Citrus Sinensis ID: 014097

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
MDKGPLLLENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMDGFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAANDLSTVCDDFLLDIEFTEKVAKFDCGPVEGSHLGNSSSESHSPGASGSNVAVGMSDSSITALESECKNDSLEKMVNCELHGTFKSKCEYQAPDMEKCPSSHDMDRFDELDSDDNVLLSSILSKCKKRVKSTVLGTKVKRLRKPTKRYIEESSDLKPGSLMRGQNVSTATLKDKHPKVTPCNGSSKGSQVASESWLRGGRLKKRSPILGFESDDDIFSSDSDDDRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVRFLSYFSVPLT
ccccccHHHHHccccccEEEccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccc
cccccHHHHHHcccccEEEEEcccccccHHHHHHcHHHHHccccccccEEccEccccccccccccccccccccEEcccccccccccccccccccccccHHHccccccHccHHHHHccccccccccccccccEccccccccccccccccccccccccccccccccccccEEEcccccccccHHHccccHHHHHHHHHHHHHHcccccccccHHHcccccccccHHHccccccccHHHHHHHHHHccccccccHHcccccccccccEccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccHHHHHHHHHHHHccHHHccccEEEEEEEEEccc
MDKGPLLLENVRNMTSQRVKVEESFVPAFKDKAAEVSNllaepkcdhasvdgVLSFgrenlgkssgmdgfsyefefgfrtncggldsfttqgeddLKLEVLDGLlddidevddfhaandlstvcddFLLDIEFTEkvakfdcgpvegshlgnssseshspgasgsnvavgmsdsSITALESEckndslekmvncelhgtfkskceyqapdmekcpsshdmdrfdeldsddNVLLSSILSKCKKRvkstvlgtkvkrlrkptkryieessdlkpgslmrgqnvstatlkdkhpkvtpcngsskgsqvaseswlrggrlkkrspilgfesdddifssdsdddrVRKRKSKIDDRRKNQRMWTLSEVMKLIDGisqfgvgkwtDIKRLLfsssshrtpidlRDKWRNLLRASYAHQKNKGEVRFLSYFSVPLT
mdkgplllenvrnmtsqrvkveesFVPAFKDKAAEVSNLlaepkcdhASVDGVLSFGRENLGKSSGMDGFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAANDLSTVCDDFLLDIEFTEKVAKFDCGPVEGSHLgnssseshspgASGSNVAVGMSDSSITALESECKNDSLEKMVNCELHGTFKSKCEYQAPDMEKCPSSHDMDRFDELDSDDNVLLSSilskckkrvkstvlgtkvkrlrkptkryieessdlkpgslmrgQNVStatlkdkhpkvtpcngsskgsqvaseswlrggrlkkrspilgfesdddifssdsdddrvrkrkskiddrrknqrmwtlsEVMKLIDGISQFGVGKWTDIKRLLfsssshrtpidlRDKWRNLLRASyahqknkgevrflsyfsvplt
MDKGPLLLENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMDGFSYEFEFGFRTNCGGLDSFTTQGEDDLKlevldgllddidevddFHAANDLSTVCDDFLLDIEFTEKVAKFDCGPVegshlgnssseshspgasgsnVAVGMSDSSITALESECKNDSLEKMVNCELHGTFKSKCEYQAPDMEKCPSSHDMDRFDELDSDDNVLLSSILSKCKKRVKSTVLGTKVKRLRKPTKRYIEESSDLKPGSLMRGQNVSTATLKDKHPKVTPCNGSSKGSQVASESWLRGGRLKKRSPILGFEsdddifssdsdddrvrkrkskiddrrkNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVRFLSYFSVPLT
***********************************VSNLLAEPKCDHASVDGVLSFGRENLGKSSGMDGFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAANDLSTVCDDFLLDIEFTEKVAKFDCGP***********************************************VNCELHGTF*******************************VLLSSILSKCKKRVKSTVLG**********************************************************************************************************MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVRFLSYFS****
***********************SFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRE*****************************************LDGLLDDIDEVDDFH**NDLSTVCDDFLLDIEF*********************************************************************************************************************************************************************************************************************************WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL**********************P**
MDKGPLLLENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMDGFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAANDLSTVCDDFLLDIEFTEKVAKFDCGPVEGS***********************SDSSITALESECKNDSLEKMVNCELHGTFKSKCEYQAPDMEKCPSSHDMDRFDELDSDDNVLLSSILSKCKKRVKSTVLGTKVKRLRKPTKRYIEESSDLKPGSLMRGQNVSTATLKDK**********************RGGRLKKRSPILGFESDDDIFS******************RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVRFLSYFSVPLT
****PLLLENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMDGFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAANDLSTVCDDFLLDIEFTEKVAKFDCGPVEGSHLGN*********ASGSNVAVGMSDSSITALESECKNDSLEKMVNCELHGTFKSKCEYQAPDMEKCPSSHDMDRFDELDSDDNVLLSSILSKCKKR*****************************************************************************************************************MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVRFLSYFSVPLT
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MDKGPLLLENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGMDGFSYEFEFGFRTNCGGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAANDLSTVCDDFLLDIEFTEKVAKFDCGPVEGSHLGNSSSESHSPGASGSNVAVGMSDSSITALESECKNDSLEKMVNCELHGTFKSKCEYQAPDMEKCPSSHDMDRFDELDSDDNVLLSSILSKCKKRVKSTVLGTKVKRLRKPTKRYIEESSDLKPGSLMRGQNVSTATLKDKHPKVTPCNGSSKGSQVASESWLRGGRLKKRSPILGFESDDDIFSSDSDDDRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVRFLSYFSVPLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query430 2.2.26 [Sep-21-2011]
Q9FFY9640 Telomere repeat-binding p no no 0.213 0.143 0.326 6e-10
Q9C7B1619 Telomere repeat-binding p no no 0.155 0.108 0.367 1e-08
Q9LL45633 Telomere-binding protein no no 0.153 0.104 0.388 2e-08
Q6R0E3630 Telomere repeat-binding p no no 0.176 0.120 0.350 4e-08
Q9SNB9553 Telomere repeat-binding p no no 0.181 0.141 0.303 6e-08
Q9M347400 Telomere repeat-binding p no no 0.155 0.167 0.367 1e-07
Q8L7L8578 Telomere repeat-binding p no no 0.139 0.103 0.360 1e-06
F4IEY4 287 Telomere repeat-binding f no no 0.118 0.177 0.462 0.0001
F4I7L1 296 Telomere repeat-binding f no no 0.118 0.172 0.462 0.0002
>sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4 PE=1 SV=1 Back     alignment and function desciption
 Score = 65.9 bits (159), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 60/98 (61%), Gaps = 6/98 (6%)

Query: 322 PILGFESDDDIFSSDSDDDRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTD 381
           P+L  ESD       ++    + +++++  RR  +R ++++EV  L+  + + G G+W D
Sbjct: 506 PVLALESDALALVPVNE----KPKRTELSQRR-TRRPFSVTEVEALVSAVEEVGTGRWRD 560

Query: 382 IKRLLFSSSSHRTPIDLRDKWRNLLR-ASYAHQKNKGE 418
           +K   F ++SHRT +DL+DKW+ L+  AS + Q+ +GE
Sbjct: 561 VKLRSFENASHRTYVDLKDKWKTLVHTASISPQQRRGE 598
Binds specifically to the plant telomeric double-stranded DNA sequences 5'-TTTAGGG-3'. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1 PE=1 SV=2 Back     alignment and function description
>sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5 PE=1 SV=2 Back     alignment and function description
>sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9M347|TRP6_ARATH Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6 PE=1 SV=1 Back     alignment and function description
>sp|Q8L7L8|TRP1_ARATH Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1 PE=1 SV=2 Back     alignment and function description
>sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5 OS=Arabidopsis thaliana GN=At1g72740 PE=2 SV=1 Back     alignment and function description
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana GN=At1g17520 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
297741622 542 unnamed protein product [Vitis vinifera] 0.944 0.749 0.457 2e-88
225440021455 PREDICTED: uncharacterized protein LOC10 0.741 0.701 0.445 8e-66
357440365463 hypothetical protein MTR_1g063940 [Medic 0.855 0.794 0.393 4e-58
356548325477 PREDICTED: uncharacterized protein LOC10 0.858 0.773 0.406 2e-57
255556964 542 hypothetical protein RCOM_1355420 [Ricin 0.693 0.549 0.498 8e-56
356533240464 PREDICTED: uncharacterized protein LOC10 0.846 0.784 0.397 9e-53
297823525395 hypothetical protein ARALYDRAFT_482686 [ 0.746 0.812 0.352 1e-48
449451024477 PREDICTED: uncharacterized protein LOC10 0.9 0.811 0.356 1e-48
449482457477 PREDICTED: uncharacterized LOC101219571 0.9 0.811 0.353 2e-48
30687001410 protein TRF-like 8 [Arabidopsis thaliana 0.753 0.790 0.343 6e-47
>gi|297741622|emb|CBI32754.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 216/472 (45%), Positives = 284/472 (60%), Gaps = 66/472 (13%)

Query: 8   LENVRNMTSQRVKVEESFVPAFKDKAAEVSNLLAEPKCDHASVDGVLSFGRENLGKSSGM 67
           L+   NM  QRV  +ESFVPA +D+A EV +LLAEPK D+ SVDGVLS     L K   +
Sbjct: 8   LKKYVNMKCQRVNEDESFVPALEDEAIEVEHLLAEPKNDNVSVDGVLS-----LKKCLDI 62

Query: 68  DGFSYEFEFGFRTNCGGLDSFTT-QGEDDLKLEVLDGLLDDIDEVDDFHAANDLSTVCDD 126
           +     FE G  ++ GG+DS TT +GED+LKL V DG+L ++ EV D HA N LS  C+D
Sbjct: 63  EDIPGRFECGLESHSGGMDSNTTREGEDELKLGVFDGMLHEVAEVGDLHATNSLSGACED 122

Query: 127 FLLDIEFTEKVAKFDCGPVEGSHLGNSSSESHSPGASGS-NVAVGMSDSSITALE-SECK 184
           +LLDIEF E V++ D GP  GSHLGNSSSESHSPG SGS N AVG+S+SS   +   EC 
Sbjct: 123 YLLDIEFAETVSELDNGPCAGSHLGNSSSESHSPGFSGSDNGAVGISESSTGTIPVPECG 182

Query: 185 NDSLEKMVNCELHGTFKSKCEYQA---PDME-KCPSSHDMDRFDELDSDDNVLLSSILSK 240
           N+ L+KM  C LHGT +SKCE +      ME +  +S ++   D +D+  N++    L +
Sbjct: 183 NN-LDKMTICTLHGTSRSKCECKMLVEGKMELQGSASFNLQNPDGVDNVSNLVSGIPLVE 241

Query: 241 CKKRV--------KSTVLGTKV---------------------------KRLRKPTKRYI 265
            +K V        K++ +G  +                           KR+R+PT+RYI
Sbjct: 242 NRKDVTFTNLQYNKASSIGQGMKKESFAGRKGSRKRSVEASDVGMLLSEKRMRRPTRRYI 301

Query: 266 EESSDLKPGS-LMRGQNVSTAT----LKDKHPKVTPCNGSSKGSQVASESWLRG------ 314
           EE SDLK  S   R +N +T T    L ++H   T   G S    V S S+ R       
Sbjct: 302 EEFSDLKSKSNRGRPKNSTTTTKNKLLGNRHRSETHHKGFSAAPLVPSGSYGRSSDRTPF 361

Query: 315 ------GRLKKRSPILGFESDDDIFSSDSDDDRVR-KRKSKIDDRRKNQRMWTLSEVMKL 367
                 G LKK + I   +SD++   ++S+DD +  KR     DRRK+QR+WTLSEVMKL
Sbjct: 362 EVGVQKGCLKKYASISDLDSDEESSPAESEDDCMTIKRPETSGDRRKHQRLWTLSEVMKL 421

Query: 368 IDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEV 419
           +DG+S +GVG+WTDIKRLLFSSS++RTP+DLRDKWRNLLRAS A  ++K EV
Sbjct: 422 VDGVSHYGVGRWTDIKRLLFSSSAYRTPVDLRDKWRNLLRASCAQLQSKREV 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225440021|ref|XP_002276488.1| PREDICTED: uncharacterized protein LOC100263609 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357440365|ref|XP_003590460.1| hypothetical protein MTR_1g063940 [Medicago truncatula] gi|355479508|gb|AES60711.1| hypothetical protein MTR_1g063940 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356548325|ref|XP_003542553.1| PREDICTED: uncharacterized protein LOC100810255 [Glycine max] Back     alignment and taxonomy information
>gi|255556964|ref|XP_002519515.1| hypothetical protein RCOM_1355420 [Ricinus communis] gi|223541378|gb|EEF42929.1| hypothetical protein RCOM_1355420 [Ricinus communis] Back     alignment and taxonomy information
>gi|356533240|ref|XP_003535174.1| PREDICTED: uncharacterized protein LOC100777720 [Glycine max] Back     alignment and taxonomy information
>gi|297823525|ref|XP_002879645.1| hypothetical protein ARALYDRAFT_482686 [Arabidopsis lyrata subsp. lyrata] gi|297325484|gb|EFH55904.1| hypothetical protein ARALYDRAFT_482686 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449451024|ref|XP_004143262.1| PREDICTED: uncharacterized protein LOC101219571 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449482457|ref|XP_004156288.1| PREDICTED: uncharacterized LOC101219571 [Cucumis sativus] Back     alignment and taxonomy information
>gi|30687001|ref|NP_850275.1| protein TRF-like 8 [Arabidopsis thaliana] gi|79324500|ref|NP_001031497.1| protein TRF-like 8 [Arabidopsis thaliana] gi|330254243|gb|AEC09337.1| protein TRF-like 8 [Arabidopsis thaliana] gi|330254244|gb|AEC09338.1| protein TRF-like 8 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
TAIR|locus:504955960410 TRFL8 "TRF-like 8" [Arabidopsi 0.148 0.156 0.656 2e-30
TAIR|locus:2030255630 TRFL6 "TRF-like 6" [Arabidopsi 0.132 0.090 0.596 4.1e-17
TAIR|locus:2159048640 TBP1 "AT5G13820" [Arabidopsis 0.146 0.098 0.390 9.2e-07
UNIPROTKB|Q9LL45633 TBP1 "Telomere-binding protein 0.144 0.097 0.396 4.2e-06
TAIR|locus:2101232619 TRFL9 "TRF-like 9" [Arabidopsi 0.146 0.101 0.375 4.5e-06
TAIR|locus:2148383578 TRP1 "AT5G59430" [Arabidopsis 0.146 0.108 0.359 4.7e-06
TAIR|locus:2075145553 TRFL1 "TRF-like 1" [Arabidopsi 0.146 0.113 0.359 9.5e-06
TAIR|locus:2025007630 TRFL2 "TRF-like 2" [Arabidopsi 0.146 0.1 0.359 2.2e-05
TAIR|locus:2007878 296 AT1G17520 [Arabidopsis thalian 0.151 0.219 0.420 0.00042
TAIR|locus:2030275 287 AT1G72740 [Arabidopsis thalian 0.118 0.177 0.481 0.00066
TAIR|locus:504955960 TRFL8 "TRF-like 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 242 (90.2 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 42/64 (65%), Positives = 51/64 (79%)

Query:   355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 414
             NQR+WTL EVM L+DGIS FGVGKWTDIK   F  ++HR P+D+RDKWRNLL+ASY  + 
Sbjct:   291 NQRIWTLDEVMNLVDGISHFGVGKWTDIKNHFFHYAAHRKPVDIRDKWRNLLKASYNEKH 350

Query:   415 NKGE 418
             N G+
Sbjct:   351 NDGQ 354
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
TAIR|locus:2030255 TRFL6 "TRF-like 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159048 TBP1 "AT5G13820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9LL45 TBP1 "Telomere-binding protein 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2101232 TRFL9 "TRF-like 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148383 TRP1 "AT5G59430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075145 TRFL1 "TRF-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025007 TRFL2 "TRF-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007878 AT1G17520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030275 AT1G72740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 2e-17
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 6e-08
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 8e-08
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 1e-05
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 7e-04
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information 
 Score = 75.7 bits (187), Expect = 2e-17
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407
           R WT  E   L++G+ ++GVG W  I +  +   ++RT +DL+DKWRNL +
Sbjct: 1   RKWTDEEDEALVEGVEKYGVGNWAKILK-DYFFVNNRTSVDLKDKWRNLKK 50

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 430
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.09
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.78
PLN03212 249 Transcription repressor MYB5; Provisional 98.7
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.66
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.49
PLN03091 459 hypothetical protein; Provisional 98.44
KOG0048 238 consensus Transcription factor, Myb superfamily [T 98.15
PLN03212 249 Transcription repressor MYB5; Provisional 97.94
PLN03091 459 hypothetical protein; Provisional 97.83
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.79
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 97.3
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.27
KOG0048 238 consensus Transcription factor, Myb superfamily [T 96.93
KOG0051 607 consensus RNA polymerase I termination factor, Myb 96.89
KOG0049 939 consensus Transcription factor, Myb superfamily [T 96.65
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 96.49
KOG0049 939 consensus Transcription factor, Myb superfamily [T 96.4
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 96.36
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 95.78
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 93.62
KOG1279 506 consensus Chromatin remodeling factor subunit and 93.53
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 93.16
PLN031421033 Probable chromatin-remodeling complex ATPase chain 92.7
KOG4282 345 consensus Transcription factor GT-2 and related pr 92.36
COG5147 512 REB1 Myb superfamily proteins, including transcrip 92.12
COG5259 531 RSC8 RSC chromatin remodeling complex subunit RSC8 91.51
KOG2656 445 consensus DNA methyltransferase 1-associated prote 87.32
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 87.26
COG5147 512 REB1 Myb superfamily proteins, including transcrip 84.48
KOG0051607 consensus RNA polymerase I termination factor, Myb 82.41
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information 
Probab=99.09  E-value=1.2e-10  Score=84.89  Aligned_cols=48  Identities=29%  Similarity=0.603  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhh
Q 014097          356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL  406 (430)
Q Consensus       356 RrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~  406 (430)
                      |.+||.+|++.|+++|.+||.++|..|...++   .+||..||+.+|++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence            56899999999999999999988999999874   4999999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
2qhb_A86 Crystal Structure Of Ngtrf Complexed With Telomeric 2e-09
2ckx_A83 Crystal Structure Of Ngtrf1, Double-Stranded Telome 2e-09
2juh_A121 Solution Structure Of Dna Binding Domain Of Ngtrf1 4e-09
2roh_A122 The Dna Binding Domain Of Rtbp1 Length = 122 2e-08
2aje_A105 Solution Structure Of The Arabidopsis Thaliana Telo 2e-08
>pdb|2QHB|A Chain A, Crystal Structure Of Ngtrf Complexed With Telomeric Dna Length = 86 Back     alignment and structure 
Iteration: 1

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR-ASYAHQK 414
           +R ++++EV  L++ +   G G+W D+K   F ++ HRT +DL+DKW+ L+  AS A Q+
Sbjct: 4   RRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQ 63
Query: 415 NKGE 418
            +GE
Sbjct: 64  RRGE 67
>pdb|2CKX|A Chain A, Crystal Structure Of Ngtrf1, Double-Stranded Telomeric Repeat Binding Factor From Nicotiana Tabacum Length = 83 Back     alignment and structure
>pdb|2JUH|A Chain A, Solution Structure Of Dna Binding Domain Of Ngtrf1 Length = 121 Back     alignment and structure
>pdb|2ROH|A Chain A, The Dna Binding Domain Of Rtbp1 Length = 122 Back     alignment and structure
>pdb|2AJE|A Chain A, Solution Structure Of The Arabidopsis Thaliana Telomeric Repeat-Binding Protein Dna Binding Domain Length = 105 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 6e-21
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 2e-20
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 4e-20
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 2e-19
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 2e-15
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 2e-15
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 5e-15
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 1e-14
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 1e-06
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 1e-04
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 1e-04
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 4e-04
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 5e-04
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
 Score = 87.1 bits (215), Expect = 6e-21
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 342 VRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDK 401
           + + K     +R+ +R +T++EV  L++ +   G G+W D+K   F +  HRT +DL+DK
Sbjct: 17  LSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDK 76

Query: 402 WRNLLR-ASYAHQKNKGE 418
           W+ L+  AS A Q+ +G 
Sbjct: 77  WKTLVHTASIAPQQRRGA 94
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 62 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.77
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.76
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.74
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.72
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.7
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.64
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.51
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.47
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.22
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.18
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.15
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.11
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.1
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.06
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 98.97
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 98.91
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 98.84
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.81
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 98.8
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.77
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.77
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 98.73
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.72
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.66
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.66
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.62
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.6
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.6
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.53
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.49
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.48
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.46
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 97.78
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.21
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.09
1ign_A 246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 97.91
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 97.8
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.78
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.36
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 97.3
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 97.22
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 97.19
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 97.04
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 96.95
2crg_A70 Metastasis associated protein MTA3; transcription 96.83
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 96.42
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 96.34
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 96.26
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 95.63
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 95.35
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 95.03
4b4c_A 211 Chromodomain-helicase-DNA-binding protein 1; chrom 94.83
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 93.88
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 93.43
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 90.4
2xb0_X 270 Chromo domain-containing protein 1; hydrolase, DNA 84.43
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 82.91
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 83.49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
Probab=99.77  E-value=3.2e-19  Score=150.93  Aligned_cols=71  Identities=30%  Similarity=0.667  Sum_probs=62.0

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhccccccccccccc
Q 014097          350 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVR  420 (430)
Q Consensus       350 ~krRKkRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~~~~sk~e~e  420 (430)
                      .++|+++++||.||+++|++||++||.|+|+.|+..+|..|.+||.+|||||||||+|...+.+..++...
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~   77 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEP   77 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCC
Confidence            34688899999999999999999999999999999988888999999999999999998877666555443
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 430
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 2e-12
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 9e-10
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 3e-08
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 4e-06
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-04
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 0.001
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 0.003
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 60.5 bits (146), Expect = 2e-12
 Identities = 19/54 (35%), Positives = 35/54 (64%)

Query: 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410
           R ++++EV  L++ +   G G+W D+K   F ++ HRT +DL+DKW+ L+  + 
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.66
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.63
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.63
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.19
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.19
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.94
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 98.92
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 98.91
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.82
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.73
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.67
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 98.58
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.42
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.41
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.62
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 97.26
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.23
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 96.37
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 95.09
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.8e-17  Score=121.08  Aligned_cols=55  Identities=25%  Similarity=0.619  Sum_probs=50.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCCchhHHHHHHHhhhcccc
Q 014097          355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA  411 (430)
Q Consensus       355 kRrkWT~EEveaLveGVeKyGvGnWkkIl~~~f~vf~~RTsVDLKDKWRNL~K~~~~  411 (430)
                      ++++||.+|+++|++||++||.|+|+.|+..++  |.+||++||+||||||+|.+.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~--~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcC--CCCcCHHHHHHHHHHHhcCCCC
Confidence            366899999999999999999999999999875  4799999999999999998753
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure