245
            LL         S  +L  A  TV N++       +   +   L  +++L   +      
Sbjct: 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437

Query: 246 KEACWTISNI 255
           + A   +S++
Sbjct: 438 EAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 8/116 (6%)

Query: 24  CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS------PTDDVRE 77
                    V    A  L+N++         V+ +   P   RLL+S       ++D+  
Sbjct: 338 RLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395

Query: 78  QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 133
            A + + N+    P+      S+  L  ++      A       A   LS+    K
Sbjct: 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (229), Expect = 5e-21
 Identities = 55/292 (18%), Positives = 101/292 (34%), Gaps = 5/292 (1%)

Query: 59  GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 118
            A+P   +LL+     V  +A   +  ++        ++ S   +  ++        +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 119 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 178
            R    TL N    +   L       +PAL +++ S  D VL  A   L  L        
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 238
            AV  AG   ++V LL   +   L      +  +  G+      I+       L++++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 239 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 298
              + +       +  + +   +   AI+EAG +  L   L +    + +   W + N  
Sbjct: 197 YTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 299 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 350
              S+   K    +G +  L  LL   D  +VT     L N+       K M
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 303

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (207), Expect = 3e-18
 Identities = 65/427 (15%), Positives = 113/427 (26%), Gaps = 84/427 (19%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           V F A   L N+          V   G +   V LL+             L  +A  + +
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
            + ++L++G    L+     +    +L   +  L                  + AL   +
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
                 ++ +  W L  LSD    +       G+   LV+LL     +V+  A   + N+
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNL 293

Query: 213 VTGDDMQTQCIIN----------------------------------------------- 225
              +      +                                                 
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 353

Query: 226 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 285
           H  LP ++ LL       + K     I N+     N    + E G I  LV LL+ A  +
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQD 412

Query: 286 IKKEAAWAISNATSGGS--------------------NEQIKFLVSQGCIKPLCDLLNCP 325
            ++  +   +                                 +     I     LL  P
Sbjct: 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP 472

Query: 326 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYE 385
              I  V    L  + +  EA             A+AI+       +  L    N  +  
Sbjct: 473 IENIQRVAAGVLCELAQDKEA-------------AEAIEAEGATAPLTELLHSRNEGVAT 519

Query: 386 KAVKILE 392
            A  +L 
Sbjct: 520 YAAAVLF 526

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (204), Expect = 7e-18
 Identities = 55/363 (15%), Positives = 109/363 (30%), Gaps = 26/363 (7%)

Query: 1   MCCFDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGA 60
           +  +  +   ++I                           +  + S  S N   +++ G 
Sbjct: 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 228

Query: 61  VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 120
           +      L+ P+  + +  +W L N++  + K   +    G L+ LL   + +       
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 121 NATWTLSNFCRGKPQPLFEQTRPALPAL--ERLIHSNDDEVLTDACWALSYLSDGTNDKI 178
             +    N  + K          AL           +  E    A   L+          
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348

Query: 179 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 238
            AV      P +V+LL  PS   LI A   +   +         +    A+P L+ LL +
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408

Query: 239 NYKK---------------------SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 277
            ++                       I +     +  +     N+   I     I   V 
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQ 467

Query: 278 LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 337
           LL +    I++ AA  +          +   + ++G   PL +LL+  +  + T     L
Sbjct: 468 LLYSPIENIQRVAAGVLCELAQDKEAAEA--IEAEGATAPLTELLHSRNEGVATYAAAVL 525

Query: 338 ENI 340
             +
Sbjct: 526 FRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (192), Expect = 2e-16
 Identities = 57/422 (13%), Positives = 107/422 (25%), Gaps = 60/422 (14%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
                A  L N++    E    +   G +P  V++L SP D V   A+  L N+      
Sbjct: 76  TARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 93  CRDLVLSNGALMPLLAQ------------------------------------------F 110
            +  V   G L  ++A                                            
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194

Query: 111 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 170
             +    +L   +  L                  + AL   +      ++ +  W L  L
Sbjct: 195 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 171 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 230
           SD    +       G+   LV+LL     +V+  A   + N+   +      +     + 
Sbjct: 255 SDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 231 CLLDLLTQNYKKSIKKE----ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 286
            L+  + +   +    E    A   +++          A+     +  +V LL       
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371

Query: 287 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP---------RIVTVCLEGL 337
             +A   +    +            QG I  L  LL                    +EG+
Sbjct: 372 LIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430

Query: 338 ENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 397
                       +            I     +     L       I   A  +L     +
Sbjct: 431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490

Query: 398 ED 399
           ++
Sbjct: 491 KE 492

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 5e-16
 Identities = 50/295 (16%), Positives = 105/295 (35%), Gaps = 8/295 (2%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSP 91
           V  +AA  +  ++   +    ++     V   VR + +  D +        L N++    
Sbjct: 33  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHR 91

Query: 92  KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-ALPALER 150
           +    +  +G +  L+         S+L  A  TL N    +            L  +  
Sbjct: 92  EGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 150

Query: 151 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 210
           L++  + + L      L  L+ G  +    ++ +G    LV ++R  +   L+     V 
Sbjct: 151 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 210

Query: 211 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 270
            +++        I+    +  L   LT   ++ + +   WT+ N++     Q       G
Sbjct: 211 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR-LVQNCLWTLRNLSDAATKQEG---MEG 266

Query: 271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 325
           ++G LV LL + +  +   AA  +SN T      ++      G    +  +L   
Sbjct: 267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (186), Expect = 1e-15
 Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 2/167 (1%)

Query: 174 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 233
            N +  A +     P L +LL      V+  A   V  +   +  +   + + Q +  ++
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 234 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 293
             +         +    T+ N++        AI ++G I  LV +L +    +   A   
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 294 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 340
           + N            +   G ++ +  LLN  + + + +  + L+ +
Sbjct: 125 LHNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 5e-10
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 44/136 (32%)

Query: 36  EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 95
               AL  +A     N  V+     +P+FV+LL SP ++++  A   L  +A D  +  +
Sbjct: 438 GCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAE 495

Query: 96  LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN 155
            + + GA                                             L  L+HS 
Sbjct: 496 AIEAEGAT------------------------------------------APLTELLHSR 513

Query: 156 DDEVLTDACWALSYLS 171
           ++ V T A   L  +S
Sbjct: 514 NEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 2e-07
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 87
           +Q  AA  L  +A    E    +   GA      LL S  + V   A   L  ++
Sbjct: 476 IQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.7 bits (221), Expect = 7e-21
 Identities = 40/227 (17%), Positives = 78/227 (34%), Gaps = 8/227 (3%)

Query: 36  EAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCR 94
            A   L ++     +N         + + V R L +    +R +A   +G  + +    +
Sbjct: 36  GALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ 94

Query: 95  DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIH 153
           + VL  GAL  LL   +  A  ++   A + +S   R +    L          L R + 
Sbjct: 95  EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 154

Query: 154 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 213
               ++   + + L  L  G  +    +   G+  +LV L+R          L  + ++V
Sbjct: 155 QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 214

Query: 214 TGDDMQTQCIIN-----HQALPCLLDLLTQNYKKSIKKEACWTISNI 255
           T      +          + L     LL Q+ +   + E C  +   
Sbjct: 215 TDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQT 261

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 7e-06
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 2/118 (1%)

Query: 226 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-F 284
            Q +P       Q   +  ++ A   ++++   N++      +   +  LV   L A   
Sbjct: 15  SQPMPPTAGEAEQAADQQEREGALELLADL-CENMDNAADFCQLSGMHLLVGRYLEAGAA 73

Query: 285 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342
            ++  AA  I   +   +  Q + L      K L  L       +    L  +  +++
Sbjct: 74  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 131

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 7e-05
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 21  FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 80
                       ++ ++A+ L N+  G  E+   +   G V   V L+ +      E  +
Sbjct: 148 VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVL 207

Query: 81  WALGNVAGDSP----KCRDLVLSNGALMPLLAQFNEH 113
            AL ++  D P    +CR+  L    L+    Q  + 
Sbjct: 208 GALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ 244

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 39/263 (14%), Positives = 70/263 (26%), Gaps = 28/263 (10%)

Query: 1   MCCFDLRFECILISLFVDQFFFHCFFSCCFG--AVQFEAAWALTNIASGTSENTRVVIDH 58
           +   +                     +       V+  A   L  I S   +     +  
Sbjct: 198 LNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP 257

Query: 59  GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 118
               I +  + S  D+V  Q +    NV  +                     ++      
Sbjct: 258 ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 317

Query: 119 LRNATWTLSNFCRGKPQPLFEQ-----------------------TRPALPALERLIHSN 155
           L+     L+     + +   +                            LP ++  I + 
Sbjct: 318 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 377

Query: 156 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 215
           D      A  A   + +G        +     P L+EL++ PS  V   A  TVG I   
Sbjct: 378 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC-- 435

Query: 216 DDMQTQCIINHQALPCLLDLLTQ 238
            ++  +  IN   L  LL  L +
Sbjct: 436 -ELLPEAAINDVYLAPLLQCLIE 457

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 34/263 (12%), Positives = 87/263 (33%), Gaps = 13/263 (4%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
           VQ EA   + ++ S              +   +  L+SP   VR++ + ALG++      
Sbjct: 147 VQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTIIALGHLV---MS 202

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
           C ++V  +  +  LL++ +++  +S  R     ++   R     + E     +P + +  
Sbjct: 203 CGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFC 261

Query: 153 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
           + +DDE+      A          ++   +   +    ++ L +       P        
Sbjct: 262 NVDDDELREYCIQAFESFVRRCPKEVYPHVST-IINICLKYLTYD------PNYNYDDED 314

Query: 213 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 272
              + M      +             +    +++ A   +  + +     +    +  + 
Sbjct: 315 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT-VS 373

Query: 273 GPLVNLLLNAEFEIKKEAAWAIS 295
             L++     E  +K +   A  
Sbjct: 374 PALISRFKEREENVKADVFHAYL 396

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 5e-09
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 49/255 (19%)

Query: 16   FVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDV 75
             V QF      S    +++  A  +L  +      + ++ +      + +   SSP+++V
Sbjct: 814  VVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL----KSVILEAFSSPSEEV 869

Query: 76   REQAVWALGNVA---------------GDSPKCRDLVLSN-----------------GAL 103
            +  A +ALG+++                  PK + L+L +                   +
Sbjct: 870  KSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENI 929

Query: 104  MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDA 163
              LL +  E A+          L       P+ L       LP L+  + S      +  
Sbjct: 930  WALLLKHCECAEEGTRNVVAECLGKLTLIDPETL-------LPRLKGYLISGSSYARSSV 982

Query: 164  CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 223
              A+ +        I  +++       ++ L  P  +V   AL T  +       +   I
Sbjct: 983  VTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPDLNVRRVALVTFNSAA---HNKPSLI 1038

Query: 224  INH--QALPCLLDLL 236
             +     LP L +  
Sbjct: 1039 RDLLDTVLPHLYNET 1053

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 5e-08
 Identities = 36/237 (15%), Positives = 78/237 (32%), Gaps = 10/237 (4%)

Query: 61  VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLS 117
           V + ++LL     +V+  AV  LG +     + +   + +  L   +    E        
Sbjct: 47  VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVD-TLCTNMLSDKEQLRDISSI 105

Query: 118 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 177
            L+     L     G         +        +    D  V  +A   ++ +       
Sbjct: 106 GLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL 165

Query: 178 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 237
           +     + +   L+  L  P  +V    +  +G++V          +    +  LL  L+
Sbjct: 166 LVNFHPS-ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELS 220

Query: 238 QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 294
           +N   S  +     I+ I+    ++I   +E  II  +V      + E+++    A 
Sbjct: 221 KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEK-IIPLVVKFCNVDDDELREYCIQAF 276

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 2/108 (1%)

Query: 54   VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH 113
            ++     +P     L S +   R   V A+     D P+  D +L N   +    +  E 
Sbjct: 957  LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--CIGDFLKTLED 1014

Query: 114  AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT 161
              L++ R A  T ++    KP  + +     LP L        + +  
Sbjct: 1015 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIRE 1062

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 36/252 (14%), Positives = 89/252 (35%), Gaps = 29/252 (11%)

Query: 148 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 207
           LE++  S+D +    A   L       + K+    E  V   +++LL   +  V   A++
Sbjct: 9   LEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67

Query: 208 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-----NVNQ 262
            +G +V    ++   +     +  L   +  + K+ ++  +   +  +        + + 
Sbjct: 68  CLGPLV--SKVKEYQVE--TIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSA 122

Query: 263 IQAIIEAGIIGPLVNLLLNAE-FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 321
           + A +   I G L + +   E   ++ EA   +++  S      + F  S   +  L   
Sbjct: 123 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS--ILTCLLPQ 180

Query: 322 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 381
           L  P   +    +  L +++ +           G  +F   I+       +  L  +D+ 
Sbjct: 181 LTSPRLAVRKRTIIALGHLVMS----------CGNIVFVDLIEHL-----LSELSKNDSM 225

Query: 382 EIYEKAVKILET 393
                 ++ +  
Sbjct: 226 STTRTYIQCIAA 237

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 47/367 (12%), Positives = 92/367 (25%), Gaps = 24/367 (6%)

Query: 1   MCCFDLRFECILISLFVDQF-FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHG 59
               D+        L                  V+      L  IA G  +     +   
Sbjct: 378 AAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL 437

Query: 60  AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 119
            +P  ++ LS     VR    W L   A               +  LL +  +  K  + 
Sbjct: 438 -IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQ 495

Query: 120 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI- 178
             A    +         L       L  L         + L     A+  L+D     + 
Sbjct: 496 EAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN 555

Query: 179 QAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDM---------------QTQ 221
           +      + P L++           L P L  + ++ T                     Q
Sbjct: 556 KPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQ 615

Query: 222 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLL 280
             +    L        +   K     A   +S +  G    I+ ++  + I+  +   + 
Sbjct: 616 KTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ 675

Query: 281 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 340
           +   E+++ +   + + T          +     +  L   LN     +       +  I
Sbjct: 676 DKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEI 733

Query: 341 LKAGEAE 347
                 E
Sbjct: 734 SIQMGIE 740

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 7/232 (3%)

Query: 61  VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG---ALMPLLAQFNEHAKLS 117
           +P    LL S   +  E A  AL  +  DS +  D  + +     ++P   QF +H+   
Sbjct: 128 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 187

Query: 118 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 177
           +  +A   ++ F   + Q L          L  L    + EV  + C AL  L +   D+
Sbjct: 188 IRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 247

Query: 178 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 237
           +   +   +   +++  +    +V   AL      +T  +      +  + LP L+ +L 
Sbjct: 248 LLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAEQPICKDVLVRHLPKLIPVLV 303

Query: 238 QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 289
              K S                +   +  I             + E  I++E
Sbjct: 304 NGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEE 355

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 27/285 (9%), Positives = 61/285 (21%), Gaps = 46/285 (16%)

Query: 65  VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 124
            RLL       R  +   L    G               + L  +F             +
Sbjct: 25  FRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKNYIRRDIGAF 72

Query: 125 TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 184
            L      K     +        L  +  ++    +          S     K   +   
Sbjct: 73  ILGQIKICK-----KCEDNVFNILNNMALNDKSACVRATAI----ESTAQRCKKNPIYSP 123

Query: 185 GVCPRLVELLRHPSPSVLIPALRTVG----------NIVTGDDMQTQCIINHQALPCLLD 234
            +  +        S +V       +            I    D              +  
Sbjct: 124 KIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININK 183

Query: 235 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 294
               + +    +        +    +  +    +  ++  L + L      +  +   A 
Sbjct: 184 YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAA 241

Query: 295 SNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLE 338
                         L  +  +  L  +L    D  I+T  ++ L+
Sbjct: 242 GE------------LGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 274

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 23/248 (9%), Positives = 56/248 (22%), Gaps = 37/248 (14%)

Query: 33  VQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 92
            +  +A  L                  AV + +   S      R+   + LG +      
Sbjct: 35  KRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 83

Query: 93  CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 152
             +          L           +   A  + +  C+  P      +   +   +   
Sbjct: 84  EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITA 133

Query: 153 HSNDDEVLTDACWALSYLSDGT-----------NDKIQAVIEAGVCPRLVELLRHPSPSV 201
                 V     +A+S ++D              +       A                 
Sbjct: 134 FDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCF 193

Query: 202 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 261
           +         +     +      + + L  L D L +N   ++  +       +  G+  
Sbjct: 194 VEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN---TVYDDIIEAAGEL--GDKT 248

Query: 262 QIQAIIEA 269
            +  +   
Sbjct: 249 LLPVLDTM 256

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 29/286 (10%), Positives = 80/286 (27%), Gaps = 43/286 (15%)

Query: 61  VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 120
             +    + SP  ++R  +   L  ++ D+                     +       R
Sbjct: 7   AQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGR 58

Query: 121 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 180
                                  A   L+  + S D              +     ++  
Sbjct: 59  IL---------------------AALTLKNELVSKDSVK-------TQQFAQRWITQVSP 90

Query: 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 240
             +  +    +  L    P +   A + +  I   +          + +  ++D      
Sbjct: 91  EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW---PELMKIMVDNTGAEQ 147

Query: 241 KKSIKKEACWTISNITAGNVNQIQAIIEA--GIIGPLVNLLLNAEF--EIKKEAAWAISN 296
            +++K+ +   +  +      Q QA++ +   I+  +V    + E    ++  A  A+++
Sbjct: 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALAD 207

Query: 297 ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 342
           +     N   +       ++ +C+     D  +       L  I+ 
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 21/151 (13%), Positives = 48/151 (31%), Gaps = 9/151 (5%)

Query: 21  FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 80
               +      A++  A   L  +     +          +P  + +   P    R   +
Sbjct: 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMTTL 501

Query: 81  WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 140
           + +  ++    +  D+   +  ++P + +       ++  N   +L            + 
Sbjct: 502 FCINVLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS 557

Query: 141 TRPALPALERLIHSNDDEVLTDACWALSYLS 171
                P LE+L    D +V   A  AL+ LS
Sbjct: 558 E--VKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 23/212 (10%), Positives = 55/212 (25%), Gaps = 12/212 (5%)

Query: 1   MCCFDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGA 60
                     I                     V+      +  +A           D   
Sbjct: 386 NLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKL 442

Query: 61  VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 120
             + +  L      +RE A   L  +     K      ++  ++P +   +         
Sbjct: 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRM 498

Query: 121 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 180
              + ++       Q +  +    LP + R+       V  +   +L  +    ++    
Sbjct: 499 TTLFCINVLSEVCGQDITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--- 553

Query: 181 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 212
            +++ V P L +L +     V   A   +  +
Sbjct: 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 28/164 (17%)

Query: 58  HGAVPIFVRLLSSPTDDVREQAVWALG-----NVAGDSPKCRDLVLSNGALMPLLAQFNE 112
           +  V     L+    + VR    + L       +  D       +     L         
Sbjct: 65  YSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFD-EDREVRITVADRLPL------- 116

Query: 113 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC--WALSYL 170
                M  +  + +  +   +  P           L R +   D +V            L
Sbjct: 117 EQLEQMAADRDYLVRAYVVQRIPP---------GRLFRFMRDEDRQVRKLVAKRLPEESL 167

Query: 171 SDGTNDKI----QAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 210
              T D      + V        L+ELL  P  +V + A+    
Sbjct: 168 GLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS 211

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 34/140 (24%)

Query: 68  LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 127
           ++     VR     AL  +  +            A  PLL   +          A    +
Sbjct: 1   MADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGN 48

Query: 128 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 187
                           A+  L +L+  +   V + A  +L  +                 
Sbjct: 49  FQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERV-----------R 86

Query: 188 PRLVELLRHPSPSVLIPALR 207
             + +L    +      A+ 
Sbjct: 87  AAMEKLAETGTGFARKVAVN 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	431
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.84
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.81
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.7
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.62
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.61
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.53
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.48
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.34
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.24
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.17
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.17
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.17
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.14
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.02
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.0
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.0
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.95
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.84
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.6
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.48
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.44
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.48
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.9
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.78
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.74
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.34
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.28
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.94
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.27
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	91.48
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	91.35
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	90.91
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	89.38
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	88.56
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	86.4
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	86.33
d1w9ca_	321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	83.51
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	82.98

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-43  Score=338.39  Aligned_cols=389  Identities=57%  Similarity=0.866  Sum_probs=352.5

Q ss_pred             cchhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 014088            4 FDLRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL   83 (431)
Q Consensus         4 ~~~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L   83 (431)
                      .+..++.|++|.++.     +|..+.++.++..|+++|.+++..++.....+.+.|+++.++.+|.+++.+++..++|+|
T Consensus       112 i~~ii~~g~i~~Lv~-----~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L  186 (503)
T d1wa5b_         112 IDVVIQAGVVPRLVE-----FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWAL  186 (503)
T ss_dssp             HHHHHHTTCHHHHHH-----TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHHHCCChHHHHH-----HHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHH
Confidence            345678899999988     665566788999999999999998888899999999999999999999999999999999


Q ss_pred             HHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHH
Q 014088           84 GNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTD  162 (431)
Q Consensus        84 ~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~  162 (431)
                      +|++.+.+..+..+...|++++++.++ .+.+..+++.++|+|++++.+. +........+++|.+..++.+.+++++..
T Consensus       187 ~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~  265 (503)
T d1wa5b_         187 GNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD  265 (503)
T ss_dssp             HHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHH
T ss_pred             HHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            999999999999999999999999999 6778899999999999999876 55556667899999999999999999999


Q ss_pred             HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchh
Q 014088          163 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK  242 (431)
Q Consensus       163 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  242 (431)
                      +++++.+++.+.++....+.+.|+++.++.++.+++..++..++.++++++...+.....+++.++++.+..+++++ ++
T Consensus       266 ~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~  344 (503)
T d1wa5b_         266 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KE  344 (503)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CH
T ss_pred             HHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CH
Confidence            99999999998888888899999999999999999999999999999999998888888888999999999999998 99


Q ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHHh
Q 014088          243 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCD  320 (431)
Q Consensus       243 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~  320 (431)
                      .++..++|+++|++.++++....+++.|+++.+++++.+++.+++.+|+|+|.|++..+  .++....+.+.|+++.|++
T Consensus       345 ~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~  424 (503)
T d1wa5b_         345 NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD  424 (503)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHH
Confidence            99999999999999988999999999999999999999999999999999999998744  3467788899999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 014088          321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  400 (431)
Q Consensus       321 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~e~~  400 (431)
                      +++..++++...++.+|.++++.++...... ....+.+...+.+.|+++.|+.|++|+++++++.|.++|++||++|||
T Consensus       425 ~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~-~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         425 LLEIADNRIIEVTLDALENILKMGEADKEAR-GLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHhhhh-cccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            9999999999999999999998766543221 133467899999999999999999999999999999999999988765

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-40  Score=316.76  Aligned_cols=379  Identities=48%  Similarity=0.802  Sum_probs=344.2

Q ss_pred             hhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 014088            6 LRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN   85 (431)
Q Consensus         6 ~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~   85 (431)
                      ..++.|++|.+++     +|.+++++++|..|+++|.+++..+++.+..+++.|+++.++.+|+++++.+++.++++|+|
T Consensus        51 ~i~~~g~i~~Lv~-----lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~n  125 (434)
T d1q1sc_          51 NIIRAGLIPKFVS-----FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGN  125 (434)
T ss_dssp             HHHHTTCHHHHHH-----HTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHH-----HHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHH
Confidence            4567899999998     66666778999999999999999888999999999999999999999999999999999999


Q ss_pred             hcCCChHHHHHHHHcCChHHHHHHhcccc----chhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHH
Q 014088           86 VAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVL  160 (431)
Q Consensus        86 l~~~~~~~~~~i~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~  160 (431)
                      ++.+.+..+..+.+.++++.++.++....    .....+.++|++.+++... .........+++|.+..++++++++++
T Consensus       126 l~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~  205 (434)
T d1q1sc_         126 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL  205 (434)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchh
Confidence            99999989999999999999999995432    2356678899999999886 444555668899999999999999999


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc
Q 014088          161 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY  240 (431)
Q Consensus       161 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~  240 (431)
                      ..+++++.+++.+.+.....+...|+++.++.++.++++.++..+++++++++..++.....+++.++++.+.+++.++ 
T Consensus       206 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-  284 (434)
T d1q1sc_         206 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-  284 (434)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-
T ss_pred             hhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhccc-
Confidence            9999999999998877777788889999999999999999999999999999998888888889999999999999998 


Q ss_pred             hhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHh
Q 014088          241 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  320 (431)
Q Consensus       241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~  320 (431)
                      +++++..++|++++++..+.+....+.+.|+++.+++++.+++.+++..|+++|.+++...+++....+.+.|+++.|++
T Consensus       285 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~  364 (434)
T d1q1sc_         285 KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN  364 (434)
T ss_dssp             SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred             chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHH
Confidence            89999999999999999888888999999999999999999999999999999999999888888888999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          321 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       321 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      +++.++++++..++++|.++++..+...      ..+.++..+.+.|+++.|+.|++|+|+++++.|.++|++||+
T Consensus       365 ll~~~d~~~~~~~l~~l~~ll~~~~~~~------~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         365 LLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhcC------CcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999998766432      235588899999999999999999999999999999999995

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.6e-32  Score=255.25  Aligned_cols=358  Identities=24%  Similarity=0.353  Sum_probs=308.4

Q ss_pred             hhccCCChHHHHHHHHHHHHHcCCC-hHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcC
Q 014088           24 CFFSCCFGAVQFEAAWALTNIASGT-SENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNG  101 (431)
Q Consensus        24 ~L~~s~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  101 (431)
                      .| .+++++.+..|+.++.++.... ....+.+++.|++|.|+++|++ +++.++..++++|.+++...+..+..+.+.|
T Consensus        21 ~l-~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~   99 (434)
T d1q1sc_          21 GI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG   99 (434)
T ss_dssp             HH-TSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HH-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhcc
Confidence            44 5778999999999999986422 2235778899999999999976 5688999999999999998888888999999


Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhHhhhHHHHHHhhcCCC-----hHHHHHHHHHHHHhccCCh
Q 014088          102 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSND-----DEVLTDACWALSYLSDGTN  175 (431)
Q Consensus       102 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~  175 (431)
                      +++.++.+| .+++.++++.++++|++++.+.+.. ......++++.++.++...+     ......+++++.+++.+..
T Consensus       100 ~i~~l~~~L-~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (434)
T d1q1sc_         100 AIPAFISLL-ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN  178 (434)
T ss_dssp             HHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCT
T ss_pred             chhhhhhcc-ccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhccc
Confidence            999999999 7788999999999999999876433 33445788999999988653     3456778899999987755


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh
Q 014088          176 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  255 (431)
Q Consensus       176 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  255 (431)
                      .........++++.+..++.+++++++..+++++.+++...+.....+...++++.+++++.++ +..++..++++++++
T Consensus       179 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~-~~~~~~~al~~l~~l  257 (434)
T d1q1sc_         179 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNI  257 (434)
T ss_dssp             TCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccc-hhhhhhchhhhhhhH
Confidence            4333344557889999999999999999999999999988877777788899999999999999 999999999999999


Q ss_pred             hcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 014088          256 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE  335 (431)
Q Consensus       256 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~  335 (431)
                      +..+++....+++.|+++.++.++.+++.+++..|+++|.+++... ++....+.+.|+++.++.++..++++++..+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~  336 (434)
T d1q1sc_         258 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW  336 (434)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhcccc-chhHHHHhhhhhHHHHHHHHhccChHHHHHHHH
Confidence            9988888999999999999999999999999999999999998854 577788889999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          336 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       336 ~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      +|.+++.......           ...+.+.|+++.|..++.++++++...+.++|..++.
T Consensus       337 ~l~nl~~~~~~~~-----------~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~  386 (434)
T d1q1sc_         337 AITNYTSGGTVEQ-----------IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  386 (434)
T ss_dssp             HHHHHHHHSCHHH-----------HHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHH-----------HHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999998765432           4556678999999999999999999999999988775

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-31  Score=257.77  Aligned_cols=358  Identities=23%  Similarity=0.343  Sum_probs=313.0

Q ss_pred             ccCCChHHHHHHHHHHHHHcC-CChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088           26 FSCCFGAVQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  103 (431)
Q Consensus        26 ~~s~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  103 (431)
                      ..+++.+.+..|+..+.++.. ......+.+++.|++|.|+++++. .++.++..|+|+|++++...+.....+...|++
T Consensus        85 ~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i  164 (503)
T d1wa5b_          85 LNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV  164 (503)
T ss_dssp             HSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred             hcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCh
Confidence            357788999999999998764 334456788999999999999986 578899999999999999888888889999999


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088          104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  182 (431)
Q Consensus       104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  182 (431)
                      +.++.+| .+++.+++..++|+|+|++...+. .......++++.++.++.+.+++++..++|++.+++.+.........
T Consensus       165 ~~l~~lL-~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~  243 (503)
T d1wa5b_         165 PLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV  243 (503)
T ss_dssp             HHHHHHH-HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred             HHHHHHh-cCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHH
Confidence            9999999 678899999999999999987633 33444578999999999999999999999999999976543333344


Q ss_pred             HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHH
Q 014088          183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ  262 (431)
Q Consensus       183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  262 (431)
                      ..++++.+..++.+.+++++..+++++.+++...+.....+++.++++.++.++.++ +..++..++.+++|++.++...
T Consensus       244 ~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~al~~l~nl~~~~~~~  322 (503)
T d1wa5b_         244 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQ  322 (503)
T ss_dssp             HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCC-chhhhhhHHHHHHHHHHHHHHH
Confidence            558999999999999999999999999999998887888889999999999999999 9999999999999999988888


Q ss_pred             HHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088          263 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  342 (431)
Q Consensus       263 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~  342 (431)
                      ...+++.|+++.+..++.++++.++..++|+++|++.. .+.....+.+.++++.+++++...+.+++..++++|.+++.
T Consensus       323 ~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~-~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~  401 (503)
T d1wa5b_         323 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS  401 (503)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence            88999999999999999999999999999999999875 45788888899999999999999999999999999999998


Q ss_pred             hhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088          343 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  395 (431)
                      .......         ....+.+.|+++.+..++.+.++++...+..+|..++
T Consensus       402 ~~~~~~~---------~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll  445 (503)
T d1wa5b_         402 GGLQRPD---------IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL  445 (503)
T ss_dssp             HTTTCTH---------HHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             cccccHH---------HHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            6644321         3566778999999999999899999988888887765

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-29  Score=246.21  Aligned_cols=367  Identities=17%  Similarity=0.148  Sum_probs=307.6

Q ss_pred             hhhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 014088            6 LRFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN   85 (431)
Q Consensus         6 ~~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~   85 (431)
                      ..++.|++|.++.      +.++++++++..|+++|.+++.+++..+..+.+.|+++.|+.+|+++++.++..++++|.+
T Consensus        96 ~i~~~g~i~~Li~------lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  169 (529)
T d1jdha_          96 AIFKSGGIPALVK------MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI  169 (529)
T ss_dssp             HHHHTTHHHHHHH------HTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHH------HhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHH
Confidence            3467789999999      5567889999999999999999888889999999999999999999999999999999999


Q ss_pred             hcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHH
Q 014088           86 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACW  165 (431)
Q Consensus        86 l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  165 (431)
                      ++..++..+..+...|+++.++.++..+.+..++..+++++.+++.+..........++++.+..++.+++.+++..+++
T Consensus       170 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~  249 (529)
T d1jdha_         170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW  249 (529)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhh
Confidence            99888888899999999999999997777788999999999999987555455556889999999999999999999999


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhH
Q 014088          166 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSI  244 (431)
Q Consensus       166 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v  244 (431)
                      ++.+++......   ....++++.|+.++.+++..++..++++|++++..++.....+.+.++++.++..+... ..+.+
T Consensus       250 ~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~  326 (529)
T d1jdha_         250 TLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI  326 (529)
T ss_dssp             HHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhH
Confidence            999998654422   22247889999999999999999999999999988888888888999999999988533 25788


Q ss_pred             HHHHHHHHHHhhcCC---HHHHHHHHHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCC------------------
Q 014088          245 KKEACWTISNITAGN---VNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGS------------------  302 (431)
Q Consensus       245 ~~~a~~~L~nl~~~~---~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~------------------  302 (431)
                      +..+++++.+++...   ......+...+.++.++.++..+ +..++..+++++.+++....                  
T Consensus       327 ~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL  406 (529)
T d1jdha_         327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL  406 (529)
T ss_dssp             HHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHH
Confidence            999999999999642   23344556788899999988765 45677778888877765431                  


Q ss_pred             -------------------------------------------HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 014088          303 -------------------------------------------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN  339 (431)
Q Consensus       303 -------------------------------------------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~  339 (431)
                                                                 +..+..+.+.|+++.|++++.++++.++..++++|.+
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~  486 (529)
T d1jdha_         407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE  486 (529)
T ss_dssp             HHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                                                       1112234467888999999999999999999999999


Q ss_pred             HHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 014088          340 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  394 (431)
Q Consensus       340 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  394 (431)
                      +....+             .+..+.+.|+++.|.+|++++|+++++.|..+|.++
T Consensus       487 L~~~~~-------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         487 LAQDKE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HTTSHH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HhcChh-------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            875543             366788999999999999999999999999998764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-28  Score=235.75  Aligned_cols=375  Identities=19%  Similarity=0.184  Sum_probs=303.5

Q ss_pred             hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088           11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS   90 (431)
Q Consensus        11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   90 (431)
                      |++|.++.     +|..+++++++..|+.+|.+++. +++.+..+++.|+++.|+.+|+++++.++..|+++|++++.+.
T Consensus        59 ~~v~~l~~-----~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~  132 (529)
T d1jdha_          59 QMVSAIVR-----TMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ  132 (529)
T ss_dssp             HHHHHHHH-----HHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHH-----HHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc
Confidence            56666666     77777788999999999999986 7888999999999999999999999999999999999999888


Q ss_pred             hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCChhhHhhhHHHHHHhhcCC-ChHHHHHHHHHHH
Q 014088           91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSN-DDEVLTDACWALS  168 (431)
Q Consensus        91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~  168 (431)
                      +..+..+.+.|+++.|+.++ ++++++++..++++|.+++.... ........+.++.++.++.+. +..++..+++++.
T Consensus       133 ~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~  211 (529)
T d1jdha_         133 EGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK  211 (529)
T ss_dssp             TTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             chhhhHHHhcCCchHHHHHH-HccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHh
Confidence            87888899999999999999 77889999999999999998763 333344578899999999754 5789999999999


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHH
Q 014088          169 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA  248 (431)
Q Consensus       169 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  248 (431)
                      +++.+.+. ...+.+.|+++.+..++.+++..++..+++++.+++......   ....++++.|++++.++ +..++..|
T Consensus       212 ~ls~~~~~-~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~-~~~~~~~a  286 (529)
T d1jdha_         212 VLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSD-DINVVTCA  286 (529)
T ss_dssp             HHTTSTTH-HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCS-CHHHHHHH
T ss_pred             hhhccccc-cchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccc-cHHHHHHH
Confidence            99976654 456888899999999999999999999999999998654321   22346789999999988 89999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHcc--CCHhHHHHHHHHHHHhcCCCC--HHHHHHHHHCCChHHHHhhcCC
Q 014088          249 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLLNC  324 (431)
Q Consensus       249 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~--~~~~~~l~~~~~l~~L~~ll~~  324 (431)
                      +++|+|++..+++....+.+.++++.++..+..  +.++++..++++|.+++....  ......+...+.++.++++++.
T Consensus       287 ~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~  366 (529)
T d1jdha_         287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP  366 (529)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred             HHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhc
Confidence            999999999888988899999999999998853  467899999999999987653  2234455678999999999986


Q ss_pred             CC-HHHHHHHHHHHHHHHHhhhhhhhcCCCCCc-----------------------------------------------
Q 014088          325 PD-PRIVTVCLEGLENILKAGEAEKNMGNTGGV-----------------------------------------------  356 (431)
Q Consensus       325 ~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~-----------------------------------------------  356 (431)
                      ++ ..+...+++++.++....+......+.+..                                               
T Consensus       367 ~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~l  446 (529)
T d1jdha_         367 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL  446 (529)
T ss_dssp             TCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHH
Confidence            54 466777777887765433221110000000                                               


Q ss_pred             ---chHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 014088          357 ---NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  397 (431)
Q Consensus       357 ---~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  397 (431)
                         ...+..+.+.|+++.|..++.+++++++..|..+|..+..+
T Consensus       447 a~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  490 (529)
T d1jdha_         447 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             TTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             ccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence               01134456788899999999999999999999999887543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-27  Score=224.45  Aligned_cols=368  Identities=16%  Similarity=0.165  Sum_probs=278.2

Q ss_pred             hhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014088           11 ILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS   90 (431)
Q Consensus        11 g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   90 (431)
                      +.+|.+|.      +.+++++++|..|+++|+++|.++++.+..+.+.|+||.|+++|+++++.++..|+++|.+++.++
T Consensus         2 ~~ip~lv~------~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~   75 (457)
T d1xm9a1           2 LTIPKAVQ------YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS   75 (457)
T ss_dssp             CCHHHHHH------HHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred             CCHHHHHH------HhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            45777777      456788999999999999999989999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhh----------------cC
Q 014088           91 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----------------HS  154 (431)
Q Consensus        91 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL----------------~~  154 (431)
                      ++.+..+.+.|+++.++.++.+..+++++..++++|++++.......... ...++.+...+                ..
T Consensus        76 ~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  154 (457)
T d1xm9a1          76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI-ADALPVLADRVIIPFSGWCDGNSNMSREV  154 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH-HHHHHHHHHHTTHHHHTCC---------C
T ss_pred             HHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHH-hcccHHHHHHHHhhhhhhhcchhhhhccc
Confidence            88999999999999999999778889999999999999998754333323 33444433332                34


Q ss_pred             CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC------CCcccHHHHHHHHhHhhc--------------
Q 014088          155 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH------PSPSVLIPALRTVGNIVT--------------  214 (431)
Q Consensus       155 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~--------------  214 (431)
                      .+..++..+++++.+++...+.........|+++.++.++.+      ........+...+.....              
T Consensus       155 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  234 (457)
T d1xm9a1         155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE  234 (457)
T ss_dssp             CCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence            578899999999999998876655545556788888887743      112222222222221110              


Q ss_pred             ------------------------------------CChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC
Q 014088          215 ------------------------------------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  258 (431)
Q Consensus       215 ------------------------------------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  258 (431)
                                                          ........+...++++.+..++....++.++..+.+++.+++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~  314 (457)
T d1xm9a1         235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS  314 (457)
T ss_dssp             HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhc
Confidence                                                00011111223345677777776665788899999999999874


Q ss_pred             CHH-----HHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CCH
Q 014088          259 NVN-----QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDP  327 (431)
Q Consensus       259 ~~~-----~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~  327 (431)
                      ...     ....+.+.++++.|++++.+++++++..+++++.+++...  +....+ ..++++.++.++..      .+.
T Consensus       315 ~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~--~~~~~i-~~~~i~~li~~L~~~~~~~~~~~  391 (457)
T d1xm9a1         315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVM-GNQVFPEVTRLLTSHTGNTSNSE  391 (457)
T ss_dssp             SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHH-HHHTHHHHHHTTTSCCSCSTTHH
T ss_pred             cccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh--hHHHHH-HHhhHHHHHHHHhccccCcCCcH
Confidence            221     2334446789999999999999999999999999998764  344443 34678999988853      235


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCCC
Q 014088          328 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILETYWVEEDE  400 (431)
Q Consensus       328 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~e~~  400 (431)
                      +++..++.+|.+++.....            .+..+.+.|+++.|..+.. ++++.+++.|..+|.++|.+++-
T Consensus       392 ~v~~~a~~~L~~l~~~~~~------------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~  453 (457)
T d1xm9a1         392 DILSSACYTVRNLMASQPQ------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCTH------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHHHHHHHHHHHhcCCHH------------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhh
Confidence            7889999999999865433            3667888999999999964 56899999999999999987653

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.2e-19  Score=158.97  Aligned_cols=197  Identities=17%  Similarity=0.171  Sum_probs=175.4

Q ss_pred             CCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           28 CCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        28 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      +.+.+.+..|+.+|.+++. +.+++..+...|+++.++. +++++++.++..|+++|++++.+++..+..+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            4456889999999999996 6788888999999999886 7888999999999999999999999899999999999999


Q ss_pred             HHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhC
Q 014088          107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG  185 (431)
Q Consensus       107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  185 (431)
                      +.++.++.++.++..++++|++++.+.+. .......++++.+++++++++.+++..++++|.+++...+.....+.+.|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            99997778899999999999999988743 33445688999999999999999999999999999988777778899999


Q ss_pred             cHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhh
Q 014088          186 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  225 (431)
Q Consensus       186 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  225 (431)
                      +++.|+.++.++++.++..++++|++++..++........
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999999887766655543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.2e-20  Score=171.62  Aligned_cols=326  Identities=16%  Similarity=0.167  Sum_probs=233.6

Q ss_pred             hhhhhhhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q 014088            7 RFECILISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGN   85 (431)
Q Consensus         7 ~~~~g~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~   85 (431)
                      .++.|++|.+++      +.+++++++|..|+++|.+++.++++.+..+.+.|+++.++.++.+ .++.++..++++|.+
T Consensus        40 i~~~g~i~~Lv~------lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~  113 (457)
T d1xm9a1          40 VYQLGGICKLVD------LLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWN  113 (457)
T ss_dssp             HHHTTHHHHHHH------HTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHCCcHHHHHH------HHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHH
Confidence            367799999999      6678889999999999999998899999999999999999998875 778999999999999


Q ss_pred             hcCCChHHHHHHHHcCChHHHHHHh---------------ccccchhHHHHHHHHHHHhhcCCCCCChh-hHhhhHHHHH
Q 014088           86 VAGDSPKCRDLVLSNGALMPLLAQF---------------NEHAKLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALE  149 (431)
Q Consensus        86 l~~~~~~~~~~i~~~~~i~~l~~~l---------------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~i~~L~  149 (431)
                      ++..... +...... +++.++..+               ....+..++..+++++.+++.+....... ...++++.++
T Consensus       114 l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~  191 (457)
T d1xm9a1         114 LSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLM  191 (457)
T ss_dssp             HHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHH
T ss_pred             HHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHH
Confidence            9976543 3333332 334444433               13447889999999999998775332222 2356788888


Q ss_pred             HhhcCC------ChHHHHHHHHHHHHhcc--------------------------------------------------C
Q 014088          150 RLIHSN------DDEVLTDACWALSYLSD--------------------------------------------------G  173 (431)
Q Consensus       150 ~lL~~~------~~~v~~~a~~~L~~l~~--------------------------------------------------~  173 (431)
                      .++++.      .......+...+.+...                                                  .
T Consensus       192 ~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (457)
T d1xm9a1         192 AYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEET  271 (457)
T ss_dssp             HHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCS
T ss_pred             HHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhh
Confidence            777531      11111112111111100                                                  0


Q ss_pred             ChHHHHHHHHhCcHHHHHHhcCC-CCcccHHHHHHHHhHhhcCChh-----hhHHHhhcCChHHHHHHhcccchhhHHHH
Q 014088          174 TNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM-----QTQCIINHQALPCLLDLLTQNYKKSIKKE  247 (431)
Q Consensus       174 ~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~-----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~  247 (431)
                      .......+...++++.++.++.. .++.++..+.+++.+++.....     ....+.+.++++.+++++.++ ++.++..
T Consensus       272 ~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~  350 (457)
T d1xm9a1         272 NPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRS  350 (457)
T ss_dssp             SCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHH
T ss_pred             hhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHH
Confidence            00000112223455666666644 4567788889999998865432     233445779999999999998 9999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC------CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 014088          248 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL  321 (431)
Q Consensus       248 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l  321 (431)
                      +++++++++.. ++....+. .+.++.++.++...      +.+++..|+.+|.+++... ++..+.+.+.|+++.|+.+
T Consensus       351 a~~~l~~La~~-~~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~i~~L~~l  427 (457)
T d1xm9a1         351 GASLLSNMSRH-PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ-PQLAKQYFSSSMLNNIINL  427 (457)
T ss_dssp             HHHHHHHHHTS-GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHHHhhC-hhHHHHHH-HhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHH
Confidence            99999999976 44444444 46789999998643      3579999999999999765 4777888889999999999


Q ss_pred             cCCC-CHHHHHHHHHHHHHHHHhh
Q 014088          322 LNCP-DPRIVTVCLEGLENILKAG  344 (431)
Q Consensus       322 l~~~-~~~v~~~al~~L~~l~~~~  344 (431)
                      +++. ++.+++.|..+|.+++.+.
T Consensus       428 ~~~~~~~~~~~aA~~~L~~L~~~~  451 (457)
T d1xm9a1         428 CRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HhCCCCHHHHHHHHHHHHHHHcCH
Confidence            8764 6789999999999997544

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.9e-19  Score=153.04  Aligned_cols=229  Identities=17%  Similarity=0.168  Sum_probs=187.5

Q ss_pred             CChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHH
Q 014088          155 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL  233 (431)
Q Consensus       155 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~  233 (431)
                      .+.+.+..|+.+|.+++.+.+ ....+...|+++.++. ++.+++++++..++++|++++.+++.....+.+.++++.|+
T Consensus        29 ~~~~~~~~Al~~L~~L~~~~d-~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          29 ADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            467789999999999997654 4566888899998875 67889999999999999999998888888888999999999


Q ss_pred             HHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 014088          234 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG  313 (431)
Q Consensus       234 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  313 (431)
                      +++.+..++.++..+++++++++.+++.....+.+.|+++.|++++.+++..++..++++|.+++... ++....+.+.|
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~  186 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHTT
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhcc-HHHHHHHHHhh
Confidence            99976547899999999999999998998999999999999999999999999999999999998754 36677788999


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHH-hhcc---HHHHHHh--hcCCCHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID-DAEG---LEKIENL--QSHDNTEIYEKA  387 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~---~~~l~~l--~~~~~~~v~~~a  387 (431)
                      +++.|+.++++++++++..++++|.++........           ..... +.+.   +..+..+  ......+..+.+
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~-----------~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~  255 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV-----------RECREPELGLEELLRHRCQLLQQHEEYQEELEFC  255 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH-----------HHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH-----------HHHHHhhhhHHHHHHHHHHhccchHHHHHHHHHH
Confidence            99999999999999999999999999987554432           11111 1111   2222222  223456667888


Q ss_pred             HHHHHHhcC
Q 014088          388 VKILETYWV  396 (431)
Q Consensus       388 ~~~l~~~~~  396 (431)
                      ..+++.+|.
T Consensus       256 ~~ll~~~~~  264 (264)
T d1xqra1         256 EKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            899998884

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.9e-16  Score=151.23  Aligned_cols=337  Identities=12%  Similarity=0.108  Sum_probs=243.5

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHH
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLS   99 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~   99 (431)
                      +.+.+ .++++.+|..++.+|++++..   .........+++.+..+++++++.+|..++..+..++..- ...+....-
T Consensus       247 l~~~~-~D~~~~Vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~  322 (588)
T d1b3ua_         247 LRQAA-EDKSWRVRYMVADKFTELQKA---VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM  322 (588)
T ss_dssp             HHHHH-TCSSHHHHHHHHHTHHHHHHH---HCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred             HHHhc-ccccHHHHHHHHHhHHHHHHH---hhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence            33344 456678999999999888642   1122333467899999999999999999999999887432 112222223


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088          100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ  179 (431)
Q Consensus       100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  179 (431)
                      ...++.+...+ .+.++.++..++.++..++...  ........++|.+..++++.+++++..++.++..+...-...  
T Consensus       323 ~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~--~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~--  397 (588)
T d1b3ua_         323 SQILPCIKELV-SDANQHVKSALASVIMGLSPIL--GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--  397 (588)
T ss_dssp             HTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH--CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--
T ss_pred             HHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhcc--chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchh--
Confidence            34566677776 7788999999888887776431  112334668899999999999999999998887776432211  


Q ss_pred             HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-
Q 014088          180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-  258 (431)
Q Consensus       180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-  258 (431)
                       .....+++.+...+.+.++.+|..++.+++.++.....   ..+...+.+.+..++.++ ...+|..|+++++.++.. 
T Consensus       398 -~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~  472 (588)
T d1b3ua_         398 -QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKF  472 (588)
T ss_dssp             -HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHH
T ss_pred             -hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh---HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHh
Confidence             11225678888889999999999999999988753111   112224567788888888 899999999999999862 


Q ss_pred             CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088          259 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  338 (431)
Q Consensus       259 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~  338 (431)
                      .++.    ....+++.+.+++.++++.+|..++.++..+......    ......+++.+..+++++.+.+|..++++|.
T Consensus       473 ~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~----~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~  544 (588)
T d1b3ua_         473 GKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSLQ  544 (588)
T ss_dssp             CHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCh----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            2221    2334788899999999999999999999988653221    2234458999999999999999999999999


Q ss_pred             HHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 014088          339 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  394 (431)
Q Consensus       339 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  394 (431)
                      .+....+...          +     +....+.+..++++++.+|+..|..+++.+
T Consensus       545 ~i~~~~~~~~----------~-----~~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         545 KIGPILDNST----------L-----QSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHGGGSCHHH----------H-----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHcCcHh----------H-----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            9876543211          1     123457788899999999999999999864

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.8e-15  Score=143.16  Aligned_cols=335  Identities=12%  Similarity=0.106  Sum_probs=242.2

Q ss_pred             hccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChH
Q 014088           25 FFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  104 (431)
Q Consensus        25 L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  104 (431)
                      +.+++++.+|..|+.++..++...+..   -....++|.+..+++++++.+|..++.+|++++....   ........++
T Consensus       211 l~~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~  284 (588)
T d1b3ua_         211 LASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVP  284 (588)
T ss_dssp             HHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHH
T ss_pred             HhcCCchhhHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhH
Confidence            344566788888888888776422211   1112368888889999999999999999999874211   1223345677


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhhcCCCCCC--hhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014088          105 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  182 (431)
Q Consensus       105 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  182 (431)
                      .+..++ .+.+++++..++..+..++..-....  ......++|.+...+.+.++.++..++.++..++..-...   ..
T Consensus       285 ~l~~ll-~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~---~~  360 (588)
T d1b3ua_         285 AFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NT  360 (588)
T ss_dssp             HHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HH
T ss_pred             HHHHHH-hccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchh---HH
Confidence            778878 77889999999999999988753322  2234678899999999999999999998888776432111   11


Q ss_pred             HhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC-CHH
Q 014088          183 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVN  261 (431)
Q Consensus       183 ~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~  261 (431)
                      ...+++.+...+.++++.++..++..+..+......  . .+...+++.+.+++.+. ++.+|..++.+++.++.. ..+
T Consensus       361 ~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~  436 (588)
T d1b3ua_         361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE  436 (588)
T ss_dssp             HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChH
Confidence            225678888999999999999988888777643211  1 11225678888999888 999999999999988751 111


Q ss_pred             HHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 014088          262 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  341 (431)
Q Consensus       262 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~  341 (431)
                      .    ....+.+.+..++.++...+|..|+++++.++...+++.    ....+++.+.+++++++...+..++.++..+.
T Consensus       437 ~----~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~  508 (588)
T d1b3ua_         437 F----FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLS  508 (588)
T ss_dssp             G----CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             h----HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            1    112345667778888899999999999999986544332    23347889999999999999999999999887


Q ss_pred             HhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          342 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      ......               ......++.+..+.+++.+.||..+.++|..++.
T Consensus       509 ~~~~~~---------------~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         509 EVCGQD---------------ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHHH---------------HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHcChH---------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            654321               1123467888899999999999999988887654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.9e-13  Score=138.37  Aligned_cols=361  Identities=16%  Similarity=0.160  Sum_probs=216.6

Q ss_pred             hhhhhhHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCh
Q 014088           12 LISLFVDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP   91 (431)
Q Consensus        12 ~~~~~v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~   91 (431)
                      ++|.++. .+.+.+ .++++..|+.|+.+++.++.+..+.....+ ..+++.++..++++++.+|..++|+|+.++....
T Consensus       392 il~~~l~-~l~~~l-~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  468 (888)
T d1qbkb_         392 LLPHILP-LLKELL-FHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV  468 (888)
T ss_dssp             SHHHHHH-HHHHTT-TSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHH-HHHHhh-ccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Confidence            3444333 344444 466789999999999999876543322211 1467888899999999999999999999874211


Q ss_pred             HHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014088           92 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  171 (431)
Q Consensus        92 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  171 (431)
                      .....-.-...++.++..+ .++++.++..|+++|.+++.............+++.+...+...+.+.+..+..++..++
T Consensus       469 ~~~~~~~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~  547 (888)
T d1qbkb_         469 SQPPDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA  547 (888)
T ss_dssp             SSCHHHHTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            1001112234677788877 677899999999999999865432222233344444444433322222221111111111


Q ss_pred             ---------------------------------------------c----C-----------------------------
Q 014088          172 ---------------------------------------------D----G-----------------------------  173 (431)
Q Consensus       172 ---------------------------------------------~----~-----------------------------  173 (431)
                                                                   .    .                             
T Consensus       548 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  627 (888)
T d1qbkb_         548 DSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ  627 (888)
T ss_dssp             HHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                                                         0    0                             


Q ss_pred             -------ChHHH-------------------HHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcC
Q 014088          174 -------TNDKI-------------------QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ  227 (431)
Q Consensus       174 -------~~~~~-------------------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  227 (431)
                             ..+..                   ..+....+++.+...+.+.++.++..++.+++.++..........++ .
T Consensus       628 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~  706 (888)
T d1qbkb_         628 PDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-D  706 (888)
T ss_dssp             TTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-H
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-H
Confidence                   00000                   00011123344445556667778888888888877654443333332 3


Q ss_pred             ChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--CHhHHHHHHHHHHHhcCCCCHHH
Q 014088          228 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQ  305 (431)
Q Consensus       228 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~  305 (431)
                      +++.+.+.+.++ ...++..|+|+++.++....+.....+. .+++.|+.+++++  ...++++++.+|+.++.......
T Consensus       707 ~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~  784 (888)
T d1qbkb_         707 FMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV  784 (888)
T ss_dssp             HHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHH
Confidence            667777888877 8899999999999998743333333333 3688899999876  45699999999999987553222


Q ss_pred             HHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHH
Q 014088          306 IKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIY  384 (431)
Q Consensus       306 ~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~  384 (431)
                      ...+  ..+++.++..+.. .+.+-+..+...++.+++.....-.       ..+..+      ++.+.. -..+.++++
T Consensus       785 ~~~l--~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~-------~~l~~~------~~~i~~-~~~~~~~~~  848 (888)
T d1qbkb_         785 APML--QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI-------QDFIFF------CDAVAS-WINPKDDLR  848 (888)
T ss_dssp             GGGG--GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTG-------GGHHHH------HHHHTT-CSSCCHHHH
T ss_pred             HhhH--HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHH-------HHHHHH------HHHHHh-cCCCCHHHH
Confidence            2222  2367777776654 5666688899999999976543210       001111      111211 234568888


Q ss_pred             HHHHHHHHHhc
Q 014088          385 EKAVKILETYW  395 (431)
Q Consensus       385 ~~a~~~l~~~~  395 (431)
                      .....+|..|-
T Consensus       849 ~~~~~~l~~~~  859 (888)
T d1qbkb_         849 DMFCKILHGFK  859 (888)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888887653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=6.6e-11  Score=102.95  Aligned_cols=251  Identities=16%  Similarity=0.155  Sum_probs=188.2

Q ss_pred             HHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 014088           20 FFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS   99 (431)
Q Consensus        20 ~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   99 (431)
                      .|+++|. ++++.+|..|+.+|+.+..  +         ..++.++.+++++++.+|..|+++|+.+...... ...   
T Consensus        23 ~L~~~L~-d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~~---   86 (276)
T d1oyza_          23 ELFRLLD-DHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-EDN---   86 (276)
T ss_dssp             HHHHHTT-CSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HHH---
T ss_pred             HHHHHhc-CCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ccc---
Confidence            3445554 7889999999999998754  1         3589999999999999999999999998754322 111   


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014088          100 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ  179 (431)
Q Consensus       100 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  179 (431)
                        .++.+...+.+++++.++..++.+|..++...+    ......++.+...+.+.++.++..++.+++.+..       
T Consensus        87 --~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-------  153 (276)
T d1oyza_          87 --VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------  153 (276)
T ss_dssp             --HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------
T ss_pred             --hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-------
Confidence              234556666588899999999999999986532    2234577888888899999999999888876532       


Q ss_pred             HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCC
Q 014088          180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  259 (431)
Q Consensus       180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  259 (431)
                          ...++.+..++...+..++..+..++..+......         ..+.+...+.+. +..++..+.++++.+..  
T Consensus       154 ----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~~~~--  217 (276)
T d1oyza_         154 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSYRKD--  217 (276)
T ss_dssp             -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHHTTC--
T ss_pred             ----HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccchhhh--
Confidence                24567788888888888888888888877655432         334567777777 89999999999887642  


Q ss_pred             HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHH
Q 014088          260 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLE  338 (431)
Q Consensus       260 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~~L~  338 (431)
                               ...++.|++.+.+  +.++..++++|+.+..            ...++.|..++.. ++.+++..|+.+|.
T Consensus       218 ---------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         218 ---------KRVLSVLCDELKK--NTVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             ---------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             ---------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence                     2367788888875  4688999999998853            2357777777765 57789999888874

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=6.4e-10  Score=96.47  Aligned_cols=255  Identities=16%  Similarity=0.132  Sum_probs=188.0

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 014088           58 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL  137 (431)
Q Consensus        58 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  137 (431)
                      ....+.|+++|+++++.+|..|+.+|+.+..  +.         .++.+++++ +++++.++..|+.+|..+......  
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--~~---------~~~~l~~~l-~d~~~~vr~~a~~aL~~l~~~~~~--   83 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG--QD---------AVRLAIEFC-SDKNYIRRDIGAFILGQIKICKKC--   83 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--HH---------HHHHHHHHH-TCSSHHHHHHHHHHHHHSCCCTTT--
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--Hh---------HHHHHHHHH-cCCCHHHHHHHHHHHHHhcccccc--
Confidence            4567889999999999999999999998853  21         468888888 788999999999999998644211  


Q ss_pred             hhhHhhhHHHH-HHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCC
Q 014088          138 FEQTRPALPAL-ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  216 (431)
Q Consensus       138 ~~~~~~~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  216 (431)
                         ....++.+ ..+++++++.++..++.+|.++....+....     ..++.+...+.++++.++..++.+++.+..  
T Consensus        84 ---~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          84 ---EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             ---HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             ---ccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence               12233333 3456788999999999999998865543322     356778888888888899888888876532  


Q ss_pred             hhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHH
Q 014088          217 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN  296 (431)
Q Consensus       217 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  296 (431)
                               ...++.+..++... +..++..+.++++........         ..+.+...+...+..++..+..++..
T Consensus       154 ---------~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDP-NGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccc-cchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccch
Confidence                     24577888888888 889999999999888776444         34456777788899999999999987


Q ss_pred             hcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh
Q 014088          297 ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ  376 (431)
Q Consensus       297 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~  376 (431)
                      +-.            ...++.|++.+++  +.++..++++|..+-   +                    ...++.|..++
T Consensus       215 ~~~------------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig---~--------------------~~~~~~L~~~l  257 (276)
T d1oyza_         215 RKD------------KRVLSVLCDELKK--NTVYDDIIEAAGELG---D--------------------KTLLPVLDTML  257 (276)
T ss_dssp             TTC------------GGGHHHHHHHHTS--SSCCHHHHHHHHHHC---C--------------------GGGHHHHHHHH
T ss_pred             hhh------------hhhHHHHHHHhCC--hHHHHHHHHHHHHcC---C--------------------HHHHHHHHHHH
Confidence            642            2356777777764  457778888887652   1                    22456666654


Q ss_pred             -cCCCHHHHHHHHHHHH
Q 014088          377 -SHDNTEIYEKAVKILE  392 (431)
Q Consensus       377 -~~~~~~v~~~a~~~l~  392 (431)
                       .+++.+++..|.+.|.
T Consensus       258 ~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         258 YKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             TTSSCCHHHHHHHHHHT
T ss_pred             ccCCCHHHHHHHHHHHc
Confidence             4568899999988775

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.8e-10  Score=114.92  Aligned_cols=341  Identities=16%  Similarity=0.143  Sum_probs=198.1

Q ss_pred             HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhc
Q 014088           32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN  111 (431)
Q Consensus        32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~  111 (431)
                      .++..+..+|..++....+.   +. .-+++.+...+.++++..|+.|+.+|+.++........... ...++.++..+ 
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~---il-~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l-  445 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCL-  445 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSS---SH-HHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHT-
T ss_pred             hHHHHHHHHHhhHhhhhHHH---HH-HHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhc-
Confidence            35667777776666422211   00 01345555667788999999999999999876543211111 12456677777 


Q ss_pred             cccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 014088          112 EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  190 (431)
Q Consensus       112 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  190 (431)
                      .++++.+|..++|+|+.++... +.........+++.++..+.++++.++..|+++|.+++........... ..+++.+
T Consensus       446 ~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~-~~il~~l  524 (888)
T d1qbkb_         446 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTL  524 (888)
T ss_dssp             TSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH-HHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHH
Confidence            7889999999999999998754 2233334578899999999999999999999999988753221111011 1334455


Q ss_pred             HHhcCCCCcccHHHHHHHHhHhhcCC------hhhhHHHh-------------------------------hcCC-----
Q 014088          191 VELLRHPSPSVLIPALRTVGNIVTGD------DMQTQCII-------------------------------NHQA-----  228 (431)
Q Consensus       191 ~~ll~~~~~~v~~~a~~~l~~l~~~~------~~~~~~~~-------------------------------~~~~-----  228 (431)
                      ...+...+...+..+..+++.++...      +.....++                               ..+.     
T Consensus       525 ~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~  604 (888)
T d1qbkb_         525 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCE  604 (888)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence            55555544444444444444433110      00000000                               0000     


Q ss_pred             --hHHHHHHhc----------------ccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHH
Q 014088          229 --LPCLLDLLT----------------QNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  289 (431)
Q Consensus       229 --l~~L~~lL~----------------~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  289 (431)
                        .+.+++++.                ...+..+...+..+++.++.. .......+....+++.+...+.+.++.+|..
T Consensus       605 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~  684 (888)
T d1qbkb_         605 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS  684 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHH
Confidence              111111110                001233444445555555431 1111122223456778888888899999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccH
Q 014088          290 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL  369 (431)
Q Consensus       290 a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  369 (431)
                      |..+++.++....+...+++..  +++.+...++.+...++..++++++.++......           +...+.  ..+
T Consensus       685 a~~llgdl~~~~~~~~~~~l~~--~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~-----------~~py~~--~il  749 (888)
T d1qbkb_         685 SFALLGDLTKACFQHVKPCIAD--FMPILGTNLNPEFISVCNNATWAIGEISIQMGIE-----------MQPYIP--MVL  749 (888)
T ss_dssp             HHHHHHHHHHHCGGGTGGGHHH--HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGG-----------GGGGSH--HHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH-----------hhhhHH--HHH
Confidence            9999998876543332233222  5677777788778899999999999998765432           122221  234


Q ss_pred             HHHHHhhcCC--CHHHHHHHHHHHHHh
Q 014088          370 EKIENLQSHD--NTEIYEKAVKILETY  394 (431)
Q Consensus       370 ~~l~~l~~~~--~~~v~~~a~~~l~~~  394 (431)
                      +.|..+++++  +..+++.+..++.++
T Consensus       750 ~~L~~il~~~~~~~~v~~n~~~~lgrl  776 (888)
T d1qbkb_         750 HQLVEIINRPNTPKTLLENTAITIGRL  776 (888)
T ss_dssp             HHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence            5566665543  456777777776643

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.2e-09  Score=114.62  Aligned_cols=362  Identities=12%  Similarity=0.079  Sum_probs=230.2

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChH------HH
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK------CR   94 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~------~~   94 (431)
                      ++++| +++++++|..|+.+|+.++...++..-    ..+++.|+..+.+++...+..+..+|..+...-+.      ..
T Consensus        50 ll~~L-~D~~~~Vq~~A~k~l~~l~~~~~~~~~----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~  124 (1207)
T d1u6gc_          50 ILKLL-EDKNGEVQNLAVKCLGPLVSKVKEYQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA  124 (1207)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred             HHHHh-CCCCHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhH
Confidence            33355 466789999999999999875543321    24678888888888888888888887766421110      00


Q ss_pred             HHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014088           95 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  174 (431)
Q Consensus        95 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  174 (431)
                      .. .....++.+...+....+..++..++.++..+....+.........+++.+...+.++++.+|..|+.+++.++...
T Consensus       125 ~~-~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~  203 (1207)
T d1u6gc_         125 AN-VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC  203 (1207)
T ss_dssp             HH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred             HH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            11 11123445555565667788999999999999876654444445678888999999999999999999999998765


Q ss_pred             hHHHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHH
Q 014088          175 NDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  253 (431)
Q Consensus       175 ~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  253 (431)
                      +..   . -..+++.++..+ .+.+..++..++.+++.++...+......+ ..+++.+.+.+.+. ++++|..++.++.
T Consensus       204 ~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~~r~~al~~l~  277 (1207)
T d1u6gc_         204 GNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFE  277 (1207)
T ss_dssp             --------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHH
T ss_pred             CHH---H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHhcCc-cHHHHHHHHHHHH
Confidence            432   1 124566666655 345667788888999988875543322222 36788899999888 8999999999998


Q ss_pred             HhhcCCHH----HHHHHHHh--------------------------------CCHHHHHHHHccCCHhHHHHHHHHHHHh
Q 014088          254 NITAGNVN----QIQAIIEA--------------------------------GIIGPLVNLLLNAEFEIKKEAAWAISNA  297 (431)
Q Consensus       254 nl~~~~~~----~~~~l~~~--------------------------------~~i~~L~~ll~~~~~~v~~~a~~aL~~l  297 (431)
                      .++...+.    ....++..                                ...+.......+.++.+|..++.+|..+
T Consensus       278 ~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l  357 (1207)
T d1u6gc_         278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV  357 (1207)
T ss_dssp             HHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHH
T ss_pred             HHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhH
Confidence            88763222    11111110                                0001111112233578999999999999


Q ss_pred             cCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCC----CCcchHHHHHHh--hccHHH
Q 014088          298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNT----GGVNLFAQAIDD--AEGLEK  371 (431)
Q Consensus       298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~----~~~~~~~~~l~~--~~~~~~  371 (431)
                      +.... +.... .-..+++.+...+...++.++..+..++..+.............    ...+.....+.+  ...++.
T Consensus       358 ~~~~~-~~l~~-~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  435 (1207)
T d1u6gc_         358 VSTRH-EMLPE-FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKA  435 (1207)
T ss_dssp             HTTCC-TTHHH-HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHH
T ss_pred             HHHHH-HHHHH-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHH
Confidence            87654 22222 23458899999999889999999999998887654322110000    000001111111  123556


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcC
Q 014088          372 IENLQSHDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       372 l~~l~~~~~~~v~~~a~~~l~~~~~  396 (431)
                      +.....+.+..++..+..++..+..
T Consensus       436 l~~~l~~~~~~~r~~~~~~l~~l~~  460 (1207)
T d1u6gc_         436 LHKQMKEKSVKTRQCCFNMLTELVN  460 (1207)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHHH
Confidence            6667788899999888887776543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9e-10  Score=102.60  Aligned_cols=353  Identities=11%  Similarity=0.097  Sum_probs=217.6

Q ss_pred             HHhhhccC-CChHHHHHHHHHHHHHcCCChHhH-HHH----------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 014088           21 FFHCFFSC-CFGAVQFEAAWALTNIASGTSENT-RVV----------IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG   88 (431)
Q Consensus        21 lv~~L~~s-~~~~~~~~a~~~L~~l~~~~~~~~-~~~----------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   88 (431)
                      +...+.+. .+..+|..|+..|.+......... ...          ....+.+.+++.+.++++.. ..++.+++.++.
T Consensus        39 l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~-~~~~~~~~~i~~  117 (458)
T d1ibrb_          39 LSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIAC  117 (458)
T ss_dssp             HHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCcHHH-HHHHHHHHHHHH
Confidence            33455443 346788888888888765432221 111          11234456667666654433 334445555432


Q ss_pred             CChHHHHHHHHcCChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCC-CCCChhhHhhhHHHHHHhhcCC--ChHHHHHHH
Q 014088           89 DSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN--DDEVLTDAC  164 (431)
Q Consensus        89 ~~~~~~~~i~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~  164 (431)
                      ....   .-...+.++.+...+.. ..+...+..++.++..++... +.........+++.+...+.++  +.+++..++
T Consensus       118 ~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~  194 (458)
T d1ibrb_         118 AEIP---VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAAT  194 (458)
T ss_dssp             HHGG---GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred             HhCC---cccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHH
Confidence            1100   00012356677777643 345667888899998888654 2233334467888888888754  578999999


Q ss_pred             HHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhh
Q 014088          165 WALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  243 (431)
Q Consensus       165 ~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  243 (431)
                      .++.++......... ........+.+...+.+++++++..++.++..++..........+.....+.+...+.+. ++.
T Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~  273 (458)
T d1ibrb_         195 NALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDE  273 (458)
T ss_dssp             HHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHH
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHH
Confidence            999998866543221 122224566777888889999999999999999875554333233333344455556666 888


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHH--------------------HHHhCCHHHHHHHHcc-------CCHhHHHHHHHHHHH
Q 014088          244 IKKEACWTISNITAGNVNQIQA--------------------IIEAGIIGPLVNLLLN-------AEFEIKKEAAWAISN  296 (431)
Q Consensus       244 v~~~a~~~L~nl~~~~~~~~~~--------------------l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~~  296 (431)
                      ++..++..+..++.........                    .....+++.+.+.+..       .+..++..+..++..
T Consensus       274 ~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~  353 (458)
T d1ibrb_         274 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML  353 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHH
Confidence            9999999888886421111100                    0011234445554432       134688888888888


Q ss_pred             hcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh
Q 014088          297 ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ  376 (431)
Q Consensus       297 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~  376 (431)
                      ++.....+....     +++.+.+.++++++.++..++.+|..++.......          +...+  ...++.|...+
T Consensus       354 l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~----------~~~~l--~~i~~~l~~~l  416 (458)
T d1ibrb_         354 LATCCEDDIVPH-----VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIELM  416 (458)
T ss_dssp             HHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHHGG
T ss_pred             HHHhccHhhhhH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhH----------HHHHH--HHHHHHHHHHh
Confidence            876443333333     46677788889999999999999998875432211          11112  23467788889


Q ss_pred             cCCCHHHHHHHHHHHHHhc
Q 014088          377 SHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       377 ~~~~~~v~~~a~~~l~~~~  395 (431)
                      +++++.||..|.++|.++.
T Consensus       417 ~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         417 KDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             GCSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1e-10  Score=122.97  Aligned_cols=346  Identities=13%  Similarity=0.080  Sum_probs=219.1

Q ss_pred             hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088           24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  103 (431)
Q Consensus        24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  103 (431)
                      .+ .++|+++|..|+.-|.+.........+.-....+++.++++|+++++++|..|+.+|+.++...++.  .+.  ..+
T Consensus        11 k~-~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~--~~~--~l~   85 (1207)
T d1u6gc_          11 KM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QVE--TIV   85 (1207)
T ss_dssp             HT-TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HHH--HHH
T ss_pred             hc-CCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh--hHH--HHH
Confidence            45 4678999999999888865422111000011236899999999999999999999999998765542  211  246


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCC------ChhhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChH
Q 014088          104 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP------LFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTND  176 (431)
Q Consensus       104 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~------~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~  176 (431)
                      +.|+..+ .+.+...+..+..+|..+...-+..      .......+++.+...+. ..+..++..++.++..+....+.
T Consensus        86 ~~L~~~l-~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~  164 (1207)
T d1u6gc_          86 DTLCTNM-LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG  164 (1207)
T ss_dssp             HHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHh-cCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH
Confidence            6777777 5567777888888877765432111      11122445555665554 44788999999999887654322


Q ss_pred             HHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhh
Q 014088          177 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  256 (431)
Q Consensus       177 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  256 (431)
                      ..... ...+++.++..+.++++.+|..|+.+++.++...+..   .. ...++.+++.+........+..++.+++.++
T Consensus       165 ~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~  239 (1207)
T d1u6gc_         165 LLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAIS  239 (1207)
T ss_dssp             SCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred             hhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            11111 1146677888889999999999999999998754321   11 2456667766654436677788888888887


Q ss_pred             cCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHh----------------
Q 014088          257 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD----------------  320 (431)
Q Consensus       257 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~----------------  320 (431)
                      ...+......+ ..+++.+.+.+...+.++++.++.++..++.....+...++.+  .++.+..                
T Consensus       240 ~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--ii~~~l~~l~~dp~~~~~~~~~~  316 (1207)
T d1u6gc_         240 RQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST--IINICLKYLTYDPNYNYDDEDED  316 (1207)
T ss_dssp             HHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHH--HHHHHTTCCCCC-----------
T ss_pred             HHcchhhHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHH--HHHHHHHHHhcCcchhhhhHHHH
Confidence            63333221111 3468889999999999999999999988876543211111100  1111111                


Q ss_pred             ---------------------hcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCC
Q 014088          321 ---------------------LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD  379 (431)
Q Consensus       321 ---------------------ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~  379 (431)
                                           ......+.++..++.+|..++......           +...+  ...++.+.....+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~-----------l~~~~--~~~~~~L~~~l~d~  383 (1207)
T d1u6gc_         317 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM-----------LPEFY--KTVSPALISRFKER  383 (1207)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTT-----------HHHHH--TTTHHHHHSTTSCS
T ss_pred             HhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHH-----------HHHHH--HHHHHHHHHHhcCC
Confidence                                 112234578888888888887643321           22222  23466777778888


Q ss_pred             CHHHHHHHHHHHHHhcC
Q 014088          380 NTEIYEKAVKILETYWV  396 (431)
Q Consensus       380 ~~~v~~~a~~~l~~~~~  396 (431)
                      ++.++..+...+..+..
T Consensus       384 ~~~vr~~~~~~l~~l~~  400 (1207)
T d1u6gc_         384 EENVKADVFHAYLSLLK  400 (1207)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHH
Confidence            99999988887776653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=5.2e-09  Score=97.25  Aligned_cols=270  Identities=13%  Similarity=0.062  Sum_probs=172.1

Q ss_pred             hhhc-cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHHH-HHH
Q 014088           23 HCFF-SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRD-LVL   98 (431)
Q Consensus        23 ~~L~-~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~-~i~   98 (431)
                      +.+. ...++..+..++.++..++.........-....+++.+.+.+.+  .+..++..++.++.++......... ...
T Consensus       134 ~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~  213 (458)
T d1ibrb_         134 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE  213 (458)
T ss_dssp             HHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHH
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            3444 33445778888888888764222211111112456778888765  5678999999999999865433211 111


Q ss_pred             HcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhH-hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH
Q 014088           99 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK  177 (431)
Q Consensus        99 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  177 (431)
                      .....+.+...+ .+++++++..++.++..++...+..-.... ....+.+...+.+.+.+++..++..+..++......
T Consensus       214 ~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~  292 (458)
T d1ibrb_         214 RHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL  292 (458)
T ss_dssp             HHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHhhHHHHh-cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            112334455555 778999999999999999876533222222 234445566677888999999998888776321111


Q ss_pred             H--------------------HHHHHhCcHHHHHHhcCC-------CCcccHHHHHHHHhHhhcCChhhhHHHhhcCChH
Q 014088          178 I--------------------QAVIEAGVCPRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP  230 (431)
Q Consensus       178 ~--------------------~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~  230 (431)
                      .                    .......+++.+...+..       .+..++..+..++..++...+...   +. .+++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~-~l~~  368 (458)
T d1ibrb_         293 AIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---VP-HVLP  368 (458)
T ss_dssp             HHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---HH-HHHH
T ss_pred             HHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh---hh-HHHH
Confidence            0                    001111234444554432       334678888888888876443221   11 3567


Q ss_pred             HHHHHhcccchhhHHHHHHHHHHHhhcCC-HHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          231 CLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       231 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      .+.+.+.++ ++.+|..|+.+|+.++.+. ++.....+ ..+++.++..++++++.||..|+++|+.++.
T Consensus       369 ~i~~~l~s~-~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         369 FIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            788888888 8999999999999998642 22222222 3478899999999999999999999999864

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1e-08  Score=103.13  Aligned_cols=315  Identities=14%  Similarity=0.191  Sum_probs=192.1

Q ss_pred             hhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCCh
Q 014088           24 CFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  103 (431)
Q Consensus        24 ~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  103 (431)
                      ....++++..+..++.+++.++.........-.-..+++.++..+.++++.+|..++++++.++...+.   .+.....+
T Consensus       376 ~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~  452 (861)
T d2bpta1         376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE---SIDPQQHL  452 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG---GSCTTTTH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhch---hhhhHHhh
Confidence            344567789999999999999875433322222235788999999999999999999999998743211   11112234


Q ss_pred             HHHHHHhc--cccchhHHHHHHHHHHHhhcCC----CCCChhhHhhhHHHHHHhhcC--CChHHHHHHHHHHHHhccCCh
Q 014088          104 MPLLAQFN--EHAKLSMLRNATWTLSNFCRGK----PQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTN  175 (431)
Q Consensus       104 ~~l~~~l~--~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~  175 (431)
                      +.++..+.  ...++.+...+++++..++...    ...........+..++.....  .+..++..+..++..+....+
T Consensus       453 ~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~  532 (861)
T d2bpta1         453 PGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT  532 (861)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhH
Confidence            44444332  1345778888888888776543    111222234455556655543  356788888888888775543


Q ss_pred             HHHHHHHH---hCcHHHHHHhcCCCCc-----------ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccch
Q 014088          176 DKIQAVIE---AGVCPRLVELLRHPSP-----------SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK  241 (431)
Q Consensus       176 ~~~~~~~~---~~~i~~L~~ll~~~~~-----------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  241 (431)
                      ........   ....+.+...+.....           .++..+..++..+....+....... ..+++.+.+.+....+
T Consensus       533 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~  611 (861)
T d2bpta1         533 DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDS  611 (861)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhhcccCCc
Confidence            32221111   1222333333333211           1233334444444332222211111 1345667777766646


Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 014088          242 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL  321 (431)
Q Consensus       242 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l  321 (431)
                      ..++..++.++++++....+.....++ .++|.++..+.+.+..++..|+.+++.++.........++.  .+++.|.+.
T Consensus       612 ~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~--~i~~~L~~~  688 (861)
T d2bpta1         612 AFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD--AMMNVLAQM  688 (861)
T ss_dssp             GGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH--HHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHH--HHHHHHHHH
Confidence            778999999999988642333333333 37889999999999999999999999987655433333332  267778888


Q ss_pred             cCCC--CHHHHHHHHHHHHHHHHhhh
Q 014088          322 LNCP--DPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       322 l~~~--~~~v~~~al~~L~~l~~~~~  345 (431)
                      ++.+  +..++..++.+|..++....
T Consensus       689 l~~~~~~~~~k~~~~~~l~~i~~~~~  714 (861)
T d2bpta1         689 ISNPNARRELKPAVLSVFGDIASNIG  714 (861)
T ss_dssp             HHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            7654  56788889999998887544

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=2e-07  Score=93.37  Aligned_cols=354  Identities=10%  Similarity=0.050  Sum_probs=215.6

Q ss_pred             HHhhhcc-CCChHHHHHHHHHHHHHcCCChHhHHHH--------H----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014088           21 FFHCFFS-CCFGAVQFEAAWALTNIASGTSENTRVV--------I----DHGAVPIFVRLLSSPTDDVREQAVWALGNVA   87 (431)
Q Consensus        21 lv~~L~~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~--------~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~   87 (431)
                      +.+.+.+ +.++.+|..|+..|.|...........-        +    ...+-..+++.+.++++.+|..+..+++.++
T Consensus        44 l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~  123 (861)
T d2bpta1          44 SSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIA  123 (861)
T ss_dssp             HHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            4445543 3456788888888888765332211110        0    0123356677788889999999999999987


Q ss_pred             CCC-hHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh---hhHhhhHHHHHHhhc--CCChHHHH
Q 014088           88 GDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIH--SNDDEVLT  161 (431)
Q Consensus        88 ~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~i~~L~~lL~--~~~~~v~~  161 (431)
                      ... +..+.    ...++.++..+..+.+..++..++.+|..++........   ......++.+...+.  ..+..++.
T Consensus       124 ~~~~p~~~w----peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~  199 (861)
T d2bpta1         124 DIELPHGAW----PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL  199 (861)
T ss_dssp             HHHGGGTCC----HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred             HHhCCcCch----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence            421 10000    013556667775555677888899999999876532222   222445555555554  34688999


Q ss_pred             HHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccc
Q 014088          162 DACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY  240 (431)
Q Consensus       162 ~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~  240 (431)
                      .++.++.++......... ......+++.+...+.++++.++..++.++..++..........+..-+...+....++. 
T Consensus       200 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-  278 (861)
T d2bpta1         200 AALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-  278 (861)
T ss_dssp             HHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-
T ss_pred             HHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-
Confidence            999999988765543221 112224567778888999999999999999999865444433333322223334444555 


Q ss_pred             hhhHHHHHHHHHHHhhcCCHHHHHHHHH----------------hCCHHHHHHHHccC-------CHhHHHHHHHHHHHh
Q 014088          241 KKSIKKEACWTISNITAGNVNQIQAIIE----------------AGIIGPLVNLLLNA-------EFEIKKEAAWAISNA  297 (431)
Q Consensus       241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~----------------~~~i~~L~~ll~~~-------~~~v~~~a~~aL~~l  297 (431)
                      ++.++..++..+..++............                ..+++.+...+...       +...+..+..++..+
T Consensus       279 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  358 (861)
T d2bpta1         279 NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLF  358 (861)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Confidence            8899999988888776531111111111                12345555555432       335666777777666


Q ss_pred             cCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc
Q 014088          298 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS  377 (431)
Q Consensus       298 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~  377 (431)
                      +..........     ..+.+...+...++..+..++.++..+........          ....+.  ..++.+...+.
T Consensus       359 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~----------~~~~l~--~~l~~l~~~l~  421 (861)
T d2bpta1         359 AQNCGNHILEP-----VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ----------RTYYVH--QALPSILNLMN  421 (861)
T ss_dssp             HHHHGGGGHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH----------HHHHHH--HHHHHHHHGGG
T ss_pred             Hhhcchhhhhh-----hcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh----------HHHHHH--HHHHHHHHHhc
Confidence            54322111111     23445556677888999999999888775443221          122232  24677888889


Q ss_pred             CCCHHHHHHHHHHHHHhcC
Q 014088          378 HDNTEIYEKAVKILETYWV  396 (431)
Q Consensus       378 ~~~~~v~~~a~~~l~~~~~  396 (431)
                      ++++.++..+.+++.++..
T Consensus       422 d~~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         422 DQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             CSCHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHHHHH
Confidence            9999999999988876543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=9.2e-08  Score=86.17  Aligned_cols=331  Identities=12%  Similarity=0.131  Sum_probs=197.0

Q ss_pred             HHhhhccCCChHHHHHHHHHHHHHcCCChHhH---HHHHhCC--ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHH--
Q 014088           21 FFHCFFSCCFGAVQFEAAWALTNIASGTSENT---RVVIDHG--AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--   93 (431)
Q Consensus        21 lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--   93 (431)
                      ++.+|...+.+++....+..+..+...++...   ..+....  .-+.+...+..++.-+...+...+..++......  
T Consensus        79 ~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~  158 (477)
T d1ho8a_          79 LIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVK  158 (477)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHH
T ss_pred             HHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccccccc
Confidence            44477777788888888888888776543221   1222221  2234455566666777777777777777543221  


Q ss_pred             -HHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088           94 -RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIHSNDDEVLTDACWALSYL  170 (431)
Q Consensus        94 -~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  170 (431)
                       .+....   ...++..+....+......++.++..+.+..+.+...  .....++.++.+|+..               
T Consensus       159 ~~e~l~~---~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a---------------  220 (477)
T d1ho8a_         159 LVEKLLK---NNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRA---------------  220 (477)
T ss_dssp             HHHHHHH---CHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHH---------------
T ss_pred             hHHHHHH---hhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHH---------------
Confidence             222222   2233444445667777777888888887765333332  1234555555555411               


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhc-CCCCcccHHHHHHHHhHhhcCChhhhHHHhhc--CChHHHHHHhcccchhhHHHH
Q 014088          171 SDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKKE  247 (431)
Q Consensus       171 ~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~  247 (431)
                      ....           ....++... ......+...++.+++-++... .....+...  +.++.++++++....+++.+-
T Consensus       221 ~~~~-----------~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv  288 (477)
T d1ho8a_         221 TDSQ-----------LATRIVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRL  288 (477)
T ss_dssp             HC------------------------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             hccc-----------ccchhhcccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence            0000           000111111 1122356778899999998743 344445443  348888899877768999999


Q ss_pred             HHHHHHHhhcCC-----HHHHHHHHHhCCHHHHHHHHccC---CHhHHHHHHHHHHHhcC--------------------
Q 014088          248 ACWTISNITAGN-----VNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATS--------------------  299 (431)
Q Consensus       248 a~~~L~nl~~~~-----~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~--------------------  299 (431)
                      ++.++.|++...     ......++..++++. ++.|...   |+++... +..|.....                    
T Consensus       289 ~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~ed-l~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~  366 (477)
T d1ho8a_         289 CISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQD-ISNLKEILENEYQELTSFDEYVAELDSKL  366 (477)
T ss_dssp             HHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHhcCC
Confidence            999999998631     122344566666654 4555443   6655432 222222211                    


Q ss_pred             --CC----CH----HHHHHHHHC--CChHHHHhhcC----------CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcc
Q 014088          300 --GG----SN----EQIKFLVSQ--GCIKPLCDLLN----------CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVN  357 (431)
Q Consensus       300 --~~----~~----~~~~~l~~~--~~l~~L~~ll~----------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~  357 (431)
                        .+    ++    ++...|-+.  .++..|+++++          +.|+.+...|+.=++.+++..+..          
T Consensus       367 L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g----------  436 (477)
T d1ho8a_         367 LCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES----------  436 (477)
T ss_dssp             CCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH----------
T ss_pred             CCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch----------
Confidence              10    01    111222211  23778888885          346778888899999999877653          


Q ss_pred             hHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014088          358 LFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  395 (431)
Q Consensus       358 ~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  395 (431)
                        +..+.+.|+.+++.+|++|+|++|+..|..+++.+.
T Consensus       437 --r~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         437 --IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             --HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             --hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence              777889999999999999999999999999988764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6.2e-08  Score=97.59  Aligned_cols=357  Identities=13%  Similarity=0.079  Sum_probs=217.2

Q ss_pred             hHHHHHhhhccCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHH
Q 014088           17 VDQFFFHCFFSCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCR   94 (431)
Q Consensus        17 v~~~lv~~L~~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~   94 (431)
                      ++..+++.+.+ ++ ..+..++.+++.++...-....   =.++++.+.+.+.+  ....++..++.+|..++..-....
T Consensus        91 ik~~ll~~l~~-~~-~~~~~~a~~i~~i~~~~~p~~~---Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~  165 (876)
T d1qgra_          91 VKNYVLHTLGT-ET-YRPSSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ  165 (876)
T ss_dssp             HHHHHHHHTTT-CC-SSSCHHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHhcC-Cc-HHHHHHHHHHHHHHHHHCCccc---cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHH
Confidence            33445556653 33 3455677788777652100000   02678999988865  347788899999999875322111


Q ss_pred             HHHHHcCChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCCCC--CChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014088           95 DLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  171 (431)
Q Consensus        95 ~~i~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  171 (431)
                      ..-.....++.++..+.. +.+.+++..++.++.+.......  ........+++.+...+.+++++++..++.++..+.
T Consensus       166 ~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~  245 (876)
T d1qgra_         166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM  245 (876)
T ss_dssp             HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            110112245666777643 34578899999988887765311  111222446677788888899999999999999998


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhhHH--------------------HhhcCChHH
Q 014088          172 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC--------------------IINHQALPC  231 (431)
Q Consensus       172 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~--------------------~~~~~~l~~  231 (431)
                      ...+..........+...+...+.+....++..++..+..++.........                    .....+++.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (876)
T d1qgra_         246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  325 (876)
T ss_dssp             HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            766555444444455666667777788888888888777776422111000                    011122334


Q ss_pred             HHHHhccc------chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHH
Q 014088          232 LLDLLTQN------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ  305 (431)
Q Consensus       232 L~~lL~~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  305 (431)
                      +...+...      ....++..|..++..++...++   .++. .+++.+.+.+.++++..+..++.+++.+........
T Consensus       326 l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~  401 (876)
T d1qgra_         326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ  401 (876)
T ss_dssp             HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred             hHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh---hhhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHH
Confidence            44443221      1335778888888777652111   1111 134556666677899999999999999987765454


Q ss_pred             HHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHH
Q 014088          306 IKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYE  385 (431)
Q Consensus       306 ~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~  385 (431)
                      ..... ..+++.+...+.++++.++..+++++.++++.......      ...+..     ..++.+.... ++++.++.
T Consensus       402 ~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~------~~~~~~-----~~~~~l~~~l-~~~~~v~~  468 (876)
T d1qgra_         402 LKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI------NDVYLA-----PLLQCLIEGL-SAEPRVAS  468 (876)
T ss_dssp             HHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS------STTTHH-----HHHHHHHHHT-TSCHHHHH
T ss_pred             HHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhh------hHHHhh-----hHHHHHHHHh-cCCHHHHH
Confidence            43322 23688888899999999999999999999876543211      000111     1123333333 45788888


Q ss_pred             HHHHHHHHhc
Q 014088          386 KAVKILETYW  395 (431)
Q Consensus       386 ~a~~~l~~~~  395 (431)
                      .+.+.+..+.
T Consensus       469 ~~~~~l~~l~  478 (876)
T d1qgra_         469 NVCWAFSSLA  478 (876)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887776654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.1e-07  Score=92.29  Aligned_cols=313  Identities=13%  Similarity=0.069  Sum_probs=192.9

Q ss_pred             HhhhccC-CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCChHHHH-HH
Q 014088           22 FHCFFSC-CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRD-LV   97 (431)
Q Consensus        22 v~~L~~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~-~i   97 (431)
                      ++.+.+. .++.++..++.++..++..-....-.-....+++.+++.+.+  ++..++..++.++.+.......... ..
T Consensus       134 ~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~  213 (876)
T d1qgra_         134 VANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES  213 (876)
T ss_dssp             HHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHH
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            3355433 345788899999998875221111001112467888888765  4578999999999887654332111 01


Q ss_pred             HHcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhH-hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014088           98 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTND  176 (431)
Q Consensus        98 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  176 (431)
                      ...-.++.+...+ .+++++++..++.++..++...+....... ..+.+.+...+.+.+.+++..++..+..++.....
T Consensus       214 ~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  292 (876)
T d1qgra_         214 ERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD  292 (876)
T ss_dssp             HHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            1111234455555 678899999999999999876543333333 34555667777788888888888877776642211


Q ss_pred             HHH--------------------HHHHhCcHHHHHHhcCC-------CCcccHHHHHHHHhHhhcCChhhhHHHhhcCCh
Q 014088          177 KIQ--------------------AVIEAGVCPRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL  229 (431)
Q Consensus       177 ~~~--------------------~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l  229 (431)
                      ...                    ......+++.+...+..       ++..++..+..++..++.......   + ..++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~~~  368 (876)
T d1qgra_         293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVL  368 (876)
T ss_dssp             HHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---H-HHHH
T ss_pred             HHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---h-hhhH
Confidence            100                    01111233444444432       234577777777777765332211   1 1234


Q ss_pred             HHHHHHhcccchhhHHHHHHHHHHHhhcC-CHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHH
Q 014088          230 PCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF  308 (431)
Q Consensus       230 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  308 (431)
                      +.+.+.+.+. +...|..++..++.++.. .......... .+++.+...+.++++.++..++++++.++......    
T Consensus       369 ~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----  442 (876)
T d1qgra_         369 PFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVI-QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA----  442 (876)
T ss_dssp             HHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG----
T ss_pred             HHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchh----
Confidence            5566677777 899999999999998874 3444444433 37888999999999999999999999987532110    


Q ss_pred             HHHCC----ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 014088          309 LVSQG----CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  346 (431)
Q Consensus       309 l~~~~----~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  346 (431)
                      .....    +++.+...++ .++.++..+++++.++......
T Consensus       443 ~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~~  483 (876)
T d1qgra_         443 AINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYE  483 (876)
T ss_dssp             TSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHH
Confidence            01112    2444444444 4788889999999998875543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=1.7e-06  Score=77.75  Aligned_cols=269  Identities=13%  Similarity=0.069  Sum_probs=173.9

Q ss_pred             cCCChHHHHHHHHHHHHHcCCChHhH---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH--cC
Q 014088           27 SCCFGAVQFEAAWALTNIASGTSENT---RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--NG  101 (431)
Q Consensus        27 ~s~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~~  101 (431)
                      ..++.-....+...+..++.......   +.+..  ....+-.+....+...+..++.++..+.... ..|..+..  ..
T Consensus       132 ~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~-~~R~~fw~~~~~  208 (477)
T d1ho8a_         132 KGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKK  208 (477)
T ss_dssp             CSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHH
T ss_pred             cCchhHHHHHHHHHHHHHHhccccccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhcCc-cHHHHHHHcccc
Confidence            35556677777777787776443222   22221  2333444446678888888999999888754 46766643  33


Q ss_pred             ChHHHHHHhcc----------------ccchhHHHHHHHHHHHhhcCCCCCChhhH--hhhHHHHHHhhc-CCChHHHHH
Q 014088          102 ALMPLLAQFNE----------------HAKLSMLRNATWTLSNFCRGKPQPLFEQT--RPALPALERLIH-SNDDEVLTD  162 (431)
Q Consensus       102 ~i~~l~~~l~~----------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~lL~-~~~~~v~~~  162 (431)
                      .+.+++..|..                .....++..++.++|-|+.+.........  ...++.++.+++ +...++.+-
T Consensus       209 ~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv  288 (477)
T d1ho8a_         209 FMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRL  288 (477)
T ss_dssp             HHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             hHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence            46666666632                12457889999999999976422222211  245888888887 557889999


Q ss_pred             HHHHHHHhccCChH-----HHHHHHHhCcHHHHHHhcCC--CCcccHHHHHHHHhHh--------hc-------------
Q 014088          163 ACWALSYLSDGTND-----KIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNI--------VT-------------  214 (431)
Q Consensus       163 a~~~L~~l~~~~~~-----~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l--------~~-------------  214 (431)
                      ++.++.|+......     ....++..++++.+-.+...  .|+++.... ..|...        +.             
T Consensus       289 ~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl-~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L  367 (477)
T d1ho8a_         289 CISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAELDSKLL  367 (477)
T ss_dssp             HHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHhcCCC
Confidence            99999999865321     23345565666655444333  344433322 112111        10             


Q ss_pred             -CChhhh-HHHh----------hcCChHHHHHHhcc---------cchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHH
Q 014088          215 -GDDMQT-QCII----------NHQALPCLLDLLTQ---------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  273 (431)
Q Consensus       215 -~~~~~~-~~~~----------~~~~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  273 (431)
                       -++.+. ..+-          +..+++.|+++|+.         +.++.+..-||.=+|.+++..|..+..+-+-|+=.
T Consensus       368 ~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~  447 (477)
T d1ho8a_         368 CWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKA  447 (477)
T ss_dssp             CCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHH
T ss_pred             CCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHH
Confidence             011111 1111          22458889999862         22778888999999999997788888888899999


Q ss_pred             HHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          274 PLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       274 ~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      .+++++.+++++||.+|+.++..+..
T Consensus       448 ~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         448 DIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.48  E-value=1.8e-08  Score=73.97  Aligned_cols=108  Identities=20%  Similarity=0.195  Sum_probs=88.7

Q ss_pred             cCCChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHH
Q 014088           27 SCCFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL  106 (431)
Q Consensus        27 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l  106 (431)
                      +++++.+|..|+++|+.+..            ..++.|++.|+++++.+|..++++|+++..  +         +.++.|
T Consensus         2 ~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~L   58 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPL   58 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHHH
Confidence            35667888888888776532            367889999999999999999999998753  1         146788


Q ss_pred             HHHhccccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 014088          107 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS  168 (431)
Q Consensus       107 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  168 (431)
                      ...| .++++.++..++++|..+..          ...++.|..+++++++.++..|+.+|.
T Consensus        59 ~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          59 IKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             Hhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8888 78899999999999998743          367899999999999999999988774

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.44  E-value=2.8e-08  Score=72.93  Aligned_cols=109  Identities=18%  Similarity=0.218  Sum_probs=87.9

Q ss_pred             cCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHH
Q 014088          194 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  273 (431)
Q Consensus       194 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  273 (431)
                      |.++++.||..++++|+.+..            ..++.|++.|.++ ++.+|..|+++|+++..  +         +.++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~---------~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E---------RAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H---------HHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--h---------hhHH
Confidence            456788899888888876531            3567889999988 99999999999998743  2         2467


Q ss_pred             HHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 014088          274 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  338 (431)
Q Consensus       274 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~  338 (431)
                      .|..++.++++.||..|+++|+.+..   +.         .++.|..+++++++.++..|+.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~---~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc---cc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            89999999999999999999998842   22         3677778999999999999988864

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.0053  Score=51.45  Aligned_cols=213  Identities=12%  Similarity=0.116  Sum_probs=154.7

Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChH----HHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHH
Q 014088           53 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK----CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  128 (431)
Q Consensus        53 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  128 (431)
                      ..+...+.+..|+..|..-+-+.|..+..+++++.+....    ..+.+..  -...+..++..-.++++.-.+...|..
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~--~~eil~~L~~gye~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc--CHHHHHHHHhhcCCcchhhhhhHHHHH
Confidence            3455578899999999988999999999999999754322    2234443  234444455444577888888888888


Q ss_pred             hhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCCcccHHHH
Q 014088          129 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPA  205 (431)
Q Consensus       129 l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a  205 (431)
                      .+++..-.........+..+.+.++.++-++...|..++..+....+.....+...   .++.....+|.+++.-+++.+
T Consensus       141 cik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqS  220 (330)
T d1upka_         141 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS  220 (330)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHH
Confidence            88876555555566777788889999999999999999998876665444444443   467777888999999999999


Q ss_pred             HHHHhHhhcCChh--hhHHHh-hcCChHHHHHHhcccchhhHHHHHHHHHHHhhcC---CHHHHHHHHH
Q 014088          206 LRTVGNIVTGDDM--QTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIE  268 (431)
Q Consensus       206 ~~~l~~l~~~~~~--~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~  268 (431)
                      +..|+.+......  .....+ +..-+..++.+|++. +..++.+|..++--+...   +++....+..
T Consensus       221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~  288 (330)
T d1upka_         221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLK  288 (330)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHHHHHHHH
Confidence            9999999864332  222222 445688999999999 899999999888877762   3444444443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.0095  Score=49.85  Aligned_cols=198  Identities=14%  Similarity=0.074  Sum_probs=142.5

Q ss_pred             HHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcCChhhh----HHHhhcCChHHHHHHhcccchhhHHHHHHHHHHHh
Q 014088          180 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT----QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  255 (431)
Q Consensus       180 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  255 (431)
                      .+...+.+..++..|..-+.+.|..+..+++++.+......    ..+...  .+.+..++..-.++++...+...|..+
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            35566888889999998888999999999999987543222    223321  233333333332556667777777777


Q ss_pred             hcCCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCC---ChHHHHhhcCCCCHHHHHH
Q 014088          256 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG---CIKPLCDLLNCPDPRIVTV  332 (431)
Q Consensus       256 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~---~l~~L~~ll~~~~~~v~~~  332 (431)
                      ++. +.....++....+..+.+.++.++.++...|..++..+...+. .....++..+   +......++.+++.-++..
T Consensus       142 ik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk-~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         142 IRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK-LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             Hhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCH-HHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            776 7778888888889999999999999999999999999987663 4444444433   4666778899999999999


Q ss_pred             HHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHH
Q 014088          333 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI  390 (431)
Q Consensus       333 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~  390 (431)
                      ++..|+.++........         ....+.+..-+..+..|+.+++..++-.|=.+
T Consensus       220 SlKLLgelLldr~N~~v---------m~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhV  268 (330)
T d1upka_         220 SLKLLGELLLDRHNFTI---------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHV  268 (330)
T ss_dssp             HHHHHHHHHHSGGGHHH---------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHH---------HHHHhCCHHHHHHHHHHhcCchhhHHHHhhhH
Confidence            99999999976554332         24556666667777888888877775444333

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.90  E-value=0.00024  Score=58.23  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=18.1

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHH
Q 014088           59 GAVPIFVRLLSSPTDDVREQAVWA   82 (431)
Q Consensus        59 g~i~~L~~lL~~~~~~v~~~a~~~   82 (431)
                      --+..|..+++++++.||..++..
T Consensus        66 a~~~~L~~Ll~D~d~~VR~~AA~~   89 (233)
T d1lrva_          66 SPVEALTPLIRDSDEVVRRAVAYR   89 (233)
T ss_dssp             SCGGGGGGGTTCSSHHHHHHHHTT
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHH
Confidence            346677788888888888887654

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.051  Score=53.97  Aligned_cols=253  Identities=10%  Similarity=0.074  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhh----C--CCCHHHHHHHHHHHHHhcCCCh-------------H
Q 014088           32 AVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL----S--SPTDDVREQAVWALGNVAGDSP-------------K   92 (431)
Q Consensus        32 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL----~--~~~~~v~~~a~~~L~~l~~~~~-------------~   92 (431)
                      ..+..|...+..++....+....    .+.+.+...+    .  +.++..++.++.+++.+.....             .
T Consensus       376 ~~r~~a~~ll~~l~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~  451 (959)
T d1wa5c_         376 TRRRACTDFLKELKEKNEVLVTN----IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (959)
T ss_dssp             CHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             cHHHHHHHHHHHHHHhccccchH----HHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhh
Confidence            34556666666666533322111    1122222222    2  2567778888888887753211             0


Q ss_pred             HHHHHHHcCChHHHHHHhc--cccchhHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014088           93 CRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  170 (431)
Q Consensus        93 ~~~~i~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  170 (431)
                      ....     ..+.+...+.  ......++..++|+++..+...   .......+++.++.+|.+++..++..|++++..+
T Consensus       452 ~~~~-----l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~  523 (959)
T d1wa5c_         452 VVDF-----FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKI  523 (959)
T ss_dssp             HHHH-----HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHH-----HHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            1111     1122222232  2345678889999999988753   2234568899999999999999999999999998


Q ss_pred             ccCChH-----------HHHHHHHhCcHHHHHHhcCCCCc-----ccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHH
Q 014088          171 SDGTND-----------KIQAVIEAGVCPRLVELLRHPSP-----SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD  234 (431)
Q Consensus       171 ~~~~~~-----------~~~~~~~~~~i~~L~~ll~~~~~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~  234 (431)
                      +.....           ....... .++..++..+.....     .....++.++..+............. .+++.+..
T Consensus       524 ~~~~~~~~~~~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~-~i~~~l~~  601 (959)
T d1wa5c_         524 LTIRESNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIE  601 (959)
T ss_dssp             TTCBSCSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHH
T ss_pred             HHhhcccccchhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            753211           0000111 234445555433221     12234555555554322111111110 12333333


Q ss_pred             H----hcccchhhHHHHHHHHHHHhhc-CCHHHHHHHHHhCCHHHHHHHHccCCHhHHHHHHHHHHHhcC
Q 014088          235 L----LTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  299 (431)
Q Consensus       235 l----L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  299 (431)
                      .    .+++.++.....+..+++.+.. .+++....+. ..++|.+..++..........+...+..+..
T Consensus       602 ~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~-~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         602 IVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            3    3444356667777778887765 2344433333 3467888888877766667777777766654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.74  E-value=0.14  Score=43.84  Aligned_cols=219  Identities=15%  Similarity=0.128  Sum_probs=130.9

Q ss_pred             ChHhHHHHHh----C---CChHHHHHhhCCCC--HHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhcc---ccc
Q 014088           48 TSENTRVVID----H---GAVPIFVRLLSSPT--DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAK  115 (431)
Q Consensus        48 ~~~~~~~~~~----~---g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~---~~~  115 (431)
                      .+..|..+.+    .   ..+..+.+.+.+..  .......++.+......+.+         .+..+..++..   ..+
T Consensus        70 ~~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~Pt~~---------~l~~~~~l~~~~~~~~~  140 (336)
T d1lsha1          70 QKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQATRE---------SLSYARELLNTSFIRNR  140 (336)
T ss_dssp             SHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCHH---------HHHHHHHHHTCHHHHTC
T ss_pred             ChhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCHH---------HHHHHHHHHcCcccccc
Confidence            4555555543    2   35556667665533  33333344444433332222         23445555532   236


Q ss_pred             hhHHHHHHHHHHHhhc----CCCCCChhhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 014088          116 LSMLRNATWTLSNFCR----GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  191 (431)
Q Consensus       116 ~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  191 (431)
                      +.++..+.-+++++..    ..+.........+...+.+..+..+.+-+..++.+|+|+..  +         +.++.+.
T Consensus       141 ~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~  209 (336)
T d1lsha1         141 PILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQ  209 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHH
Confidence            7777777777776654    32333333334555556666667788888888999999863  2         3456677


Q ss_pred             HhcCCC-------CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhccc-chhhHHHHHHHHHHHhhcCCHHHH
Q 014088          192 ELLRHP-------SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVNQI  263 (431)
Q Consensus       192 ~ll~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~  263 (431)
                      .++...       ...+|..|++++.++....+...+        +.+.+++.+. .+.++|..|+..|... ..+..  
T Consensus       210 ~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~--  278 (336)
T d1lsha1         210 RFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA--  278 (336)
T ss_dssp             TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH--
T ss_pred             HHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH--
Confidence            776432       346889999999999876553322        4455555433 3678888888877654 22233  


Q ss_pred             HHHHHhCCHHHHHHHHcc-CCHhHHHHHHHHHHHhcCCCCHH
Q 014088          264 QAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNE  304 (431)
Q Consensus       264 ~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~  304 (431)
                             .+..+...+.. ++..|..-+...|.+++....|.
T Consensus       279 -------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         279 -------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             -------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             -------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcc
Confidence                   34456666655 48889888888999988866543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.052  Score=53.87  Aligned_cols=180  Identities=8%  Similarity=0.056  Sum_probs=105.6

Q ss_pred             CChHHHHHHHHHHHHHcCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChH------------HHHH
Q 014088           29 CFGAVQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK------------CRDL   96 (431)
Q Consensus        29 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~------------~~~~   96 (431)
                      ..+.++..++++++..+.....  ..+  ..+++.++.+|++++..++..|++++..++.....            ....
T Consensus       470 ~~~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~  545 (959)
T d1wa5c_         470 PHIILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS  545 (959)
T ss_dssp             SCHHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT
T ss_pred             chHHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhh
Confidence            3467899999999998763321  122  25789999999999999999999999999753210            0000


Q ss_pred             HHHcCChHHHHHHhccccch----hHHHHHHHHHHHhhcCCCCCChhhHhhhHHHHHHhhc----C-CChHHHHHHHHHH
Q 014088           97 VLSNGALMPLLAQFNEHAKL----SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----S-NDDEVLTDACWAL  167 (431)
Q Consensus        97 i~~~~~i~~l~~~l~~~~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----~-~~~~v~~~a~~~L  167 (431)
                      +.  ..+..++..+......    .....++.++..+....+.........+++.+...+.    + .++.....+..++
T Consensus       546 l~--~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l  623 (959)
T d1wa5c_         546 TE--ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESI  623 (959)
T ss_dssp             HH--HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            10  1233444444222111    1123355556555543322323333445555555442    2 3567777788888


Q ss_pred             HHhccCC-hHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHhHhhcC
Q 014088          168 SYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  215 (431)
Q Consensus       168 ~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~  215 (431)
                      ..+.... +..... ....+++.+...+..........++..+..+...
T Consensus       624 ~~l~~~~~~~~~~~-l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~  671 (959)
T d1wa5c_         624 GAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ  671 (959)
T ss_dssp             HHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCchhHHH-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh
Confidence            8776432 233332 3345678888888777777777788777776643

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.28  E-value=0.18  Score=43.15  Aligned_cols=168  Identities=14%  Similarity=0.203  Sum_probs=106.6

Q ss_pred             hhHHHHHHhhcC----CChHHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHH----HhcCCCCcccHHHHHHHHh
Q 014088          143 PALPALERLIHS----NDDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLV----ELLRHPSPSVLIPALRTVG  210 (431)
Q Consensus       143 ~~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~----~ll~~~~~~v~~~a~~~l~  210 (431)
                      ..+..+..++++    .++.++..+..+++++..    +.+...     ..+++.+.    +.....+.+-+..++++|+
T Consensus       123 ~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  197 (336)
T d1lsha1         123 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALG  197 (336)
T ss_dssp             HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHh
Confidence            345555666653    477888888888887763    211111     12233333    3344566666777899999


Q ss_pred             HhhcCChhhhHHHhhcCChHHHHHHhccc------chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCHHHHHHHHccC--
Q 014088          211 NIVTGDDMQTQCIINHQALPCLLDLLTQN------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--  282 (431)
Q Consensus       211 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--  282 (431)
                      |+-.  +         ..++.+...+...      ....+|..|++++.+++...+...+        +.+++++.+.  
T Consensus       198 N~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e  258 (336)
T d1lsha1         198 NAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAI  258 (336)
T ss_dssp             HHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTS
T ss_pred             ccCC--H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCC
Confidence            9853  2         2356666666431      2568999999999999887665433        3455666554  


Q ss_pred             CHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc-CCCCHHHHHHHHHHHHHHHHhhh
Q 014088          283 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-NCPDPRIVTVCLEGLENILKAGE  345 (431)
Q Consensus       283 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~al~~L~~l~~~~~  345 (431)
                      ++++|..|..+|...  +.+...         +..+...+ ..++.++...+...|.++.+...
T Consensus       259 ~~EvRiaA~~~lm~t--~P~~~~---------l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~  311 (336)
T d1lsha1         259 KSELRIRSCIVFFES--KPSVAL---------VSMVAVRLRREPNLQVASFVYSQMRSLSRSSN  311 (336)
T ss_dssp             CHHHHHHHHHHHHHT--CCCHHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred             ChHHHHHHHHHHHhc--CCCHHH---------HHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC
Confidence            789999888888663  333333         44444555 45678888888888888876544

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.94  E-value=0.0093  Score=48.44  Aligned_cols=126  Identities=9%  Similarity=0.135  Sum_probs=66.8

Q ss_pred             HhcCCCCcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHHH-----Hhhc-CCHHHHHH
Q 014088          192 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS-----NITA-GNVNQIQA  265 (431)
Q Consensus       192 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~-----nl~~-~~~~~~~~  265 (431)
                      .+|.++..+++..|.+-                  --+..|..+++++ ++.||..+++.|.     .+.. .+.+.+..
T Consensus        49 ~~l~~p~~e~Ra~Aa~~------------------a~~~~L~~Ll~D~-d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~  109 (233)
T d1lrva_          49 QYLADPFWERRAIAVRY------------------SPVEALTPLIRDS-DEVVRRAVAYRLPREQLSALMFDEDREVRIT  109 (233)
T ss_dssp             GGTTCSSHHHHHHHHTT------------------SCGGGGGGGTTCS-SHHHHHHHHTTSCSGGGGGTTTCSCHHHHHH
T ss_pred             HHhcCCcHHHHHHHHhc------------------CCHHHHHHHhcCC-CHHHHHHHHHHcCHHHHHHHhcCCChhHHHH
Confidence            35666777777555431                  1233455556666 6666666665432     1211 22333333


Q ss_pred             HHHhCCHHHHHHHHccCCHhHHHHHHHH-----HHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHH
Q 014088          266 IIEAGIIGPLVNLLLNAEFEIKKEAAWA-----ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG  336 (431)
Q Consensus       266 l~~~~~i~~L~~ll~~~~~~v~~~a~~a-----L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~  336 (431)
                      ....--.+.|..++.++++.|+..+...     |..++....++.+......-..+.|..+++.+++.++..+...
T Consensus       110 aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         110 VADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             HHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            3332224456666777777777776653     2333333444555544444445666667777777777666544

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.27  E-value=0.96  Score=38.49  Aligned_cols=139  Identities=14%  Similarity=0.083  Sum_probs=97.6

Q ss_pred             hhhHHHHHHHHHHHhhcCCHHHHHHHHH-hCCHHHHHHHHccCCHhHHHHHHHHHHHhcCCCC----H-H------HHHH
Q 014088          241 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS----N-E------QIKF  308 (431)
Q Consensus       241 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----~-~------~~~~  308 (431)
                      +.....+++.+|..+... ......+++ ...+..+...+.++...++..|...|..++....    . .      ....
T Consensus        69 d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~  147 (343)
T d2bnxa1          69 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  147 (343)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence            345677888888888775 444555554 6779999999999999999999999988875421    1 1      1122


Q ss_pred             HHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 014088          309 LVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  386 (431)
Q Consensus       309 l~~~~~l~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~  386 (431)
                      ..+.+-...+++.++.. +.+.+..++..+..++...+..+.      ....+..|...|..+.+..+.+.+++++...
T Consensus       148 ~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~------R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Q  220 (343)
T d2bnxa1         148 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQ  220 (343)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             hcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH------HHHHHHHHHHCChHHHHHHHHccCChHHHHH
Confidence            23456678888888654 567777777777777765554332      2236777888999998999888888777543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.48  E-value=0.079  Score=39.19  Aligned_cols=74  Identities=19%  Similarity=0.258  Sum_probs=59.3

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILE  392 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~  392 (431)
                      ++..|..-++++++.++..|+..|-.++++++..           |+..+...++++.+..+. ..++..|++++..++.
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~-----------f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~  111 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP-----------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ  111 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchH-----------HHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            3555666678889999999999999999998654           677777788888888875 4568899999999999


Q ss_pred             HhcCCC
Q 014088          393 TYWVEE  398 (431)
Q Consensus       393 ~~~~~e  398 (431)
                      .+-..-
T Consensus       112 ~W~~~f  117 (145)
T d1dvpa1         112 TWAYAF  117 (145)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            875533

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.98  Score=32.84  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=57.6

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA  387 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a  387 (431)
                      .+..|..-++++++.++..++..|..++++++..           |+..+....+++.+..+..      ..+++|++++
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~-----------fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~ki  107 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK-----------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRV  107 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHH
Confidence            3455556677889999999999999999987653           7778888889999998865      3578999999


Q ss_pred             HHHHHHhcC
Q 014088          388 VKILETYWV  396 (431)
Q Consensus       388 ~~~l~~~~~  396 (431)
                      ..++..|-.
T Consensus       108 l~li~~Wa~  116 (143)
T d1mhqa_         108 IEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887643

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=1.3  Score=32.21  Aligned_cols=72  Identities=17%  Similarity=0.249  Sum_probs=58.7

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 014088          314 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA  387 (431)
Q Consensus       314 ~l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a  387 (431)
                      ++..|..-++++++.++..++..|-.++++++..           |+..+.+.++++.+..+..      ..+.+|++++
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~-----------f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~ki  114 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR-----------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKI  114 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHH-----------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHH-----------HHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHH
Confidence            3555666677889999999999999999987653           7888888899999988864      3678999999


Q ss_pred             HHHHHHhcC
Q 014088          388 VKILETYWV  396 (431)
Q Consensus       388 ~~~l~~~~~  396 (431)
                      ..++..|..
T Consensus       115 l~li~~W~~  123 (145)
T d1ujka_         115 LELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=0.94  Score=33.29  Aligned_cols=72  Identities=15%  Similarity=0.225  Sum_probs=58.0

Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchHHHHHHhhccHHHHHHhhcC------CCHHHHHHHH
Q 014088          315 IKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH------DNTEIYEKAV  388 (431)
Q Consensus       315 l~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~------~~~~v~~~a~  388 (431)
                      +..|..-++++++.++..++..|..++++++..           |+..+....+++.+..+...      .+..|++++.
T Consensus        41 ~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~-----------F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil  109 (151)
T d1juqa_          41 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRR-----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVI  109 (151)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHH-----------HHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHH
Confidence            455555667788999999999999999998764           67778788889889888653      4789999999


Q ss_pred             HHHHHhcCC
Q 014088          389 KILETYWVE  397 (431)
Q Consensus       389 ~~l~~~~~~  397 (431)
                      .++..|...
T Consensus       110 ~ll~~Wa~~  118 (151)
T d1juqa_         110 ELLYSWTMA  118 (151)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887553

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.56  E-value=1.9  Score=31.24  Aligned_cols=73  Identities=8%  Similarity=-0.047  Sum_probs=60.5

Q ss_pred             CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 014088          271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~al~~L~~l~~~  343 (431)
                      ++..+..-+.++++.++..|+..|-.+..++++.....+.+.++++.|..+++.      .+..++..++..+......
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~  124 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  124 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            355577778888999999999999999999988888888888899999998863      4668999999988877543

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.40  E-value=2.5  Score=35.64  Aligned_cols=192  Identities=13%  Similarity=0.055  Sum_probs=106.3

Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 014088           53 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  132 (431)
Q Consensus        53 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  132 (431)
                      ...++...+..|+.++.++++.-|.....+|.++-+.-...|..+.+ .....+.+.+..+....-....+++++.+..+
T Consensus       127 ~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~~if~~fi~e~~~~~gI~elLeil~sii~g  205 (343)
T d2jaka1         127 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING  205 (343)
T ss_dssp             TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred             HhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Confidence            33444567788999999999999999999998887655555555443 23445566564455555566777888888776


Q ss_pred             CCCC-ChhhHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCcccHHHHHHHHh
Q 014088          133 KPQP-LFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  210 (431)
Q Consensus       133 ~~~~-~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~  210 (431)
                      .... +.....-+...++.+.+...- ..-.....++......++.....     ++..+++.=-..++.=...-+.-+.
T Consensus       206 f~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~-----~i~~llk~WP~t~~~Kev~FL~el~  280 (343)
T d2jaka1         206 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELE  280 (343)
T ss_dssp             CCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHH-----HHHHHHHhCCCCCchHHHHHHHHHH
Confidence            5332 333334455556666664432 22333344444444444433221     2222333322233333344455555


Q ss_pred             HhhcCCh-hhhHHHhhcCChHHHHHHhcccchhhHHHHHHHHH
Q 014088          211 NIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  252 (431)
Q Consensus       211 ~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  252 (431)
                      .+....+ ...+.+. ..+...+.+.+.++ +..|.+.|+...
T Consensus       281 ~il~~~~~~~f~~~~-~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         281 EILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             HHHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HHHHhCCHHHHHHHH-HHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            5544332 2222222 24666777777777 777777766443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.33  E-value=1.6  Score=31.57  Aligned_cols=73  Identities=8%  Similarity=-0.094  Sum_probs=60.0

Q ss_pred             CHHHHHHHHccCCHhHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 014088          271 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA  343 (431)
Q Consensus       271 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~al~~L~~l~~~  343 (431)
                      .+..|..-+.++++.++..|+..|-.+..++++.....+.+..+++.|..++..      .++.++..++..+......
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~  117 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            345567777888999999999999999999888887887888889999998863      4678999999988877654

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.51  E-value=11  Score=31.21  Aligned_cols=138  Identities=14%  Similarity=0.164  Sum_probs=81.3

Q ss_pred             cHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhc----cc----chhhHHHHHHHHHHHhhcCCHHHHHHHHHhCCH
Q 014088          201 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT----QN----YKKSIKKEACWTISNITAGNVNQIQAIIEAGII  272 (431)
Q Consensus       201 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i  272 (431)
                      +++..++.+...+...+.. + .+...+++.+++.+-    ..    .++++-.-....+..+...-.+....+.+. ++
T Consensus        45 iKkeiLkLi~t~i~~~~d~-~-~v~~~~i~pl~~~vL~DY~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~-VF  121 (321)
T d1w9ca_          45 VKRETLKLISGWVSRSNDP-Q-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA-VF  121 (321)
T ss_dssp             HHHHHHHHHHHHHTTCSCH-H-HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHhcCCCH-H-HHHHHHHHHHHHHHHHHHHhCchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHH-HH
Confidence            4556666666666554322 2 233356777665331    11    123333333333333333333444445454 66


Q ss_pred             HHHHHHHccC---CHhHHHHHHHHHHHhcCCCC-------HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 014088          273 GPLVNLLLNA---EFEIKKEAAWAISNATSGGS-------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  342 (431)
Q Consensus       273 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~~L~~l~~  342 (431)
                      ..-++++..+   .|+.|..-...|..+..+.-       +++.+.     +++.+.-.+++.++++...++.++..++.
T Consensus       122 e~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~~-----vidsi~wa~kH~~~~V~~~gL~~l~~ll~  196 (321)
T d1w9ca_         122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLLQ  196 (321)
T ss_dssp             HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHHHHH-----HHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            7778888764   68888888777777765442       233222     46666677788999999999999998887


Q ss_pred             hhhh
Q 014088          343 AGEA  346 (431)
Q Consensus       343 ~~~~  346 (431)
                      .-.+
T Consensus       197 n~~~  200 (321)
T d1w9ca_         197 NVAQ  200 (321)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            5544

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.98  E-value=12  Score=31.32  Aligned_cols=160  Identities=12%  Similarity=0.106  Sum_probs=102.1

Q ss_pred             hccCChHHHHHHHHhCcHHHHHHhcC----CC-------CcccHHHHHHHHhHhhcCChhhhHHHhhcCChHHHHHHhcc
Q 014088          170 LSDGTNDKIQAVIEAGVCPRLVELLR----HP-------SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ  238 (431)
Q Consensus       170 l~~~~~~~~~~~~~~~~i~~L~~ll~----~~-------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  238 (431)
                      |-.++....+.+ ..+++..|+.+|.    ..       +......+++|+..++.........+-....+..+...+.+
T Consensus        31 Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s  109 (343)
T d2bnxa1          31 LNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP  109 (343)
T ss_dssp             HHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCT
T ss_pred             HhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCC
Confidence            344555666666 3456666666652    11       12355678899988887665555555577889999999988


Q ss_pred             cchhhHHHHHHHHHHHhhcC--CHHHHHHH----------HHhCCHHHHHHHHccC-CHhHHHHHHHHHHHhcCCCCH-H
Q 014088          239 NYKKSIKKEACWTISNITAG--NVNQIQAI----------IEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSN-E  304 (431)
Q Consensus       239 ~~~~~v~~~a~~~L~nl~~~--~~~~~~~l----------~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~-~  304 (431)
                      + ...+|..|...|..+|.-  .++....+          -+.+-+..+++.+..+ +.+.+..++..+-.++...+. +
T Consensus       110 ~-~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~  188 (343)
T d2bnxa1         110 A-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD  188 (343)
T ss_dssp             T-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH
T ss_pred             C-chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHH
Confidence            8 999999999999998852  11222211          1345578888888766 677887788777777765432 2


Q ss_pred             ----HHHHHHHCCChHHHHhhcCCCCHHHHH
Q 014088          305 ----QIKFLVSQGCIKPLCDLLNCPDPRIVT  331 (431)
Q Consensus       305 ----~~~~l~~~~~l~~L~~ll~~~~~~v~~  331 (431)
                          .+..+...|+.+.+..+-...++.+..
T Consensus       189 ~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~  219 (343)
T d2bnxa1         189 FRVHIRSELMRLGLHQVLQELREIENEDMKV  219 (343)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHHHHHCChHHHHHHHHccCChHHHH
Confidence                233455667665555554455555443